MISSION Every day, we strive to eliminate the world’s most devastating infectious diseases. VISION We envision a world where people live free from the threat of infectious disease. ABOUT SEATTLE BIOMED Seattle Biomedical Research Institute (Seattle BioMed) is the largest, independent, non-profit research institute in the U.S. focused solely on the world’s most devastating infectious diseases. More than 325 strong, we are dedicated to reducing human suffering and saving lives by converting knowledge into solutions. Our research is the foundation for new vaccines, drugs and diagnostics that will benefit those who need our help most: the 14 million who will otherwise die each year from infectious diseases. DISEASE FOCUS Emerging & Neglected Diseases African sleeping sickness Amebiasis Chagas’ disease Fungal infections Leishmaniasis Toxoplasmosis HIV/AIDS Malaria Tuberculosis 307 Westlake Avenue North, Suite 500 Seattle, Washington 98109-5219 USA Phone: 206.256.7200 Fax: 206.256.7229 seattlebiomed.org © 2010 Seattle Biomedical Research Institute. Printed on recycled paper. 2010 ANNUAL REPORT SEATTLE BIOMEDICAL RESEARCH INSTITUTE FREEDOM FROM INFECTIOUS DISEASE From our founder who envisioned a new research environment to our scientists who create new ways to tackle age-old diseases, Seattle BioMed is inspired by the vision of a world free from infectious disease. What’s Next? 360 Degree View How do scientists determine which Through a microscope lens and within pathogens involves studying the immune cells and how they respond to infection,” vaccine candidates to move to clinical the patterns of gene sequences, scientists said Nick Crispe, M.D., Ph.D., a malaria principal investigator whose area of trials? Principal Investigator Helen Horton, glimpse into the inner workings of cells. expertise is immunology. Ph.D., asked just this question. Her team For 35 years, Seattle BioMed has asked of researchers hopes to test a new in vitro questions about pathogens that cause vaccination model that will predict which disease. What makes latent TB suddenly HIV vaccines are likely to succeed in activate? How can we stop malaria human clinical trials. parasites moving from the liver stage “In vitro vaccination is basically a way to replicate immune cell responses in a Petri dish,” explains Horton. “This approach allows us to see how human immune cells will react to vaccines before testing them Ken Stuart, Ph.D. in more expensive preclinical models.” The Visionary Until recently, no one had used the in Seattle BioMed President and Founder Ken Stuart, Ph.D., readily confesses that his vaccine candidates. With support from passion for understanding parasites and the diseases they cause fueled his move a new grant awarded by the National into a research area neglected by U.S. scientists in the mid-1970s. Institutes of Health, Horton’s lab is using More concerning to Stuart was the way research was being conducted. “The landscape was dominated by academia and government labs,” he explained. “Scientists worked in small groups and were primarily located at large, complex vitro vaccination approach to test HIV to understand how TB bacteria, for example, are able to evade the immune system, we can develop strategies to circumvent it,” said Kevin Urdahl, M.D., Ph.D., a principal investigator in Seattle BioMed’s TB Program. looking at disease from the pathogen perspective, Seattle BioMed scientists are turning to immunology to sharpen our focus on the host perspective, enabling researchers to expand their view of disease from 180 to 360 degrees. “Understanding how a human or animal host deals with invading HIV that remain constant. in research.” is an extremely variable virus. June 1976, Stuart’s vision became a reality. Seattle BioMed is a place where this can happen. “If investigators can collaborate that target specific regions of The problem with HIV is that it and scientifically nimble, as well as collaborative both internally and externally. In closer to answering these questions by work in close collaboration with virologists, bacteriologists and parasitologists. this approach to test vaccines organizations with limited capacity for adaptation to rapidly developing changes Stuart envisioned a different type of organization – one that would be administratively to the blood stream? While we’ve come To effectively understand the host side of the equation, immunologists need to “It can change quickly – much faster than influenza virus, for Our solutions will have a global impact, helping everyone from people in Seattle to children in Southeast Asia. example,” said Horton. “It is the non-variable parts of HIV With a smile, Stuart says that Seattle BioMed might be his greatest experiment that we’ll test in a vaccine. If of all. Has the experiment he envisioned 35 years ago been successful? The we can confirm that HIV vaccine answer is “Yes, but….” Yes, it has been successful in centralizing research candidates are effective in our in capabilities and encouraging collaboration to accelerate science. Yes, it has vitro studies, then we can push been successful in raising awareness that scientific research is the first step in forward testing in a more improving global health. efficient, less costly manner “But,” said Stuart, “the experiment is still under way.” Each day we gain new that will lead to our ultimate knowledge that can lead to our ultimate vision – a world without infectious disease.” goal – an HIV vaccine.” HIV researchers Lynn Chen & Vasudha Sundaravaradan, Ph.D. FREEDOM FROM INFECTIOUS DISEASE On the Offense Ashley Vaughan, Ph.D., holds a football in his hand – an unlikely sight in the middle of a malaria lab. Using the football as a stand-in for the human liver, Vaughan offers insight into how the malaria parasite invades the liver. In the complex malaria life cycle, Vaughan explains, the liver stage of the disease presents a bottleneck that could be the best point of attack, and Seattle BioMed researchers are launching an offensive. Stefan Kappe, Ph.D., has developed a weakened whole organism vaccine candidate aimed at the liver stage. The first generation vaccine candidate was created by deletions of two genes, but Kappe hasn’t stopped there. “We are already making significant advances in the development of nextgeneration attenuated vaccine strains,” he explained. While malaria has been around thousands of years and the malariacausing parasite was discovered more than 100 years ago, the liver stage of the disease is relatively new – discovered in 1948 – so there’s much still to be learned. Ruobing Wang, M.D., Ph.D., set her sights on finding the unique immune responses to the parasite while in the liver. “We are identifying immune biomarkers of protection that could be used to select antigens for the development of effective subunit vaccines,” she explained. Meanwhile, Malcolm Gardner, Ph.D., is developing in vitro tests to determine if experimental drugs can kill the liver stage parasite. While the ultimate goal is new drugs and vaccines, Kappe states it more simply. “We want to create a situation where the parasites check into the liver, but they never check out,” he said, with a laugh. [continued] From Vision to Reality Three years ago, Seattle BioMed didn’t have a tuberculosis program, and the lack of research focus on that disease was a nagging issue in Ken Stuart’s mind. Stuart formed a task force to discuss the idea, and the “It all started with an opportunity Nick Hasle Nick Hasle, an undergraduate at Shahin Shafiani Seattle BioMed’s scientists come feedback was not encouraging. High to participate in BioQuest Acad- Oxford University, came home to us from all around the world; hurdles were identified, including emy,” recalled Augustine Ajuogu to Washington for a summer in- many are from countries where about his zeal for global citizen- ternship at Seattle BioMed focused the burden of disease is a daily ship. BioQuest, an educational pro- on infectious disease research. “I’ve presence. That’s why Seattle gram of Seattle BioMed, educates always been fascinated with learn- BioMed looks both locally and high school students about the ing how things work,” said Hasle. internationally to train students importance of scientific research “As a child, my favorite book was in infectious disease research. Sha- the need for expensive specialized facilities, funding for research support and recruitment of key scientists. In typical fashion, Stuart forged ahead. He recruited a highly-regarded researcher, David Sherman, Ph.D., to lead the program, and sought the necessary funding. A major step came Training magnifies the power of our vision. in the form of a $5 million challenge grant from the Paul G. Allen Family and trains teens in college level about how the body works. I read hin Shafiani, originally from Iran, Foundation, for equipment and re- disciplines. “BioQuest’s focus on the chapter called ‘What makes participated in the Seattle-India search projects. A state-of-the-art lab global health gave me a reason to us sick?’ over and over again. I’m Joint Research Training Program, study, a passion to work for and compelled to look inside the micro- which provides a cause to stand for.” scopic world and understand how promising students with advanced it operates.” training in infectious disease was constructed, which in turn helped attract two more principal investigators, Christoph Grundner, Ph.D., and Now studying biology and math During his undergraduate research. During his training, Shafi- believes in a vision for the world internship, Hasle worked along- ani was mentored by Kevin Urdahl, that is really no different from that side scientists who investigate the M.D., Ph.D., a world-renowned ies. “Just as people need an alarm to of Seattle BioMed: to enable oth- pathogens causing African sleeping immunologist. The two formed a wake up, the latent form of tuberculo- ers to envision a world where ev- sickness, Chagas’ disease and lasting partnership and recently sis – found in one-third of the world’s eryone has a better quality of life. leishmaniasis. “Our goal was to joined Seattle BioMed’s Tubercu- population – requires a signal to “When people are given power understand how trypanosomes losis Program. Side by side, Urdahl move from latency to active disease,” and an idea, they act,” Ajuogu function so that we could identify and Shafiani are working explained Sherman. “Our research- said. “And I see a future like no drug targets,” Hasle explained. to discover new TB vaccines. ers have discovered how one ‘alarm other, where people are empow- “With this internship to draw clock’ – a blast of fresh oxygen – stirs ered to confront the challenges of from, I can pursue new goals Training Program gave me an latent TB from its slumber. Providing our time.” equipped with experience that opportunity to train with a brilliant will add tremendous value to immunologist and an excellent my future.” mentor,” said Shafiani, “and I feel Kevin Urdahl, M.D., Ph.D. And, there’ve already been discover- Ashley Vaughan, Ph.D. Augustine Ajuogu new insight into what makes TB tick is critical to developing faster-acting, at Northwestern University, Ajuogu “The Seattle-India Joint Research an immense sense of gratitude to more effective drugs.” We train at every level – from high school to postdoc – and teach from Seattle to labs in India, Africa and beyond. the program for the opportunity.” Seattle BioMed Leaders Grantors & Contractors Board of Trustees PRINCIPAL INVESTIGATORS American Medical Association Foundation Jerry Cangelosi, Ph.D., Affiliate Member American Society of Microbiology Dean Allen Chief Executive Officer McKinstry Nick Crispe, M.D., Ph.D., Full Member Amgen Foundation Michal Fried, Ph.D., Assistant Member Antigen Discovery, Inc. Malcolm Gardner, Ph.D., Full Member Bill & Melinda Gates Foundation Christoph Grundner, Ph.D., Assistant Member Burroughs Wellcome Fund Helen Horton, Ph.D., Associate Member The Doctor Ralph and Marian Falk Medical Research Trust Stefan Kappe, Ph.D., Associate Member Foundation for Innovative New Diagnostics (FIND) Peter Myler, Ph.D., Full Member Foundation for the National Institutes of Health Marilyn Parsons, Ph.D., Full Member & Director of Science Operations Fred Hutchinson Cancer Research Center David Sherman, Ph.D., Program Director & Full Member Implicit Bioscience Ltd. Joe Smith, Ph.D., Interim Program Director & Associate Member Infectious Disease Research Institute Don Sodora, Ph.D., Associate Member Leo Stamatatos, Ph.D., Program Director & Full Member Imperial College of London M.J. Murdock Charitable Trust Gregg Blodgett Chief Financial Officer Twisted Pair Solutions Jane Hedreen Owner, Flora & Henri Medicines for Malaria Venture Ted White, Ph.D., Program Director & Full Member Alan Levy, Ph.D. CEO, Incline Therapeutics Fogarty International Center Neil McDonnell, Pharm.D. Deputy Director of Strategy Global Health Program Bill & Melinda Gates Foundation The Medtronic Foundation National Center for Research Resources National Heart, Lung, and Blood Institute Jason Carnes, Ph.D. National Institute of Allergy and Infectious Diseases Amy DeRocher, Ph.D. National Institute of Dental and Craniofacial Research Sean Gray, Ph.D. Bryan C. Jensen, Ph.D. National Institute of Diabetes and Digestive and Kidney Diseases Henning Mann, Ph.D. National Institute of General Medical Sciences Sebastian Mikolajczak, Ph.D. National Institute of Neurological Disorders and Stroke Andrew V. Oleinikov, Ph.D. Oregon Health and Science University Brian G. Oliver, Ph.D. PATH Aswini Panigrahi, Ph.D. Paul G. Allen Family Foundation Tige Rustad, Ph.D. Rhode Island Hospital Noah Sather, Ph.D. Science Applications International Corporation George Sellhorn, Ph.D. Silver Family Foundation Angela Talley, M.D., Lead Trials Investigator Special Libraries Association Ashley Vaughan, Ph.D. Stanford University Marissa Vignali, Ph.D. U.S. Army Medical Research and Materiel Command U.S. Department of Health and Human Services - HRSA VISITING SCIENTIST U.S. Environmental Protection Agency Patrick Duffy, M.D. United States-Israel Binational Science Foundation University of Pennsylvania Todd Patrick Chair Community Volunteer Greg Simon, J.D. Senior Vice President, Worldwide Policy, Pfizer Inc. Mike Stull Treasurer Chief Financial Officer, Clarisonic Moya Vazquez Community Volunteer Emeritus Board Melissa Yeager Chief Operating Officer, Cardeas Pharma Tom Blackwell, Director of Information Technology Randy Hassler, Vice President of Operations & Finance Kent Irwin, Director of Facilities Michael Podlin, Vice President of Institutional Advancement Lee Schoentrup, Director of Communications Ken Stuart, Ph.D., President, Director & Founder Jeanine Willis, Director of Human Resources Lynn Zimmerman, Director of Finance BIOQUEST Theresa Britschgi, Director of BioQuest 2010 2010 Kris Richey Vice President, Kinzer Real Estate Services Bonnie Towne Community Volunteer Jilan Liu, M.D., M.H.A. HIV/AIDS 16.5% Investment and Other Income 6.7% Erick Rabins Chief Business Development Officer & Senior VP, Strategic Affairs C3-Jian, Inc. Washington Global Health Alliance Alan Alhadeff Malaria 44.3% Christopher H. Porter, Ph.D. President, Medical Genesis Jean Feagin, Ph.D. MANAGEMENT Government Grants 47.9% Trevor Moody Vice Chair President, TM Strategic Advisors LLC University of Washington Rentala Madhubala, Ph.D. Private Grants & Contracts 44.3% Emerging & Neglected Diseases 26.7% Terrence R. Meersman Vice President, Programs Margaret A. Cargill Foundation AFFILIATE SCIENTISTS Alice Tarun, Ph.D. Tuberculosis 12.5% Marlyn Friedlander Community Volunteer Eunice Kennedy Shriver National Institute of Child Health and Human Development Achim Schnaufer, Ph.D. Budget by Scientific Program Area Contributions 1.1% Maud Daudon Immediate Past Chair President & CEO Seattle-Northwest Securities Corporation Ruobing Wang, M.D., Ph.D., Associate Member SENIOR & STAFF SCIENTISTS Revenue & Support Jane A. Biddle, Ph.D. Technology Transfer Consultant National Institutes of Health Kevin Urdahl, M.D., Ph.D., Assistant Member Fiscal years ending June 30 (dollars in thousands) Rosemary Barker Aragon Executive Director Pacific Hospital Preservation & Development Authority Darryl Johnson Secretary Former US Ambassador to Thailand & Lithuania Ken Stuart, Ph.D., Full Member, President & Director S E L E C T F I N A N C I A L D ATA Statements of Financial Position Cash & investments 2010 2009 $19,037,896 $23,194,705 $432,449 $1,874,506 $7,301,587 Pledges receivable Other assets Statements of Activities 2010 2009 Government grants $23,723,086 $16,182,487 $5,717,821 Private grants $21,915,452 $22,850,761 Support and revenue COUNCIL OF SCIENTIFIC ADVISORS Property and equipment $10,934,896 $10,691,336 Contributions $494,903 $4,209,148 Ben Shapiro, M.D., Chair Director of Research, Retired Merck Research Laboratories Total assets $37,706,828 $41,478,368 Educational program $112,918 $332,914 Rafi Ahmed, Ph.D. Director, Emory Vaccine Center Emory University Accounts payable and accrued expenses $4,593,542 $5,848,727 Investment and other income $3,228,851 $2,560,332 Advances and deferred obligations $9,686,105 $10,036,088 Total support and revenue $49,475,210 $46,135,642 Capital project debt $3,481,384 $4,404,992 Total liabilities $17,761,031 $20,289,807 $43,820,173 $38,687,302 Total net assets $19,945,797 $21,188,561 $933,110 $980,808 $5,153,655 $4,189,915 $811,036 $694,378 Total expenses $50,717,974 $44,552,403 Increase in net assets ($1,242,764) $1,583,239 Margaret Allen, M.D. Katherine M. Lombardo Ellsworth Alvord Jr., M.D. Gary McGlocklin Mark Benjamin, Sc.D. Peter Miller, J.D. J. Paul Blake Susan Morgensztern Carol Bryan Peggy Morrow Vince Bryan Thomas O’Rourke Robert Bunting Judy Pigott Alice Burgess Gloria Pfeif John Creighton, Esq. Thomas Ranken Andrew Dale Chuck Robertson James Davie Gilbert Scherer Nancy Duncan Ezra Teshome Bruce Easter Usha Varanasi, Ph.D. Thomas E. Wellems, M.D., Ph.D. Chief, Malaria Genetics Section NIAID, NIH Janet Lane Eaton Tom Waldron Updated Nov. 15, 2010 Steve Gillis, Ph.D. Rick Weller, M.D., D.T.M.& H. Harris Hoffman Michelle A. Williams, Sc.D. James A. Johnson Mary Williamson John King James Woods, Ph.D. Alvin Kwiram, Ph.D. Jeffrey Wortley Carol Lewis Louis Yaseen Clifton E. Barry, III, Ph.D. Senior Investigator, Chief Tuberculosis Research Section, NIAID, NIH John W. Shiver, Ph.D. Vice President Worldwide Basic Research Franchise Head Vaccines Merck Research Laboratories This is a publication of Seattle BioMed’s Communications Department: Lee Schoentrup, director, and Jennifer Mortensen, specialist. Photo credits: Severine Monnerat, Jennifer Mortensen and Will Winslow. Cover photo: Seattle BioMed scientists Anuradha Kumar, Ph.D., and Meredith Heestand. Expenses Research program Educational program Management and administrative Fundraising Audited statements available upon request. Please email [email protected]. A shared vision is more powerful Providing a pipeline of information around the world, collaboration is one of the keys to scientific discovery. A Washington state-based collaboration — the Seattle Structural Genomics Center for Infectious Disease (SSGCID) led by Seattle BioMed’s Peter Myler, Ph.D. – helped shed new light on the Influenza virus, showing that the recent pandemic-causing H1N1 flu virus used a biochemical “trick” to spread efficiently in humans. The SSGCID uses state-ofthe-art high-throughput technology to experimentally determine the threedimensional structures of proteins from a number of bacterial, viral, fungal and Moei River, Thai-Burma border protozoan pathogens. COLLABORATORS Seattle BioMed’s David Sherman, Ph.D., and his team are playing a critical role in a Stanford University partner-based program in Systems Biology for Infectious Disease Research. Employing the most advanced high-throughput tools and technologies, the project is developing an iterative data-driven mathematical model of TB bacteria responding to stress. Sherman predicts results will provide a new level of understanding of how the disease works in humans. With more than 100 collaborations with leading organizations throughout the U.S. and around the world, Seattle BioMed has powerful partnerships leading to new discoveries in the Former Portuguese settlement “Ilha De Moçambique”, North Mozambique battle against infectious disease. Quilaquila, Bolivia INTERNATIONAL UNITED STATES Astellas Pharma Inc., Japan Biomedical Primate Research Centre, The Netherlands Christian de Duve Institute of Cellular Pathology (ICP),Université Catholique de Louvain (UCL), Belgium Egerton University, Kenya Griffith University, Australia Guy’s Hospital, U.K. Foundation for Innovative New Diagnostics (FIND), Switzerland INOVIO, Norway Institute of Parasitology, Czech Academy of Sciences, Czech Republic Institute of Protein Biochemistry, National Research Council, Italy International Center for Genetics and Biotechnology, India International Centre for Diarrheal Disease Research, Bangladesh Jawaharlal Nehru University, India London School of Hygiene and Tropical Medicine, U.K. McGill University, Canada Morogoro Regional Hospital, Tanzania Nanomics Biosystems Pty Ltd, Australia National Institute of Infectious Diseases, Japan National Institute for Medical Research, Tanzania National Institute of Public Health and the Environment, The Netherlands National Research Council, Canada Norwegian University of Science and Technology (NTNU), Norway Novartis Institute of Tropical Diseases, Singapore Response Biomedical Corporation, Canada Ruhr-Universität Bochum, Germany Sokoine University, Tanzania Pasteur Institute, France TriTryp Genome Consortium Tumaini University, Tanzania Universitätsklinikum Charité Berlin, Germany University of Antioquia, Colombia University of Buea, Cameroon University of Cambridge, U.K. University of Capetown, South Africa University of Copenhagen and Rigshospitalet, Denmark University of Dar es Salaam, Tanzania University of Dundee, Scotland, U.K. University of Edinburgh, Scotland University of Glasgow, Scotland University of Heidelberg, Germany University of Nairobi, Kenya University of Otago, New Zealand Oxford University, U.K. University of Queensland, Australia University of the Ryukyus, Japan University of the Witwatersrand, Johannesburg, South Africa Unversidade Federal de São Paulo, Escola Paulista de Medicina, UNIFESP-EPM, Brazil Vrije Universiteit, The Netherlands Walter and Eliza Hall Institute of Medical Research, Australia Wellcome Trust Sanger Institute, U.K. Aaron Diamond AIDS Research Center Bill & Melinda Gates Foundation Blood Cell Storage, Inc. Boston University Brandeis University Broad Institute Brown University Medical School Buck Institute C3 Jian, Inc., Los Angeles California Institute for Medical Research California Institute of Technology California National Primate Research Center Centers for Disease Control & Prevention (CDC) Columbia University Cornell University Drexel University Duke University Fred Hutchinson Cancer Research Center Haborview Medical Center Harvard University ImmPORT Therapeutics, Inc. Indiana University Infectious Disease Research Institute Institute for Systems Biology Johns Hopkins University La Jolla Institute of Allergy and Immunology Los Alamos National Laboratory Merck Research Laboratories Microsoft Research National Institutes of Health New York University North Carolina State University Northwestern University Novartis Oregon Health & Science University Oregon National Primate Research Center Oregon State University PATH Pacific Northwest National Laboratory Portland Veterans Affairs Medical Center Rosetta/Merck Research Labs Saint Louis University Santa Clara Valley Medical Center Schering Plough Biopharma Scripps Research Institute Seattle Genetics Southwest National Primate Research Center, San Antonio Stanford University TB Control Program, Public Health - Seattle-King County Texas A & M University Tulane National Primate Research Center Tulane University University of California, Berkeley University of California, Davis University of California, Los Angeles University of California, San Francisco University of Chicago University of Illinois, Chicago University of Iowa University of Massachusetts, Worchester University of Michigan University of Missouri University of Nebraska University of North Carolina University of Oklahoma University of Oregon University of Pennsylvania University of Pittsburgh University of Rochester Medical Center University of San Diego University of Texas, San Antonio University of Virginia University of Washington U.S. Environmental Protection Agency Vanderbilt University J. Craig Ventner Institute Walter Reed Army Institute of Research Washington National Primate Research Center Yale University Yerkes National Primate Research Center, Atlanta Thank You for Bringing Our Vision to Life The most influential visionaries are people just like you – citizens of the world who contribute time, money and voices to improve global health. The individuals, foundations and corporations that share our vision of a world free from the threat of infectious disease enable Seattle BioMed to expand innovative research programs, recruit bright scientists and form powerful alliances that advance solutions to malaria, HIV/AIDS, TB and other neglected diseases. Imagine a world where people are healthy. There would be less poverty and fewer orphans. There would be stronger economies and more stable societies. There would be hope. Thank you for helping us turn this vision into reality by supporting the discovery of diagnostics, drugs and vaccines that can ultimately benefit hundreds of millions of people every year. Visit seattlebiomed.org/breakthrough-fund to learn more. Founder’s Circle $250,000+ Bill & Melinda Gates Foundation $50,000+ Dean & Vicki Allen/McKinstry Co. Charitable Foundation Lease Crutcher Lewis Silver Family Foundation $25,000+ Anonymous Byron & Alice Lockwood Foundation $10,000+ The Paul G. Allen Family Foundation Amgen Foundation Anonymous James & Holly Johnson KeyBank National Association Gloria Pfeif Gilbert Scherer & Marlyn Friedlander Charles Spear Charitable Trust Cory Van Arsdale & Melissa Yeager Vulcan Inc. Pacesetters’ Circle $5,000+ Anonymous Maud & Marc Daudon Tom & Joanne Erlandson Firland Foundation David & Amy Fulton Gilead Sciences, Inc. 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