Acceptor Stem
A
Phe: S.cerevisiae.REF
Ala: Thp.tenax
Phe: Ag.quadruplicatum
Phe: Sp.oleracea
Phe: S.cerevisiae
Phe: B.taurus
GCGGAUU
GGGCCGG
GCCAGGA
GUCGGGA
GCGGAUU
GCCGAAA
UA
UA
UA
UA
UA
UA
GCUC
GUCU
GCNC
GCUC
GCUC
GCUC
|
10
AGUUGGG
AGCGGA
AGUUGGU
AGCUGGU
AGUUGGG
AGUUGGG
A
A
A
A
A
A
|
20
T YC Stem
Anticodon Stem
D Stem
GAGC
GGAC
GAGC
GAGC
GAGC
GAGC
G
G
A
A
G
G
CCAGA
CCCGC
GAGGA
GAGGA
CCAGA
UUAGA
|
30
CU(GAA)GA
CU(UGC)GC
CU(GAA)AA
CU(GAA)AA
CU(GAA)GA
CU(GAA)AA
UCUGG
GCGGG
UCCUC
UCCUC
UCUGG
UCUAA
|
40
AGGUC
AGAUC
GUGUC
GUGUC
AGGUC
AGGUC
CUGUG
CCGGG
GGCGG
ACCAG
CUGUG
CCUGG
|
50
UUCGAUC
UUCGAAU
UUCAAUU
UUCAAAU
UUCGAUC
UUCAAUC
CACAG
CCCGG
CCGCC
CUGGU
CACAG
CCGGG
|
60
AAUUCGC
CCGGUCC
UCCCGGC
UCCUGGC
AAUUCGC
UUUCGGC
|
70
ACCA|
A~~~|
ACCA|
ACCA|
A~~~|
ACCA|
|
76
Acceptor Stem
B
D Stem
T YC Stem
Anticodon Stem
Phe: S.cerevisiae.REF
Ala: Thp.tenax
Phe: Ag.quadruplicatum
Phe: Sp.oleracea
Phe: S.cerevisiae
Phe: B.taurus
|
10
|
20
|
30
|
40
|
50
|
60
|
70
A. tRNA alignment of five Type 1 tRNA sequences. The four helices of tRNA are boxed and labeled. Position
numbers refer to the reference sequence (Phe: S.cerevisiae.REF).
B. "Diff" view of the same alignment. Symbols: .: same nucleotide as reference sequence; -: deletion;
~: position not sequenced.
|
76