BIOLOGY 6 ENZYME LAB NAME _____________________________ At any given moment, all of the work being done inside any cell is being done by enzymes. If you understand enzymes, you understand cells. A bacterium like E. coli has about 1,000 different types of enzymes floating around in the cytoplasm at any given time. A living system controls its activity through enzymes. An enzyme is a protein molecule that is a biological catalyst with three characteristics. First, the basic function of an enzyme is to increase the rate of a reaction. Most cellular reactions occur about a million times faster in the presence of an enzyme. Second, most enzymes act specifically with only one reactant (called a substrate) to produce products. The third and most remarkable characteristic is that enzymes are regulated from a state of low activity to high activity and vice versa. Gradually, you will appreciate that the individuality of a living cell is due in large part to the unique set of some 3,000 enzymes that it is genetically programmed to produce. If even one enzyme is missing or defective, the results can be disastrous. Enzyme activity can be affected by other molecules. Inhibitors are molecules that decrease enzyme activity; activators are molecules that increase activity. Many drugs and poisons are enzyme inhibitors. Activity is also affected by temperature, pressure, chemical environment (e.g., pH), and the concentration of substrate. Some enzymes are used commercially, for example, in the synthesis of antibiotics. In addition, some household products use enzymes to speed up biochemical reactions (e.g., enzymes in biological washing powders break down protein or fat stains on clothes; enzymes in meat tenderizers break down proteins into smaller molecules, making the meat easier to chew). Enzymes are made from amino acids, and they are proteins. When an enzyme is formed, it is made by stringing together between 100 and 1,000 amino acids in a very specific and unique order. The chain of amino acids then folds into a unique shape. That shape allows the enzyme to carry out specific chemical reactions -- an enzyme acts as a very efficient catalyst for a specific chemical reaction. The enzyme speeds that reaction up tremendously. For example, the sugar maltose is made from two glucose molecules bonded together. The enzyme maltase is shaped in such a way that it can break the bond and free the two glucose pieces. The only thing maltase can do is break maltose molecules, but it can do that very rapidly and efficiently. Other types of enzymes can put atoms and molecules together. Breaking molecules apart and putting molecules together is what enzymes do, and there is a specific enzyme for each chemical reaction needed to make the cell work properly. Maltose is made of two glucose molecules bonded together (1). The maltase enzyme is a protein that is perfectly shaped to accept a maltose molecule and break the bond (2). The two glucose molecules are released (3). A single maltase enzyme can break in excess of 1,000 maltose bonds per second, and will only accept maltose molecules. You can see in the diagram above the basic action of an enzyme. A maltose molecule floats near and is captured at a specific site on the maltase enzyme. The active site on the enzyme breaks the bond, and then the two glucose molecules float away. You may have heard of people who are lactose intolerant, or you may suffer from this problem yourself. The problem arises because the sugar in milk -- lactose -- does not get broken into its glucose components. Therefore, it cannot be digested. The intestinal cells of lactose-intolerant people do not produce lactase, the enzyme needed to break down lactose. This problem shows how the lack of just one enzyme in the human body can lead to problems. A person who is lactose intolerant can swallow a drop of lactase prior to drinking milk and the problem is solved. Many enzyme deficiencies are not nearly so easy to fix. Inside a bacterium there are about 1,000 types of enzymes (lactase being one of them). All of the enzymes float freely in the cytoplasm waiting for the chemical they recognize to float by. There are hundreds or millions of copies of each different type of enzyme, depending on how important a reaction is to a cell and how often the reaction is needed. These enzymes do everything from breaking glucose down for energy to building cell walls, constructing new enzymes and allowing the cell to reproduce. Enzymes do all of the work inside cells. Lab Activity Activity 1: Observation of catalase activity on hydrogen peroxide (H2O2) Direction: Place 1 mL of hydrogen peroxide into a clean plastic weighing tray and add 0.5 mL of catalase to it. Record what you observe. Activity 2: Observation of hydrogen peroxide on potato slice AND banana. Direction: Add 1 mL of hydrogen peroxide onto a slice of potato and banana and describe what you observe. Activity 3: Observation of hydrogen peroxide on skin. Direction: Add 0.5 mL of hydrogen peroxide onto your skin and describe what you observe. If you have a fresh cut, it’s best to put the peroxide on the cut. Activity 4: Effects of Temperature On Catalase Activity Direction: Obtain 5 test tubes and label the tubes according to the table below. Pipet into each tube exactly 4 ml of the catalase solution. Place the tubes in their respective temperature condition for 5 minutes and remove immediately after 5 minutes. Next add 6 ml of hydrogen peroxide to tube number 1 and determine catalase activity by measuring the amount of oxygen that is produce by the enzymatic activity. Repeat with tubes 2 to 5. Tube Temperature (Celsius) 1 0 2 5 3 20 4 40 5 80 Amount of O2 (ml) MEASURING OXYGEN PRODUCTION PROCEDURES: These steps have to be carried out quickly to prevent the oxygen produced from escaping. 1. For tube 1, use a 10mL transfer pipet and pipet pump to draw up 10mL of the mixture. 2. Cover the tip of the 10mL pipet with your finger and remove the pipet pump. 3. Cover the top of the 10mL pipet with a pipet bulb or stopper. 4. Place the filled and sealed 10mL pipet into the labeled test tube and place the tube into a test tube rack. 5. Repeat steps 1-4 for the other tubes. 6. Allow for oxygen to collect in the pipet for 1 hour. Measure gas production as instructed by the professor. Record your results. 7. When you are finished, clean your work area and dispose of the contents of each tube as instructed by the professor. Activity 5: Effects of pH On Catalase Activity Direction: Obtain 5 test tubes and label the tubes according to the table below. Pipet into each tube exactly 4 ml of the catalase solution. Next pipet exactly 1 ml of the pH solutions into the respective tubes and let sit for 5 minutes. After 5 minutes, add 5 ml of hydrogen peroxide to tube number 1 and determine catalase activity by measuring the amount of oxygen that is produced by the enzymatic activity. Repeat with tubes 2 to 5. Follow procedures from Activity 4 to measure oxygen production. Tube pH 1 2 2 4 3 6 4 8 5 10 Amount of O2 (ml) Activity 6: Effects of Temperature on Amylase Activity Direction: Obtain 5 test tubes and label the tubes according to the table below. Pipet into each tube exactly 1 ml of the amylase solution. Place the tubes in their respective temperature condition for 5 minutes and remove immediately after 5 minutes. Next add 2 ml of starch solution to all tubes and let sit for one hour. After one hour, add 1 drop of Lugol’s iodine and mix well. Record the color intensity of the tubes from 0 to 10. Repeat with tubes 2-5. If amylase did not digest starch, the color of the tubes would be bluish black after the addition of Lugol’s iodine. If amylase digested starch, the color of the tubes would be less dark. Tube Temperature (Celsius) 1 0 2 5 3 20 4 40 5 80 % Transmission or Color Intensity (0-10) Activity 7: Effects of pH on Amylase Activity Direction: Obtain 5 test tubes and label the tubes according to the table below. Pipet into each tube exactly 1 ml of the amylase solution. Add 0.5 ml of the respective pH solutions to each of tube and let sit for 5 minutes. After 5 minutes, add 2 ml of starch solution to all tubes and let sit for one hour. After one hour, add 1 drop of Lugol’s iodine and mix well. Record the color intensity of the tubes from 0 to 10. Repeat with tubes 2-4. If amylase did not digest starch, the color of the tubes would be bluish black after the addition of Lugol’s iodine. If amylase digested starch, the color of the tubes would be less dark. Tube pH 1 2 2 4 3 6 4 8 5 10 % Transmission or Color Intensity (010) Questions _____1. An enzyme is what type of biological molecule? a. Protein b. Carbohydrate c. Lipid d. Starch _____2. Amlyase is an example of a(n) a. Carbohydrate b. Simple sugar c. Enzyme d. Indicator _____3. The substrate upon which catalase acts is a. Starch b. Liver c. Water d. Hydrogen Peroxide _____4. The enzyme that breaks down hydrogen peroxide and is present in all cells is a. Amylase b. Catalase c. Pepsin d. Water _____5. In the Enzyme lab, which of the following occurred? a. Starch and sugar were both detected in the first part. b. Only glucose was detected in the first part. c. Glucose was only detected after the amylase was added. d. The glucose was broken down into starch molecules. _____6. At what pH does catalase enzyme work best? a. Neutral b. Basic c. Acidic d. Complex _____7. Pepsin is an enzyme that occurs in the stomach. Upon which substance does it act? a. Carbohydrate b. Sugar c. Glucose d. Protein _____8. When considering enzyme action vs. surface area, in which of the following would the enzyme be most efficient? a. Whole potato b. Diced potato c. Mashed potato d. French fry _____9. Which of the following temperatures would show a decrease in efficiency in enzyme action? a. 25 degrees Celsius b. 120 degrees Celsius c. – 20 degrees Celsius d. a & b e. b & c _____10. An enzyme works on how many different substrates? a. 1 b. 2 c. 3 d. 4 _______11. Amylase is an enzyme that allows the human body to digest starch. Which of these diagrams best represents part of the structure of amylase? A. B. C. D. _______12. A dog gets many nutrients from its food including amino acids. Which of these can be built _________13. Cells in the stomach produce pepsin, an enzyme, to help digest food. Pepsin works best at a pH of 2. Which of these graphs most likely shows what will happen to the activity of pepsin as the pH of the stomach is increased? A B C D ________14. If the temperature in this experiment were reduced by ten degrees, what would most likely happen to the rate of reaction? A. B. C. D. It would increase. It would decrease. It would remain the same. It would increase, then decrease 15. The table below lists enzymes that function in different locations in the human body, and the normal pH and temperature ranges of these locations. Use your understanding of the structure and function of enzymes to: a) Describe how the activity of pepsin will change after it moves from the stomach to the small intestine b) Describe how changes in pH and temperature affect enzyme activity c) Predict how a fever of 40°C would affect enzyme activity 16. Label the following diagram: happening in each diagram: Describe what is
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