PhD THESIS Contribution to the ecology and taxonomy of ixodid ticks in Europe and Africa (SUMMARY OF THE Ph.D. THESIS) Ph.D. Student Gianluca D’Amico Scientific coordinators Associate Prof. Dipl. ECZM Dr. Andrei D. Mihalca Contribution to the ecology and taxonomy of ixodid ticks in Europe and Africa SUMMARY Ticks are obligate hematophagous parasites of the terrestrial vertebrates. Many species are of major interest, their importance residing in their ability to act as vector for numerous species of pathogens infecting animals and humans (Walker et al., 2000). Ticks are part of phylum Arthropoda, class Arachnida. This class includes spiders, scorpions, as well as the order Acari, which comprises several species of mites and ticks. Within the Acari, the suborder Ixodida consists in three families of ticks: Argasidae, Nuttalliellidae and Ixodidae (Walker et al., 2000). Within the Ixodidae family, genus Rhipicephalus is one of the most well represented, including 74 recognized species. Rhipicephalus is mainly an African origin genus, with only ten species known exclusively outside the Afrotropical regions. However, of all species, R. sanguineus is the most widely distributed (Walker et al., 2000). The contemporary concept regarding the R. sanguineus group has been initiated by Feldman-Muhsam (1952), Hoogstraal (1956), Morel and Vassiliades (1963) and Filippova (1997), based on the pioneer ideas of Russian authors, such as Pomerantzev. The taxonomic position of the R. sanguineus group of ticks is still under debate. The biosystematics status of these species is difficult to determine, especially by morphology, because the phenotypical methods are not sufficient to differentiate all members of the group (Oliveira et al., 2005). The domestic dog is the typical host for R. sanguineus, both in rural and urban areas (Szabó et al. 2001; Dantas-Torres et al., 2004; Dantas-Torres et al. 2009). Occasionally, it may infest a large variety of domestic or wild animals, such as cats, rodents, birds and humans. R. sanguineus ticks may act as vectors and reservoirs for certain pathogens (e.g. Rickettsia conorii, Ehrlichia canis, Babesia vogeli, Anaplasma platys, etc.) (Dantas-Torres, 2007). The role of R. sanguineus ticks in transmission of pathogens to humans is well documented, despite their low anthropophilia (Palmas et al., 2001). They are known vectors of Rickettsia rickettsii, the agent of Rocky Mountains Spotted Fever in the USA (Demma et al., 2005). In the Mediterranean regions, R. sanguineus are vectors and reservoirs of Rickettsia conorii, agent of Mediterranean Spotted Fever (Matsumoto et al., 2005). Rhipicephalus rossicus species is included in the R. sanguineus group. First description was done after collection from hedgehogs and rats in the Russia. In 1928, Olenev reported this species as similar to R. sanguineus. In 1939, Zumpt suggested that it is a subspecies of R. sanguineus (R. sanguineus rossicus). In 1956, Shatas described the immature stages (Mihalca et al., 2015). During 1920–1930, different Russian authors divided R. sanguineus group into different branches: the ‘sanguineus branch’ and the ‘rossicus branch’ (Morel and Vassiliades, 1963; Saratsiotis, 1981). Nowadays, R. rossicus is considered a valid tick species (Kolonin, 2009; Guglielmone et al., 2010; Mihalca et al., 2015). However, in the last several past years, due to its close morphological similarities, it is likely that R. rossicus has been misidentified as R. I Gianluca D’Amico sanguineus, especially in areas where their distribution overlap (Kolomietz, 1936; Dumitrache et al., 2014; Mihalca et al., 2015). R. rossicus was reported in Eurasian steppe regions, (e.g. Armenia, Bulgaria, Romania, Ukraine, Uzbekistan, Azerbaijan, China, Dagestan, Egypt, Georgia, Iran, Israel, Kazakhstan, Tajikistan, Moldavia, Poland, Russia and Turkey) (Mihalca et al., 2015). The vectorial importance of R. rossicus may be significantly higher than is currently recognized, and should be deeply investigated (Mihalca et al., 2015). Ticks of the genus Ixodes are worldwide distributed and have a vectorial role for several important zoonoses. The morphological characteristics used for identification are often ambiguous, and they can only be used for determination of adults. Molecular tools (DNA sequences) and morphological redescriptions offer an important insight for better understanding the specific vectorial role of each species (Caporale et al., 1995). There is a gap in information regarding the ticks of genus Ixodes in Africa. Other than descriptions of some stages for most of the species, as available by Arthur (1965) and additional records provided by Morel (1966), and Elbl and Anastos (1966), most data regarding distribution, ecology, host preferences, medical implications and molecular phylogenies, are missing. This is the case of I. aulacodi described originally by Arthur (1956). To date more than 700 different hard tick species have been described worldwide (Guglielmone et al. 2014), and more than 60 Ixodid species can be found in Europe. Wild animals play a major role in the eco-epidemiology of tick-borne diseases, as they may act as reservoir or amplifying host for different pathogens (Lorusso et al., 2011). Different economic and ecological factors, as changing of the agricultural practices or environmental changes, lead to a broader distribution area of the wild hosts and vectors, facilitating the transfer of pathogens between wild and domestic animals (Bengis et al., 2004). Among wildlife, the wild carnivores are difficult to monitor and capture (Gese, 2001), reason why tick-host associations are hard to be identified. In Romania studies regarding wildlife-ticks distribution are scarce and dated. The morphological identification of ticks is not a trivial issue as some species form species-complexes with cryptic of sibling species, i.e. R. sanguineus group (Dantas-Torres et al. 2013). Even in a thoroughly surveyed area like Europe, new species have been recently described (i.e. I. inopinatus or I. ariadnae). Moreover, morphological keys for ticks commonly cover only the species with medical interest, not every stages being included. The use of adequate genetic markers will always be based on the use of reference specimens for which morphological species-specific identification have been correctly conducted (Nava et al., 2009; Araya-Ancheta et al., 2015). Blind tests are often applied for the unbiased identification of organisms, in order to compare the degree of similarity between the opinion of several specialists about the morphology and classification of organisms, and to try to overcome misidentifications. II Contribution to the ecology and taxonomy of ixodid ticks in Europe and Africa The main objectives of this Phd thesis were: To evaluate the community structure of ticks in Africa (Lake Turkana region), in order to provide an insight into the ecology and seasonality of ticks collected in localities with an extreme range of ecological conditions. To identify the most dominant tick species in dogs in Romania (Danube Delta) in order to assess the possible emergence of associated pathogens. To assess the tick communities parasitizing on dogs and to provide new data regarding seasonal dynamics of a neglected, but widely distributed steppe tick, Rhipicephalus rossicus in a locality of Danube Delta Biosphere Reserve. To identify tick species collected from hunted or road-killed wild carnivores in order to complement and confirm the sparse information currently available and to establish reliable data on tick-host associations. To identify the diversity of tick species found the subcutaneous tissues of red foxes (Vulpes Vulpes), and to describe the lesions for understanding the mechanism of subcutaneous localization. To describe the male and redescribe the female of Ixodes aulacodi tick species and to provide the 16S rDNA sequence for this species. To test the reliability of a blind test of morphological identification of ticks reported in Europe and Northern Africa, by several teams of European experts and to compare their identification skills; to estimate the rate of confidence of the participants with their identifications as compared with the rate of mismatches, a ratio that express how efficiently the experts can manage the threat derived by ticks; to evaluate the reliability and usability of a new comprehensive key for all European ticks before its final publication as a book. The reaserch included in this PhD thesis was coordinated by the University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca, Faculty of Veterinary Medicine, Department on Parasitology and Parasitic Diseases, in collaboration with other European Universities and different specialized laboratories, between 2012 and 2016. This PhD thesis is structured in two main parts: literature review containing one chapter and original reaserch containing seven chapters. The length of the thesis is 149 pages, including a number of 9 tables, 17 figures and 360 references. The first part (literature review), includes Chapter I.1, describing the general charateristics of ixodid ticks. The second part (original research) includes the main objectives of the PhD thesis, followed by chapters II.1-II.7 including the original research. The general conclusions and recommendations are included in Chapter II.8 and the originality and innovative contributions in Chapter II.9. III Gianluca D’Amico In Chapter II.1, we evaluated the community structure of ticks in Africa (Lake Turkana region); in addition, it was assessed the ecology and seasonality of ticks collected in localities with an extreme range of ecological conditions: from hot desert to mist afromontane forest. Our research was based on a long-term screening of ticks parasitising the domestic dogs living with indigenous people around Lake Turkana, Mt. Kulal and Mt. Nyiru areas, Northern Kenya. A total of 9977 ticks were collected from 1464 dogs of all ages and both sexes. Identification was performed using morphological keys and data were analyzed using the Repeated Measures ANOVA, post-hoc Scheffe test and F test, relating independent variables as seasons and regions. Final results were translated to maps using GIS software (D’Amico et al., 2015). Five species of ticks were identified: Rhipicephalus pulchellus, Rhipicephalus sanguineus sensu lato (s.l.), Rhipicephalus armatus, Amblyomma gemma and Hyalomma truncatum. Our results suggest a statistical difference of the tick community structure related to seasonal and altitudinal distribution. Parasitism with R. armatus and R. pulchellus was higher in September-October than in January, whereas, R. sanguineus s.l. was not influenced by the season. Rhipicephalus armatus was present exclusively on dogs living in semi-desert areas, while R. sanguineus s.l. was the dominant species present on the shores of Lake Turkana. Although R. pulchellus was present in the all studied areas, this species had a significantly higher abundance in the afromontane region of Mt. Kulal and montane xeromorphic forest of Mt. Nyiru; these regions are characterized by elevated humidity and cooler climate. Similar geo-climatic distribution is typical also for A. gemma, which was found in dogs exclusively in Mt. Kulal afromontane area. The current work represents the most extensive study performed on the tick community structure of dogs in Eastern Africa. The results showed a relatively limited tick species diversity, with clear seasonal differences and altitudinal distribution (D’Amico et al., 2015). Chapter II.2 presents data which highlight the dominance of Rhipicephalus rossicus in dogs from Romania, with importance for the possible emergence of associated pathogens. Changes in the distribution of tick species are among the major causes for the increase in prevalence of zoonotic diseases worldwide, twith tick-borne diseases’ prevalence showing an emerging pattern. One of these ticks, R. rossicus, which is reported occasionally from humans, seems to be particularly interesting because of its demonstrated vectorial role for zoonotic pathogens like Francisella tularensis, Coxiella burnetii, or CCHF and West Nile viruses (Sándor et al., 2014). Here we report a case of dominant occurrence of R. rossicus on household dogs in the wetlands of Eastern Europe (Romania). Ticks were collected from dogs in 5 distinct locations, with 1068 ticks of 6 species found. R. rossicus had a dominant occurrence in dogs in all but one location, accounting for 87.1% of all ticks (32.3–95.3% in different locations). Until this study, R. sanguineus was considered as the only important tick species on dogs in south-temperate regions of Europe, as well in Romania. The dominant presence of R. rossicus IV Contribution to the ecology and taxonomy of ixodid ticks in Europe and Africa in dogs, its vectorial competence and broad host spectrum (including humans), make this tick species an important candidate for further analysis and highlight the paucity of our knowledge on disease vectors in this region of Europe (Sándor et al., 2014). Chapter II.3 shows the seasonal dynamics of Rhipicephalus rossicus attacking domestic dogs from the steppic region of southeastern Romania. Danube Delta Biosphere Reserve is one of the most interesting regions in Europe from an epidemiological point of view due to its great biodiversity, local climatic conditions and various types of habitats. Moreover, there is no data regarding the ectoparasite communities of dogs from this area. In this frame, the aims of our study were to establish the tick communities parasitizing dogs and to provide new data regarding seasonal dynamics of a neglected tick species, R. rossicus (Dumitrache et al., 2014). A survey was carried out in order to gather information regarding tick species attaching to domestic dogs from a steppic region of southeastern Romania and to establish their seasonal dynamics. The research was conducted from 1 December 2012 to 30 November 2013, on 8 dogs from Iazurile, a locality from the west-central part of the Danube Delta Biosphere Reserve. In total, 384 examinations were made, each dog being checked for tick infestation 4 times per month, for one year. The 893 ticks found belonged to six species: R. rossicus (95.6%), Dermacentor reticulatus (3.2%), Ixodes ricinus (0.5%), Hyalomma marginatum (0.3%), R. sanguineus sensu lato (s.l.) (0.2%) and I. crenulatus (0.1%). From the 91 positive examinations, R. rossicus was found in 80 (87.9%). Single species infestation occurred in 84 examinations. In 7 out of 91 positive examinations mixed infestation were found. No ticks were found in December, January and September. For R. rossicus, high frequency and intensity were observed in May, June and July. The activity peaks for D. reticulatus were in spring and autumn. Our results highlight that within the range of R. sanguineus s.l., the most common dog tick worldwide, selected dog populations may be predominantly infested by closely related species, like in our case, R. rossicus (Dumitrache et al., 2014). Chapter II.4 provides new data regarding hard-tick diversity and tick-host associations in wildlife in Romania. This study aim was to identify tick species in wild carnivores and to establish reliable data on tick-host association The study was conducted in different Romanian localities from all 5 ecoregions found in the country. Fourteen species of wild carnivores were examined. Immature and adult ticks were collected and identified using the morphological keys. The frequency and mean intensity of ticks, overall and differentiated by species, developmental stage and hosts were calculated. Of 202 wild carnivores, 68 were parasitized by ticks. The mean intensity of tick infestation was similar in males (6.97, BCa 95% CI: 5.15-9.88) and females (5.76, BCa 95% CI: 4.15-9.17). The highest prevalence of infested animals was recorded in panonian and steppic ecoregions, 66.7% and 52.7%, respectively. In continental regions the prevalence was 26.7%, while in pontic ecoregion was 28%. The lowest value, 16.7% was recorded in the alpine biogeographical region. V Gianluca D’Amico A total number of 430 ticks were collected, and 24.8% of the animals were infested with more than one tick species. 14 new tick-host association were recorded. Our results suggest that antrophogenic changes of the environment lead to the diminishing of the boundaries, between wild and domestic animals, increasing the exposure for both animals and humans, to infective agents, including tick-borne pathogens. Chapter II.5 describes unsual findings observed during an extensive survey of parasites in red foxes (Vulpes vulpes) that was conducted in the Czech Republic. Carcasses were examined by necropsy, and occasionally small, dark nodules apparently containing ticks were observed in the subcutaneous tissue of several foxes. A similar finding was observed in a red fox in Romania. Histopathological examination was performed using hematoxylin and eosin staining. Of the 91 foxes examined from the Czech Republic, 14 (15.4 %) were harboring ticks in the subcutaneous tissue. In the majority of these cases, 1 to 3 nodules/fox were found, with a maximum of 31 nodules/fox. In the Romanian fox were also identified subcutaneous ticks. All ticks collected from subcutaneous tissue were partially engorged adults. Based on morphological features, Ixodes ricinus, I. hexagonus, I. crenulatus and Dermacentor reticulatus were identified. The histopathological examination revealed chronic granulomatous panniculitis with peripheral fibrosis and intralesional presence of the ticks. Only few data are available regarding ticks localized in the subcutaneous tissue of any host. All the ticks were dead or already decomposed and it is evident that subcutaneous location does not represent an evolutionary advantage, as the detachment and finishing the life cycle is impossible. Chapter II.6 reports the description of the male, redescription of the female and 16S rDNA sequence of Ixodes aulacodi Arthur, 1956 (Ixodidae). This tick species is a poorly known species that has been recorded predominantly in the wet countries of western and central Africa, mainly associated to the greater cane rat Thryonomys swinderianus (Temmink). We redescribed the female, described the male (ascribed to the species from specimens found in copula) and provide the 16S rDNA sequence. We also provide complete illustrations of the adults based on specimens found on greater cane rats in Ivory Coast. I. aulacodi is included in the group of species of the subgenus Afrixodes that have horseshoe shaped anal groove, and which lack auriculae and cornua. The female is easily separated when compared with other species because of a unique combination of characters: All the coxae have internal spurs, coxa II has two external spurs, syncoxae are absent, and trochanters I-III have one spur each. The male has a notched hypostome and lacks syncoxae, auriculae and cornua (Chiţimia-Dobler et al., 2016). Given the importance of tick identification for public health, the last chapter (II.7) reports the results of a blind test of ixodid tick identification by European experts. The most prevalent tick species in Western Europe and Northern Africa were included in the study. A total of 15 laboratories were voluntarily enrolled in the test. Each VI Contribution to the ecology and taxonomy of ixodid ticks in Europe and Africa participant received between 22 and 25 specimens of adult ticks of the species Dermacentor marginatus, D. reticulatus, Haemaphysalis punctata, Ixodes ricinus, I. hexagonus, Hyalomma lusitanicum, H. marginatum, Rhipicephalus annulatus, R. bursa, R. sanguineus s.l., and/or R. rossicus, which were randomly selected and blindly distributed among the participants together with a questionnaire. Only specimens collected while questing and, if possible, in the same survey, were circulated. Because of the random nature of the test, a participant could receive several specimens of the same species. Ticks were morphologically identified by three of the co-authors and identification confirmed by a fourth co-author who used molecular methods based on several genes. Species in the different genera had variable misidentification rates (MR) of 7% (Dermacentor), 19% (Haemaphysalis), 36% (Hyalomma) 14% (Ixodes), and 54% (Rhipicephalus). Within genera, the MR was also variable ranging from 5.4% for I. ricinus or 7.4% for D. marginatus or D. reticulatus to 100% for R. rossicus. The test provided a total misidentification rate of 29% of the species of ticks. There are no significant differences in MR according to the sex of the tick. Participants were requested to perform a second round of identifications on the same set of ticks, using only purposely prepared keys (without illustrations), circulated to the enrolled participants, with details on 2 species of the genus Dermacentor, 8 of Haemaphysalis, 10 of Hyalomma, 23 of Ixodes, and 6 of Rhipicephalus. The average MR in the second round was 28%: 0% (Dermacentor), 33% (Haemaphysalis), 30% (Hyalomma) 18% (Ixodes), and 50% (Rhipicephalus). Species which are non-endemic in the countries of the participating laboratories had always highest MR, i.e. purely Mediterranean species had highest MR by laboratories in Central and Northern Europe. Participants expressed their concerns about a correct identification for almost the 50% of the ticks of the genera Hyalomma and Rhipicephalus. Interestingly, participants expressed a total confidence in the identification of the 100% of erroneously identified Ixodes spp. The results show a lack of adequate knowledge of the identity of the most prominent species of ticks in the Western Palearctic, and underpin the need of adequate reference libraries for specialists involved in the identification of ticks. Results also showed that an adequate combination of several genes may adequately identify the target species of ticks. The general conclusions were: Analysis of the tick community structure of dogs in Eastern Africa showed a relatively limited tick species diversity, with a clear seasonal and altitudinal distribution. The dominant species in the afromontane region was R. pulchellus, while in the desert areas, the dominant species was R. sanguineus s.l.. Analysis of tick community structure in dogs in the Eurasian steppic region of Danube Delta showed that the ticks collected from different dog populations VII Gianluca D’Amico were predominately R. rossicus, a tick species closely related to R. sanguineus s.l.. As the vectorial role of R. rossicus for important canine pathogens has not been evaluated yet, our results highlight the importance of a correct identification in order to overcome possible emergence diseases. The dominant presence of R. rossicus in dogs in Danube Delta, its vectorial competence and broad host spectrum (including humans), make this tick species an important candidate for further analysis and highlight the paucity of our knowledge on disease vectors in this region of Europe. Our study of ticks species parasitizing wild carnivores in Romania suggest that biotic homogenization leads to different changes on pathogens ecology and distribution, and to an increased exposure of both animals and humans, to infective agents, including tick-borne pathogens. These findings highlight the imperative need of surveillance of disease that may be transmitted by wild carnivores, especially in areas where they are limited or absent. Occurrence of subcutaneous ticks in red foxes (Vulpes vulpes) may be the result of different factors contribution (deep embedment, long feeding time and increased reactivity of fox skin). It is hard to assume that this location represents an evolutionary advantage as their detachment and finishing the life cycle is impossible. Description of the male, re-description of the female, and providing the 16S rDNA sequence of Ixodes aulacodi complete the existing information of this representative tick species of the subgenus Afrixodes. 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