Laboratory Manual for General Biology I (BSC 1010C) Lake-Sumter State College Science Department Leesburg Table of Contents Note to Students ........................................................................................................................................... 3 Exercise 1 - Measurements and Lab Techniques .......................................................................................... 4 Exercise 2 - Functional Groups, Organic Molecules, Buffers, and Dilutions ............................................... 13 Exercise 3 - Qualitative Analysis of Biological Molecules ........................................................................... 23 Exercise 4 - The Microscope ....................................................................................................................... 31 Exercise 5 - Cell Structure and Membrane Function .................................................................................. 46 Exercise 6 - Enzyme Activity ........................................................................................................................ 56 Exercise 7 - Respiration ............................................................................................................................... 63 Exercise 8 - Photosynthesis ......................................................................................................................... 67 Exercise 9 - Cell Division .............................................................................................................................. 73 Exercise 10 - DNA Fingerprinting ................................................................................................................ 81 Exercise 11 - Genetics ................................................................................................................................. 96 A significant portion of this lab manual is used with the kind permission of the Science Department at Seminole State College, Sanford, Florida. Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 2 Note to Students Students should read and study the exercises before coming to the laboratory and should supply themselves with the necessary materials including the text book, lecture notes, laboratory manual, calculators, pens, and pencils. All students are required to wear appropriate clothing to lab as outlined by the lab instructor as well as follow all safety precautions during laboratory exercises. Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 3 Exercise 1 - Measurements and Lab Techniques Introduction In scientific experiments, observation and accurate measurements are essential. The investigations in this exercise will familiarize you with some of the methodologies and equipment in use in biology laboratories. Your objective is to learn to correctly select and use equipment to obtain accurate results, while avoiding damage to the equipment or yourself. Materials Equipment meter sticks metric rulers blocks of various sizes irregularly shaped objects (fossils, rocks, bones, etc.) 500 ml graduated cylinders triple beam balances Part A: The Metric System Scientific measurements are expressed in the units of the metric system or its modern day successor, the International System of Units (SI). We will use this system exclusively throughout this course. The metric system was invented by the French vicar Gabriel Moutin in 1670 and officially adopted as the standard for weights and measures in France in 1795. Since then it has spread throughout much of the rest of the world. Although the United States traditionally uses the English system, its use has become more common in recent years. You may have even noticed canned goods and drinks in grocery stores are given in metric as well as English units. Just like in the English system, the metric system has three categories of units. For distance, it is meter, for volume, liter, and for mass, gram. The metric system makes use of prefixes to change the value of the unit in multiples of 10 (Table 1.1) Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 4 Exercise 1 – Measurements and Lab Techniques Table 1.1. Metric System Units Exponential multiplier Length Volume Mass 103 kilometer (km) kiloliter (kl) kilogram (kg) 102 hectometer (hm) hectoliter (hl) hectogram (hg) 101 decameter (dam) decaliter (dal) decagram (dag) 100 = 1 meter (m) liter (l) gram (g) -1 10 decimeter (dm) deciliter (dl) decigram (dg) 10-2 centimeter (cm) centiliter (cl) centigram (cg) -3 10 millimeter (mm) milliliter (ml) milligram (mg) 10-4 These units have no prefixes 10-5 10-6 micron (μ) microliter (μl) microgram (μg) -7 10 These units have no prefixes 10-8 10-9 nanometer (nm) nanoliter (nl) nanogram (ng) Use this mnemonic device to remember the order of the prefixes: kids have dropped over dead converting many blank blank metric blank blank numbers Conversion between related units is accomplished by moving the decimal point the appropriate number of places left or right (Fig. 1.1). Fig. 1.1 Metric Unit Conversion Staircase kilo (k) hecto (h) deca (dam) m, l, g deci (d) centi (c) milli (m) micron (μ) nano (n) Move “up” the staircase to larger units, “down” to smaller ones. As example, to convert 37.35 decimeters (dm) to millimeters (mm), move the decimal point 2 places to the right (3735). Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 5 Exercise 1 – Measurements and Lab Techniques Fill in the basic metric unit for each measurement in Table 1.2 Table 1.2 Basic Metric Units Measurement Length Volume Mass Basic Metric Unit Carry out the metric conversions in Table 1.3. Table 1.3 Practice Metric Conversions 550 ml 3.7 g 20 km 78.4 cm 212 μl 67.5 dam 500 μm __________ l __________ mg __________ m __________ mm __________ ml __________ μm __________ mm Part B: Length Measurements Length measurements are made with a metric ruler. When using a linear device, you should extend your answer at least to the finest divisions on the device. For example, if you have a meter stick with markings to the millimeter, you could measure your height to the nearest millimeter (e.g., 1754 millimeters or 1.754 meters). The size of objects falling between marked divisions may be interpolated. Interpolation is an estimation how the distance an object extends between the smallest marks on the device. Part B1: Metric Height Procedure 1. Obtain a meter stick 2. Find a partner and stand them with their back against a wall or door frame 3. Make a small mark at the level of the top of their head 4. Measure this height in centimeters making the most accurate measurement you can with the meter stick 5. Repeat the procedure with yourself and record your height here __________ cm Part B2: Calculating Surface Area to Volume Ratios (SA : Vol) w h l Procedure 1. Use the dimensions given in table 1.4 for various block sizes, calculate total surface area and volume and enter in Tables 1.5 and 1.6 Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 6 Exercise 1 – Measurements and Lab Techniques Table 1.4 Block Dimensions l (cm) w (cm) h (cm) Small Medium Large Calculating Surface Area: Surface area of a rectangular block = 2 (l x w) + 2 (l x h) + 2 (w x h). Use the data in Table 1.4 to fill in Table 1.5. Table 1.5 Surface Area Calculations Small Medium calculations calculations SA __________ cm2 SA = __________ cm2 Large calculations SA = __________ cm2 Calculating Volume: Volume of a rectangular block = l x w x h Fill in Table 1.6 Table 1.6 Volume Calculations Small calculations Vol __________ cm3 Medium calculations Vol __________ cm3 Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C Large calculations Vol __________ cm3 7 Exercise 1 – Measurements and Lab Techniques Calculating Surface Area : Volume (SA : Vol) Divide the surface area (cm2) by the volume (cm3) recording your answer in Table 1.7 Table 1.7 Surface Area, Volume, and SA: Vol Surface area (cm2) Small Medium Large Volume (cm3) SA : Vol Use the data from Table 1.7 to construct a bar plot in Fig. 1.2. Fig. 1.2 Relationship Between SA : Vol and Block Size The plot just constructed provides a visual illustration of the changes in SA : Vol with blocks of different volumes. Describe the kind of relationship you see: This SA : Vol ratio is very important in biology and helps to explain why cells have typically not grown larger than microscope size. The SA : Vol affects the movement of materials in and out of cells. Very small cells have high ratios and can usually supply most all the cell’s transportation requirements through diffusion. But, as you noticed in this procedure an object’s ratio decreases relatively quickly as it grows in size. This larger size means less surface area is available per unit of volume. The result is as cells grow larger, diffusion is not longer sufficient to meet all the cells needs. Cells must either divide to maintain that larger ratio or develop elaborate internal transport mechanisms. These topics will be discussed further in later sections of this course. Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 8 Exercise 1 – Measurements and Lab Techniques Part C: Measuring Volume of Irregular Shaped Solids Calculation of the volume of regularly shaped objects like rectangular blocks or spheres is straightforward. However, how can we obtain the volume of something like a piece of bone, or rock, or a fossil? Their irregular shapes preclude the use of any formula. However, two important facts are useful to remember o A submerged object will displace an amount of water equal to its volume o 1 ml = 1 cm3 Procedure 1. Obtain a 500 ml graduated cylinder 2. Fill cylinder to about the midway mark with tap water 3. Note the level of water in the cylinder in ml Reading a graduated cylinder Graduated cylinders are marked off in volume units Larger units are indicated (e.g., 10 ml, 20 ml, 50 ml, etc.) Smaller units are not marked but are indicated You must pay attention to these smaller, unmarked units to get an accurate reading for volume Due to capillary attraction, a liquid in a graduated cylinder will not form a flat surface. Instead, it curves up the sides forming a dip or meniscus. By convention, we always read the volume of the liquid from the bottom of the meniscus (Fig. 1.3) Fig. 1.3 Graduated cylinder readings (record you readings in the blanks) ___ ml ___ ml ___ ml 4. Being careful not to splash out any of the water in the cylinder, submerge the irregularly shaped object. Make sure it is completely underwater. Objects that float should be held underwater 5. Make note of the level of water in the graduated cylinder again 6. Subtract the initial volume of water from this final reading (express your answer in cm3) 7. Record your data in Table 1.8 Table 1.8 Water Displacement Data Irregularly shaped object Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C Volume (cm3) 9 Exercise 1 – Measurements and Lab Techniques Part D: Measuring Mass and Density Procedure 1. Use a triple-beam balance to determine the mass (in grams) of the objects listed in Table 1.9 2. Calculate the volume of these objects using the methods described previously 3. Calculate density of each object Density = mass (g) / volume (ml or cm3) 4. Record your answers in Table 1.9 Table 1.9 Mass, Volume, and Density of Various Objects Mass (g) Volume (cm3 or ml) Density (g / cm3 or ml) irregularly shaped object _______________________ small block (volume from Table 1.7) medium block (volume from Table 1.7) The density of water is 1 g /ml or cm3. In comparing the densities of the objects in Table 1.9 to the density of water, which objects float? The densities of these objects are __________ than that of water. which objects sink? The densities of these objects are __________ than that of water. Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 10 Exercise 1 – Measurements and Lab Techniques Practice Problems 1. Calculate the surface area and volume of a rectangular solid measuring 8.6 cm in length, 2.4 cm in width, and 3.8 cm in height (use appropriate units). The mass of this block is 121.6 g. What is its density and will it sink or float in water? 2. Calculate the surface area and volume of a rectangular solid measuring 43 mm in length, 12 mm in width, and 19 mm in height (report your answer in cm2 and cm3). The mass of this block is 8.5 g. What is its density and will it sink or float in water? Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 11 Exercise 1 – Measurements and Lab Techniques 3. Initial volume of water in a graduated cylinder is 0.26 l. Completely submersing an irregularly shaped object into the water raises the water level to 512 ml. What is the volume of the object (express your answer in cm3)? The mass of this object is 60 g. What is its density and will it sink or float in water? 4. A principle of ecology known as Bergmann’s rule states an organism of a given species will be larger in colder latitudes than those in warmer ones. For example, grey squirrels (Sciurus carolinensis) in Florida are significantly smaller than their counterparts in New York. Using what you have learned about changes in surface area with volume and its implications for membrane transfer, provide a scientifically reasonable explanation for this observation. Lake-Sumter State College, Leesburg Laboratory Manual for BSC 1010C 12
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