original article Annals of Oncology 20: 441–448, 2009 doi:10.1093/annonc/mdn651 Published online 8 January 2009 Increased g-tubulin expression and P16INK4A promoter methylation occur together in preinvasive lesions and carcinomas of the breast T. Liu, Y. Niu*, Y. Yu, Y. Liu & F. Zhang Breast Cancer Research Key Laboratory of National Education Ministry, Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China Received 31 July 2008; accepted 1 September 2008 abnormalities in variant human mammary epithelial cells. c-Tubulin is a highly conserved component of centrosome in most animal cells and c-tubulin protein overexpression could lead to centrosome aberration. Materials and methods: A large series of breast premalignant lesions and carcinoma was analyzed. Real-time quantitative PCR and immunohistochemistry were carried out to measure c-tubulin copy numbers and protein expression. MethyLight and immunohistochemistry were carried out to determine p16INK4A methylation and protein expression. Results: c-Tubulin protein expression was concordant with gene amplification; both of them were found to increase with atypical ductal hyperplasia–carcinoma sequence. The median value and positive rate of p16INK4a methylation increased while protein expression displayed a decreasing trend. P16INK4a methylation showed a firm association with c-tubulin gene amplification. Conclusion: c-Tubulin gene amplification and the concomitant protein overexpression present not only in invasive carcinoma but also in a significant fraction of atypical hyperplasia and in situ carcinomas. P16INK4a methylation and c-tubulin gene amplification had a synergistic effect on tumor progression. The synergism might arise as a result of the combined influence that p16INK4a and c-tubulin have on the G1–S cell cycle checkpoints and centrosome. Key words: ADH–carcinoma sequence, immunohistochemistry, p16INK4A, real-time quantitative PCR, c-tubulin introduction Cell cycle checkpoints preserve genome integrity by monitoring the fidelity of DNA replication and segregation. It requires the close cooperation of cell cycle regulatory proteins and cytoskeletal elements to sense spindle integrity. P16INK4A, a negative regulator of G1–S checkpoint of cell cycle, plays a key role in cell cycle progression by binding to cyclin-dependent kinase-4(CDK4) and CDK6 and inhibiting the catalytic activity of the CDK4–CDK6/cyclinD complex required for retinoblastoma protein phosphorylation. Forced expression of p16INK4A protein can induce a G1 arrest, thereby preventing the transcription of cell cycle progression genes. The methylation of p16INK4A gene locus is an effective way of modulating gene expression [1]. P16INK4A protein expression is frequently altered to various degrees in human cancers through promoter methylation [2, 3]. Hannah Müller et al. [4] found that the molecular requirements for a functional spindle checkpoint included *Correspondence to: Prof. Y. Niu, Breast Cancer Research Key Laboratory of National Education Ministry, Cancer Institute and Hospital, Tianjin Medical University, Huan Hu Xi Road, Ti Yuan Bei, He Xi District, Tianjin 300060, China. Tel: +86-22-23340123-5221; Fax: +86-22-23359337; E-mail: [email protected] c-tubulin, and c-tubulin-depleted cells fail to form functional spindles and arrest during nuclear division. c-Tubulin is a kind of cytoskeletal element that exists in a macromolecular complex called the c-tubulin ring complex (c-TuRC). c-TuRC exists in a mass of amorphous electron-dense matrix termed the pericentriolar material (PCM), which is the key element of the centrosome. A centrosome consists of a pair of perpendicularly positioned barrel-shaped centrioles surrounded by PCM. In many studies, c-tubulin was used to localize and quantify centrosomes [5, 6], and c-tubulin protein overexpression could lead to centrosome aberration [7]. Loss of p16INK4A activity due to methylation presented in variant human mammary epithelial cells (vHMECs) and thus resulted in supernumerary centrosomes through centriole pair splitting. Then generation of supernumerary centrosomes was shown to nucleate multipolar spindles and directly drive production of aneuploid daughter cells [8, 9]. c-Tubulin is a highly conserved component of centrosomes in most animal cells and is essential for coordinating mitotic events [10, 11]. Despite the extensive number of studies on the p16INK4A and c-tubulin, we know of no other study, to date, that has analyzed these two centrosome-associated factors in breast cancer ª The Author 2009. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: [email protected] original article Background: Loss of p16INK4A due to promoter hypermethylation is correlated with the ability to acquire centrosomal original article tissues or observed the relationship between these two critical factors. Taken together, we extended our studies to analyze p16INK4A methylation and c-tubulin expression in a large series of normal breast tissue (NBT) and usual ductal hyperplasia (UDH), atypical ductal hyperplasia (ADH), ductal carcinoma in situ (DCIS), and infiltrative ductal carcinoma (IDC) samples of breast. We expect to identify the molecular (causal) changes that underlie progression of normal breast epithelial cells to malignancy and with hopes that such information will provide selective targets for effective treatment of breast cancer. Annals of Oncology manufacturer’s instructions. Quantitative DNA methylation analysis was carried out through MethyLight, as previously described [13, 14]. GeneAmp5700 sequence detector was utilized to quantify p16INK4a methylation. Primers and probes for p16INK4a [15] and b-actin [16] were previously described, and b-actin was employed to normalize the amount of input bisulfite-converted DNA. SssI methylase (New England Biolabs, Peking, China)-treated human genomic DNA was utilized as a fully methylated reference. The amount of methylated DNA (percentage of methylated reference, PMR) [17] at p16INK4a was calculated by dividing the p16INK4a: b-actin ratio of the sample by the p16INK4a: b-actin ratio of SssI-treated human genomic DNA and multiplying by 100. On the basis of the previously validated data [18], the p16INK4a gene was considered methylated if the PMR value was >0. materials and methods tissue specimens Tissue collection and analysis in this study were approved by the Ethical Committee of Tianjin Medical University Tumor Hospital, China. All cases of breast surgical specimens, formalin fixed and paraffin embedded were anonymized after collection from the archival file of Breast Pathology Department, Tianjin Tumor Hospital. Forty cases of NBT/UDH, 40 cases of ADH, 60 cases of DCIS (24 low grade and 36 high grade), and 60 cases of IDC (28 low grade and 32 high grade) were randomly selected from 1998 to 2006. The availability of enough tumor tissue in each case was ensured for effective DNA isolation, excluding immunostaining. The pathologic diagnosis was counterchecked by two senior pathologists according to the 2003 World Health Organization histological classification of breast tumors [12]. DNA isolation Breast tissue samples utilized for real-time quantitative PCR (qPCR) and methylation analysis were prepared by conducting microdissection of tissue sections. Genomic DNA was isolated using an E.Z.N.A. Tissue DNA Kit (Omega Bio-tek, Norcross GA), according to the manufacturer’s instructions. quantitative PCR Specific primers were designed according to the published sequence of c-tubulin gene in National Center for Biotechnology Information database using primer design software programs Oligo 6.72. BLAST analysis was carried out to exclude the influence of pseudogenes. c-Tubulin was amplified using the forward (5#-GCG ATG CCG AGG GAA ATC ATC ACC CT-3#) and reverse (5#-TGG GTG CCC CAG GAG ATG TAG TCT G-3#) primers, which generate a fragment of 135 bp in length. a-Tubulin was used as the external reference gene and was amplified with the following primers: 5#-TAT CGA GCG CCC AAC CTA CAC T-3# and 5#-CCT CAC CCT CTC CTT CAA CAG AAT C-3# with generated fragments of 683 bp in length. A GeneAmp 5700 Sequence Detection System (Applied Biosystems) was used to perform qPCR amplification, PCR amplifications were carried out in a final volume of 20 ll containing 10 ll SYBR premix (TaKaRa Biotechnology Limited Company, Dalian, China), 0.8 ll of each primer, and 80 ng of genomic DNA. Amplification condition was 94C for 5 min then 40 cycles at 94C for 30s, 57C for 20s, and 72C for 20s. Negative controls were carried out by omitting template or primers. Reactions were carried out with different concentrations of one standard plasmid to plot standard curve. Real-time PCR reactions were done in triplicate for each sample, and absolute DNA quantification was calculated using the standard curve method. methylation analysis The DNA was subjected to bisulfite treatment utilizing a Methylamp DNA Modification Kit (Epigentek, Brooklyn, NY) according to the 442 | Liu et al. immunohistochemistry Tissue sections (5 lm) were deparaffinized and hydrated utilizing standard procedures. Immunostaining was carried out using the super-sensitivity S-P immunohistochemistry (IHC) kit. Anti-c-tubulin (Santa Cruz Biotechnology, CA, USA) and anti-p16INK4a’s (Beking Zhongshan Biotechnology Limited Company, China) primary antibody was applied to the sections at a dilution ratio of 1 : 500 and 1 : 40, respectively. Antigen retrieval has been done for anti-p16INK4a antibody. Positive and negative controls were included in every batch. evaluation of g-tubulin staining Positive signals of c-tubulin proteins were located in the cytoplasm (Figure 1A–F). At least 10 power fields were chosen per case and >500 cells were counted for each power field. Scoring system was modified and used according to evaluation standard [19]. The percentage of the staining cells (P) was scored as follows: 0 (staining of <5% of cells), 1 (5%–25% of cells), 2 (25%–50%), 3 (50%–75%), and 4 (75%–100%). Staining intensity (I) was graded as follows: 0 (no staining), 1 (weak staining), 2 (moderate staining), and 3 (intense staining). Samples in each power field were evaluated for both factors, i.e. P multiplied by I. The scoring of each case was a mean value of chosen power fields. Eventually the sections were graded as follows: (2) scoring 0–2, 1+ scoring 2–5, 2+ scoring 5–8, and 3+ scoring >8. evaluation of p16INK4a staining Positive signals of p16INK4a proteins [20, 21] were located in the nuclei (Figure 2A–F). At least 10 fields in each specimen were randomly selected and examined under high-power magnification, and >500 cells were counted to determine the percentage of positive cells. On the basis of the criteria Geradts et al. [22, 23] established, with minor modification, the case wherein the percentage of positive cells was ‡10% was considered as p16INK4a positive. statistical analysis The data analysis was carried out with the SPSS13.0 software package. One-way analysis of variance was used to compare quantitative data in six groups. Tamhane and Games-Howell were used to do multiple comparisons. Cochran–Mantel–Haenszel was used to analyze the correlation. Chi-square tests were employed to analyze categorical data. All P values were two sided, and statistical significance was set at P = 0.05. results IHC analysis of g-tubulin protein In NBT/UDH, the scoring of c-tubulin staining showed a mean value of 1.685 (0–6.4). In ADH, an increase to 3.34 (0–11.4) was observed. These changes were even more obvious Volume 20 | No. 3 | March 2009 Annals of Oncology original article Figure 1. The expression of c-tubulin protein in the various lesions of the breast. (A) Negative expression of c-tubulin protein in normal breast tissue/usual ductal hyperplasia (IHC-SP method ·100); (B) positive expression of c-tubulin protein observed as brown–yellow color in the cytoplasm in atypical ductal hyperplasia (IHC-SP method ·100); (C) positive expression of c-tubulin protein observed as brown–yellow color in the cytoplasm in low-grade DCIS (IHCSP method ·100); (D) positive expression of c-tubulin protein observed as brown–yellow color in the cytoplasm in high-grade ductal carcinoma in situ (IHC-SP method ·100); (E) positive expression of c-tubulin protein observed as brown–yellow color in the cytoplasm in low-grade infiltrative ductal carcinoma (IDC) (IHC-SP method ·100); (F) positive expression of c-tubulin protein observed as brown–yellow color in the cytoplasm in high-grade IDC (IHC-SP method ·200). in low-grade ductal carcinoma in situ (LDCIS) and highgrade ductal carcinoma in situ (HDCIS), with a mean value of 3.917 (0.2–12) and 4.594 (0.4–12), and low-grade infiltrative ductal carcinoma (LIDC) and high-grade infiltrative ductal carcinoma (HIDC), with a mean value of 5.036 (0.4–12) and 6.613 (1.2–12) (Figure 3). Statistical analysis of the scoring of c-tubulin staining revealed a significant differences among six groups (P = 0.000). Compared with NBT/UDH, the other groups showed statistical significance (P < 0.05). Besides, a significant alteration occurred between (i) ADH and HIDC and (ii) LDCIS and HIDC. Also the positive rate of c-tubulin staining increased with the NBT/UDH to ADH to DCIS to IDC sequence, and this increase showed statistical significance (v2 = 25.381, P = 0.000) (summarized in Table 1). Volume 20 | No. 3 | March 2009 DNA copy numbers for g-tubulin The measurement of DNA copy numbers in the six groups were shown in Table 2. The mean value of DNA copy numbers increased 1.64 times from NBT/UDH to ADH, 2.63 times from NBT/UDH to LDCIS, 2.95 times from NBT/UDH to HDCIS, 3.88 times from NBT/UDH to LIDC, and 4.93 times from NBT/UDH to HIDC, and this increase was significant (F = 34.596, P = 0.000). By multiple comparisons, there were significant differences between (i) NBT/UDH and any other groups, (ii) ADH and HDCIS, (iii) ADH and LIDC, (iv) ADH and HIDC, (v) LDCIS and HIDC, and (vi) HDCIS and HIDC. Most interestingly, different histological grade within DCIS and IDC did not show statistical significances (P = 0.944 for LDCIS and HDCIS, P = 0.063 for LIDC and HIDC). If the mean value of DNA copy number in NBT/UDH was used as cut-off value, the percentage of cases with increased doi:10.1093/annonc/mdn651 | 443 original article Annals of Oncology Figure 2. The expression of p16INK4a protein in the various lesions of the breast. (A) Positive expression of p16INK4a protein observed as brown–yellow color in the nucleus in normal breast tissue/usual ductal hyperplasia (IHC-SP method ·100), (B) positive expression of p16INK4a protein observed as brown– yellow color in the nucleus in atypical ductal hyperplasia (IHC-SP method ·200); (C) positive expression of p16INK4a protein observed as brown–yellow color in the nucleus in low-grade ductal carcinoma in situ (DCIS) (IHC-SP method ·100); (D) positive expression of p16INK4a protein observed as brown– yellow color in the nucleus in high-grade DCIS (IHC-SP method ·100); (E) positive expression of p16INK4a protein observed as brown–yellow color in the nucleus in low-grade infiltrative ductal carcinoma (IDC) (IHC-SP method ·100); (F) negative expression of p16INK4a protein observed as brown–yellow color in the nucleus in high-grade IDC (IHC-SP method ·100). DNA copy numbers (c-tubulin gene amplification rate) was 30.0% in NBT/UDH. A sharp elevation to 55.0% was found in ADH, with continuous increase to 62.5% in LDCIS, 72.2% in HDCIS, 78.6% in LIDC, and 84.4% in HIDC (Figure 4). Similar to DNA copy numbers, c-tubulin gene amplification rate showed differences among six groups (v2 = 29.880, P = 0.000). Moreover, c-tubulin gene amplification rate was positively correlated with the positive rate of protein expression with the NBT/UDH to ADH to DCIS to IDC sequence (r = 0.377, P = 0.000) (Figure 5). Similarly, c-tubulin DNA copy numbers were positively correlated with the scoring of c-tubulin staining (Figure 6). (Figure 7). It increased with the NBT/UDH to ADH to DCIS to IDC sequence. There were significant differences among six groups (F = 40.189, P = 0.000). By multiple comparisons, statistical difference was found (i) between NBT/UDH and any other groups, (ii) between ADH and HDCIS, LIDC, and HIDC, (iii) between LDCIS and HDCIS, LIDC, and HIDC, and (iv) between HDCIS and HIDC. A total of 3 (7.5%) of 40 UDH, 14 (35%) of 40 ADH, 12 (50%) of 24 LDCIS, 24 (66.7%) of 36 HDCIS, 20 (71.4%) of 28 LIDC, and 24 (75%) of 32 HIDC were deemed methylated by MethyLight, with significant differences found among six groups (v2 = 49.507, P = 0.000). MethyLight The median PMR value showed 0.20 (0–4) in NBT/UDH, 5.48 (0–20) in ADH, 15.21 (0–36) in LDCIS, 32.83 (0–67) in HDCIS, 44.61 (0–79) in LIDC, and 65.59 (0–98) in HIDC IHC analysis of p16INK4a protein P16INK4a protein expression was detected in the samples of 32 NBT/UDH, 19 ADH, 8 LDCIS, 11 HDCIS, 7 LIDC, and 6 HIDC, all of which were devoid of p16INK4a methylation 444 | Liu et al. Volume 20 | No. 3 | March 2009 original article Annals of Oncology Figure 3. Summary of the numerical changes of c-tubulin staining along the atypical ductal hyperplasia (ADH)–carcinoma sequence of breast carcinoma. Box plots depict the score of c-tubulin staining for normal epithelial cells, ADH, low- and high-grade ductal carcinoma in situ and invasive carcinoma. Each individual sample is indicated by a dot, minimum and maximum data points are indicated (bar, linked to the box by a line), and one statistical ‘outsider’ (ADH) is shown by the closed circle. Figure 4. c-Tubulin gene amplification rate in six groups. Table 1. The positive rate of c-tubulin staining in six groups Group Cases c-tubulin 2 + Staining ++ +++ Positive rate (%) NBT/UDH ADH LDCIS HDCIS LIDC HIDC Total 40 40 24 36 28 32 200 26 17 9 10 7 4 73 1 7 6 10 9 15 48 35.0 57.5 62.5 72.2 75.0 87.5 63.5 13 14 8 12 9 5 61 0 2 1 4 3 8 18 Figure 5. The positive correlation of c-tubulin gene amplification rate and c-tubulin protein-positive rate. NBT/UDH, normal breast tissue/usual ductal hyperplasia; ADH, atypical ductal hyperplasia; LDCIS, low-grade ductal carcinoma in situ; HDCIS, high-grade ductal carcinoma in situ; LIDC, low-grade infiltrative ductal carcinoma; HIDC, high-grade infiltrative ductal carcinoma. Table 2. Summary of c-tubulin DNA copy numbers within the ADH–carcinoma sequence Group Mean values of DNA copy number (·106/ng) Range of DNA copy number (·106/ng) Significance (P) (relative to normal) NBT/UDH ADH LDCIS HDCIS LIDC HIDC 1.84 3.01 4.84 5.43 7.13 9.07 1.78–2.26 1.80–7.90 1.80–9.62 1.80–10.24 1.82–14.72 1.83–14.89 0.000 0.000 0.000 0.000 0.000 NBT/UDH, normal breast tissue/usual ductal hyperplasia; ADH, atypical ductal hyperplasia; LDCIS, low-grade ductal carcinoma in situ; HDCIS, high-grade ductal carcinoma in situ; LIDC, low-grade infiltrative ductal carcinoma; HIDC, high-grade infiltrative ductal carcinoma. Volume 20 | No. 3 | March 2009 Figure 6. The positive correlation of c-tubulin DNA copy numbers (·106/ng) and score of c-tubulin protein expression. (Table 3). Otherwise, from NBT/UDH to ADH to DCIS and to IDC, the positive expression of p16INK4a displayed a decline (v2 = 37.412, P = 0.000). By multiple comparison, there were significant differences between (i) NBT/UDH and ADH doi:10.1093/annonc/mdn651 | 445 original article Annals of Oncology Figure 7. The median and range of percentage of methylated reference value of p16INK4a methylation in six groups. Figure 8. The negative correlation of p16INK4a protein expression and p16INK4a methylation within six groups. Table 3. The positive rate of p16INK4a protein expression in six groups Group Cases P16INK4a protein expression + 2 Positive rate (%) NBT/UDH ADH LDCIS HDCIS LIDC HIDC Total 40 40 24 36 28 32 200 32 19 8 11 7 6 83 80 47.5 33.3 30.6 25.0 18.8 41.5 8 21 16 25 21 26 117 NBT/UDH, normal breast tissue/usual ductal hyperplasia; ADH, atypical ductal hyperplasia; LDCIS, low-grade ductal carcinoma in situ; HDCIS, high-grade ductal carcinoma in situ; LIDC, low-grade infiltrative ductal carcinoma; HIDC, high-grade infiltrative ductal carcinoma. (v2 = 9.141, P = 0.002), (ii) NBT/UDH and LDCIS (v2 = 13.938, P = 0.000), (iii) NBT/UDH and HDCIS (v2 = 18.855, P = 0.000), (4) NBT/UDH and LIDC (v2 = 20.370, P = 0.000), and (v) NBT/UDH and HIDC (v2 = 26.760, P = 0.000). The positive rate of p16INK4a protein expression was negatively correlated with that of p16INK4a methylation within six groups (r = 0.178, P = 0.12) (Figure 8). correlation between c-tubulin and p16INK4a P16INK4a methylation is positively related to c-tubulin gene amplification by Cochran–Mantel–Haenszel statistical analysis (v2 = 15.722, P = 0.000) (Figure 9). Two (5%) NBT/UDH, 10 (25%) ADH, 9 (37.5%) LDCIS, 20 (55.6%) HDCIS, 18 (64.3%) LIDC, and 22 (68.7%) HIDC simultaneously showed p16INK4a methylation and c-tubulin gene amplification, while 27 (67.5%) NBT/UDH, 14 (35%) ADH, six (25%) LDCIS, six (16.7%) HDCIS, four (14.3%) LIDC, and three (9.4%) HIDC showed neither of them. One (2.5%) NBT/UDH, four (10%) ADH, three (12.5%) LDCIS, four (11.1%) HDCIS, two (7.1%) LIDC, and two (6.3%) HIDC showed p16INK4a 446 | Liu et al. Figure 9. The correlation of p16INK4a methylation presentation and c-tubulin gene amplification in six groups. methylation, without c-tubulin gene amplification. Ten (25%) NBT/UDH, 12 (30%) ADH, six (25%) LDCIS, six (16.6%) HDCIS, four (14.3%) LIDC, and five (15.6%) HIDC showed c-tubulin gene amplification, without p16INK4a methylation. In contrast, p16INK4a protein expression is negatively related to c-tubulin protein expression (v2 = 7.447, P = 0.006) (Table 4). discussion In this study, the median PMR value and positive rate of p16INK4a methylation increased from NBT/UDH, to ADH, to DCIS, to IDC, with both displaying significant differences. Correspondingly, p16INK4a protein expression displayed a decreasing trend, being consistent with methylation presentation. Compared with NBT/UDH, ADH, DCIS, and IDC showed significant differences in p16INK4A protein expression and p16INK4A methylation. Results of this study support the argument that the loss of p16INK4A protein Volume 20 | No. 3 | March 2009 original article Annals of Oncology Table 4. Association of c-tubulin protein expression with p16INK4a protein expression in six groups p16INK4a protein expression + 2 c-tubulin NBT/UDH + 2 ADH + 10 4 17 6 22 4 2 Protein LDCIS + 2 15 7 8 2 HDCIS + 1 8 9 17 2 Expression LIDC + 2 HIDC + 2 2 8 6 15 5 23 1 3 1 6 NBT/UDH, normal breast tissue/usual ductal hyperplasia; ADH, atypical ductal hyperplasia; LDCIS, low-grade ductal carcinoma in situ; HDCIS, high-grade ductal carcinoma in situ; LIDC, low-grade infiltrative ductal carcinoma; HIDC, high-grade infiltrative ductal carcinoma. expression due to methylation played an important role in the evolution of breast cancer and might contribute to the earliest stage of cancer development. c-Tubulin was an essential protein for cell growth and organizes microtubule arrays in the nucleus and cytoplasm. Many studies profiled c-tubulin expression from the point of protein level to assess centrosome abnormality [24, 25], and alteration in the levels of c-tubulin protein could lead to abnormal centrosome [8]. In this study, we determined c-tubulin expression by simultaneously measuring its DNA copy numbers and protein expression. A new method of PCR quantification, real-time qPCR, was carried out because it allows us to actually view the increase in the amount of DNA. Our results showed that c-tubulin protein expression was concordant with DNA copy numbers, both of them were found to increase from NBT/UDH to ADH to DCIS and IDC, with both displaying significant differences. This suggested that c-tubulin gene amplification led to protein overexpression. c-Tubulin gene amplification is present not only in invasive carcinoma but also in a significant fraction of atypical hyperplasia and in situ carcinomas. c-Tubulin gene amplification and subsequent protein overexpression might greatly contribute to the evolution of breast epithelial from normal ductal epithelial to atypical hyperplasia, to in situ carcinoma, and to invasive carcinoma. Tumor grade has been identified as the most powerful prognostic indicator of disease-free survival, with high-grade tumors having poorer prognosis. Centrosome defect occur in in situ carcinoma and invasive carcinoma and correlated with the histological/cytologic grade in literature [8]. Although c-tubulin was considered as the most important component of the centrosome; c-tubulin DNA copy numbers and protein expression did not show differences between different histological grades in our studies. This might be due to that there were other factors influencing centrosome abnormality, such as posttranslational modifications of tubulin [26], changes in proteins involved in cell cycle control, centrosome structure or function, and DNA repair, e.g. mutation or elimination of p53 or p53 downstream effectors/regulators [27]. A significant correlation was found between c-tubulin gene amplification and p16INK4a methylation. With the NBT/UDH to ADH to DCIS to IDC sequence, p16INK4a methylation and c-tubulin gene amplification simultaneously showed an increasing trend. This might suggest that p16INK4a methylation and c-tubulin gene amplification had a synergistic effect on breast tumor progression and simultaneously contributed to the earliest stage of cancer development. However, the Volume 20 | No. 3 | March 2009 mechanism for the synergistic effect is unknown. A functional link may exist between p16 activity and p53 protein levels [28]. P16INK4a gene activity inversely modulates p53 status and function in primary human mammary epithelial cells. Reduced levels of p16 can increase p53 protein level and functions. However, sustained upregulation of p53 activity may also increase the selective pressure to inactivate p53. Loss of p53 might result in deregulation of centrosome duplication and lead to functionally amplified centrosomes [5]. On the other hand, loss of p16INK4a generates supernumerary centrosomes through centriole pair splitting in cultured vHMECs. c-Tubulin localizes to the centrosome and might normally function to accelerate the kinetics of centriole assembly. The synergism between p16INK4a and c-tubulin could be a result of p16INK4a methylation and c-tubulin gene amplification, which influence their ability to carry out their roles in proper maintenance and duplication of the centrosome. Another possible mechanism by which p16INK4a and c-tubulin could have a synergistic effect on tumor progression is through their influence on the G1–S checkpoint. Disruption of the p16-CDK4/cyclin D1-pRB pathway occurs frequently in breast premalignant and cancer [29]. Although c-tubulin is thought to act primarily at the centrosome, in most cells the majority of c-tubulin is in the cytoplasm. Analysis of c-tubulin mutants in fungi suggests that c-tubulin might also have an independent role in cell cycle control. Cells treated with double-stranded RNA for c-tubulin showed a clear increase in the number of mitotic cells in Drosophila cells as opposed to the control cells, supporting the argument that c-tubulin is thought to be required for a G1-related checkpoint pathway and spindle formation [4, 30]. The synergism might therefore arise as a result of the combined influence that p16INK4a and c-tubulin have on the G1–S cell cycle checkpoints. In summary, we have shown that p16INK4a methylation and c-tubulin gene amplification are early events in the ADH–carcinoma sequence of breast carcinoma. The aberration of these two factors might not only contribute to loss of G1 cell cycle checkpoint controls, but also induce normal ductal epithelia to accumulate chromosomal abnormalities and centrosome abnormality and express phenotypes that are critical to malignant progression. funding National Science Fund of China (30471967). It is also supported by Program for Changjing Scholars and Innovative Research Team in University (PCSIRT). doi:10.1093/annonc/mdn651 | 447 original article references 1. Berman H, Zhang J, Crawford YG et al. Genetic and epigenetic changes in mammary epithelial cells identify a subpopulation of cells involved in early carcinogenesis. Cold Spring Harb Symp Quant Biol 2005; 70: 317–327. 2. Dessy E, Rossi E, Berenzi A et al. 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