Unit 1 Rings, polymers and analysis (F324) Module 2 Polymers and synthesis Topics covered in this module: 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 1|Page Amino acids Polypeptides and proteins Optical isomerism Condensation polymerisation – polyesters Condensation polymerisation – polyamides Addition and condensation polymerisation Breaking down condensation polymers Organic synthesis of aliphatic compounds Organic synthesis of aromatic compounds Chirality in pharmaceutical synthesis 1. Amino acids Unit 1 - Rings, polymers and analysis Polymers and synthesis Done State the general formula for an α-amino acid as RCH(NH2)COOH State that an amino acid exists as a zwitterion at a pH value called the isoelectric point. State that different R groups in α-amino acids may result in different isoelectric points. Describe the acid-base properties of α-amino acids at different pH values. Key areas to concentrate on… Amino acids feature heavily during your A2 chemistry course and you must learn all about their important aspects including: their structure that they can behave as both carboxylic acids and amines, depending upon whether their environment is acidic or alkaline. Questions based on the acid-base nature of amino acids are quite common in exams. You must read the questions carefully – you may be asked for an equation in which the amino acid is reacting as an acid; in others you may be asked for an equation of an amino acid reacting with a base. The equation is the same for both question! 2|Page Past paper questions Compound A, shown below, is an amino acid that is being used in the development of a new anti-inflammatory drug. H2N H H C C O C CH3 H OH compound A (a) (i) Explain why this molecule is described as an amino acid. ........................................................................................................... ........................................................................................................... [1] (ii) State the general formula of an -amino acid. Explain whether or not compound A fits this general formula. ........................................................................................................... ........................................................................................................... [2] (b) Compound A exists as a zwitterion in aqueous solution. (i) Draw the structure of this zwitterion. [1] [Turn over] 3|Page (ii) Show how the structure of the zwitterion would change if the solution was acidified with dilute hydrochloric acid. [1] (c) The anti-inflammatory drug is made by combining compound A with compound B, shown below. R represents a side chain. H R C O C H OH compound B Show the structure of the anti-inflammatory drug formed from compound A and compound B. [2] [Total 7 marks] Examiner’s comments (a) Most candidates recognised that compound A had amino and carboxylic acid groups. However many were unable to explain that it didn’t fit the general formula for an αamino acid because these two groups were not attached to the same carbon. (b) The unfamiliar amino acid did not prevent the more able candidates drawing the correctly ionised forms in neutral and acidic conditions. (c) Most candidates were also able to combine compound B with compound A with a peptide bond linking the correct groups. A number of candidates linked the two compounds with an acid anhydride link, which was also credited. 4|Page 2. Polypeptides and proteins Unit 1 - Rings, polymers and analysis Done Polymers and synthesis Explain the formation of a peptide (amide) linkage between α-amino acids to form polypeptides and proteins. Describe the acid and alkaline hydrolysis of proteins and peptides to form α-amino acids or carboxylates. Key areas to concentrate on… Amino acids feature heavily during your A2 chemistry course and you must learn all about their important aspects including: their structure that they can behave as both carboxylic acids and amines, depending upon whether their environment is acidic or alkaline. Amino acids form polypeptides – proteins Polypeptides can be converted back to amino acids via hydrolysis. When you are asked to draw a section of a peptide, remember that one end of the structure contains a C=O group and the other end an N-H group. Polypeptides are drawn with their ends open. Molecular model of human C-reactive protein (CRP) showing its pentameric structure. The levels of this protein in the plasma increase greatly up to 1000-fold - in response to tissue damage and inflammation. It is measured in clinical tests as a marker for inflammation and infection. Credit: T. Greenhough & A. Shrive, Wellcome Images http://images.wellcome.ac.uk 5|Page Past paper questions In this question, one mark is available for the quality of the use and organisation of scientific terms. In all living organisms a large variety of polypeptides and proteins are formed naturally from -amino acids. State the general formula of an α-amino acid and use it to describe how amino acids can be combined to give a variety of polypeptides and proteins. ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... ....................................................................................................................................... [6] Quality of Written Communication [1] [Total 7 marks] Examiner’s comments This question allowed candidates to demonstrate their knowledge of the condensation polymerisation of α-amino acids to give a polypeptide. Many knew this topic well although, for full credit, it is essential to concentrate on the chemistry and not get distracted by the biological details. A few candidates confused polypeptides with nylon or Kevlar. For full credit, the peptide linkage had to be identified and the structures did need to show polymerisation using bonds extending at each end, rather than just two amino acids combining to give a dipeptide. Candidates also needed to relate the variety of proteins to the many different sequences possible with the varying R groups in the amino acids. 6|Page Past paper questions The four amino acids shown below are found in proteins and enzymes. H H2 N C H COOH H2 N H C H COOH (CH 2 ) 4 NH2 glycine lysine H2 N C COOH CH2 SH cysteine H H2 N C COOH CH2CH2 COOH glutamic acid Write down the structural formula for a dipeptide formed from one molecule of glycine and one of lysine. [Total 2 marks] Examiner’s comments Nearly all candidates scored both marks, although some who used an extended molecular formula ran into trouble. The correct answer for that would be H2NCH2CONHCH[(CH2)4NH2]COOH. A few did not choose the correct amino acids. 7|Page Past paper questions Leucine (2-amino-4-methylpentanoic acid) is a naturally occurring α-amino acid that is often used in protein supplements. Leucine has a structural formula of (CH3)2CHCH2CH(NH2)COOH. (a) (i) State the general formula of an α-amino acid. ........................................................................................................... [1] (ii) Draw a displayed formula of leucine. [1] (b) Leucine can exist as a zwitterion. (i) State what is meant by the term zwitterion. ........................................................................................................... ........................................................................................................... [1] (ii) Explain with the aid of a diagram how the zwitterion is formed from the functional groups in leucine. ........................................................................................................... ........................................................................................................... ........................................................................................................... [2] [Turn over] 8|Page (c) Leucine can be obtained from a source of protein such as meat. (i) State suitable reagents and conditions to break down a protein into amino acids. ........................................................................................................... ........................................................................................................... [2] (ii) State the type of reaction occurring. ........................................................................................................... [1] [Total 8 marks] Examiner’s comments (a) Most candidates knew the general formula of an α-amino acid and there were few who were confusing it with the type of general formula used to represent an homologous series. Many could also successfully interpret the structural formula of leucine given. (b) A significant number of candidates tried to define a zwitterion in terms of the proton transfer process (as was required in part (ii) of this question). For the definition, it needs to be clear that both positive and negative charges are on the same molecule. (c) Conditions for the hydrolysis of a protein were well known, with a suitable named aqueous acid, base or enzyme being accepted. Dehydrating acids such as concentrated sulphuric acid are not suitable for hydrolysis. 9|Page Past paper questions Compound A is currently being tested as a possible anti-allergic drug. O OH C CH2 CH2 H N H C C H O H CH2 N C C H O H H N C H OH C O compound A Compound A can be hydrolysed to form three organic products. (i) Name a suitable reagent and conditions for the hydrolysis of compound A. .................................................................................................................... .................................................................................................................... [2] (ii) The three organic products all belong to the same class of compound. State the general name for this class of organic compound. .................................................................................................................... [1] (iii) Draw the structure of one of the organic products from the hydrolysis of A using the reagent you have given in (a)(i) above. [2] (iv) Explain what is meant by the term hydrolysis. Use this reaction to illustrate your answer. .................................................................................................................... .................................................................................................................... .................................................................................................................... [2] [Total 7 marks] 10 | P a g e Examiner’s comments A suitable aqueous acid or alkali had to be identified for the hydrolysis of a peptide, but it is also necessary to heat this mixture under reflux, as the peptide bond is relatively hard to break. Most candidates knew that amino acids are formed and could draw the structure of one of them. However very few picked up the cue to give the correct ionic form for the reagent that they had used. Hydrolysis as the reaction with water to split the compound, in this case by splitting the peptide bond, was only well described by the better candidates. Internal structure of an HIV particle showing the capsid surrounding the RNAcontaining core in red and the membrane in blue. The yellow area is electron dense material, including proteases, between the core and the membrane. Credit Stephen Fuller, Wellcome Images 11 | P a g e 3. Optical isomerism Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Describe optical isomers as non-superimposable mirror images about an organic chiral centre. Identify chiral centres in a molecule of given structural formula. Explain that optical isomerism and E/Z isomerism are types of stereoisomerism. Key areas to concentrate on… You need to know how to spot chiral carbon atoms within structures and thus optical isomers. You must be able to draw both non-superimposable mirror images. These diagrams must be in 3D. You should always draw the isomers as mirror images, with the geometry around the chiral carbon shown as a tetrahedral shape. 12 | P a g e Past paper questions One of the final stages in winemaking involves the fermentation of malic acid to lactic acid. An equation for the reaction is shown below. O C HO H OH C C H H O C H OH malic acid H OH C C H H O C + CO2 OH lactic acid Both acids contain a chiral centre. (i) Identify the chiral centre on the structure of malic acid above using an asterisk *. [1] (ii) Draw a diagram to show the 3-D arrangement of groups around the chiral centre in malic acid. [1] [Total 2 marks] Examiner’s comments Almost all candidates correctly identified the chiral centre in the given malic acid structure. For the 3-D structure of the molecule, the two structures shown below were acceptable. CH2COOH CH2COOH H HO C or COOH HO (1) 13 | P a g e C H COOH (1) Past paper questions Glutamic acid and glycine are both -amino acids that occur widely in living organisms. Their structures are shown below. H H2N C H H2N COOH CH2 C COOH H CH2 COOH glutamic acid (a) (i) glycine State the general formula for an -amino acid. ........................................................................................................... [1] (ii) Explain how glutamic acid and glycine both fit the general formula given in part (i) ........................................................................................................... ........................................................................................................... ........................................................................................................... [2] (b) Amino acids react with both acids and alkalis. Draw structures below to show how the glutamic acid molecule is changed in the presence of excess acid and alkali. H H2N C COOH CH2 excess HCl(aq) CH2 excess NaOH(aq) COOH glutamic acid [5] 14 | P a g e (c) In this question, one mark is available for the quality of use and organisation of scientific terms. Glutamic acid exists as two optical isomers, but glycine does not. Explain what structural feature causes optical isomerism in organic molecules. Include appropriate diagrams and use these two amino acids to illustrate your answer. .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [7] Quality of Written Communication [1] [Total 16 marks] 15 | P a g e Examiner’s comments (a) Most could state the general formula of an α-amino acid, but only a few could put into words that the amino and carboxylic acid groups are attached to the first carbon and that the R group is different in the two examples given. (b) The zwitterions were well known by all but the weakest candidates, although a few who had learnt the general case did not ionise the carboxylic acid group on the side chain as well. (c) This part was well answered by the majority of candidates and it is clear that most are confident with the explanation of optical isomerism. A few lost marks by not attempting to draw 3-dimensional structures for glutamic acid, and some of those that did, were not sure where the two perspective bonds are relative to the other two bonds. Some candidates would find it useful to practise drawing the 3-D tetrahedral structure to avoid the more subtle errors as shown below. correct 3-d tetrahedral 16 | P a g e tetrahedral, but incorrect 3-d not tetrahedral (90° angle) 4. Condensation polymerisation - polyesters Unit 1 – Rings, polymers and analysis Polymers and synthesis Done Describe condensation polymerisation forming polyesters, such as Terylene and poly(lactic acid). State the use of polyesters as fibres in clothing. Key areas to concentrate on… You must be able to show condensation polymerisation from given monomers. It is often a good idea to draw more than one complete unit of a polymer and to circle one complete unit. Check that all the atoms circled are equivalent to both the monomers minus two hydrogen atoms and one oxygen atom. Polyesters have an ester link between the monomers – e.g. Terylene, Polylactic acid. Polyamides have an amide (peptide) link between the monomers – e.g. Nylon, Kevlar. Both types of polymer can be converted back to monomers by hydrolysis. 17 | P a g e 5. Condensation polymerisation - polyamides Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Describe condensation polymerisation to form the polyamides nylon-6,6 and Kevlar. State the use of polyamides as fibres in clothing. Key areas to concentrate on… You must be able to show condensation polymerisation from given monomers. It is often a good idea to draw more than one complete unit of a polymer and to circle one complete unit. Check that all the atoms circled are equivalent to both the monomers minus two hydrogen atoms and one oxygen atom. Polyesters have an ester link between the monomers – e.g. Terylene, Polylactic acid. Polyamides have an amide (peptide) link between the monomers – e.g. Nylon, Kevlar. Both types of polymer can be converted back to monomers by hydrolysis. Iran hosting its first fashion and costume-design festival, December 2008 18 | P a g e Past paper questions Kevlar is a very tough polymer made from 1,4-diaminobenzene and benzene1,4-dicarboxylic acid. (i) State a use for Kevlar. .................................................................................................................... [1] (ii) Describe the polymerisation reaction that forms Kevlar. Include in your answer: • an explanation of the type of polymerisation involved • an equation for the reaction • a repeat unit to show the structure of Kevlar. .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [5] [Total 6 marks] Examiner’s comments Most candidates had a good understanding of condensation polymerisation and knew the formation of Kevlar from its monomers. Uses of Kevlar were accepted as long as they required a particularly strong fibre. 19 | P a g e 6. Addition and condensation polymerisation Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Compare condensation polymerisation with addition polymerisation. Suggest the type of polymerisation from a given monomer or pair of monomers, or a given section of a polymer molecule. Identify the monomer(s) required to form a given section of a polymer (and vice versa). Key areas to concentrate on… You must be able to show condensation polymerisation from given monomers. It is often a good idea to draw more than one complete unit of a polymer and to circle one complete unit. Check that all the atoms circled are equivalent to both the monomers minus two hydrogen atoms and one oxygen atom. Polyesters have an ester link between the monomers – e.g. Terylene, Polylactic acid. Polyamides have an amide (peptide) link between the monomers – e.g. Nylon, Kevlar. Both types of polymer can be converted back to monomers by hydrolysis. Sometimes you will be asked to predict the monomers which made up a polymer. This could be applied to the addition polymers you covered in AS Unit F322: Module 2 - Alcohols, halogenoalkanes and analysis. 20 | P a g e Past paper questions Poly(phenylethene) is one of the most versatile and successful polymers. The 3-D skeletal formula of a section of atactic poly(phenylethene) is shown in the diagram below. (i) State the type of polymerisation used to make poly(phenylethene). .................................................................................................................... [1] (ii) Draw a skeletal or displayed formula to show the monomer used to make poly(phenylethene). [1] (iii) Outline how the polymer is formed from the monomer molecules. (You do not need to give any details of the catalyst or conditions involved.) .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [2] [Total 4 marks] Examiner’s comments Addition polymerisation and the structure of phenylethene were well known. However fewer candidates pointed out that this process involves the π-bond breaking and that many molecules join in order to give a polymer. Many just described addition generally. 21 | P a g e Past paper questions The fibres used in carpets are made from synthetic or natural polymers such as nylon-6,6, OrlonTM and wool. (a) Complete the table below. OrlonTM nylon-6,6 O monomer(s) HO O C (CH2)4 C H2N (CH2)6 NH2 OH repeat unit of the polymer H CN C C H H type of polymerisation [4] (b) Nylon-6,6 can be made from its monomers in the laboratory in two stages as shown below. O HO C O (CH2)4 C OH stage 1 Not in the new specification, but PCl5 or SOCl2 is an appropriate reagent to convert carboxylic acids to acyl chlorides. O Cl C O (CH2)4 C Cl H2N (CH2)6 NH2 stage 2 nylon-6,6 (i) State a suitable reagent to carry out stage 1. ........................................................................................................... [1] (ii) Deduce the inorganic product that is also formed in stage 2. ........................................................................................................... [1] 22 | P a g e (c) Industrially, nylon-6,6 is not manufactured by the method in (b). Instead, the two monomers are mixed directly at room temperature to give a salt. This salt is then heated to convert it to nylon-6.6. Suggest the structures of the two ions present in this salt. [2] (d) Wool is a protein. It is a natural polymer made by the same type of polymerisation as nylon-6,6. A section of the polymer chain in a protein is shown below. H O N C C H CH2 H2C O N C C H H H O N C C H H H O N C C H CH3 OH (i) How many monomer units does this section contain? ........... [1] (ii) Draw the structure of one of the monomer molecules that was used to form this section. [1] [Turn over] 23 | P a g e (iii) State three ways in which the monomer units of a protein differ from those of nylon-6,6. ........................................................................................................... ........................................................................................................... ........................................................................................................... ........................................................................................................... ........................................................................................................... [3] [Total 13 marks] Examiner’s comments (a) Many candidates scored full marks on this part and demonstrated a good understanding of addition and condensation polymerisation. The most common error was to not show a correct repeat for nylon-6,6. (b) Once again this reaction is new to the specification, and relatively few candidates could identify PCl5 or SOCl2 as an appropriate reagent to convert a carboxylic acid into an acyl chloride. However, a greater number did deduce that HCl would be made when the amide was formed. (c) A pleasing number of candidates correctly identified the diamino and dicarboxylate ions that would form by the acid/base reaction between the nylon monomers. A few interpreted the question as just asking for the two ionic functional groups and did not give the complete structures. Partial credit was given for this. (d) Nearly all candidates identified that the section of protein was formed from four monomers, and most successfully drew the structure of one of the amino acids. The last part elicited a wide range of answers and candidates were credited for all as long as they didn’t try to give the same point twice or restate what was given in the question. Good suggestions included that protein monomers were bifunctional, that they were chiral, that they could form zwitterions, that there were a greater variety of monomers or specific references to their atomic composition compared to that of nylon-6,6. 24 | P a g e Past paper questions Nylon is sometimes used for electrical insulation. However, if there is a risk of high temperatures then a polymer such as Nomex®, with a higher melting point, is used. The repeat unit of Nomex® is shown below. (i) O O C C N N H H n Draw the structures of two monomers that could be used to form Nomex®. [2] (ii) Suggest a reason why the melting point of Nomex® is higher than that of nylon. .................................................................................................................... .................................................................................................................... .................................................................................................................... [1] [Total 3 marks] Examiner’s comments Most candidates could deduce the structures of the monomers that could be used to form the given polymer, although a common error was to draw 1,4-substituted benzene rings instead of the 1,3-substituted rings needed in this case. For the last part, any sensible suggestion that could explain greater intermolecular forces between the polymer chains was accepted. 25 | P a g e 7. Breaking down condensation polymers Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Describe the acid and base hydrolysis of polyesters and polyamides. Outline the role of chemists in the development of degradable polymers. Explain that condensation polymers may be photodegradable and may be hydrolysed. Key areas to concentrate on… Polyesters have an ester link between the monomers – e.g. Terylene, Polylactic acid. Polyamides have an amide (peptide) link between the monomers – e.g. Nylon, Kevlar. Both types of polymer can be converted back to monomers by hydrolysis. The conditions for hydrolysis are always aqueous acid or aqueous base in the presence of heat. Aqueous implies water and hydrolysis means the breaking of a bond with a water molecule. The means that water must be present! Fish swim along a coral reef near a water bottle label and a plastic bag off the coast of a Red Sea resort Photograph: Mike Nelson/EPA 26 | P a g e Biodegradable plastic bags carry more ecological harm than good Decomposing bags sound environmentally friendly but they require a lot of energy to make, won't degrade in landfills and may leave toxic leftovers. Biodegradable plastic bags – as handed out by Tesco, the Co-op and once even sold by the Soil Association – must be good, surely? They have a magic ingredient that means they self-destruct after a few months, breaking up into tiny pieces made of simple molecules that bugs and fungi can happily munch up. Dozens of major corporations use them, including Pizza Hut, KFC, News international, Walmart and Marriott hotels. But last week, the European Plastics Recyclers Association warned that they "have the potential to do more harm to the environment than good." Technically what we are talking about here is "oxo-degradable" plastics. These are plastics made to degrade in the presence of oxygen and sunlight, thanks to the addition of tiny amounts of metals like cobalt, iron or manganese. British manufacturers – headed by Symphony Technologies of Borehamwood – are at the sharp end of a revolution that could banish bag-strewn beauty spots and back alleys alike. But the criticisms are twofold. First, some research suggests that the bags don't degrade as well as claimed. And second, priming plastic bags for destruction is itself an ecological crime. So, do they really biodegrade away to nothing? Symphony, which supplies the Co-op and Tesco, says its bags are "able to degrade completely within about three years, compared to standard bags which take 100 years or longer". Tesco reckons they all decompose within 18 months "without leaving anything that could harm the environment". But whether it actually happens seems to depend a lot on where the "biodegradable" plastic ends up. If it gets buried in a landfill it probably won't degrade at all because there is no light or oxygen. But what about elsewhere? Studies of one brand in the US, commissioned by the Biodegradable Products Institute, found that breakdown is very dependent on temperature and humidity. It goes slow in cold 27 | P a g e weather. And high humidity virtually stops the process, making long, wet winters sound like bad news. You might think a compost heap full of biodegrading bugs would be ideal. But a recent Swedish study found that polyethylene containing manganese additive stops breaking down when put in compost, probably due to the influence of ammonia or other gases generated by microorganisms in the compost. And, while most manufacturers say that to put only tiny amounts of metals into the plastic, the US study found that one brand contained "very high levels of lead and cobalt", raising questions about the toxicity of the leftovers. Neither of these studies relates specifically to Symphony's products. But they raise questions. The European Plastics Recyclers Association last week argued that biodegradable bags are not the right environmental option anyway. Plastic bags take a lot of energy and oil to make so why waste them by creating bags that self-destruct? "It is an economic and environmental nonsense to destroy this value," the recyclers' trade association concluded. Of course, we consumers can reuse or recycle biodegradable bags as easily as any other kind. Symphony and other manufacturers stress making bags biodegradable is just an insurance policy for those that don't get recycled or reused. But surely we are less likely to bother if we are told the bags are eco-bags that biodegrade. This European backlash against oxo-biodegradable plastics follows similar rumblings in the US. In March, the New York Times announced it would not be wrapping its paper in bags made of the stuff because claims that the plastic was "100% biodegradable" did not stand up. This followed a ruling last December by an advertising industry watchdog, part of the US Council of Better Business Bureaus, that makers should stop calling the bags "ecofriendly". (In marked contrast, the UK Periodical Publishers Association two years ago recommended that all its members use oxo-biodegradable film to wrap their magazines) Industry websites, including Symphony's, do proudly proclaim one green endorsement – that the organic trade body the Soil Association buys their bags. But Clio Turton at the Soil Association told me: "We've had problems with people making these claims. We have asked for them to be removed. It's very frustrating." Plastic bags are not the biggest environmental issue on the planet, as George Monbiot explained in a blog here recently. But most of us probably make "bag choices" several times a day. Brits get through 8bn plastic bags a year. For that reason, they are one of the choices that tend to show if we care about the environment or not. And we should be clear. Re-using bags is best. Recycling is second best. Throwing them away in the hope that a magic formula will guarantee their rapid disappearance is laziness, not environmental care. And anybody who tries to persuade us otherwise is guilty of Greenwash. 28 | P a g e • This article was amended on Friday 19 June 2009. We should have made clear that the Soil Association no longer sells the biodegradable plastic bags referred to in this article. This has been corrected. guardian.co.uk © Guardian News and Media Limited 2009 Thursday 18 June 2009 11.00 BST Past paper questions Short sections of the molecular structures of two polymers are shown below. H H H H H H C C C C C C H H H polymer C O O C C O H H C C H H O O O C C O H H C C H H O polymer D (a) (i) Circle, on the diagrams above, the simplest repeat unit in each polymer. [2] (ii) In the boxes below, draw the displayed formulae of the two monomers that could be used to prepare polymer D. [2] (b) Chemists have developed degradable polymers to reduce the quantity of plastic waste being disposed of in landfill sites. Polymer D is more likely to be a ‘degradable polymer’ than polymer C. Suggest two reasons why. .................................................................................................................... 29 | P a g e .................................................................................................................... .................................................................................................................... [2] [Total 6 marks] 30 | P a g e 8. Organic synthesis of aliphatic compounds Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Identify the functional group in an aliphatic molecule containing several functional groups. Predict properties and reactions of aliphatic molecules containing several functional groups. Devise multi-stage synthetic routes for preparing aliphatic organic compounds. Key areas to concentrate on… Synthesis can involve any functional group from within the specification. It relies upon the candidate’s ability to convert from one functional group to another, so you must have a good knowledge of all aspects of the organic chemistry covered during your A level course. 31 | P a g e 9. Organic synthesis of aromatic compounds Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Identify the functional groups in an aromatic molecule containing several functional groups. Predict the properties and reaction of an aromatic molecule containing several functional groups. Devise multi-stage synthetic routes for preparing aromatic organic compounds. Key areas to concentrate on… Synthesis can involve any functional group from within the specification. It relies upon the candidate’s ability to convert from one functional group to another, so you must have a good knowledge of all aspects of the organic chemistry covered during your A level course. 32 | P a g e 10. Chirality in pharmaceutical synthesis Unit 1 - Rings, polymers and analysis Polymers and synthesis Done Explain that the synthesis of pharmaceuticals often requires the production of a single optical isomer. Explain that synthetic molecules often contain a mixture of optical isomers, whereas natural molecules often have only one optical isomer. Explain that the synthesis of a pharmaceutical that is a single optical isomer increases costs, reduces side effects and improves pharmacological activity. Describe strategies for the synthesis of a pharmaceutical with a single optical isomer. Key areas to concentrate on… You must understand the problems of chirality when synthesising novel pharmaceuticals and how pharmaceutical companies go about removing the unwanted isomer. 33 | P a g e Past paper questions Compound A, shown below, contributes to the smell and taste of black tea and is a component in jasmine oil. O O O (i) A Deduce the molecular formula of compound A. ........................................................... [1] (ii) Compound A contains several functional groups. Identify, by name, the functional groups in compound A. .................................................................................................................... .................................................................................................................... .................................................................................................................... [3] (iii) Compound A is a stereoisomer. On the structure above, • mark each feature responsible for stereoisomerism with an asterisk, *, • label each feature with the type of stereoisomerism. [2] (iv) Outline two important factors that pharmaceutical companies need to consider when manufacturing chiral compounds for use as medicines. .................................................................................................................... .................................................................................................................... .................................................................................................................... [2] [Total 8 marks] 34 | P a g e Past paper questions Noradrenaline is produced naturally by nerve cells in the brain. Compound P is a synthetic compound that has been widely used as an appetite suppressant. It is thought to be effective because it is similar to noradrenaline. OH OH HO NH2 CH3 HO noradrenaline (a) (i) NH2 compound P Suggest a reagent that could be used in a test to distinguish compound P from noradrenaline. ........................................................................................................... [1] (ii) Draw a ring round the functional group responsible for the positive result in the test you have chosen. [1] (iii) State the expected observation for the positive result in the test you have chosen. ........................................................................................................... [1] (b) Both these compounds have stereoisomers due to the presence of chiral centres. (i) Identify the chiral centres in each molecule by labelling them clearly with asterisks (*) on the structures above. [2] (ii) State the type of stereoisomerism caused by the presence of chiral centres. ........................................................................................................... [1] (iii) Using noradrenaline as an example, explain how a chiral centre gives rise to the stereoisomers. Illustrate your answer with a suitable diagram of the stereoisomers. ........................................................................................................... ........................................................................................................... ........................................................................................................... [3] 35 | P a g e (c) Explain why a pharmaceutical company may produce an appetite suppressant containing only one stereoisomer of compound P, rather than a mixture of the stereoisomers. .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [3] [Total 12 marks] Examiner’s comments (a) For this part a reagent that reacted with phenols and not with alcohols was needed. Decolourising bromine water was the most common correct answer although other valid responses with correct observations, such as NaOH(aq) and neutral FeCl3 were also accepted. Candidates generally found this harder than the chemical tests earlier in the paper. (b) Nearly all candidates identified the chiral centre in noradrenaline, but only a few spotted that compound P would have two chiral centres. However, many candidates had a good attempt at drawing the optical isomers of noradrenaline. To obtain full credit, valid use of the 3-D ‘wedge’ and ‘dotty’ bonds was needed and the groups had to be connected to the chiral carbon by the correct atom. See the mark scheme for examples of correct representations. Candidates do need to practise drawing these to become confident at 3-D representations. (c) Many candidates knew that a drug containing a mixture of stereoisomers could result in harmful side-effects and the need for higher doses. However, for full credit candidates also needed to explain that this was because only the correct isomer would have the right 3-D shape to be pharmacologically active. 36 | P a g e Past paper questions Compound A is currently being tested as a possible anti-allergic drug. O OH C CH2 CH2 H N H C C H O H CH2 N C C H O H H N C H OH C O compound A Compound A can exist as a number of stereoisomers, but only one of them is pharmacologically active as the anti-allergic drug. (i) Explain what causes stereoisomerism in compounds such as A. .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [3] (ii) Explain why there are four different stereoisomers of compound A. .................................................................................................................... .................................................................................................................... .................................................................................................................... [2] (iii) Suggest how a drug company could synthesise compound A so that the drug contains only the pharmacologically active stereoisomer. .................................................................................................................... .................................................................................................................... [1] [Turn over] 37 | P a g e (iv) Sometimes it is difficult to manufacture a drug containing only the one pharmacologically active stereoisomer. Describe two possible disadvantages of producing a drug containing a mixture of several stereoisomers. .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... .................................................................................................................... [2] [Total 8 marks] Examiner’s comments Optical isomerism and its implications for drug synthesis were well described overall. There is a range of possible ways to synthesise only the correct isomer, including starting with chiral compounds using a stereospecific catalyst (such as an enzyme) or separating the mixture by a suitable method such as chromatography. Some candidates thought that production of a mixture might be disadvantageous because it would be expensive to separate. However this is still sometimes the cheapest approach if a suitable catalyst is not available. 38 | P a g e Sample student answers Module 2: Polymers and synthesis Question 1 (a) Total marks: 15 Glycine H2N–CH2–COOH and alanine H2N–CH(CH3)–COOH are two amino acids. (i) Give the systematic name of alanine. (ii) Explain why glycine does not have optical isomers but alanine does. (iii) Draw a diagram to show the two optical isomers of alanine. (iv) Write the equation to show the reaction between glycine and dilute hydrochloric acid. (v) Write the equation to show the reaction between glycine and aqueous sodium hydroxide. Marks available: (i) 1 (ii) 1 (iii) 2 (iv) 1 (v) 1 Student answer: (a) (i) 2-aminopropanoic acid (ii) 2-aminopropanoic acid (alanine) has a carbon (at position number two) with four different groups bonded to it. Aminoethanoic acid (glycine) does not have any such carbon atoms. (iii) (iv) H2N–CH2–COOH + HCl + H3N–CH2–COOH + Cl – – + (v) H2N–CH2–COOH + NaOH H2N–CH2–COO Na + H2O Examiner comments: (a) (i) The 2 is very important here as it denotes that the amine group (NH2) is present on the second carbon in the chain. (ii) It would be acceptable to use the term chiral without explaining what this term means. The glycine molecule does not possess a carbon atom that has four different groups attached to it, having: one –NH2 group; one –COOH group; but two –H groups. (iii) The diagram must be drawn to represent a 3D drawing. The bonds from the central carbon atom must be attached to the correct atom on the group – i.e. the N of the NH2 group and the C of the COOH group. (iv) It is also acceptable to write the equation in structural form. (v) You must remember to include the water molecule as a product of this reaction. 39 | P a g e (b) Amino acids have isoelectric points. (i) What is meant by the term isoelectric point? (ii) The isoelectric point of alanine is pH = 6.0. Draw the structure of alanine at pH = 7.0. Marks available: (i) 1 (ii) 1 Student answer: (b) (i) The pH at which an amino acid exists as a zwitterion (ii) Examiner comments: (b) (i) This point varies according to the amino acid. (ii) Despite being neutral, the pH of the solution is more alkaline than the isoelectric point for alanine, so the alkaline form of the zwitterion exists. (c) Draw the displayed formula of a dipeptide formed when alanine and glycine react. Circle the functional group and give its name. Marks available: 3 Student answer: (c) Examiner comments: (c) There is an alternative form in which the amino acids swap places, but the peptide link remains in the same position. 40 | P a g e (d) Alanine can be produced in the laboratory by the following reaction scheme. CH3COCOOH CH3CH(OH)COOH CH3CHClCOOH CH3CH(NH2)COOH (i) However, this manufactured alanine could not readily be used for making proteins within a living organism. Explain why not. (ii) There are 20 or so naturally-occurring amino acids. These can combine and link together to form chains consisting of varying orders of amino acids. Amino acid chains can be formed from just the following three amino acids: A; B; and C. Determine how many different chains of three amino acids can be formed using just these three amino acids. Marks available: (i) 3 (ii) 1 Student answer: (d) (i) Alanine is a chiral compound. Any chiral molecules which are found within living organisms consist of the one optical isomer only. The manufactured sample of the amino acid will contain a 50:50 mixture of both optical isomers. Because when 2hydroxypropanoic acid, CH3CH(OH)COOH, is made in stage 1, there is a 50% chance that either optical isomer would form. (ii) 27. Examiner comments: (d) (i) Any chiral product produced in a laboratory will be a 50:50 mixture unless certain measures are taken during the manufacturing process. (ii) One amino acid can only be arranged in one way, two amino acids can be arranged in 2 × 2 i.e. four different ways, and three amino acids can be arranged in 3 × 3 ×3 different ways. 41 | P a g e Module 2: Polymers and synthesis Question 2 (a) Total marks: 15 Kevlar is a polyamide used in the manufacture of bulletproof material. It is made from benzene-1,4-diamine and benzene-1,4-dicarboxylic acid. Draw a section of this polymer showing two repeat units. Marks available: 2 Student answer: (a) Examiner comments: (a) Ensure the end bonds go through the surrounding brackets. (b) Nylon-6,6 has the following structure: - (CO–(CH2)4–CONH–(CH2)6–NH) n. (i) Draw the structures of the molecules from which nylon-6,6 is synthesised. (ii) A number of other nylons also exist, for example, nylon-6,8 and nylon-5,10. What do the numbers 6,8 and 5,10 represent? (iii) Suggest the structure of two repeat units of nylon-6. Marks available: (i) 2 (ii) 1 (iii) 2 Student answer: (b) (i) HOOC–CH2–CH2–CH2–CH2–COOH H2N–CH2–CH2–CH2–CH2–CH2–CH2–NH2 (ii) The number of carbon atoms in the molecules from which the polymer is synthesised from (iii) -(CO– (CH2)5–NHCO–(CH2)5–NH) peptide (amide) link two units. Examiner comments: (b) (i) The structures can be abbreviated to HOOC–(CH2)4–COOH and H2N–(CH2)6–NH2. (ii) In these examples nylon-6,8 would be synthesised from one molecule containing six carbon atoms and another containing eight carbon atoms; while nylon-5,10 would be formed from a molecule containing five carbon atoms and another containing 10 carbon atoms. (iii) Again, ensure the end bonds go through the surrounding brackets. 42 | P a g e (c) Terylene is a polyester made from benzene-1,4-dicarboxylic acid and ethane-1,2-diol. Draw a section of this polymer showing two repeat units. Marks available: 2 Student answer: (c) Examiner comments: (c) Note the end bonds go through the surrounding brackets. (d) Lactic acid (2-hydroxypropanoic acid) can undergo polymerisation to form poly(lactic acid). (i) Write the equation for the production of this polymer. (ii) Poly(lactic acid) is a biodegradable polymer. Give an example of one use for poly(lactic acid) which depends upon its biodegradability. (iii) Why should society be encouraging further development of biodegradable polymers? Marks available: (i) 3 (ii) 1 (iii) 2 Student answer: (d) (i) nHO–CH(CH3)–COOH ( O–CH(CH3)–CO) n + nH2O monomer polymer (ii) Internal medical stitches. (iii) Ease of disposal. Unless recycled, current non-biodegradable polymers need to be either buried in landfill sites which are filling up or combusted releasing polluting gases. Examiner comments: (d) (i) Condensation polymers often eliminate H2O molecules when the monomers combine. (ii) Any use which depends upon biodegradability of material would do – e.g. bioplastics, food packaging, nappies, compost bags and disposable tableware, PLA. (iii) There is no requirement here to list the toxic gases – e.g. CO, HCl, HCN, etc. 43 | P a g e 2 9.0 Be beryllium 4 24.3 Mg magnesium 12 40.1 Ca calcium 20 87.6 Sr strontium 38 137.3 Ba barium 56 [226] Ra radium 88 1 44 | P a g e 6.9 Li lithium 3 23.0 Na sodium 11 39.1 K potassium 19 85.5 Rb rubidium 37 132.9 Cs caesium 55 [223] Fr francium 87 89 actinium [227] Ac* 57 lanthanum 39 138.9 La* yttrium 21 88.9 Y scandium 45.0 Sc • • • • • • 73 72 neodymium 60 uranium 92 140.9 Pr praseodymium 59 [231] Pa protactinium 91 140.1 Ce cerium 58 232.0 Th thorium 90 238.1 U 144.2 Nd 106 105 104 seaborgium dubnium [266] Sg 74 93 neptunium [237] Np 61 promethium 144.9 Pm 107 bohrium [264] Bh 75 rhenium 43 186.2 Re tungsten technetium 42 183.8 W 25 [98] Tc manganese 54.9 Mn molybdenum 24 95.9 Mo chromium 52.0 Cr rutherfordium [262] Db tantalum hafnium [261] Rf 41 180.9 Ta niobium 23 92.9 Nb vanadium 50.9 V 40 178.5 Hf zirconium 22 91.2 Zr titanium 47.9 Ti atomic (proton) number name Key relative atomic mass atomic symbol 94 plutonium [242] Pu 62 samarium 150.4 Sm 108 hassium [277] Hs 76 osmium 44 190.2 Os ruthenium 26 101.1 Ru iron 55.8 Fe 58.9 Co 58.7 Ni 63.5 Cu 65.4 Zn 95 americium [243] Am 63 europium 152.0 Eu 109 meitnerium [268] Mt 77 iridium 45 192.2 Ir rhodium 27 102.9 Rh cobalt 96 curium [247] Cm 64 gadolinium 157.2 Gd 110 darmstadtium [271] Ds 78 platinum 46 195.1 Pt palladium 28 106.4 Pd nickel 97 berkelium [245] Bk 65 terbium 158.9 Tb 111 roentgenium [272] Rg 79 gold 47 197.0 Au silver 29 107.9 Ag copper zinc 81 thallium 49 204.4 Tl indium 31 114.8 In gallium 82 lead 50 207.2 Pb tin 32 118.7 Sn germanium 14 72.6 Ge silicon 6 28.1 Si carbon 83 bismuth 51 209.0 Bi antimony 33 121.8 Sb arsenic 15 74.9 As phosphorus 7 31.0 P nitrogen 14.0 N 84 polonium 52 [209] Po tellurium 34 127.6 Te selenium 16 79.0 Se sulfur 8 32.1 S oxygen 16.0 O 85 astatine 53 [210] At iodine 35 126.9 I bromine 17 79.9 Br chlorine 9 35.5 Cl fluorine 19.0 F 86 radon 54 [222] Rn xenon 36 131.3 Xe krypton 18 83.8 Kr argon 10 39.9 Ar neon 20.2 Ne 98 californium [251] Cf 66 dysprosium 162.5 Dy 99 einsteinium [254] Es 67 holmium 164.9 Ho 100 fermium [253] Fm 68 erbium 167.3 Er 101 mendelevium [256] Md 69 thulium 168.9 Tm 102 nobelium [254] No 70 ytterbium 173.0 Yb 103 lawrencium [257] Lr 71 lutetium 175.0 Lu Elements with atomic numbers 112–116 have been reported but not fully authenticated 80 mercury 48 200.6 Hg cadmium 30 112.4 Cd 13 69.7 Ga aluminium 5 27.0 Al boron 12.0 C 2 10.8 B 0 helium 7 1 6 hydrogen 5 4.0 He 4 1.0 H 3 The Periodic Table of the Elements The Periodic Table of the Elements Characteristic infrared absorptions in organic molecules bond location wavenumber/cm –1 C–O alcohols, esters, carboxylic acids 1000–1300 C=O aldehydes, ketones, carboxylic acids, esters, amides 1640–1750 C–H organic compound with a C–H bond 2850–3100 O–H carboxylic acids 2500–3300 (very broad) N–H amines, amides 3200–3500 O–H alcohols, phenols 45 | P a g e 3200–3550 (broad)
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