J. Cell Sd. 63, 135-146 (1983) 135 Printed in Great Britain © The Company of Biologists limited 1983 C VALUE AND CELL VOLUME: THEIR SIGNIFICANCE IN THE EVOLUTION AND DEVELOPMENT OF AMPHIBIANS HEATHER A. HORNER AND HERBERT C. MACGREGOR Department of Zoology, University of Leicester, Leicester LEI 7RH, England SUMMARY Cell volume has been determined in 18 species of amphibian, ranging in C value from l-4pg to 62 pg DN A. There is a strong linear relationship between C value and both erythrocyte volume and erythrocyte nuclear volume. We have collected data on the timing of early embryogenesis from fertilization of the egg to the hatching tadpole in some amphibians ranging in C value from 1-4 pg to 83 pg. The species with large genomes take up to 24 times longer to reach a comparable state of development. Polyploid species develop faster than closely related diploid species. These data are discussed in relation to genome expansion and increase in cell cycle time as factors in the evolution of the Amphibia. INTRODUCTION Genes consist of DNA and clearly play a major role in determining most of the characteristics that we can see, measure and define in living organisms. Yet the cells of most eukaryotes contain much more of this hereditary material that is needed to provide for all the structural and regulatory genes that we can presently conceive as essential parts of a complete genetic system. Moreover, as has so often been said in discussions of the so-called C value paradox, there would seem to be no obvious relationship between the amount of DNA in the haploid chromosome set of an organism (its genome size) and the organic complexity of that organism. There are several groups of animals, plants and micro-organisms in which this paradox is particularly striking, but from the standpoint of development and evolution none is so interesting and challenging as the Amphibia. Here we have a group of vertebrates representing all the stages in the exciting and important transition from water to land, animals whose development offers exceptional opportunities for experimental study, and animals that show a range of genome sizes that is quite extraordinary by any standards. In this paper we wish to re-examine the matter of genome size in amphibians and discuss its evolutionary and developmental significance on the premise that even though two animals may have precisely the same repertoire of structural and regulatory genes, it has to make a difference, and a substantial one at that, if one of them has twice as much chromosomal DNA as the other. But in what sense does it make a difference ? We have done three things. First, we have measured the genome sizes and cell sizes in certain species of amphibian, each selected for a particular reason in relation to one 136 H. A. Homer and H. C. Macgregor of the questions covered in this paper. In this study we have used some methods and equipment that were not available to earlier investigators. The use of a scanning and integrating microdensitometer that is capable of making large numbers of accurate and reproducible readings from Feulgen-stained nuclei is probably the best way of determining the DNA content of cell nuclei, and the use of a Coulter Counter and channelizer is probably the most accurate way of determining cell sizes, once again generating highly reproducible data from a very large sample of cells. Second, we have examined the matter of genome size in relation to cell cycle time. Do amphibian cells from a species with a small genome divide more rapidly than a corresponding type of cell from a species with a larger genome? Third, with reference to another carefully selected range of amphibian species, we have determined the time taken to progress from the moment of deposition of a fertile egg to the moment of hatching of a tadpole. Taking these four matters, genome size, cell size, cell cycle time, and time from fertilization to hatching, we shall discuss whether genome size is of selective value and evolutionary significance in so far as it may affect the rate at which an amphibian species accomplishes the early and perhaps the most vulnerable stages of its development. Our choice of species in this study was determined as follows. For our studies of genome and cell size we chose Xenopus tropicalis and X. laevts because they are said to be diploid and tetraploid, respectively (Thiebaud & Fischberg, 1977). Two species olPlethodon were included since they have identical chromosome numbers but widely different genome sizes (Mizuno & Macgregor, 1974). Several species of Triturus were used mainly because we were also able to obtain data on cell cycle and development time in this genus. Three species of Taricha were included because Olmo & Morescalchi (1975) have reported that these animals have widely different nucleus: cytoplasm volume ratios in spite of having almost identical genomes, and we thought the matter worth reinvestigating. The small ambystomid salamander Rhyachotriton olympicus was included since it was available in our laboratory and we knew that it had an unusually large genome: more than 20 times that oiX. laevts and two to three times as large as that of Triturus. For our studies of cell cycle times we had just two cell lines available. The first is a fibroblast culture said to be derived from kidney ofX. laevis. The second is a similar culture derived from skin of Triturus cristatus carnifex. Both these lines have been established in culture for many years and both are quite aneuploid. The chromosome numbers and amount of DNA per nucleus for the Triturus line indicates that it is very nearly equivalent to tetraploid. We have recognized that these cell lines can at best provide us with a rough guide as to the relative rates of division of cells with widely different genomes. Our choice of a study of development time was mainly dictated by the decision to select only species that laid uncleaved eggs in water and then proceeded through a normal developmental sequence inside a jelly capsule, finally hatching as a freeswimming tadpole. We also tried to include in our list as wide as possible a range of genome sizes, some related diploid and polyploid species, and at least some of the C value and cell volume in amphibians 137 species that we had used in other parts of our study. Some of our data in this section are the product of our own studies; others are quoted from work carried out by other investigators. The range of genome sizes in this section is about as wide as can be within the Amphibia, the African bullfrog Pyxicephalus adspersus having one of the smallest genomes of all amphibians andNecturus maculosus having one of the largest. Ceratophrys ornata is an octoploid species (Bario & Rinaldi de Chieri, 1970), and Ambystomajeffersonianum and A. platineum are somatic diploid and triploid, respectively (Uzzell, 1964). MATERIALS AND METHODS Altogether 14 species of amphibian were used in this study. Native British species (Tritunis vulgaris and T. cristatus) were collected locally in Leicestershire in spring 1981. Triturus cristatus camifex was purchased from Xenopus Ltd, (South Nutfield, Redhill, Surrey, England), having been imported from Italy. X. laevis and X. tropicalis were laboratory-bred animals. The X. tropicalis were kindly provided by Dr P. J. Ford of the Department of Molecular Biology, University of Edinburgh. Plethodon and Rhyachotriton were collected and supplied by Dr James Kezer of the University of Oregon. P. adspersus and C. ornata were laboratory-bred and supplied by The Centre for Reptile and Amphibia Propagation (1444 North Roosevelt, Fresno, California 93728). Bombina species were captive-bred and were kindly provided by Mr R. J. Bray. To obtain whole blood either for cell size measurements or for blood smears to be used in Feulgen microdensitometry, the animals were killed or anaesthetized with ethyl m-aminobenzoate (MS222) and blood was taken with a heparinized pipette from the heart, from the tip of the tail or from a vein in the web of a foot. Cell size was determined by measuring displacement of electrolyte volume employing equipment kindly loaned to us by Coulter Electronics Ltd (Northwell Drive, Luton, Bedfordshire, England). Heparinized blood was diluted with calcium-free Ringer and passed through a 100 fim aperture in a Coulter Counter model ZBI. The data were sorted by a C1000 channelizer and plotted on an XY recorder. For each species, commercially calibrated latex spheres with volumes comparable to those of the blood cells being measured were plotted on the same chart. To obtain measurements of nuclear volume whole blood was added to 0-01 M-citric acid plus 0-05 % Nonidet P40. After gentle pipetting, the nuclear suspension was passed twice through a 25 gauge hypodermic needle and examined with a microscope to check that all cytoplasm had been removed. The nuclear suspension was centrifuged for 5 min at 500 g, the supernatant removed, and the nuclei resuspended in calciumfree Ringer. The nuclei were then passed through the Coulter Counter followed by calibrating latex spheres of a known size. Amounts of DNA per diploid cell were obtained by Feulgen microdensitometry of erythrocyte nuclei or tissue-culture cell nuclei. For each species a blood smear was made at one end of a clean microscope slide, it was quickly air-dried and then fixed for 10 min in fresh, ice-cold methanol/ glacial acetic acid (3:1). A 'control' smear was made iromX. laevis blood on the other end of every slide and treated in an identical manner with regard to every step in fixing, staining, and preparation for microdensitometry. Splash preparations were made from fixed tissue-culture cells. Slides were processed through the Feulgen reaction using the method of Swift (1955). Hydrolysis was for 18 min in 5 M-HCI at 18 °C, followed by staining in Schiff's reagent for 90 min and washing in several changes of sulphite rinse. Previous stoichiometry had established the conditions of fixation, hydrolysis and staining that gave the highest and most consistent values for Feulgen dye contents of amphibian erythrocyte nuclei (Mizuno & Macgregor, 1974). The stained smears were air-dried and mounted in immersion oil. Feulgen dye contents were measured on a Vickers M85 Scanning and Integrating Microdensitometer employing light of wavelength 535 nm. Altogether 50 readings were taken from each end of every slide. Two amphibian transformed cells lines with widely different nuclear DNA contents were grown in parallel to compare cell cycle times and growth rates. The Xenopus line is designated as XK and the Triturus line as TCC. Cells were grown at 26°C in Eagle's Minimal Essential medium diluted with water (4:1) and supplemented with 8% foetal calf serum and 4 % lactalbumin hydrolysate 138 H. A. Homer and H. C. Macgregor (AMEM). Samples containing known numbers of cells were dispensed into 5 ml AMEM in 25 cm2 culture flasks. Cells were harvested at 24 h intervals with 0-05% trypsin in calcium-free Ringer and counted in a haemocytometer. Three samples were counted from each flask, and three flasks of each cell line were harvested each day. RESULTS The channelizer of the Coulter Counter sorted cells into 100 different size classes and plotted the data on an XY recorder. Cell volume was plotted linearly along the abscissa and the number of cells was recorded on the ordinate. The channelizer stopped automatically when 1000 cells had been measured in any one channel. The total number of cells counted was in the range 2200 to 3200. Of these, 60-80 % were under the peak defined by 15-20 channels each containing more than 50 measurements. The absolute volumes for cells or nuclei from each species were determined by reference to the peak produced by the calibration spheres. Cell and nuclear volumes for each of the 12 species measured, as well as for Xenopus and Triturus tissue-culture cells are shown in Table 1. A plot of these values (not including data from the tissue-culture cells) against nuclear DNA amounts is shown in Fig. 1. In the present study, the ratio of cytoplasm to nucleoplasm in the Taricha species is the same, and not widely different as reported by Olmo & Morescalchi (1975). Table 1. Volumes of whole erythrocytes and isolated erythrocyte nucleifrom six species of anuran, 12 species of urodele, and two transformed amphibian cell lines, as measured with a Coulter Counter C value (Pg) Cell volume Nuclear volume P. adspersus (PA)» X. tropicalis (XT) X. laevis (XL) Bombina orientalis (BO) B. variegata (BV) C. ornata (CO) 1-4 1-5 3 5-9 6-9 13-4 120 122 250 750 650 450 _ 3 10 50 60 S3 _ 119 240 700 590 397 Plethodon cinereus (PC) Triturus alpestris (TA) Triturus cristatus carmfex (TC) Triturus cristatus cristatus (TC) Triturus marmoratus (TM) Triturus vulgaris (TV) Notophthatmus viridescens (NV) Taricha granules a (TG) Taricha torosa (TT) Taricha rivularis (TR) Plethodon dutmi (PD) R. otympicus (RO) 22-5 24 24-5 24-5 24-9 25 38 35 38-6 38-9 47-5 62 1476 1350 1500 1615 1674 1663 2204 2090 2232 2520 3204 3714 144 190 210 176 208 176 168 272 240 232 304 488 1332 1160 1490 1439 1466 1487 2036 1818 1998 2312 2900 3226 XK cell cultures TCC cell cultures 2-2 41 1926 9139 1-8 323 1924 8816 Species • Abbreviations in parentheses are used in Fig. 1. Cytoplasmic volume (^m3) 139 C value and cell volume in amphibians ..# 3000 2000 E 1000. PAXLBOB^0 CO AT Fig. 1. Regression plot of cell volumes and nuclear volumes (/an3) as measured with a Coulter Counter, against C value (pg) measured by Feulgen microdensitometry. Control X. laevis, 3 0 pg. From the data in Table 1. P = > 0 0 0 1 . See Table 1 for abbreviations of species. Table 2. Parallel growth of cell cultures with widely different amounts of DNAper nucleus: XK = 4-4pg, TCC = 82pg XK cells per cm 2 Day TCC cells per cm2 i 0 2 3 4 5 6 7 8 9 10 11 12 r Mean S.E. (%) Log mean Mean S.E. (%) Log mean 256600 244400 323 200 458800 636600 818000 993 300 1418 300 1747700 2327700 2397 700 3 233 300 11-6 5-456 5-388 5-509 5-662 5-804 5-913 5-997 6152 6-242 6-367 6-380 6-510 165 000 67700 137500 184300 233 300 286600 317500 406500 513 300 462200 528800 441600 15-7 1-2 3-4 2-6 2-7 2-7 60 5-0 2-9 6-4 40-7 0-2 5-217 4-881 5-138 5-266 5-368 5-457 5-502 5-609 5-710 5-665 5-723 5-645 0-4 3-6 18-8 3-7 4-5 1-9 11-2 8-0 14-5 6-5 0-4 140 H. A. Homer and H. C. Macgregor Amounts of nuclear DNA per cell are also given in Table 1. These were obtained by measuring 50 nuclei from the species in question and then taking 50 readings from X. laevis erythrocytes on the same slide. Values in absorption units were converted to picograms on the basis of a diploid nuclear DNA amount for A', laevis of 6-0 pg (Dawid, 1965). For construction of growth curves for tissue-culture cells of both A*, laevis and T. c. camifex the number of cells per cm2 was calculated for each of the nine samples that 6-6- 6-4- 6-2 - c 8 4> "5 E 15-6 CD CD O 5-4- 5-2 - 50- 4-8 2 4 6 Time (days) 8 10 12 Fig. 2. Parallel growth of cell cultures with widely different amounts of DNA per nucleus: (•) XK = 4-4pg; (•) TCC = 82pg. Regression plot from the data in Table 2. P = >0-001. 8484(3C)(b) A. platineum 18 18 ("C) Temperature 7 5 24 20 31 80 87 96 103 Blastula Gastrula Neural fold Tail bud Hatching (N&F, st8) (N&F, s t l l ) (N&F, st17) (N&F, st30) (N&F, st40) Time in hours after fertilization. T h e stages (N&F, st8 etc.) refer to Nieuwkoop & Faber (1967). + C values measured by us, except: (a) Olmo & Morescalchi, 1978; (b) Brodie & Tumbarello, 1978. 13'4(1Cl-@) 5656(2C)(b) 35 83 (a) 5.3 (a) 10.5 (a) 6.9 24.5 28 (b) ? 3.0 1.4 C value* (~g) B. C. ornata A. jeffenonianum A. jeffenonianum T. c. cantifex Rana syloatica R. plplP;ens B. variegata x.t m i Species Table 3. Early development of a selected range of amphibian species E- 0 J. Brothers (as above) Brodie & Tumbarello (1978) Brodie & Tumbarello (1978) Personal observation Brodie & Tumbarello (1978) Rugh (1948) Noble (1931) 4 ' 3 1 s. 2 ? -C Univ. of California, Berkley (Personal Q communication) Nieuwkmp & Faber (1967) Rugh (1948) n % Rugh (1948) Personal observation $ J. Brothers, Zoology Dept, References for embryological data 142 H. A. Homer and H. C. Macgregor were taken every 24 h. The logarithms of the mean cell densities were then plotted against time (Fig. 2). The data from which these curves were constructed are given in Table 2. After an initial lag phase, the cells went into exponential growth, represented in Fig. 2 by straight lines. After the ninth or tenth day the line deviated, as growth slowed on account of contact inhibition and starvation. The doubling time for X. laevis cells was 2\ days as compared with 3i days for T. c. carnifex. Our information on the times taken for embryos of various species of amphibian to reach blastula, gastrula, neurula, tailbud, and hatching stages are given in Table 3. In so far as we shall wish to attach significance to the relationship between genome size and developmental rate, we have included in Table 3A only those species that are known to be normal diploids. In Table 3B we have presented separately the comparative data for C. ornata; an octaploid species, and for triploid Ambystoma platineum. We are aware that the laboratory temperatures used may not be the optimum for each species. However, in general, species with low C values reach any of the defined developmental stages faster than those with higher C values. The polyploid species for which we were able to obtain data develop faster, particularly in the earlier stages, than do their diploid relatives (A. platineum compared with A. jeffersonianum, according to Brodie & Tumbarello, 1978), or other species that have comparable nuclear DNA contents (C. ornata compared with B. variegata). DISCUSSION In this paper we have presented a number of sets of data and we have pointed out certain situations that seem to be good correlations. In the first place, the larger the genome the larger the cell and the longer the cell cycle time. Cell size and cycle time are likely to be of importance, particularly in relation to development and generation time as well as in other processes such as gamete production and wound healing. In our view, the primary changeable element in this matter is most likely to be the genome itself, and the tendency will be for it to grow, unless checked by positive selective pressure to keep it small or at a level that is acceptable for the species. Most of the mechanisms for quantitative changes in DNA that are currently known, including gene duplication, insertion and transposition of sequences and unequal sister chromatid exchange, will, if left unchecked, lead to an accumulation of new DNA sequences and expansion of the genome. In turn this will produce larger cells and longer cell cycles. If then it is selectively advantageous for an organism to possess an average cell cycle of a particular duration, producing after a definitive number of cell divisions an adult body of a particular size, then natural selection must discriminate against excessively high levels of the kinds of events that lead to genome expansion. In essence, genomes will continue to expand unless there are positive selective pressures that keep them in check. Within this general concept there is room for some fine-tuning that does not necessarily involve constraints on genome size. If, for example, the duration of 5-phase in mitosis is taken as one of the major limiting factors in the cell cycle, then natural selection may discriminate in favour of a reduced cell cycle time by allowing C value and cell volume in amphibians 143 Table 4. Replicon spacings in synthesizing cultured cells Species X. laevis T. cristatus Gallus domesticus Cricetulus griseus Homo sapiens (HeLa) C value (pg) Replicon spacings 3 24-5 1-4 57-5 (mean) 100-350 63 (mean) SO (mean) 30 (mean) 3-5 From Callan (1972); MacFarlane & Callan (1973). an increase in the number of initiation points for chromosome replication, effectively decreasing the distances between these points. That there is scope for this kind of adjustment is evident from the studies of Callan (1972) and McFarlane & Callan (1973) and others cited by Callan (1972), who have found quite wide differences in replicon spacings from one species to another that bear little relationship to genome size (Table 4). Callan (1972) also found wide differences in the duration of synthesis between somatic and embryonic cells, the 5-phase in somatic cells being up to 50 times longer than in embryonic cells. Since the replication rate, that is, the speed at which replication proceeds outwards from an initiation point, is constant for a given temperature, the variable factor must be the number of initiation points available for polymerase attachment. Yet another means of reducing cell cycle time without changing genome size is to become polyploid. This principle has been amply demonstrated in plants (Bennett, 1971, 1972, 1977; Bennett, Smith & Lewis, 1982) and it seems to hold also at least for the two polyploid amphibians that we have considered in this paper. On the other hand, stable polyploidy is a relatively rare occurrence amongst bisexual animals, and we are inclined to think of it as having a rather limited adaptive significance. It seems more likely that in species such as A. jeffersonianum polyploidy became established, accompanied by a gynogenetic mode of reproduction, and proved to be selectively neutral. The polyploids have larger cells, they develop into slightly larger adults than their diploid relatives, they occupy the same general habitat as the diploids, and whatever they gain in terms of accelerated embryonic development they lose again in the sense that their period of larval development is longer than that of the diploids (Brodie & Tumbarello, 1978). Our observations on Xenopus and Triturus tissueculture cell lines are of some interest in relation to the effect of polyploidy. The Xenopus line is clearly aneuploid but has a mean chromosome number and nuclear DNA content that are near to the normal diploid values. The Triturus line, on the other hand, began as diploid, and was recorded as such by Rudak (1976). The derivative with which we have worked is aneuploid, but has almost twice the normal diploid number of chromosomes and an amount of DNA per nucleus that is almost twice that of the C value for T. cristatus. We suggest that the near-polyploid condition of the Triturus line may account for the fact that its cell cycle time is much shorter in 144 H. A. Homer and H. C. Macgregor relation to that of the Xenopus line than would be expected on the basis of the relative nuclear DNA contents of the two lines. The significance of the rather striking correlation between genome size and time to hatching is not at all easy to understand. Previous studies of this kind have considered the whole development time right through to metamorphosis (Goin, Goin & Bachman, 1968). In our view this introduces too many complications and unknowns. A survey of times from hatching to metamorphosis amongst frogs, toads and salamanders will quickly show how highly adaptive this period is and how unrelated it is to genome size. It is for this reason that we chose to concentrate on early embryonic development in a series of animals all of which use the same general, and typically amphibian, reproductive strategy. But even when considering relationships between genome size and development time in these animals, it is exceedingly hard to analyse the kinds of selective forces that must be at work. Some authors have stressed the ecological problems that face amphibians that reproduce in ephemeral waters in short spans of time between dry seasons (e.g., see Goin et al. 1968). Such a concept is undoubtedly applicable in some extreme cases, and it may even apply to a species such as P. adspersus in certain parts of its range, the animal seizing the opportunity to breed in very large numbers in a short wet season in some tropical and sub-tropical regions of Africa. But P. adspersus are also abundant during the wet season in ponds that remain full for much longer than it takes the animal to proceed right through and far beyond metamorphosis, and it co-exists in the same ponds with several other species of frog, including X. laevis, that have considerably larger genomes and correspondingly slower developmental rates. Another example that might usefully be cited is that of a range of temperate species of Rana, Bombina and Bufo, as compared to several species of Triturus. The newts and frogs as often as not inhabit the same ponds and despite major differences in genome size and developmental rate, each is successful according to its own particular strategy of reproduction, a fact that is doubly remarkable in relation to crested newts, which not only develop much more slowly and have long precarious larval lives, but reproduce successfully despite the loss of half their embryos at an early developmental stage (Macgregor & Horner, 1980). In short, ecological arguments as a means of rationalizing differences in genome size and corresponding differences in developmental rate are, except at the extreme limits of the ranges, rather unconvincing. In our view, one of the most interesting and least investigated matters emerging from the kinds of correlations that we have shown in this paper relates to the timing of differentiation in development and the production of an organism of a definitive size that is characteristic of a particular species. The construction of a vertebrate requires that an egg of a particular size goes through a certain number of divisions to produce a population of cells that are at first remarkably similar with regard to cell cycle and appearance. As embryogenesis proceeds, these cells gradually start to differentiate and acquire characteristics that are specific for a given function. The cues for this kind of differentiation are not well understood, but at least one group of investigators has argued that they may be part of a programme of which an important component is the number of divisions that a cell has passed through since the start of C value and cell volume in amphibians 145 Table 5. Sizes of eggs in three species of amphibians Species X. tropicalis X. laevis T. c. carnifex Diameter (mm) Volume (/im3) C value (pg) 0-9 1-4 1-7 (1-6 X 1-8) 0-4 1-4 2-7 1-4 3 24-5 Variation was negligible. a developmental process (Summerbell, Lewis & Wolpert, 1973). We wish to cite just two examples here to illustrate our point and expose just a few questions that future investigators may perhaps wish to try and answer. First, a mature egg of T. cristatus is twice the volume of a mature egg from A", laevis (Table 5). These eggs develop through to hatching without the input of any new material; that is, the dry mass of the fertilized egg is the same as that of the newly hatched tadpole. Triturus has eight times as much nuclear DNA as Xenopus, and although the cells of its emerging tadpole may not actually be eight times the volume of the corresponding cells in Xenopus, those that have differentiated fully are likely to have reached the normal adult size and others must be substantially larger than their Xenopus counterparts, if only to accommodate the larger mitotic spindles that are needed to move the big Triturus chromosomes. So the Triturus tadpole may be expected to have a quarter of the number of cells that are in the Xenopus tadpole, and it follows that in the formation of the Triturus tadpole there must have been fewer divisions than in the formation of the Xenopus one. The same may be said in principle with regard t o X laevis andX tropicalis (see Table 5). The cues for cell differentiation must therefore be tuned appropriately. Our second example comes from the genus Plethodon, a group of lungless salamanders that are totally terrestrial and have no free-swimming tadpole stage in their life cycle. Large fertile eggs are laid in the ground and these develop through an encapsulated larval phase and metamorphosis, and emerge as fully formed miniature salamanders. Two species, P. dnereus and P. vehiculum, are remarkably alike except insofar as P. vehiculum has a genome that is nearly twice as large as that off. dnereus (Mizuno & Macgregor, 1974); but they have the same chromosome number, the same egg size, and approximately the same adult body size. Our response to this particular situation is to propose that the Plethodon genome has shown a normal tendency to expand, and in the Western representatives of the genus the process has remained unchecked, reaching the present high level of 69-3 pg in P. vandykei (Mizuno & Macgregor, 1974). In Eastern species such as P. dnereus there has been quite strong selective pressure to maintain the plethodontid genome at around 20 pg. 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