REVIEW Rab3A small GTP-binding protein in Ca2+-dependent exocytosis Yoshimi Takai1,2,*, Takuya Sasaki1, Hiromichi Shirataki1 and Hiroyuki Nakanishi2 1 2 Department of Molecular Biology and Biochemistry, Osaka University Medical School, Suita 565; and Takai Biotimer Project, ERATO, Research Development Corporation of Japan, Kobe 651-22, Japan There exists a small GTP-binding protein (G protein) superfamily, consisting of more than 50 members, from yeast to mammal. The Rab family belongs to this superfamily and is implicated in intracellular vesicle trafficking. Rab3A small G protein is a member of the Rab3 subfamily which belongs to this Rab family. The regulators and downstream targets of Rab3A have been isolated, and evidence is accumulating that Rab3A and these Rab3A-interacting proteins are involved in Ca2+-dependent exocytosis, particularly in neurotransmitter release from nerve terminals. Introduction There is a small GTP-binding protein (G protein) superfamily, consisting of more than 50 members, from yeast to mammal, as shown in Table 1. According to their structures, these small G proteins are grouped into at least six families: the Ras, Rho, Rab, Arf, Sar1 and Ran families. The Ras subfamily of the Ras family, consisting of Ha-Ras, Ki-Ras and N-Ras, regulates gene expression at least through a MAP kinase cascade. The Rho family regulates cytoskeleton through reorganization of actin filaments and gene expression through another MAP kinase cascade, a JNK kinase cascade. The Rab family regulates intracellular vesicle trafficking. The Arf and Sar1 families also regulate intracellular vesicle trafficking. The Ran family regulates protein transport into the nucleus. It is therefore well established that small G proteins play an important role in various cell functions. Transmembrane proteins are transported from one membrane compartment to another by vesicles. For instance, membrane receptors such as the EGF and PDGF receptors are synthesized on ribosomes and transported to the endoplasmic reticulum (ER) membrane, from where they are transported to the plasma membrane through the Golgi complex by vesicles. Soluble substances, such as those secreted outside the * Corresponding author: Fax: +81 6 879 3419. # Blackwell Science Limited cell from the plasma membrane, are also transported by vesicles. For instance, hormones and digestive enzymes are synthesized on ribosomes and transported into the ER lumen from where they are transported to the plasma membrane through the Golgi complex by vesicles and finally secreted from the cell. Exocytosis, endocytosis and transcytosis are performed by intracellular vesicle trafficking. There are two exocytotic pathways: one is a regulated pathway and the other is a constitutive pathway. In the former pathway, in most cases exocytosis is regulated by Ca2+. Vesicle trafficking is also involved in various other cell functions, such as the formation of cell polarity, cytokinesis and cell motility. There are at least four principal mechanisms in intracellular vesicle trafficking, as shown in Fig. 1: (i) budding of a vesicle from the donor membrane; (ii) targeting of the vesicle to the acceptor membrane; (iii) docking of the vesicle to the acceptor membrane; and (iv) fusion of the vesicle with the acceptor membrane. The evidence that the Rab family members regulate intracellular vesicle trafficking was first obtained genetically in the budding yeast Saccharomyces cerevisiae. In the yeast, vesicles are transported to a bud to enlarge the plasma membrane as well as to secrete many proteins outside the cell. Many genes essential for secretion were isolated and named the Sec genes (Novick et al. 1980). One of the Sec genes, named the Sec4 gene, was shown to encode a small G Genes to Cells (1996) 1, 615–632 615 Y Takai et al. Table 1 Small G protein superfamily Ras Rho Rab Ha-Ras Ki-Ras N-Ras R-Ras RaI Rap1A Rap1B Rap2 Tc21 RhoA RhoB RhoC RhoG Rac1 Rac2 Cdc42 Tc10 Rab1A Rab1B Rab2 Rab3A Rab3B Rab3C Rab3D Rab4 Rab5A Rab5B Rab5C Rab6 Rab7 Rab8 Rab9 Rab10 Rab11 Rab12 Rab13 Rab14 Rab15 Rab16 Rab17 Rab18 Ras1 Ras2 Rsr1 Rho1 Rho2 Rho3 Rho4 Cdc42 Sec4 Ypt1 Ypt2 Ypt3 Ypt4 Ypt5 Ypt6 Ypt7 Ypt8 Arf Sar1 Ran Arf1 Arf2 Arf3 Arf4 Arf5 Arf6 Sar1A Sar1B Ran Arf1 Arf2 Arf3 Sar1 Gsp1 Gsp2 Mammal Rab19 Rab20 Rab21 Rab22 Rab23 Rab24 Rab25 Rab26 Rab27 Yeast protein involved in vesicle trafficking from the Golgi complex to the plasma membrane (Salminen & Novick 1987). On the other hand, the Ypt1 gene was isolated as a gene encoding a Ras-like G protein (Gallwitz et al. 1983). Ypt1 was also shown to be involved in vesicle trafficking from ER to Golgi (Segev et al. 1988). Thereafter, evidence has accumulated that the Rab family members are involved in vesicle trafficking, not Figure 1 Four principal mechanisms of intracellular vesicle trafficking. 616 Genes to Cells (1996) 1, 615–632 only in yeast but also in mammal (Simons & Zerial 1993; Nuoffer & Balch 1994; Pfeffer 1994). There are more than 30 members in the mammalian Rab family and each member is located in each membrane compartment and exerts its specific function as shown in Fig. 2 and Table 2. The precise mechanism of the Rab family members in regulating vesicle trafficking has not been fully understood, but one group of the Rab family members regulate the budding process and another group regulates the targeting and docking processes. In the targeting and docking processes, the Rab family members are assumed to regulate the assembly of the SNARE components, which is also involved in the targeting and docking processes of the vesicle with the acceptor membrane. This docking process is followed by the fusion process, which is mediated by the general fusion machinery, named the NSF/SNAP system (NSF N -ethylmaleimide-sensitive fusion protein; SNAP soluble NSF attachment protein; and SNARE SNAP receptor.) The NSF/SNAP and SNARE systems have been reviewed previously (Rothman 1994). However, it remains to be clarified how the Rab family members regulate the SNARE system. Of the many Rab family members involved in the targeting and docking processes, the mode of action of # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis Figure 2 Subcellular localization of each Rab family member. Plain, localization of each Rab family member; Italic, functioning site of each Rab family member. Rab3A (a member of the Rab3 subfamily) has been extensively investigated, and evidence has accumulated that Rab3A is involved in Ca2+-dependent exocytosis, particularly in neurotransmitter release. Moreover, the regulators of Rab3A, named Rab GDP dissociation inhibitor (Rab GDI), Rab3A GDP/GTP exchange protein (Rab3A GEP), Rab3A GTPase activating protein (Rab3A GAP), and a downstream target of Rab3A named rabphilin3, have been isolated and characterized. In this review article, we focus on Rab3A and molecules which interact with it and describe their functions and modes of action in neurotransmitter release. # Blackwell Science Limited Rab3A Isolation of Rab3A Rab3A is a member of the Rab3 subfamily consisting of four members, Rab3A, Rab3B, Rab3C and Rab3D. All of these members show calculated Mrs of about 25 000. Rab3A was found by two different methods: in one, a small G protein was purified from bovine brain and its partial amino acid sequence was determined (Kikuchi et al. 1988). On the basis of this information, its cDNA was cloned from a bovine brain cDNA library and its primary structure was determined (Matsui et al. 1988). Genes to Cells (1996) 1, 615–632 617 Y Takai et al. Table 2 Function of each Rab family member Protein Vesicle trafficking Rab1A Rab1B Rab8 Rab9 ER to Golgi ER to cis Golgi Cis Golgi to medial Golgi ER to Golgi Ca2+-dependent exocytosis Early endosome-plasma membrane recycling Plasma membrane to early endosome Fusion of early endosome Trans Golgi network to basolateral plasma membrane Late endosome to trans Golgi network Ypt1 Ypt7 Sec4 Sar1 ER to Golgi Endocytosis Post-Golgi to plasma membrane ER to Golgi Mammal Rab2 Rab3A Rab4A Rab5A Yeast During this cloning, two other highly homologous cDNAs were cloned and their primary structures were determined. They were named Rab3B and Rab3C. In the second method, Rab3A was isolated from a rat brain cDNA library by the use of several oligonucleotide mixtures corresponding to the conserved region of the Ras subfamily members as a probe (Touchot et al. 1987). Rab3D was later cloned as a Rab3-like molecule from the differentiated 3T3-l adipocyte-specific subtractive library (Baldini et al. 1992). The human Rab3A gene has been shown to be located in chromosome 19, with a regional localization on 19p13.2 (Rousseau-Merck et al. 1989). The geranylgeranyl moiety is donated by geranylgeranylpyrophosphate by the action of geranylgeranyltransferase type II. The methyl moiety is donated by S-adenosylmethionine by the action of methyltransferase. These lipid modifications are essential for the interaction of Rab3A with the membrane and its regulators as described below. It is not currently known whether the post-translational modifications of the Rab3 subfamily members turn over rapidly in reponse to an agonist, but it is generally believed that the geranylgeranylation of small G proteins is an irreversible reaction, whereas the carboxylmethylation is a reversible reaction in intact cells. Structure of Rab3A Tissue and subcellular distributions of Rab3A As shown in Fig. 3, all the four Rab3 subfamily members have consensus amino acid sequences for GDP/GTP-binding and GTPase activities as have been described for other G proteins. These sequences compromise four regions: (1) (Gly-X-X-X-X-GlyLys), (2) (Asp-Thr-Ala-Gly), (3) (Asn-Lys-X-Asp), and (4) (Glu-X-Ser-Ala-X) (X: any amino acid). Regions 1 and 2 are responsible for GTPase activity and regions 3 and 4 for GDP/GTP-binding activity. Moreover, all the four Rab 3 subfamily members have a unique Cterminal structure of Cys-X-Cys, which undergoes post-translational modifications with lipids: the two cysteine residues are geranylgeranylated through thioether linkage; the C-terminal cysteine residue is further carboxylmethylated (Farnsworth et al. 1991). Northern and Western blot analyses indicate that Rab3A is detected in cells having a regulated secretion pathway (including neuronal cells, exocrine cells and endocrine cells) and not in cells having only a constitutive secretion pathway (including hepatocytes and lymphocytes) (Mizoguchi et al. 1989; Sano et al. 1989). In situ hybridization has revealed that the Rab3A and Rab3B mRNAs are colocalized in most neurones in all brain areas examined, but that, in each of these areas, subsets of neurones preferentially express either the Rab3A or Rab3B mRNA (Stettler et al. 1995). In neuroendocrine PC12 cells, Rab3A is expressed, but Rab3B is not (Weber et al. 1994). In the brain, Rab3A is highly concentrated on synaptic vesicles in the presynaptic nerve terminal (Fischer von Mollard et al. 1990; 618 Genes to Cells (1996) 1, 615–632 # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis Figure 3 Structures of Rab3 subfamily members. 1 and 2, consensus sequences for GTPase activity; 3 and 4, consensus sequences for GDP/GTP-binding activity. Lines in Rab3B, Rab3C and Rab3D indicate the different amino acids from Rab3A. Mizoguchi et al. 1990). Immunoelectromicroscopic analysis on the subcellular localization of Rab3A in neuromuscular junctions indicates that Rab3A is uniformly distributed over synaptic vesicles in the nerve terminal of motor neurones (Mizoguchi et al. 1994). In adrenal medulla chromaffin cells, Rab3A is present on synaptic-like microvesicles and secretory granules (Darchen et al. 1990, 1995; Fischer von Mollard et al. 1990). Two interconvertible forms of Rab3A Like other G proteins, Rab3A has two interconvertible forms: GDP-bound and GTP-bound, as shown in Fig. 4. The GDP-bound form is inactive and the GTP-bound form is active and interacts with its downstream target. Rab3A receives an upstream signal, is converted from the GDP-bound form to the GTP-bound form and transduces a signal to the downstream target. The GDPbound form is converted to the GTP-bound form by a GDP/GTP exchange reaction, whereas the GTP-bound form is converted to the GDP-bound form by a GTPase reaction. The rate-limiting step of the GDP/GTP exchange reaction is the dissociation of GDP from the GDP-bound form (Shoji et al. 1989). Once GDP dissociates from the GDP-bound form, the guanine Figure 4 Modes of activation and action of Rab3A. # Blackwell Science Limited Genes to Cells (1996) 1, 615–632 619 Y Takai et al. nucleotide-free form is transiently produced. Since the intracellular concentration of GTP is more than 100fold higher than that of GDP, GTP binds to the guanine nucleotide-free form, resulting in the formation of the GTP-bound form. Rab3A has intrinsic GTPase activity, and GTP bound to Rab3A is hydrolysed intramolecularly, resulting in the formation of the GDPbound form. Recent kinetic analysis on the interaction of GDP and GTP with the lipid-modified and unmodified forms of Rab3A indicates that the lipid modifications of Rab3A intramolecularly affect the interaction of GTP with Rab3A (unpublished data). GDP dissociates from both the lipid-modified form and the lipid-unmodified form at similar rates. In contrast, GTP binds to the lipidmodified, guanine nucleotide-free form of Rab3A more slowly than it binds to the lipid-unmodified, guanine nucleotide-free form. Moreover, GTP rapidly dissociates from the lipid-modified form of Rab3A, whereas it practically does not dissociate from the lipid-unmodified form. This slow binding of GTP to the lipid-modified, guanine nucleotide-free form of Rab3A is markedly stimulated by Rab3A GEP, and this rapid dissociation of GTP from the lipid-modified form of Rab3A is markedly inhibited by dimyristoyl phosphatidylcholine (DMPC). It has been shown that GTP dissociates more rapidly from the lipid-modified form of Arf1 than from the lipid-unmodified form, and that this rapid dissociation is inhibited by phospholipid (Franco et al. 1995). Arf1 is myristoylated at its N-terminal region; three-dimensional structural analysis of the GDP/GTP-binding region of Arf1 indicates that the N-terminal region is located near its GDP/GTP-binding region (Amor et al. 1994). Therefore the lipid moiety may interact intramolecularly with the GDP/GTP-binding region and affect its conformation. The three-dimensional structural analysis of Rab3A has not been carried out, but it is possible that the lipid moieties of the C-terminal region of Rab3A also interact with its GDP/GTPbinding region and affect its conformation. Rab3A GEP and phospholipid may interact with the lipid moieties of Rab3A and inhibit their effect on the GDP/GTPbinding region. It is unknown which modification, geranylgeranylation or methylation, is involved in this function. Regulators of Rab3A Interconversion of Rab3A between its two forms is regulated as shown in Fig. 4. There are two types of 620 Genes to Cells (1996) 1, 615–632 regulators which regulate the GDP/GTP exchange reaction of Rab3A: one inhibits the reaction and is named Rab GDI, whereas the other stimulates it and is named Rab3A GEP (GEP is also called GDP/ GTP exchange factor (GEF) or guanine nucleotide releasing factor (GNRF)). There is one regulator that stimulates the GTPase reaction of Rab3A, named Rab3A GAP. Rab GDI Isolation and structure of Rab GDI Rab GDI constitutes a family consisting of at least three members: Rab GDI, GDI and GDI . All of these members show calculated Mrs of about 50 000 (Matsui et al. 1990; Nishimura et al. 1994; Shisheva et al. 1994). Rab GDI was first purified from the bovine brain and its partial amino acid sequence was subsequently determined (Sasaki et al. 1990). On the basis of this information, its cDNA was cloned from a bovine brain cDNA library and its primary structure was determined (Matsui et al. 1990). Rab GDI and GDI were isolated from the rat brain and mouse skeletal muscle cDNA libraries, respectively, by the use of Rab GDI as a probe with low stringency (Nishimura et al. 1994; Shisheva et al. 1994). Rab GDI is specifically expressed in the brain, whereas Rab GDI is expressed in all tissues examined (Nishimura et al. 1994). The tissue distribution of Rab GDI has not been examined. The human Rab GDI gene has been shown to be located in chromosome X, with a regional localization on Xq28 (Sedlacek et al. 1994). Rab GDI is found in yeast and Drosophila, as well as in mammal, and is named GDI1 and dGDI, respectively, (Zahner & Cheney 1993; Garrett et al. 1994). GDI1 and dGDI show 50% and 68% amino acid sequence identities with bovine Rab GDI. Recent Southern blot analysis has shown that there are at least five genes of Rab GDI in both the rat and mouse genomes (Janoueix-Lerosey et al. 1995). Rab GDI may constitute a large family. The Rab GDI family has a homology to Rab-escort protein, which delivers the newly synthesized Rab family members to the catalytic subunit of geranylgeranyltransferase type II (Seabra et al. 1992, 1993; Andres et al. 1993; Cremers et al. 1994). Rab-escort protein is referred to as the choroideremia gene product, which, when defective, contributes to a human degenerative retinal disease (Cremers et al. 1992; Seabra et al. 1992, 1993; Andres et al. 1993; von Bokhoven et al. 1994). Very recently, the three-dimensional structure of Rab GDI has been determined (Schalk et al. 1996). The # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis structure of Rab GDI is remarkably similar to FADcontaining monooxygenases and oxidases, although its physiological significance is not clear. Two of the sequence regions conserved with the Rab-escort protein form a compact structure at the apex of Rab GDI, and may contribute to its unique biochemical properties, as described below. Unique biochemical properties of Rab GDI Purified Rab GDI is a soluble protein and shows unique biochemical properties: it interacts with the lipidmodified, GDP-bound form of Rab3A to form a stable ternary complex, but not with any other forms such as the lipid-modified, GTP-bound form, the lipid-unmodified, GDP-bound form or the lipid-unmodified, GTPbound form (Araki et al. 1990, 1991). Moreover, Rab GDI only inhibits the dissociation of GDP from the lipid-modified form of Rab3A. The lipidmodified form of Rab3A, irrespective of the GDPbound form and the GTP-bound form, but not the lipid-unmodified form, are associated with any membrane, such as erythrocyte ghosts and synaptic vesicles, in a cell-free system. Rab GDI inhibits this association of only the GDP-bound form by forming the ternary complex. Moreover, Rab GDI induces the dissociation of only the lipid-modified, GDP-bound form of Rab3A, which is prebound to the membranes, by formation of the ternary complex. These biochemical properties confer two activities on Rab GDI: one is to regulate the GDP/GTP exchange reaction of Rab3A; the other is to regulate the reversible binding of Rab3A to membranes. On the other hand, Rab GDI has been shown to be active, not only on Rab3A, but also on all the Rab family members thus far examined, including yeast Sec4 and Ypt1 (Sasaki et al. 1991; Garrett et al. 1993; Soldati et al. 1993; Ullrich et al. 1993; Beranger et al. 1994). The biochemical properties of Rab GDI, including the substrate specificity and requirement of the lipid modifications of their substrates, are similar (Nishimura et al. 1994; Araki et al. 1995). The biochemical properties of Rab GDI have not been studied, but Rab GDI has been shown to exhibit a unique intracellular distribution. Although Rab GDI is a soluble protein, Rab GDI is located in the perinuclear region of differentiated 3T3-L1 adipocytes (Shisheva et al. 1994, 1995). It is yet to be clarified whether there are functional differences among the isoforms of Rab GDI. Mode of action of Rab GDI An attractive model for the mode of action of the Rab # Blackwell Science Limited Figure 5 (A) A model for the mode of action of Rab family members in targeting and docking processes in vesicle trafficking. (B) A model for the mode of action of Rab GDI in Rab memberregulated vesicle trafficking. family members in the targeting and docking processes in vesicle trafficking was proposed (Bourne 1988). This model was based on the mode of action of elongation factor Tu in protein synthesis. As shown in Fig. 5A, the GDP-bound form of each Rab family member is located in the cytosol. When it is converted to the GTP-bound form, it binds to a vesicle which is then transported to the acceptor membrane. According to this model, GTP hydrolysis occurs before the fusion of the vesicle with the membrane. After the hydrolysis, the GDP-bound form is translocated to the cytosol. In this model, two types of cycling of each Rab family member between the GDP-bound form and the GTPbound form, and between the cytosol and the membrane, are essential for their action. Because Rab Genes to Cells (1996) 1, 615–632 621 Y Takai et al. GDI is a soluble protein and has the potential to regulate these two types of cycling, we proposed the mode of action of Rab GDI in the Rab family member-regulated vesicle trafficking as shown in Fig. 5B: the GDP-bound form of each Rab family member is complexed with Rab GDI and remains in the cytosol. After it is released from Rab GDI and is converted to the GTP-bound form, or after it is converted to the GTP-bound form and is released from Rab GDI, the GTP-bound form is associated with the vesicle, which is consequently transported to the acceptor membrane. Before the fusion of the vesicle with the membrane, the GTPbound form is converted to the GDP-bound form. Once the GDP-bound form is produced on the membrane, it is complexed with Rab GDI and is translocated from the membrane to the cytosol. The Rab family members are also assumed to cycle between the GDP-bound and the GTP-bound form and between the cytosol and the membrane in the budding process of vesicle trafficking. The model shown in Fig. 5B is also applicable to this budding process. Several lines of evidence supporting this model have accumulated: (i) many Rab family members, including Rab1, Rab3A, Rab6 and Rab9, have been shown to be complexed with Rab GDI in the cytosol of various tissues and cells (Regazzi et al. 1992; Soldati et al. 1993; Peter et al. 1994; Yang et al. 1994); (ii) genetic analysis of yeast has shown that Rab GDI indeed regulates the Sec4 function (Garrett et al. 1994); (iii) it has been proved by use of cell-free assay systems for vesicle trafficking between ER and Golgi complex and inter-cisternal vesicle trafficking in Golgi complex, that Rab GDI indeed functions in these systems (Elazar et al. 1994; Peter et al. 1994). Recent studies using Rab5 and Rab9 have shown that Rab GDI has an additional function to transport these small G proteins to the membrane, where they are converted to the GTP-bound form (Dirac-Svejstrup et al. 1994; Soldati et al. 1994; Ullrich et al. 1994). The Rab family members may cycle by the action of Rab GDI in the cytosol in the immediate vicinity of the membrane. It has also been shown by use of Rab5 that Rab GDI serves as a cytosolic acceptor for the newly synthesized, lipid-modified Rab family members (Sanford et al. 1995). The Rab family members may be transferred from Rab-escort protein to Rab GDI after the lipid modifications. Rab3A GEP Conversion of the GDP-bound form of Rab3A to the GTP-bound form is regulated by GEP. Thus far two GEPs for Rab3A have been reported: one is a GEP, 622 Genes to Cells (1996) 1, 615–632 named MSS4 (Burton et al. 1993), which was isolated as a mammalian counterpart of yeast DSS4 (a GEP for yeast Sec4 and Ypt1 (Moya et al. 1993)); and the other is a GEP, named Rab3A GRF (Burstein & Macara 1992), which was partially purified from rat brain. MSS4 shows a calculated Mr of about 14 000 (Burton et al. 1993). Recombinant MSS4 is not only active on Rab3A but also on other Rab family members, including Rab1, Rab8, Rab10, Sec4 and Ypt1 (Burton et al. 1994). Recombinant MSS4 is equally active on both the lipidmodified and unmodified forms of Rab3A (Miyazaki et al. 1994). The action of MSS4 is inhibited by Rab GDI, with the lipid-modified form of Rab3A as a substrate (Miyazaki et al. 1994). Rab3A GRF is also sensitive to the action of Rab GDI, but it prefers the lipid-modified form of Rab3A to the lipid-unmodified form (Burstein et al. 1993; Miyazaki et al. 1994). The substrate specificity of Rab3A GRF has not been studied intensively. A GEP specific for Rab3A has recently been highly purified from rat brain (unpublished data). There are two isoforms, named Rab3A GEPI and GEPII. Rab3A GEPI and GEPII demonstrate similar physical and kinetic properties. Both show Mrs of about 200 000 and 270 000 as estimated by sodium dodecylsulphate–polyacrylamide gel electrophoresis (SDSPAGE) and gel filtration, respectively. Rab3A GEPI and GEPII are active on the Rab3 subfamily members and inactive on other Rab family members so far examined, including Rab2, Rab5, Rab10 and Rab11. They are active on the lipid-modified form of Rab3A and inactive on the lipid-unmodified form. Their action is inhibited by Rab GDI. It remains to be clarified whether Rab3A GEPs are identical with Rab3A GRF. It is also not known which GEP functions in vivo for activating Rab3A, but Rab3A GEP may be the most probable candidate because it is specific for the Rab3 subfamily. The precise mechanism for the mode of action of Rab3A GEP in the GDP/GTP exchange reaction of Rab3A is not known, but on the assumption that the mode of action of Rab3A GEP is principally similar to that of well-characterized Ras GEPs, such as Sos and Cdc25, the following mechanism is conceivable: Rab3A GEP forms a complex with the GDP-bound form of Rab3A and stimulates the dissociation of GDP from Rab3A to produce a complex of Rab3A GEP with the guanine nucleotide-free form. For the interaction of Rab3A GEP with the GDP-bound form of Rab3A and the guanine nucleotide-free form, the lipid moieties of Rab3A may be necessary. The Rab3A GEP in this complex is then replaced by GTP to # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis produce the GTP-bound form. In this way, Rab3A GEP catalytically stimulates the GDP/GTP exchange reaction of Rab3A. The binding of GTP to the guanine nucleotide-free, lipid-modified form of Rab3A is very slow—this binding is facilitated by Rab3A GEP, presumably by masking the lipid-moieties (unpublished data). Rab GDI displacement factor The GDP-bound form of Rab3A complexed with Rab GDI is not converted to the GTP-bound form by the action of any of the Rab3A GEPs described above, suggesting that another factor is also necessary for this conversion. It has been shown that the GDP-bound form of Rab9 complexed with Rab GDI is converted to the GTP-bound form when the complex is incubated with the endosome membrane (Soldati et al. 1994). On the basis of this observation, it has been proposed that a membrane factor is necessary for the dissociation of the GDP-bound form of Rab9 from Rab GDI—this factor is named GDI displacement factor (GDF) (Soldati et al. 1994). A similar result has also been obtained for Rab5 (Ullrich et al. 1994). GDF may also function in recruiting Rab GDI to the membrane. GDF has not been identified, and it is not known whether GDF is a specific regulator of each Rab family member or a general regulator of all the Rab family members like Rab GDI. If the former is the case, a GDF specific for Rab3A may be present. Rab3A GAP Conversion from the GTP-bound form of Rab3A to the GDP-bound form is regulated by GAP. Rab3A GAP was first purified partially from the rat brain (Burstein et al. 1991), but its properties have not been studied intensively. A GAP specific for Rab3A has recently been highly purified and characterized from the rat brain (unpublished data). The purified sample of Rab3A GAP consists of two subunits with Mrs of about 130 000 and 150 000, as estimated by SDS-PAGE. The protein shows a Mr of about 300 000 both by gel filtration and by sucrose density gradient ultracentrifugation, suggesting that Rab3A GAP is a heterodimeric protein. The small Mr size protein appears to be the catalytic subunit. Rab3A GAP is active on the Rab3 subfamily members, but inactive on other Rab family members so far examined, including at least Rab2, Rab5 and Rab11. It is active on the lipid-modified form of Rab3A but is inactive on the lipid-unmodified form. It is not known when and how the GTP-bound form of # Blackwell Science Limited Rab3A is converted to the GDP-bound form by the action of Rab3A GAP, but this point will be discussed below. Downstream targets of Rab3A Rabphilin3 Isolation of rabphilin3 Once the GTP-bound form of Rab3A is produced, it appears to interact specifically with synaptic vesicles, because Rab3A is specifically localized on synaptic vesicles. It is assumed that this specific localization of the GTP-bound form of Rab3A is due to the presence of a specific protein on synaptic vesicles, which interacts with the GTP-bound form of Rab3A. On this assumption, this downstream target of Rab3A was detected by the use of a cross-linking technique (Shirataki et al. 1992). One protein, which was specifically cross-linked with the GTP-bound form of radioiodinated Rab3A, was detected in the bovine brain crude membrane fraction. This cross-linking was competitively inhibited by the GTP-bound form of nonradioiodinated Rab3A, but not by the GDPbound form. By the use of this assay method, this protein was purified and its partial amino acid sequence was determined. On the basis of this information, its cDNA was cloned from a bovine brain cDNA library and its primary structure was determined (Shirataki et al. 1993). This protein was named rabphilin-3A. Recombinant rabphilin-3A indeed prefers the GTP-bound form of Rab3A to the GDP-bound form. It also interacts with the GTPbound form of Rab3B and Rab3C, but does not interact with other Rab family members, including at least Rab1B, Rab5 and Rab11 (Li et al. 1994; Weber et al. 1996; and our unpublished data). It may therefore be better to change the name of rabphilin-3A to rabphilin3. Rabphilin3 has also been found in Caenorhabditis elegans (Brose et al. 1995). Structure of rabphilin3 Rabphilin3 has a calculated Mr of about 78 000. Structural analysis indicates that rabphilin3 has no transmembrane segment but has two C2-like domains (C2A domain and C2B domain) at its C-terminal region, as shown in Fig. 6 (Shirataki et al. 1993). The C2 domain was originally found in protein kinase C, which is activated by Ca2+ and phospholipid, particularly phosphatidylserine (Nishizuka 1988). Protein kinase C has one C2 domain, but synaptotagmin has been shown to have two C2-like domains (C2A domain Genes to Cells (1996) 1, 615–632 623 Y Takai et al. Figure 6 Structures of rabphilin3, protein kinase C and synaptotagmin. and C2B domain) and to interact with Ca2+ and phospholipid, particularly phosphatidylserine (Perin et al. 1990). This protein constitutes a family consisting of at least eight members (Li et al. 1995). The originally isolated member, synaptotagmin I, is specifically localized on synaptic vesicles through its one transmembrane segment and has been suggested to serve as a Ca2+ sensor for neurotransmitter release (Perin et al. 1990; Brose et al. 1992; Geppert et al. 1994b). Recombinant rabphilin3 actually interacts with Ca2+ and phospholipid, particularly phosphatidylserine, at the C2-like domains, whereas it interacts with Rab3A at its N-terminal region (Yamaguchi et al. 1993). Thus, rabphilin3 has at least two functionally different domains, the N-terminal Rab3Abinding domain and the C-terminal Ca2+- and phospholipid-binding C2-like domain. We named these domains the Rab3 domain and the C2 domain, respectively. Recent analysis indicates that Rab3A interacts with amino acid residues 40–170 of rabphilin3 (Stahl et al. 1996). This region has two repeats of a CysX2-Cys (X: any amino acid) structure which are also found in the region of Raf protein kinase which interacts with Ras and Rap1. In addition to these two domains of rabphilin3, the middle region shown in Fig. 6 is rich in prolines and serine/threonine phosphorylation sites and we have called it the M domain. Indeed, rabphilin3 is phosphorylated by protein kinase A and calmodulindependent protein kinase II (CaMKII) (Kato et al. 624 Genes to Cells (1996) 1, 615–632 1994; Numata et al. 1994; Fykse et al. 1995) in a cell-free system. We have shown that Ser34, Thr205, Thr209 and Thr537 are phosphorylated by CaMKII, whereas another group has shown that Ser234 and Ser274 are phosphorylated. The reason for these different results is unknown, but may be due to different experimental conditions. The function of the phosphorylation of rabphilin3 remains to be clarified, but four of the six phosphorylation sites are located at the M domain and this domain may also have its own specific function. Tissue and subcellular distributions of rabphilin3 Northern and Western blot analyses indicate that rabphilin3 is expressed in neuronal cells, but not in other cells, including exocrine cells and endocrine cells where Rab3A is expressed (Shirataki et al. 1993). In the cells where Rab3A is expressed but rabphilin3 is not, a rabphilin3 isoform may be present. In the brain, rabphilin3 is highly concentrated on synaptic vesicles in the presynaptic nerve terminal (Mizoguchi et al. 1994). Immunoelectromicroscopic analysis of the subcellular distribution of rabphilin3 in neuromuscular junctions indicates that it is uniformly distributed to most synaptic vesicles in the nerve terminal of motor neurones and that its distribution is similar to that of Rab3A (Mizoguchi et al. 1994). We have shown that rabphilin3 interacts with isolated synaptic vesicles in dose-dependent and saturable # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis manners (Shirataki et al. 1994). This interaction is observed when the synaptic vesicles are previously deprived of Rab3A by the use of Rab GDI or associated with large amounts of exogenous Rab3A, but is abolished by prior digestion of the vesicles with trypsin. These results suggest that rabphilin3 is associated with the vesicles through its anchoring protein, irrespective of the presence or absence of Rab3A. This result is consistent with the structural property of rabphilin3 that it has no transmembrane segment. Therefore, it is likely that the specific localization of rabphilin3 is determined by the specific localization of its anchoring protein. In contrast to our results, however, another group has suggested that rabphilin3 is associated with synaptic vesicles through Rab3A, on the basis of the observations that, in Rab3A-deficient mice, rabphilin3 was decreased in synapses (Li et al. 1994) and that Rab GDI removed both Rab3A and rabphilin3 from isolated synaptic vesicles (Stahl et al. 1996). However, these studies have not shown directly that rabphilin3 interacts with the vesicles in a Rab3Adependent manner, whereas we have directly shown that rabphilin3 interacts with the vesicles in a Rab3Aindependent manner. Evidence for the involvement of the Rab3 subfamily members in vesicle trafficking There are several lines of evidence supporting the involvement of the Rab3 subfamily members in vesicle trafficking. In isolated nerve terminals, the stimulation of neurotransmitter release results in dissociation of Rab3A and Rab3C from synaptic vesicles (Fischer von Mollard et al. 1991, 1994), although inconsistent results have also been reported (Bielinski et al. 1993). When synthetic peptides corresponding to the putative effector domain of the Rab3 subfamily members are introduced into secretory cells, such as exocrine pancreas (Padfield et al. 1992; Edwardson et al. 1993; Li et al. 1993), mast cells (Oberhauser et al. 1992), chromaffin cells (Senyshyn et al. 1992) and cultured neurones (Richmond & Haydon 1993), they stimulate secretion, although opposite results have also been reported (Davidson et al. 1993), and several recent studies moreover suggested that the effects of these peptides could be attributed to another mechanism unrelated to the Rab3 subfamily members (Law et al. 1993; Piiper et al. 1993). The transient overexpression of a dominant active mutant of Rab3A has been shown to inhibit Ca2+-dependent secretion from bovine chromaffin cells and PC12 cells (Holz et al. 1994; Johannes et al. 1994). A similar # Blackwell Science Limited conclusion has been also reached when a dominant active mutant of Rab3A is microinjected into bovine chromaffin cells (Johannes et al. 1994). In contrast to the inhibitory effect of Rab3A, Rab3B has been shown to stimulate secretion. In antisense RNA experiments performed on anterior pituitary cells, reductions in Rab3B mRNA inhibits Ca2+-dependent secretion from these cells (Lledo et al. 1993). When a dominant active mutant of Rab3B is stably expressed in PC12 cells, where endogenous Rab3B is absent, the Ca2+-dependent norepinephrine secretion is markedly stimulated (Weber et al. 1996). The reason for these apparently opposite effects of Rab3A and Rab3B on the Ca2+dependent exocytosis is currently unknown, but these results, together with those of tissue and subcellular distributions of the Rab3 subfamily members, and by analogy with the functions of Sec4 and Ypt1, suggest that the Rab3 subfamily members are involved in Ca2+dependent exocytosis. Evidence for the involvement of rabphilin3 in Ca2+-dependent neurotransmitter release Because rabphilin3 interacts with the GTP-bound form of Rab3A, is specifically localized on synaptic vesicles and interacts with Ca2+, it is likely that rabphilin3, as well as synaptotagmin, plays a role in Ca2+-dependent neurotransmitter release. This assumption has recently been proven by the use of a human growth hormone (GH) co-expression assay (Chung et al. 1995; Komuro et al. 1996). In this system, GH is overexpressed in bovine adrenal chromaffin cells or PC12 cells. Exogenous GH is stored in dense core vesicles and released in response to an agonist in an extracellular Ca2+dependent manner. When the N-terminal fragment of rabphilin3 shown in Fig. 6 is co-overexpressed with human GH in bovine adrenal chromaffin cells, the Ca2+-dependent, agonist-induced GH release is markedly inhibited. In contrast, overexpression of the Cterminal fragment, which contains both a part of the M domain and the C2 domain, has no effect on GH release. Similar results have also been obtained by the use of PC12 cells (Komuro et al. 1996). However, in the PC12 cell experiment, overexpression of the C2 fragment inhibits the Ca2+-dependent, high K+induced GH release. The exact reason for the different effects of these two fragments is not known, but it may be due to the inhibitory effect of the M domain on the C2 domain. It has furthermore been shown that overexpression of the C2B fragment, but not the Genes to Cells (1996) 1, 615–632 625 Y Takai et al. Figure 7 A model for the modes of action of the Rab3A system, the synaptotagmin system and the NSF/SNAP and SNARE systems in neurotransmitter release. C2A fragment, inhibits secretion in the PC12 cell experiment. Evidence for the involvement of rabphilin3 in Ca2+dependent exocytosis has also been obtained by the use of a squid giant axon system, in which the presynaptic nerve terminal is large enough to be microinjected with the protein samples to be tested (unpublished data). The N-terminal fragment or the C2 fragment is microinjected into the nerve terminal whilst electrically stimulating this terminal. Postsynaptic electrical responses are recorded simultaneously to monitor neurotransmitter release. Microinjection of the Nterminal fragment or the C2 fragment inhibits Ca2+dependent neurotransmitter release. Electron microscopy has revealed that injections cause a reduction in the number of synaptic vesicles within 0.5 m of the plasma membrane, and a relative accumulation of predocked vesicles 50–100 nm away from the plasma membrane. In contrast, while microinjection of the peptides from the C2-like domains of synaptotagmin also inhibits Ca2+-dependent neurotransmitter release, this perturbation causes an accumulation of docked vesicles within 50 nm of the plasma membrane (Bommert et al. 1993). These ultrastructural data suggest that rabphilin3 is involved in the pre-docking 626 Genes to Cells (1996) 1, 615–632 process or the docking process, whereas synaptotagmin is involved in the fusion process that follows the docking process. These two lines of evidence indicate that the Rab3A-rabphilin3 system indeed functions in Ca2+- dependent exocytosis in intact cells. Possible function of rabphilin3 as a linker for the Rab3 system, the NSF/SNAP and SNARE systems and the Ca2+ system The exact mode of action of synaptotagmin in Ca2+dependent neurotransmitter release has not been established, but one fascinating function proposed is that synaptotagmin serves as a Ca2+-controlled negative regulator, as shown in Fig. 7. Namely, the docking and fusion of synaptic vesicles with the presynaptic plasma membranes are mediated by the NSF/SNAP and SNARE systems. In the SNARE system, the component located on the vesicles is vesicle-associated membrane protein (VAMP) and the components located on the plasma membrane are syntaxin and the 25 kDa synaptosomal-associated protein (SNAP-25). Before Ca2+ influx, synaptotagmin interacts with syntaxin and inhibits the operation of the NSF/SNAP # Blackwell Science Limited Rab3A and Ca2+-dependent exocytosis and SNARE systems. When Ca2+ influxes into the cytoplasm through the Ca2+ channel, it binds to synaptotagmin, causing the release of this inhibitory action to operate the NSF/SNAP and SNARE systems. A recent biochemical observation, however, shows that the C2A domain of synaptotagmin interacts with syntaxin in a Ca2+-dependent manner (Chapman et al. 1995; Li et al. 1995). It is therefore likely that synaptotagmin interacts with syntaxin after Ca2+ influx and then operates the NSF/SNAP and SNARE systems. In this case, synaptotagmin serves as a positive regulator for the stimulation of Ca2+-dependent exocytosis. It is also not known how rabphilin3 regulates synaptic vesicle trafficking, but evidence is accumulating that the Rab system is an upstream regulator of the NSF/SNAP and SNARE systems: (i) genetic analysis using the budding yeast has shown that Ypt1 directly or indirectly induces the assembly of the SNARE components (Lian et al. 1994; Sogaard et al. 1994); (ii) inhibition of the rabphilin3 function by microinjecting the N-terminal fragment or the C2 fragment into squid giant axons causes an accumulation of pre-docked vesicles 50–100 nm away from the plasma membrane as described above; and (iii) a dominant active mutant of Rab3A inhibits Ca2+-dependent exocytosis from chromaffin cells and PC12 cells (Holz et al. 1994; Johannes et al. 1994). These results suggest that the Rab3A–rabphilin3 system also regulates the NSF/SNAP and SNARE systems in neurotransmitter release. After the GTP-bound form of Rab3A is converted to the GDP-bound form by the action of Rab3A GAP, the Rab3A–rabphilin3 complex may dissociate and the fusion is then induced by the action of the NSF/SNAP and SNARE systems. This model for the mode of action of Rab3A seems to be consistent with the phenotype of Rab3A-deficient mice (Geppert et al. 1994a). These mice show large decreases in synaptic transmission only with repetitive stimulation, for which sequential synaptic vesicle recruitment to the presynaptic membrane is essential. In addition to this function of rabphilin3, it may also serve as a Ca2+ sensor, because rabphilin3 has two C2like domains, as does synaptotagmin. Our working model for the mode of action of the Rab3A–rabphilin3 system in neurotransmitter release is shown in Fig. 7. There is an acceptor protein directly or indirectly recognized by rabphilin3, complexed with the GTPbound form of Rab3A on the presynaptic plasma membrane. When rabphilin3 is complexed with the GTP-bound form of Rab3A, it interacts with this acceptor protein and thereby causes the docking of the vesicles with the presynaptic plasma membrane. Thus, # Blackwell Science Limited rabphilin3 may have at least three functional domains: the domains interacting with (i) Rab3A, (ii) an anchoring protein on synaptic vesicles and (iii) an acceptor protein on the plasma membrane. This assumption is consistent with the structural properties of rabphilin3— that it has at least three domains—and also with the results obtained by the GH overexpression experiment and the squid giant axon experiment described above—that both the N-terminal fragment and the C2 fragment inhibit Ca2+-dependent exocytosis. The Rab3A-dependent interaction of rabphilin3 with the acceptor protein may be followed by the assembly of synaptotagmin and SNARE components. Binding of influxed Ca2+ to rabphilin3, as well as to synaptotagmin, may cause either dissociation from or tighter interactions with their respective interacting proteins and thereby lead to the operation of the NSF/SNAP and SNARE systems. The functional relationships between rabphilin3 and synaptotagmin and between rabphilin3 and the NSF/SNAP and SNARE systems is unknown at present, but rabphilin3 appears to be an important linker for the Rab3 system, the NSF/SNAP and SNARE systems and the Ca2+ systems. Rabin3 A protein different from rabphilin3, which specifically interacts with the GTP-bound form of Rab3A and Rab3D but not with Rab3C, was isolated by the yeast two-hybrid method and named Rabin3 (Brondyk et al. 1995). It has a calculated Mr of about 50 000. Rabin3 has a domain with sequence similarity to Sec2 which is essential for constitutive secretion in budding yeast cells and interacts with Sec4 (Nair et al. 1990). Rabin3 is ubiquitously expressed but particularly abundant in testes. The function of rabin3 remains to be clarified. A possible mechanism for specific localization of Rab3A on synaptic vesicles Immunoelectromicroscopic analysis indicates that both Rab3A and rabphilin3 are uniformly distri-buted in most synaptic vesicles at least in the nerve terminal of motor neurones as described above. These results suggest that rabphilin3 associated with synaptic vesicles is always saturated with the GTP-bound form of Rab3A. When rabphilin3 becomes free of the GTPbound form of Rab3A—after its conversion to the GDP-bound form by the action of Rab3A GAP—it Genes to Cells (1996) 1, 615–632 627 Y Takai et al. may immediately interact with the GTP-bound form of Rab3A which is newly converted from the GDP-bound form complexed with Rab GDI. Rab3A GEP stimulates the dissociation of GDP from Rab3A free from Rab GDI, but not from Rab3A complexed with Rab GDI. Even in the presence of rabphilin3, Rab3A GEP does not act on Rab3A complexed with Rab GDI (our unpublished data). It is likely that another factor, such as Rab3 GDF, may be involved in the activation of Rab3A complexed with Rab GDI. The specific localization of Rab3A could be determined by protein–protein interactions and not only by lipid (from Rab3A)–lipid (from synaptic vesicle membrane) interactions. Rabphilin3 specifically interacts with the GTP-bound form of the Rab3 subfamily members and is specifically localized on synaptic vesicles, it is likely that rabphilin3 determines the specific localization of Rab3A. Rabphilin3 has been shown to inhibit Rab3A GAP activity (Kishida et al. 1993), and the interaction of the lipid moieties of Rab3A with phospholipid inhibits the dissociation of GTP from Rab3A, as described above. Therefore, the interactions of Rab3A with both rabphilin3 and vesicle phospholipid may keep Rab3A in the GTP-bound form until Rab3A accomplishes its function. It is also possible that Rab3A GDF determines the specific localization of Rab3A, if Rab3A GDF is specific for the Rab3 subfamily members and is localized specifically on synaptic vesicles. Important functions of lipid-modifications of Rab3A As described above, the lipid modifications of Rab3A are of crucial importance for its interaction with regulators, including Rab GDI, Rab3A GEP and Rab3A GAP. Moreover, they are essential for the action of each regulator. Of these modifications, the geranylgeranylation, but not carboxylmethylation, is essential for the action of Rab GDI (Musha et al. 1992). It is not known which modification is essential for the actions of Rab3A GEP and Rab3A GAP. It is also not known how these lipid modifications are important for the actions of these regulators. Although the threedimensional structural analysis of Rab GDI has revealed the structure responsible for its interaction with Rab3A, as described above, it has not been determined which structure of Rab GDI distinguishes the lipid-modified form of Rab3A from the lipid-unmodified form. It is possible that the lipid moieties interact directly with the regulators or intramolecularly interact with Rab3A 628 Genes to Cells (1996) 1, 615–632 molecule itself so that it causes a conformational change to interact with the regulators. Moreover, the lipid moieties have been shown to intramolecularly affect the interaction of GTP with Rab3A. Three-dimensional structural analysis by crystallization of the lipid-modified form of Rab3A and the regulators and their cocrystallizations are important for our understanding of the function of the lipid moieties. Conclusions and perspectives Evidence is accumulating that Rab3A and its interacting proteins are involved in Ca2+-dependent exocytosis, particularly in neurotransmitter release. The Rab3A system appears to play an important role as a linker for the NSF/SNAP and SNARE systems and the Ca2+ system. On the basis of the evidence thus far available, we propose a tentative model for the modes of action of Rab3A and its interacting proteins in neurotransmitter release, as shown in Fig. 7. In this model however, there are still several issues to be clarified: (i) how is the GDPbound form of Rab3A staying in the cytosol, complexed with Rab GDI, converted to the GTPbound form and transferred to rabphilin3 on synaptic vesicles?; (ii) what is the anchoring protein of rabphilin3 on synaptic vesicles?; (iii) how does rabphilin3 complexed with the GTP-bound form of Rab3A cause the targeting and/or docking of the vesicles to the presynaptic plasma membrane?; (iv) what is the acceptor protein of rabphilin3 on the presynaptic plasma membrane?; (v) how does Ca2+ control the rabphilin3 and synaptotagmin functions?; (vi) when and how is the GTP-bound form of Rab3A complexed with rabphilin3, converted to the GDP-bound form, and transferred to Rab GDI? The clarifications of these issues will help our understanding of general mechanisms of the Rab family member-regulated vesicle trafficking and also of the mode of action of Ca2+ in Ca2+-dependent exocytosis. 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