C H A P T E R 2 Summary of Expectations Briefly explain each of the following points. • The laws of thermodynamics govern the flow of energy in living and non-living systems. (2.1) • The first law of thermodynamics states: Energy can neither be created nor destroyed but can be transformed from one form to another. (2.1) • The second law of thermodynamics states: Energy cannot be transformed from one form to another without a loss of useful energy. (2.1) • Entropy is a measure of randomness in a system. (2.1) • In an endothermic reaction, the reactants contain less energy than do the products; therefore extra energy must be added for the reaction to take place. In an exothermic reaction, the reactants contain more energy than do the products; therefore there is a release of energy. Both reactions require activation energy to begin. (2.1) • Enzymes are specialized proteins that catalyze reactions in cells by lowering the required activation energy. (2.2) • Each step of a metabolic pathway, or each constituent reaction of the pathway, needs its own specific enzyme. (2.2) • The induced-fit model describes how an enzyme binds with its substrate in order to catalyze a reaction. (2.2) • The process by which an enzyme binds to a substrate, facilitates a reaction, releases the products of that reaction, and then binds to another substrate (beginning the process anew) is called the catalytic cycle. (2.2) • The factors that affect enzyme activity are temperature, pH, inhibitors, cofactors, and coenzymes. (2.2) • There are two kinds of enzyme inhibition — competitive inhibition and non-competitive inhibition. (2.2) R E V I E W • Cofactors and coenzymes also affect enzyme activity. They have been used to combat illness such as cancer and Chronic Fatigue Syndrome. (2.2) • The energy released by an exothermic reaction can be used to drive an endothermic one. Such a combination of reactions is called a coupled reaction. (2.3) • ATP is manufactured by coupled reactions. (2.3) • ATP is a molecule composed of the sugar ribose, the base adenine, and three phosphate groups. It is the common energy currency in all cells (2.3) • The energy released from the breakdown of ATP is used to fuel metabolic reactions. (2.3) Language of Biology Write a sentence using each of the following words or terms. Use any six terms in a concept map to show your understanding of how they are related. • • • • • • • • • • • • • • • • • • • • • metabolism energy kinetic energy potential energy chemical energy thermodynamics system closed system open system laws of thermodynamics entropy activation energy exothermic reaction endothermic reaction enzymes catalysis oxidative enzyme hydrolytic enzyme substrate metabolic pathway active sites • induced fit • enzyme-substrate complex • catalytic cycle • hydrothermal vents • inhibitors • non-competitive inhibition • allosteric site • feedback inhibition • activators • allosteric regulation • competitive inhibition • cofactors • coenzymes • restriction enzymes • prodrug • coupled reaction • ATP • active transport • sodium-potassium pump UNDE RSTAN DIN G CON CEPTS 1. How do living things use energy? 2. Identify two different forms of energy. 3. Energy cannot be created or destroyed, but it can be transformed. Outline the flow of energy through living things on Earth. 4. How is an open system different from a closed system? 5. What is the catalytic cycle? 6. How is activation energy important in understanding chemical reactions? Chapter 2 Enzymes and Energy • MHR 59 7. How do enzymes affect the rate of biological reactions? 8. How is an endothermic reaction different from an exothermic reaction? 9. Energy flows through living things, but matter is cycled. What does this mean? Explain briefly. 10. Distinguish between hydrolytic and oxidative enzymes. 15. Metabolic inhibition can reduce the waste of energy in a cell. Explain how energy is transformed in a metabolic pathway and how stopping the process conserves energy. 16. What is a competitive inhibitor? 17. Describe how allosteric regulation controls enzyme activity. 18. Identify one cofactor and one coenzyme. 11. What is a thermostable enzyme? 19. Describe how snake venom can affect cellular processes in the human body. 12. How do amino acid R-groups in enzymes affect chemical reactions? 20. How do cofactors and coenzymes contribute to cell processes? 13. Identify two environmental factors that affect the ability of a protein to catalyze a reaction. 21. How does a coupled reaction use energy? 14. How can an enzyme be regulated with an inhibitor? 22. Why is ATP an effective energy transfer molecule in the cell? 23. List three uses for ATP in cells. 24. Why does active transport require energy? IN QU IRY 25. Within the cell, some thermal energy released from chemical reactions causes convection of the cytosol. Design a model of a cell and cell contents to investigate how thermal energy within the cell affects the rate of enzyme reactions in the cell. 26. The enzyme lactase breaks down milk sugar (lactose) into glucose and galactose. Is this enzyme hydrolytic or oxidative? Use molecular model kits to demonstrate your choice. 27. Photosynthesis is an endothermic reaction that is affected by the temperature in the environment. Develop a testable hypothesis that explores how temperature affects photosynthesis. 28. Which process produces more thermal energy, photosynthesis or respiration? Design an experiment to explore this question. 60 MHR • Unit 1 Metabolic Processes 29. Students studied the effectiveness of an enzyme at different temperatures by determining the concentration of product after equal elapsed times. The data table shows their results. (a) Make a graph using these values. (b) Interpret the graph to predict the concentration of the product at 47°C and 80°C. (c) At what temperature does the enzyme function best? Explain your reasoning. Temperature (°C) Concentration of product (µg/L) 24 5 27 6 30 8 32 10 35 15 36 18 40 11 45 9 50 4 60 0 COMMU N ICATIN G 30. Earth is an open system for energy but a closed system for matter. Explain what this means in terms of cell processes. 31. In the ATP cycle, the breakdown of glucose is coupled to the buildup of ATP. Use words and diagrams to describe this process in terms of stored energy, free energy, and thermal energy. 32. Energy flows through living things, but matter is cycled. Explain how enzymes demonstrate efficient use of matter in the cell. 33. Make a flip-book animation to show the induced fit of a substrate on an enzyme’s active site. 34. Enzymes are generally substrate-specific. However, some enzymes can catalyze the reactions of a family of substrates. Use diagrams to show how an enzyme could be specific to two substrates that are similar yet different in structure. (b) are affected by a decrease in pH. 36. This diagram shows the metabolic pathway used by eukaryotic cells to break down proteins. Ubiquitin is a polypeptide chain that joins to certain proteins. Existing enzymes can break down the protein when ubiquitin is connected. (a) How is this pathway energy-efficient? (b) Ubiquitin prepares the protein for the enzyme. How does adding ubiquitin change the protein? ubiquitin polypeptide added protein to be degraded protein fragment protein-ubiquitin complex enzymes break protein into fragments 35. Make a diagram of a polypeptide chain of five amino acids to explain how R-groups: (a) interact with a substrate, and ubiquitin polypeptide released protein fragment M A KIN G CON N ECTION S 37. Is a cell a closed system or an open system? Justify your response. 38. About 95 percent of the electric energy supplied to an incandescent light bulb is lost as waste thermal energy. If this were a biological reaction, how would an enzyme affect the use of energy? 39. Glucose is one of the products of photosynthesis. Glucose can also be produced artificially, but in this case both optical isomers are produced (that is, left-handed and righthanded glucose). Explain how biological enzymes produce only one isomer. 40. Milk is heated when it is pasteurized. The pasteurization process involves heating milk to kill bacteria without denaturing the milk itself. In Canada, milk is heated to 72.8°C for 16 s and then cooled rapidly to 4°C. Ultra High Temperature (UHT) milk products can be heated to 135°C for a shorter period of time, usually 2–5 s. How is each process beneficial to the producer and the consumer? Chapter 2 Enzymes and Energy • MHR 61
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