WJM World Journal of Microbiology Vol. 2(2), pp. 026-032, September, 2015. © www.premierpublishers.org, ISSN: 2141-5032x Research Article Studies on cellulose degrading microorganisms associated with rumen of ruminant animals Sambo Sadiya1* and Salau A Ibrahim2 1*,2 Department of Biology, Shehu Shagari College of Education, Sokoto, Nigeria Studies on cellulose degrading microorganisms associated with rumen of ruminants was carried out from ruminants (ram, cow, and goat), through culture, microscopic identification, Biochemical test and cellulose degrading methods. In the rumen content of ram four bacteria were isolated Bacteriodes and Staphylococcus had the highest percentage (33.3%) each while Veillonella and Bacillus had 16.6% each. Seven bacteria were isolated from cow with Streptococcus having (22.2%) Staphylococcus (22.2%), while Bacteroides, Yersinia, Peptococcus, Nesseria and Bacillus had equal distribution. Goat had eight bacteria including Bacteroides, Clostridium, Yersinia, Staphylococcus, Homofermentative Lactobacillus Alcaligens and Bacillus all of which had equal distribution. Bacteroides and Bacillus are common in all rumens, with Bacteroides, being more prevalent in the ram. study revealed that ruminants harbors various organisms that are active cellulose degraders, out of which Bacteroides specie grow best on cellulose agar. For fungi, Aspergillus flavus and Aspergillus fumigatus highly degrades cellulose, Scopulariopsis candida degrades minimally. The study revealed that ruminants harbors various organisms that are active cellulose degraders, out of which Bacteroides specie grow best on cellulose agar. Therefore, Rumen should be used as a site for isolation of micro organisms capable of cellulose hydrolysis in order to reduce the coast of purchasing commercial enzymes Key words: Ruminant, degrading, bacteria, fungi and cellulose. INTRODUCTION A ruminant from a physiological point of view is any artiodactyl mammal that digests it's food in two steps, first by eating the raw material and regurgitating a semidigested form known as cud from within their first stomach, known as the rumen. The process of chewing the cud to break down the plant matter and stimulate digestion is called ruminating (Vankessel et al., 2002). are present in contents this consist of bacteria, protozoa and fungi. Bacteria require warm moist free range of 38 to 42 degree Celsius. In the rumen digestion of cellulose and other polysaccharides occur through as hollow muscular organ which develop anatomically in size, structure and microbial activity as the ruminant diet is changed. By physiology, the rumen is regarded as fermentation vat that can hold 160 to 240 liters of material providing an anaerobic environment, constant temperature and pH, and it is the site of microbial activity. An estimated 150 billion microorganisms per teaspoon *Corresponding author: Department of Biology, Shehu Shagari College of Education, Sokoto, Nigeria. Email: [email protected], Tel: +2348064535420 Studies on cellulose degrading microorganisms associated with rumen of ruminant animals Sambo and Salau 026 For example in calf the rumen gets enlarged when the diet is changed from liquid milk to diary feed or silage. Unique features of the rumen as site of cellulose digestion are its relatively large size and it's position in the alimentary tract as the organ where ingested food goes (Lynd et al, 2002). Field et al., (2000) added that the rumen is an anaerobic ecosystem colonized by an extremely dense microflora and microfauna, these populations are composed of a grand variety of bacterial and protozoa species. The different hydrolytic, fermentative and methanogenic activities of these populations ensure the efficient degradation of cell wall constituents in forages. The omasum is sometimes referred to as the "many piles" because of its many layers of muscular tissue. In the omasum, the particle size of digesta is reduced and any excess water is removed before the digesta enters the abomasums, the omasum can contain up to 16 liters of digesta. In the abomasums or "truestomach" acids and enzymes further digest the ruminant's digesta. It is the first true granular portion of the gastromtestinal tract where the stomach walls secrete enzymes. This stomach compartment can hold approximately 20 liters of material. The hydrochloric acid production which converts pepsinogen to pepsin, which breaks down protein to shorter molecular chains compounds such as peptides and amino acids for further digestion and absorption in the small intestine. As digesta passes through the small intestine the pH increase at relatively slow rate. Bile salts which are synthesized by the liver from chlolesterol, and in maintaining this alkaline pH in the small intestine (Ellis et al, 2005). Bacteria are the numerous of the rumen inhabitants and numbers up to 100 million cells per milliliter of fluid. There are 60-100 species regarded as normal flora inhabitants and although each species can only undertake a few specific tasks, the bacteria as a whole are capable of degrading all the constituents of a plants based diet (Bhat, 2000). There is overlap between functions of different species; some species are highly versatile in function, while others are more specialized. End products of the action of some species are further metabolized by other species and are therefore intermediates and product of the mixed population (Morgavi et al, 2001). Fungi are well known agents of decomposition of organic matter in general, and of cellulosic substrate in particular Wang et al., (2001). The primitive group of fungi, the anaerobic Chytridomyces are well for the ability to degrade cellulose in the gastro intestinal tracts of ruminant animals, although taxonomy of this group remain controversial, members of the order Neocallimastigates have been classified based on the morphology of their motile zoosphores and vegetative thalli, they include the Neocallimastigates, piromyces and Caeccomyces (Lynd et al., 2002). Cellulolytic capability is also well represented among the remaining subdivisions of aerobic fungi, within the 700 species of zygomycetes only certain members of the genus. Mucor have been shown to posse significant cellulolytic activity. Other division such as Ascomycetes member of the general e.g Bulgarria, Chactomium and Helotium; members of the division Deutromycetes e.g those of the genera Poria, Aspergillus, Cladosporium, Fusarium, Greotichum, Penicillium and Trichoderma have cellulolytic enzymes (Masoni et al., 2007). MATERIALS AND METHODS Sample collection A portion of the rumen of each animal (ram, cow, and goat) were cut with content of digested food immediately they were slaughtered and taken to the microbiology research laboratory Usmanu Danfodio University Sokoto for further analysis. Nutrient agar saboraud dextrose agar (SDA), cellulose agar, starch agar and solid standard medium. Preparation of Media One hundred grams of plane agar and 3.0 grams of starch were dissolved in 1000ml of distilled water. The mixture was autoclaved at 121ºc for 15 minutes and allowed to cool for 45ºc before dispensing 20cm³ portions into sterile petridish appropriately labeled for the test organism. The plates were aseptically inoculated with the test organism by streaking across the surface of the medium; the plates were then incubated at 37ºc for 3-5 days: At the end of the incubation, the plates were flooded with lugol’s iodine. Hydrolysis of starch was indicated by clear zone around the colonies of the organisms which appeared whites and the organism blue-black for positive test while for a negative result both the surrounding and the colony gave a blue-black coloration, 0.5g of yeast extract, 20g of glucose, 20g of Agar were dissolved in 1 litre of distilled water, and heated to dissolve completely. pH maintained at 6.8, medium was treated with actidione (cyclohexane) to o inhibit yeast growth before autoclaving at 121 c for 15 minutes (Obire, 2005; Schwarz, 2001). Isolation and Identification The samples from the cut rumen of ram, cow and Studies on cellulose degrading microorganisms associated with rumen of ruminant animals World J. Microbiol. goat were label AR, BC and CG respectively Using different sterile syringes 1ml of the liquid content from each rumen were serially diluted by placing in test tube containing 9ml distilled water. From the first tube, another 1ml was put to test tube 2, this was repeated through to test tube 6. Bacteria and fungi were isolated from the samples by th th plate method, inoculating 0.1ml of the 4 and 6 dilution factor of the serially diluted digested food from AR, BC and CG on to nutrient agar for the isolation of bacteria, and SDA for the isolation of fungi. The nutrient agar 0 plates were incubated at 37 c for 24hrs (aerobically and anaerobically) while SDA plates were incubated at room 0 temperature (28 ± 2 c) for 72hrs (Oyeleke and Okusanmi, 2008) colonies that developed on the plates were used to obtained a pure culture which was maintained on agar slants. The pure isolates were subculture on to cellulose agar plates and were incubated aerobically and anaerobically for 7 days. Filter paper was use as source of cellulose; to formulate cellulose agar; agar was o prepared and sterilized at 121 c for 15min, filter paper was also sterilized in hot air oven. After cooling the plane agar was dispensed in the petridishes and 1 filter paper was placed in each petridish and was left until the media had solidified (Lee and Don, 1997). The plates were labeled appropriately and each was aseptically inoculated with the test organism and incubated at room temperature for 7 days, aerobically and anaerobically. (Organisms with the ability to grow on the surface of the filter paper were cellulose hydrolyzing bacteria fungi) Such organisms were sub cultured again. Identification of the bacterial isolates was based on cell morphology gram staining, biochemical tests (motility citrate, in dole, catalase, coagulase, oxidase, MR, VP, carbohydrate fermentation tests, starch hydrolysis and cellulose hydrolysis tests as described in item 3.4.1 and 3.4.2. While the identification of fungal isolates was by microscopic and macroscopic techniques which comprises of pigmentation, colour of aerial shape and kind of asexual spore presence of special structures such as foot cell, sporangiophore or conidiophores and the characteristics of spore. Identification was described by Oyeleke and Manga (2008) and also Okusanmi (2008). The identified organisms were maintained on agar slants. A smear was prepared by placing a drop of normal saline on a clean slide, wire loop was heated until red hot and used to pick the growth and placed on the slide. The smear was heat fixed by passing the slide over flame. The smear was covered with crystal violet for one minute and washed with distilled water. This was followed by covering the smear with lugol’s iodine solution for one minute. The smear was washed with distilled water and then decolorized with acetone for 30 seconds. It was further washed off with distilled water and the smear was 027 flooded with saffranin for 1 minute after which it was washed with distilled water and allowed to dry. A drop of immersion oil was placed on dried slides and the slides were viewed under microscope using x100 objectives. Biochemical Test The confirmatory biochemical test described by Oyeleke and Manga (2008) and Okusanmi (2008) were carried out on the isolates as follows: The motility medium contains low concentration of agar (0.2 – 5%) and motile organisms are able to move from the line of inoculation through the sloppy agar. The organisms were inoculated by making a fine stab with needle to a depth of 1-2 cm short of the bottom of the o tube. The organisms were incubated at 35 C for 24 – 48 hours. The line of inoculation was not sharply defined and the rest of the medium was cloudy in positive test. In negative result the line of inoculation became sharply defined. Methyl red test Ten milliliters of MR-Vp medium in a test tube was inoculated with the test organism and incubated at 35ºc for 48 hours, five drops of methyl red indicator solution was added. The appearances of a red color indicated a positive result. While yellow indicated negative Voges – proscauer test Five milliliters of MR – Vp medium was inoculated with the test organisms and incubated at 35ºc for 48 hours. Then 0.6 ml of alpha naphthol solution and 0.2 milliliter of 40% potassium hydroxide solution were added to the mixture. It was kept for 3 hours and observed. The development of a red color indicated positive result. Absence of red colour indicated negative result. Citrate utilization test The isolates were inoculated in a simmon’s citrate agar slants and incubated at 37ºc for 72 hours, the development of a blue color indicated positive result, i.e citrate was utilized but the presence of the original green colour indicated a negative result i.e citrate was not utilized. Indole test The isolates were inoculated in a pepton water medium and incubated at 37ºc for 24 hours. After the Studies on cellulose degrading microorganisms associated with rumen of ruminant animals Sambo and Salau 028 incubation period, a drops of kovac’s reagents was added, the appearance of a red color indicated positive result. Catalase test A drop of H2O2 was placed on a sterile glass slide and a colony of the test organisms emulsified by mixing it with the H2O2 using a glass rod positive test was indicated by bubbling and frothing, the absence of bubbling indicated negative test. Urease test The isolates were inoculated in a urease agar and incubated at 30ºc for 48 hours the development of red – pink color indicated positive result. Coagulase test Two drops of physiological saline were placed on a sterile glass slide and a colony of the test organism was emulsified in it. A loop full of human plasma was added to the mixture and mixed thoroughly. The slide was held and titled back and forth for a minute. A positive test was indicated by clumping of the mixture. H2S, gas production, glucose and lactoce The test organism was inoculated into already prepared tubes of triple sugar iron agar and Incubated at 37ºc for 48 hours. After the incubation period the tubes were observed for H2S production (black coloration) gas production was indicated by (crack media, air bubbles, or media protrude), glucose positive gave rise to a yellow coloration at the booth of the test tube. While lactose positive gave a redish coloration of the slant Oxidase test A piece of filter paper was placed in a sterile petridish and 2 drops of freshly prepared oxidase reagent was added. A colony of the test organisms was smeared on the filter paper. The development of blue-purple color within few seconds indicated a positive result. Absence of blue purple colour indicated negative result. RESULTS AND DISCUSSION Eleven bacterial species i.e Bacteroides, Streptococcus, Staphylococcus, Bacillus, Alkalegenes, Nesseria, Peptococcus, Lactobacillus, Veillonella, Clostridium and Yersinia were isolated from the rumen contents of ruminants with Bateroides spp common to all animals, Morphological and biochemical characteristics were used to identify the organisms see table 1. Four fungal species namely Aspergillus flavus, Aspergillus fumigatus, Scopulariopsis candida, and Candida guilliermondii were also isolated from the rumen of all animals. Macroscopic and microscopic characteristics were used to identify the isolate as summarized in table 2 Figure 1 show the percentage occurrence of bacterial isolates in the rumen of ram, cow and goat respectively, and also the overall percentage occurrence of bacterial isolates in the rumen of the ruminants. Bacteroides and Staphylococcus spp had the highest percentage of occurrence in ram of 33.3% each. Other species i.e Bacillus and Veillonella had 16.6% each. In cow Streptococcus and staphylococcus were the dominants (22.2%), while other species i.e Bacillus, Neserria, Peptococcus, Yesinia and Bacteroides had uniform distribution of (11.1%) each. In goat all the species isolated had equal distribution i.e (12.5%), and goat rumen had the highest number of species including Bacillus, Lactobacillus, Staphylococcus, Alcaligenes, Yesinia, Clostridium, Veilonella and Bacteroides. On the overall Staphylococcus had the highest percentage of 21.7% followed by Bacteroides species with 17.3% while Streptococcus, Veilonella and Yesinia species had 8.69% each. Alcaligenes, Yesinia and Clostridium Peptococcus and Lactobacillus had the least percentage of 4.3% each. Bacteroides species had the highest growth on cellulose agar which were present in both ram, cow and goat ruminal contents. Followed by Streptococcus found in cow which had a moderate growth. Peptococcus spp and Clostridium also had a moderate growth on cellulose agar. Alcalegenes species and Nesseria had the least growth while Bacillus and Veilonella had no growth (Table 3). However figure 2 indicted the percentage of fungal isolate in the rumen of ram, cow and goat whereby in ram A. flavus was not isolated, A. fumigatus recorded 25% and Scopulariopsis Candida was dominants with 62.5% Candida guilliermondii had 12.5%. In the rumen of cow the most dominant fungus is A. fumigatus with 87.5%, A. flavus 8.3% while S. Candida had the least percentage 4.2%. However, C. guilliermondii was not isolated. Also in the rumen of goat A. fumigatus had the highest percentage 46% A. flavus and C. guilliermondii had 23% each while S. candida had 8%. In the three ruminants the most prevalent are A. fumigatus with 64%, followed by S. candida 16% A. flavus 11% and C. guiliermondii (9%). For the fungal isolate, Aspergillus flavus and Aspergillus fumigatus had the maximum cellulose degrading capability Scopulariopsis candida had the least Studies on cellulose degrading microorganisms associated with rumen of ruminant animals World J. Microbiol. 029 Table 1. Summary of morphological and biochemical characteristics of bacteria isolates from the rumen of ruminants. Sample Gram Reaction MOT MR VP CIT IND CAT URE COA H2S GAS GLU LAC MAN OX AR3 AR2 BC1 BC4 BC1 BC2 BC3 CG5 BC2 AR1 BC4 CG1 CG3 CG4 AR4 BC3 CG3 CG2 CG6 AR2 AR3 BC5 CG4 G+cocci G+cocci G+cocci G+cocci G+cocci G+cocci G+coocci G+cocci G-cocci G-cocci G-shortrods G-shortrods G-cocci G+rod G+rod G+rod G+rod G+rod G-rod G-rod G-rod G-rod G-rod -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve -ve -ve -ve +ve +ve +ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve +ve +ve -ve +ve -ve +ve -ve -ve -ve +ve -ve -ve +ve +ve +ve +ve -ve -ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve -ve +ve +ve -ve -ve +ve -ve -ve +ve +ve -ve +ve +ve -ve -ve -ve -ve +ve -ve -ve -ve -ve -ve +ve +ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve +ve +ve +ve -ve -ve -ve +ve +ve +ve -ve -ve +ve +ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve +ve +ve +ve -ve -ve +ve -ve -ve -ve -ve +ve +ve -ve -ve +ve +ve -ve +ve -ve +ve +ve +ve +ve +ve -ve ve -ve -ve +ve -ve +ve -ve -ve -ve -ve -ve -ve +ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve +ve +ve -ve +ve -ve -ve -ve -ve -ve +ve +ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve -ve +ve +ve -ve +ve -ve -ve +ve +ve +ve +ve +ve +ve +ve -ve +ve +ve -ve +ve -ve -ve -ve -ve -ve +ve +ve +ve +ve +ve +ve -ve -ve -ve -ve +ve -ve -ve -ve -ve -ve -ve -ve +ve +ve +ve -ve -ve +ve +ve -ve +ve +ve +ve +ve +ve -ve -ve -ve -ve +ve -ve +ve -ve -ve -ve -ve -ve -ve -ve -ve +ve +ve +ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve -ve growth but Candida guilliermondii showed no growth on cellulose agar (Table 4) Bacteria was found to be the most predominant, because eleven bacterial species were isolated from the ruminants (ram, cow, and goat) out of which nine were found to hydrolysed cellulose (Table 4). This agrees with findings of Bhat (2000) that, bacteria are the most numerous of the rumen inhabitants, there are 60 – 100 species regarded as normal flora and although each species can only undertake a few specific tasks, the bacteria +ve -ve -ve -ve -ve Starch Hydro -ve +ve -ve +ve +ve +ve -ve -ve -ve +ve +ve -ve -ve +ve +ve +ve -ve -ve +ve -ve +ve +ve +ve Cellulose Hydrol. Identification -ve +ve +ve +ve -ve -ve -ve -ve +ve -ve +ve +ve -ve +ve -ve +ve -ve +ve +ve +ve -ve +ve +ve S. areus S .arlettae Strep-fae calis Strep spp Peptococcus spp Staph inter- medius Staph spp Staph spp N. haemolysans Veillonella spp Yersinia enterocolitica yersinia intermedia Vellonela spp H. lacto bacillillus B. lentus Bacillus spp B. panto- ther ticus clostridium histolyticun alkaligenes spp Bacteroides convexus Bacteroides convexus Bacteroides succinogene Bacteroide ovat as a whole are capable of degrading all the constituents of plant based diet. Figure 1 indicated the percentage of occurrence of each specie isolated in ram, cow and goat respectively, in the ruminal content of ram four bacterial specie were isolated Bacteriodes and Staphylococcus had the highest percentage had Studies on cellulose degrading microorganisms associated with rumen of ruminant animals Sambo and Salau 030 Table 2. Summary of morphological characteristic of fungi from the rumen of Ram, Cow and Goat Sample FGS1 Macroscopy Light green and powder FGS2 Bluish green and velvely FGS3 Snow white and velvely to powdery FGS4 White – yellow to cream Microscopy branching hyphae with multinucleated mycilia bearing string of beads of yellow green septate conidiphores. Aerial hyphae, bearing smooth and green conidiophores, with head hypically columnar Aerial hyphae with conidiogenous cells annalete Smooth walled, whitish to creamish conidiosphores in mass. Pseudomycelium, with plastospores oral to cylindrical guilliermond Identified organism Aspergillus flavus Aspergillus fumigatus Scopulariopsis candida Candida Table 3. Growth of bacteria on cellulose agar Bacteria Bacteroides spp I II and III Streptococcus spp Peptococcus spp Homofermentative lactobacillus Clostridium spp Alcaligens spp Nesseria spp Yersinia spp Iand II Staphylococcus spp Bacillus spp Veillonella spp Growth +++ ++ ++ ++ ++ + + ++ ++ -ve -ve Table 4. Growth of fungi on cellulose agar Fungi Aspergillus flavus Aspergillus fumigatus Scopulariopsis candida Candida guilliermondii (33.3%) each while Veillonella and Bacillus had 16.6% each. Seven bacterial species were isolated from cow with Streptococcus having (22.2%) Staphylococcusalco also (22.2%) while Bacteroides, Yersinia, Peptococcus, Nesseria and Bacillus had equal distribution. Goat had eight bacterial specie including Bacteroides, Veillonella, Clostridium, Yersinia, Staphylococcus, Homofermentative Lactobacillus Alcaligens and Bacillus all of which had equal distribution. However, Bacteroides and Bacillus are common in all rumen (ram, cow and goat) with Bacteroides, being more prevalent in the ram. While Streptococcus was not isolated from the ruminal content of ram and goat it was found to be present in cow and this is in line with the findings of Oyeleke and Okusanmi (2008) where the percentage of occurrence Streptococcus overwhelm the percentage of occurrence of all other isolates in the rumen of cow. Veillonella was isolated from both ram and goat ruminal content but was Growth +++ +++ + - absent in that of cow. As the study revealed the presence of Bacteroides and Streptococcus as cellulose hydrolyzing bacteria, this agrees with Lynd, et al (2002), and Oyeleke and Okusanmi (2008) who isolated those organisms and implicated them in the hydrolysis of cellulose. The presence of Bacillus in the ruminants as noncellulose hydrolyzing bacteria except Homofermentative lactobacillus is contrary to Lynd et al (2002), Oyeleke and Okusanmi (2008) who reported Bacillus as hydrolyzing organism. Apart from Staphylococcus population encountered, Bacteroides were the most highly prevalent in the ruminants with (17.3%) followed by Bacillus (13.0) and then Streptococcus and Yersinia (8.69%) each in (table 4) Fungi also inhabit the rumen and are known to play an important role in the degradation of polysaccharides other than cellulose as strengthening Studies on cellulose degrading microorganisms associated with rumen of ruminant animals World J. Microbiol. 031 Figure 1. Occurrence of Bacterial isolates in the Rumen of Ruminant Figure 2. Occurrence of Fungal Isolates in the rumen of Ruminant agents in the cell wall of woody plants (Madigan et al, 2000) In this research four fungal species were isolated from the rumen of the ruminants and their presence and percentages of occurrence were represented in figure 4.2, i.e for ram, cow and goat and also the overall percentages of occurrence. A. fumigatus was observed to be common in all the rumens, but had the highest percentage of occurrence 87.5% in cow, represented the highest percentage of (64%) on the overall. A. flavus was not found in ram but was isolated from cow, and goat. However, S. scopulariopsis, appeared in all rumen, but more prevalence in ram (62.5%), C. guilliermondii appeared in ram and goat but more in goat. Based on cellulose degradation capability (Table 4) A. fumigatus and A. flavus had the maximum cellulose degradation. However the fungal species isolated is related to the previous findings of Masoni et al (1997) where he reported that members of the division Deutromyces e.g those of the genera Aspergillus have cellulolytic enzymes; Oyeleke and Okusanmi (2008) isolated A. flavus from rumen of ruminants and implicated it in cellulose degradation. CONCLUSION The study revealed that ruminants (ram, cow, and goat) harbors various organisms that are active cellulose Studies on cellulose degrading microorganisms associated with rumen of ruminant animals Sambo and Salau 032 degraders, out of which Bacteroides specie grow best on cellulose agar. Rumen should be a site for isolation of micro organisms that are capable of cellulose hydrolysis in order to reduce the coast of purchasing commercial enzymes. ACKNOWLEDGEMENT The authors acknowledged the contributions of Dr. Anshu S Chatli, Saud Hamidovic, Ewa Karwowska, Prof. Dr. Mohamed S. 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