Molecular Characterization and Phylogenetic Relationships of a Protein with Potential Oxygen-Binding Capabilities in the Grasshopper Embryo. A Hemocyanin in Insects? Diego Sánchez,* Marı́a D. Ganfornina,* Gabriel Gutiérrez,† and Michael J. Bastiani* *Biology Department, University of Utah; and †Departamento de Genética, Universidad de Sevilla, Sevilla, Spain Arthropodan hemocyanins, prophenoloxidases (PPOs), and insect hexamerins form a superfamily of hemolymph proteins that we propose to call the AHPH superfamily. The evolutionary and functional relationships of these proteins are illuminated by a new embryonic hemolymph protein (EHP) that is expressed during early stages of development in the grasshopper embryo. EHP is a 78-kDa soluble protein present initially in the yolk sac content, and later in the embryonic hemolymph. Protein purification and peptide sequencing were used to identify an embryonic cDNA clone coding for EHP. In situ hybridization identifies hemocytes as EHP-expressing cells. As deduced from the cDNA clone, EHP is a secreted protein with two potential glycosylation sites. Sequence analysis defines EHP as a member of the AHPH superfamily. Phylogenetic analyses with all the currently available AHPH proteins, including EHP, were performed to ascertain the evolutionary history of this protein superfamily. We used both the entire protein sequence and each of the three domains present in the AHPH proteins. The phylogenies inferred for each of the domains suggest a mosaic evolution of these protein modules. Phylogenetic and multivariate analyses consistently group EHP with crustacean hemocyanins and, less closely, with insect hexamerins, relative to cheliceratan hemocyanins and PPOs. The grasshopper protein rigorously preserves the residues involved in oxygen binding, oligomerization, and allosteric regulation of the oxygen transport proteins. Although insects were thought not to have hemocyanins, we propose that EHP functions as an oxygen transport or storage protein during embryonic development. Introduction Some arthropods rely on proteins called hemocyanins to transport the molecular oxygen needed for respiration. In hemocyanins, oxygen binds to a pair of copper atoms located between four antiparallel a-helices. Each copper atom is coordinated to three histidine residues and is surrounded by a strong hydrophobic environment. Arthropodan hemocyanins are formed by subunits of ;75 kDa arranged in hexamers or multihexamers (for a review, see Van Holde and Miller 1995), with each subunit containing a dinuclear copper site able to bind one oxygen molecule. Arthropodan hemocyanins share significant global sequence similarity with two other protein families: hexamerins and prophenoloxidases (PPOs). All these proteins are presumably related by common ancestry (Beintema et al. 1994; Burmester and Scheller 1996), and they might be considered to form a superfamily that we propose to name the AHPH superfamily, an acronym from arthropodan hemocyanins, PPOs, and hexamerins. Hexamerins are proteins used for amino acid storage in larval stages of insects (Telfer and Kunkel 1991). Some hexamerins can be grouped into separate classes according to their content of methionine or aromatic residues and are therefore called methionine-rich proteins and arAbbreviations: DIC, differential interference optics; EHP, embryonic hemolymph protein of the grasshopper; LHP, larval hemolymph protein of the locust; ORF, open reading frame; PPO, prophenoloxidase; SDS-PAGE, sodium dodecylsulphate polyacrylamide gel electrophoresis; UTR, untranslated region. Key words: grasshopper, hemocyanin, hexamerin, prophenoloxidase. Address for correspondence and reprints: Diego Sánchez, Biology Department, 229 South Biology, University of Utah, Salt Lake City, Utah 84112. E-mail: [email protected]. Mol. Biol. Evol. 15(4):415–426. 1998 q 1998 by the Society for Molecular Biology and Evolution. ISSN: 0737-4038 ylphorins, respectively. They are hexamers with subunits in the 80-kDa range synthesized in the fat body and secreted to the hemolymph, where they reach high concentrations just before metamorphosis (Telfer and Kunkel 1991). Hexamerins do not bind oxygen, since the copper-binding histidine residues have been replaced. They are very common and abundant in insects (Scheller, Fischer, and Schenkel 1990), and hexamerinlike proteins might exist in crustaceans (Markl et al. 1979a). However, no copper-free hemocyanin-related protein has been found in chelicerates (Markl et al. 1979b). Phenoloxidase activity is ubiquitously found in invertebrates, and PPOs from a crustacean and several insects have recently been molecularly characterized (Aspán et al. 1995; Fujimoto et al. 1995; Hall et al. 1995; Kawabata et al. 1995). As copper-containing proteins, PPOs preserve the dinuclear copper sites of hemocyanins. PPOs are synthesized in the cytoplasms of hemocytes without a signal peptide, released to the hemolymph upon cellular rupture, and activated by proteolysis. In arthropods, the PPO active form (PO) is involved in defense reactions, wound healing, and cuticular sclerotization (Johansson and Söderhäll 1996; Sugumaran et al. 1992). Hemocyanins have been found in three arthropod groups: crustaceans, chelicerates, and a single order of myriapods. However, hemocyanin has not been reported in insects. This finding has been explained by the existence of a tracheal respiratory system in this subphylum. In this paper, we describe the finding of a soluble protein present in the hemolymph of the grasshopper (Schistocerca americana) embryo that we call EHP (for embryonic hemolymph protein), whose sequence shows high similarity to hemocyanins, and particularly preserves the residues involved, both directly and indirectly, in oxygen binding. We also study the EHP expression 415 416 Sánchez et al. pattern and the phylogenetic relationships of this insect protein with the AHPH proteins. These data support a monophyletic origin of crustacean hemocyanins and hexamerins but also suggest that hexamerins have evolved from hemocyanins present in the insect lineage. Moreover, the separate phylogenetic analyses of the AHPH domains suggest an independent evolution for these protein domains. Our phylogenetic and multivariate analyses strongly suggest that EHP is an insect hemocyanin, likely functioning in oxygen transport or storage during embryonic development. Materials and Methods Protein Purification, Microsequencing, and Molecular Cloning of EHP cDNA The EHP protein was accidentally purified by affinity chromatography with the mAb 7D2 against the protein Conulin (Sánchez, Ganfornina, and Bastiani 1996) from the soluble fraction of embryonic grasshopper (Schistocerca americana) lysates. After purification, the EHP protein was either N-terminally sequenced by automated Edman degradation (Applied Biosystems 477A) or digested with Endolysine-C (Lys-C; Boehringer-Mannheim). The resulting peptides were then separated by reverse-phase HPLC and sequenced. Degenerate oligonucleotides were designed from the peptide sequences to amplify fragments from grasshopper cDNA using PCR with Taq DNA polymerase (Saiki et al. 1988). Embryos at 45% of development (staged by percentage of embryonic development; hatching in 20 days at 308C) were used to obtain the cDNA. A nested PCR strategy was used, and only the bands that reamplified with the expected size were studied further. PCR was conducted in a thermal cycler (Perkin Elmer Cetus), and cycling conditions were as follows: one cycle of 948C for 2 min; 35 cycles of 948C for 30 s, 478C for 30 s, and 728C for 45 s; and a final cycle of 728C for 5 min. A PCR product of 550 bp was amplified, cloned into the pCR-II vector using the TA system (Invitrogen), and sequenced. The 550-bp fragment was radiolabeled by random priming (Prime-It II kit, Stratagene) and used as a probe to screen a cDNA library made from nerve cords dissected from 55% embryos. This library was constructed using cDNA primed with oligo(dT) and directionally cloned using the lZAP system (Stratagene). We screened 0.5 3 106 plaque-forming units from the amplified cDNA library. Several positive clones were obtained, and two were studied further. The clone EHP-8 contains an insert of 2,310 bp and codes for the fulllength EHP protein. The clone EHP-1 contains an insert of 2,067 bp and is identical to EHP-8, but is truncated at the 59 end. Both strands of the cDNA inserts were sequenced using Sequenase (version 2.0, U.S. Biochemicals) and custom primers. DNA and protein sequences were analyzed with the BLAST service (Altschul et al. 1990) and the GCG programs (Devereux, Haeberli, and Smithies 1984). To study the codon preference in the EHP-8 open reading frame (ORF), a codon usage table was made from available Schistocerca and Locusta coding sequences. Analysis of EHP RNA Expression In situ hybridizations were carried out according to a protocol for grasshopper whole-mount embryos (Ganfornina, Sánchez, and Bastiani 1995). A digoxigenin-11dUTP labeled (Genius-4 kit, Boehringer-Mannheim) RNA probe was synthesized using the EHP 550-bp fragment as template. Embryos were dissected and fixed in PEM-formaldehyde (37% formaldehyde 1:9 in 0.1 M PIPES, 2 mM EGTA, 1 mM MgSO4, pH 6.9) for 50 min. After washing, they were incubated in hybridization solution (50% deionized formamide, 4 3 SSC, 250 mg/ml yeast tRNA, 500 mg/ml salmon sperm DNA, 50 mg/ml heparin, 0.1% Tween-20, 1 3 Denhardt’s solution, 5% dextran sulfate) at 558C. The labeled RNA probe was added at 0.5 mg/ml, and incubation proceeded for 36–48 h. After washes, the labeled RNA was detected with an alkaline phosphatase-conjugated anti-digoxigenin antibody (Boehringer-Mannheim). Phylogenetic Analysis Sequences were retrieved from the databases SwissProt, PIR, PDB, EMBL, and GenBank at their releases by February 13, 1997. The most recent entry was considered when several sequences were available for a given protein. Only the mature protein sequences were used, either deduced from the known mature N-terminal amino acid or predicted by von Heijne’s (1990) method. Partial sequence entries were excluded. According to Beintema et al. (1994), proteins were named using an abbreviated species name followed by a functional label. Protein sequences were aligned with CLUSTAL W (1.6) (Thompson, Higgins, and Gibson 1994) using a PAM series scoring matrix and a gap penalty mask based on the aligned secondary structures of Pint.HcA and Lpol.HcII. The alignment has been deposited in EMBL (accession number DS32507). Phylogenetic analyses were carried out using the PHYLIP (3.5) (Felsenstein 1993) and PAUP (3.0) (Swofford 1991) software packages. Alignment gaps were considered missing data and not used for phylogenetic inference. Corrected distances were calculated with the program PROTDIST using the PAM 001 matrix. The neighbor-joining (Saitou and Nei 1987) method was used to reconstruct distance trees. Parsimony analyses were performed with the PROTPARS program of the PHYLIP package, and with the PAUP software under a heuristic search option. Analysis with PAUP was performed for comparison but is not shown in figures. Multivariate Analysis Principal-component analysis (PCA) on centered variables was performed with the program NetMul (Thioulouse and Chevenet 1996). The input for this analysis consisted of the mole percentage amino acid compositions of the mature AHPH proteins used in the phylogenetic analyses, along with the compositions obtained by amino acid analysis of the locust LHP (de Kort and Koopmanschap 1987), Pint.HcA, Ecal.HcD, and EHP, a Putative Hemocyanin in the Grasshopper Embryo FIG. 1.—Expression pattern of grasshopper EHP. In situ hybridizations in whole-mount grasshopper embryos with an antisense (A) or sense (B) RNA probe made from a 550-bp DNA fragment of the EHP cDNA. View from the dorsal surface with DIC optics. Anterior is up. Hemocytes attached to the basal membrane appear labeled, while no labeling is observed in muscle (arrow) and neural (asterisk) cells. Scale bar 25 mm. two hemocyanins from centipedes (Mangun et al. 1985). Given the difficulty for the amino acid analysis to distinguish between residues Q-E, and N-D, the mole percentage values of these pairs estimated from the protein sequences were combined. Seventeen variables, including 15 residues and the combinations Q 1 E and N 1 D, were considered for the analysis. Results and Discussion Identification of Grasshopper EHP as a Soluble Protein Synthesized by Hemocytes During Embryonic Development The grasshopper EHP was identified during purification of the neural protein Conulin (Sánchez, Ganfornina, and Bastiani 1996). After purification and LysC digestion, the sequences of three EHP peptides were obtained. These sequences were used to design degenerate oligonucleotides to PCR-amplify the embryonic cDNA coding for the protein. A 550-bp DNA fragment was obtained that shows a unique ORF and contained regions coding for the N-terminal peptide and an internal peptide. We studied the spatial localization of EHP mRNA using in situ hybridization to whole-mount grasshopper embryos. Sense and antisense digoxigeninlabeled RNA probes were generated using the 550-bp PCR fragment. EHP mRNA expression is detected at 45% of development in sessile hemocytes, shown in figure 1A over the basal membrane of the ventral nerve cord. Neurons and muscle cells are highlighted with asterisks and arrows, respectively, to show the absence of labeling in those cell types. No labeling was observed in the cells of the fat body (not shown), the place of synthesis of insect storage proteins (Telfer and Kunkel 1991). Hybridization is absent in embryos exposed to the sense RNA probe (fig. 1B), indicating that the signal observed with the antisense probe is specific for the endogenous mRNA. These results indicate that EHP mRNA is present during embryonic development and that EHP is synthesized by hemocytes. 417 The purification of the protein from the soluble fraction of embryonic lysates, its hemocyte origin, and the presence of a signal sequence in the molecule (see below) suggest that EHP is exported into the hemolymph. It was consequently named embryonic hemolymph protein. Intriguingly, EHP is present as a soluble protein at 45% of development, long before dorsal closure and heart functioning (which occurs at 65%–70% of development), and thus before a true hemolymph is formed. Therefore, at early developmental stages, EHP is probably free in the yolk sac. EHP-8, the full-length cDNA coding for EHP, has a 2,310-bp insert that includes the three sequenced peptides (underlined in fig. 2A). It comprises an ORF of 2,025 bp after a 59 untranslated region (UTR) of 27 bp. The 550-bp probe hybridizes to bp 91–664. The first methionine codon encountered in frame in the EHP-8 clone is in an appropriate context to be the translation initiation site according to Cavener and Ray (1991) and by comparison with the nucleotide flanking sequences found in other grasshopper genes. The correctness of the ORF defined above is further supported by the GC bias at every third base and the codon preference analysis. Two potential polyadenylation signals are found in the 257-bp 39 UTR, which ends with a poly-A sequence. The N-terminal end of EHP predicted by this ORF is highly hydrophobic (fig. 2B) and may represent a leader signal peptide. The predicted cleavage site for the signal peptide (von Heijne 1990) (arrowhead in fig. 2A) agrees with the N-terminal protein sequence obtained. This and the lack of other suspected membrane-anchoring regions indicates that EHP is a secreted protein. The predicted mature EHP would have a molecular mass of 76.2 kDa and an isoelectric point of 6.38. EHP has two potential N-glycosylation sites (residues N172 and N317, circled in fig. 2A), and five cysteines (boxed in fig. 2A) that may form disulfide bonds. Similarity of EHP to Crustacean Hemocyanins; Phylogenetic and Multivariate Analysis of the AHPH Superfamily When the sequence of the mature EHP is compared with those of other known proteins, it shows the highest similarity with subunit A of the lobster Panulirus interruptus hemocyanin (Pint.HcA; Bak and Beintema 1987). The Pint.HcA and EHP sequences align with minor gaps, and the overall pairwise similarity (43% identity; 64% when considering conservative substitutions) is higher than that between crustacean and cheliceratan hemocyanins (31%–33% identity; Beintema et al. 1994). The grasshopper EHP showed significant global similarity with hemocyanins, insect hexamerins, and PPOs. Therefore, we studied the phylogenetic relationships of these protein families (see fig. 3 and table 1), including the grasshopper EHP. After aligning the amino acid sequences, two methods were used to find phylogenetic relationships (corrected distances and maximum parsimony, see Materials and Methods). Trees inferred with both methods showed identical topologies for the main branches (fig. 3). Numbers at nodes indicate bootstrap percentage from 100 replicates. A majority rule of 50% 418 Sánchez et al. was established, unsupported nodes were excluded, and their branches were forced to yield polytomies. We used PPOs as an outgroup due to their assumed presence in all arthropod groups and their closer relationship with cheliceratan hemocyanins, which suggest a common ancestry with hemocyanins before the separation of the main arthropod groups. Three main protein groups are determined. The PPOs and cheliceratan hemocyanins both appear as different clades, while a single monophyletic group is formed by crustacean hemocyanins and insect hexamerins. The grasshopper EHP groups with the crustacean hemocyanins with a well supported node, and consistently separates from the monophyletic hexamerins. The internal branching pattern of crustacean hemocyanins and PPOs is well supported, but that of cheliceratan hemocyanins shows some unsupported nodes. A number of nodes organizing the hexamerin tree have low bootstrap values and vary when parsimony or distance methods are considered, as previously reported (Beintema et al. 1994; Burmester and Scheller 1996). However, some groups, like the methionine-rich hexamerins (sequences 7, 13, 14, 16, and 17 of table 1), and the dipteran (sequences 19–21 of table 1) and lepidopteran (sequences 8, 9, 11, and 12 of table 1) arylphorins consistently separate in distinct clusters. Other hexamerins that group together are the juvenile hormone-suppressible proteins (sequences 10 and 15 of table 1), the hexamerins from two cockroaches (sequences 1 and 3 of table 1), and the Rcla.cyaA-B cyanoproteins (sequences 4 and 5 of table 1). The poorly supported topology and the longer overall branch length of the hexamerin distance tree (not shown) imply a higher divergence in the sequences of these insect proteins, which probably relates to a release of their sequences from functional constraints, a conclusion also reached by Burmester and Scheller (1996). A PCA of the amino acid content of the AHPH proteins under study (fig. 4) was used as a different approach to establish groups based on biochemical features other than protein sequence. This analysis also allowed us to include the locust LHP (de Kort and Koopmanschap 1987) and two centipede hemocyanins (Mangun et al. 1985) whose amino acid sequences are not available yet. PCA shows hemocyanins and PPOs as compact and close groups, while hexamerins form a scattered group with three to four main clusters. One of these clusters (I in fig. 4A) clearly segregates the methionine-rich hexamerins, while others (II, III, and IV in fig. 4A and C) group three dipteran arylphorins, lepidopteran arylphorins and the Bdis.Hex, and two juvenile hormone-suppressible proteins, respectively. An independent PCA (fig. 4C) was carried out with the proteins grouped in the lower left quadrant of the plot in figure 4A. PPOs and hemocyanins clearly become apart, and EHP and the centipede proteins group with hemocyanins. LHP segregates between EHP and Lmig.JHBP (arrowhead in fig. 4C). Although EHP is recognized by a serum anti-LHP (kindly provided by S. C. de Kort; data not shown), PCA analysis questions an orthologous relationship between these two proteins. The validity of PCA for including proteins with amino acid composition obtained biochemically was demonstrated by the inclusion in the hemocyanin cluster of the experimental residue composition of Pint.HcA and Ecal.HcD (dotted circles in fig. 4A and C). Analysis of the Evolutionary History and Functions of the Three AHPH Protein Domains Arthropodan hemocyanins are structurally composed of three domains (Volbeda and Hol 1989a; Hazes et al. 1993), with domain 2 being directly involved in oxygen transport. This oxygen-binding domain, in particular the pair of helices forming each copper site, has been proposed to be the ancestral structural character shared by otherwise unrelated oxygen-binding proteins (Volbeda and Hol 1989b). Arthropodan hemocyanins inherited this domain, but two new protein domains were apparently added during evolution. Domain 1 is very important for the allosteric regulation of oxygen binding (Magnus et al. 1994) and seems to determine the extent of the oligomerization (Hazes et al. 1993). Domain 3 is structurally very different from the others, as it contains a seven-stranded Greek key b barrel. It contains a putative calcium-binding site that can play a structural and regulatory role (Hazes et al. 1993). The overall sequence conservation exhibited by AHPH proteins suggests a preserved tertiary structure with three distinct domains that were probably present in the ancestor of these proteins. This prompted us to investigate the existence of different evolutionary trends in each individual domain. If they have followed similar pathways, one may expect congruency between the topology of the tree inferred from the whole sequence (fig. 3) and that of those reconstructed from the separate domains. The initial alignment was subdivided according to the domains of Pint.HcA (Volbeda and Hol 1989a). Corrected distances were used to infer phylogenetic trees of the three domains separately (fig. 5). The overall tree topologies of the different domains are similar to those inferred from the entire sequence (separating the clades of PPOs, cheliceratan hemocyanins, and a group that joins crustacean hemocyanins, grasshopper EHP, and insect hexamerins), as was observed in previous reports (Beintema et al. 1994; Burmester and Scheller 1996). However, important differences emerge from our analysis. → FIG. 2.—A, cDNA and deduced protein sequence of EHP. Nucleotide numbers are on the left, and amino acid numbers are on the right (referred to the first methionine). The cleavage site of the signal peptide is marked by an arrowhead. Two potential N-linked glycosylation sites are circled. Cysteine residues are boxed. The N-terminal peptide and the peptides obtained by Lys-C digestion are underlined. The polyadenylation sites are shown in italics. B, Hydropathy plot of the predicted protein sequence determined by Kyte and Doolittle’s (1982) method using a window of nine residues. The hydrophobic domain at the N-terminal region of the protein represents the signal peptide. EHP, a Putative Hemocyanin in the Grasshopper Embryo 419 420 Sánchez et al. FIG. 3.—Phylogenetic analysis of the AHPH proteins listed in table 1 derived from a protein sequence alignment conducted with CLUSTAL W. The secondary structures of two hemocyanins (Lpol.HcII and Pint.HcA) were used to guide the alignment. The topologies of trees inferred with distance matrix (left side) or maximum parsimony (right side) methods are shown. The trees were rooted with PPOs as outgroup. Branch lengths are not shown. Numbers at nodes are bootstrap values from 100 replicates. A 50% majority rule was used to yield polytomies. Position of Grasshopper EHP in the Domain Trees The grasshopper EHP and crustacean hemocyanins form a monophyletic group for domains 1 and 2. These results add support to the hypothesis that EHP is an insect hemocyanin. However, EHP becomes grouped with hexamerins when analyzing domain 3. Both topologies support the existence of a common ancestor for hexamerins and crustacean hemocyanins as proposed by Burmester and Scheller (1996), but the existence of a monophyletic association of EHP and the hexamerin clade for domain 3 refines this proposal. This result suggests that unless convergence is invoked, hexamerins have evolved from insect hemocyanins, with which they still share higher similarity in domain 3, and not directly from crustacean hemocyanins. Taken together, these data reinforce the current view of a monophyletic origin of insects and crustacea (Averof and Akam 1995). Domainal Analysis of Different AHPH Clades The tree topologies observed in the PPO clade appear to be well maintained. The branch lengths are longer for domain 1, which might be explained by the pro- teolytic separation of domain 1 from the active PO form (Aspán et al. 1995). This would liberate domain 1 from functional constraints, enabling this domain to evolve with higher rates of change in different arthropods. The branching patterns of the cheliceratan hemocyanins broadly vary depending on the domain considered, but are generally weakly supported. This variation can be due to the presence of hemocyanins from several classes and orders of chelicerates in the sample of sequences available. These hemocyanins show differences in their quaternary structures (Van Holde and Miller 1995) that could be reflected in their sequences. The branch lengths in this clade also differ depending on the domain under study. The longest are those of domain 1, and the shortest are those of the oxygen-binding domain 2. Crustacean hemocyanins show a well-supported branching pattern with only a slight change in domain 2. The branch lengths show the same tendency as in other hemocyanins and PPOs. The shorter distances observed in domain 2 suggest a higher divergence in the domains not directly related to the oxygen-binding func- EHP, a Putative Hemocyanin in the Grasshopper Embryo Table 1 List of Proteins Used for Amino Acid Sequence Alignments Protein Taxon and Species Abbreviation No. Accession No. Hexamerins Hexamerin subunit precursor. . . . . . . . . . . . . . Juvenile hormone (JH) binding protein . . . . . Allergen (clone (C12) . . . . . . . . . . . . . . . . . . . Cyanoprotein a subunit precursor. . . . . . . . . . Cyanoprotein b subunit precursor. . . . . . . . . . Diapause protein 1 . . . . . . . . . . . . . . . . . . . . . . Sex-specific storage protein 1 . . . . . . . . . . . . . Sex-specific storage protein 2 . . . . . . . . . . . . . Arylphorin precursor . . . . . . . . . . . . . . . . . . . . JH-suppressible protein . . . . . . . . . . . . . . . . . . Arylphorin a subunit precursor. . . . . . . . . . . . Arylphorin b subunit precursor. . . . . . . . . . . . Methionine-rich storage protein 2 . . . . . . . . . . Storage protein 1 . . . . . . . . . . . . . . . . . . . . . . . Acidic JH-suppressible protein . . . . . . . . . . . . Basic JH-suppressible protein 1 . . . . . . . . . . . Basic JH-suppressible protein 2 . . . . . . . . . . . Insecticidal toxin. . . . . . . . . . . . . . . . . . . . . . . . Hexamerin . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Arylphorin subunit A4 . . . . . . . . . . . . . . . . . . . Larval serum protein 1 b subunit . . . . . . . . . . Larval serum protein 2. . . . . . . . . . . . . . . . . . . Hemocyanins Embryonic hemolymph protein. . . . . . . . . . . . Hemocyanin Hemocyanin Hemocyanin Hemocyanin chain a. . . . . . . . . . . . . . . . . . . . . chain b. . . . . . . . . . . . . . . . . . . . . chain c. . . . . . . . . . . . . . . . . . . . . precursor . . . . . . . . . . . . . . . . . . . Hemocyanin AA6 chain. . . . . . . . . . . . . . . . . . Hemocyanin chain a. . . . . . . . . . . . . . . . . . . . . Hemocyanin chain d. . . . . . . . . . . . . . . . . . . . . Hemocyanin chain e. . . . . . . . . . . . . . . . . . . . . Hemocyanin subunit II. . . . . . . . . . . . . . . . . . . Hemocyanin a subunit . . . . . . . . . . . . . . . . . . . Prophenoloxidases Prophenoloxidase subunit 1 . . . . . . . . . . . . . . . Prophenoloxidase subunit 2 . . . . . . . . . . . . . . . Prophenoloxidase . . . . . . . . . . . . . . . . . . . . . . . Prophenoloxidase A1 . . . . . . . . . . . . . . . . . . . . Prophenoloxidase . . . . . . . . . . . . . . . . . . . . . . . Arylphorin receptors Arylphorin receptor . . . . . . . . . . . . . . . . . . . . . Fat-body protein 1 precursor . . . . . . . . . . . . . . Storage protein-binding protein. . . . . . . . . . . . Insecta Orthoptera Blaberus discoidalis Locusta migratoria Periplaneta americana Hemiptera Riptortus clavatus Riptortus clavatus Coleoptera Leptinotarsa decemlineata Lepidoptera Bombyx mori Bombyx mori Galleria mellonella Galleria mellonella Manduca sexta Manduca sexta Manduca sexta Hyphantria cunea Trichoplusia ni Trichoplusia ni Trichoplusia ni Hymenoptera Bracon hebetor Diptera Anopheles gambiae Calliphora vicina Drosophila melanogaster Drosophila melanogaster Insecta Schistocerca americana Crustacea Panulirus interruptus Panulirus interruptus Panulirus interruptus Penaeus vanameii Chelicerata Androctonus australis Eurypelma californica Eurypelma californica Eurypelma californica Limulus polyphemus Tachypleus tridentatus Insecta Lepidoptera Bombyx mori Bombyx mori Manduca sexta Diptera Drosophila melanogaster Crustacea Pacifastacus leniusculus Insecta Diptera Calliphora vicina Drosophila melanogaster Sarcophaga peregrina Bdis.Hex Lmig.JHBP Pame.Aller 1 2 3 U31328 U74469 L40818 Rcla.cyaA Rcla.cyaB 4 5 D87272 D87273 Ldec.DP1 6 X76080 X86074 Bmor.SSP1 Bmor.SSP2 Gmel.Ary Gmel.JHSP Msex.AryA Msex.AryB Msex.MRSP Hcun.SP1 Tni.AJHSP Tni.BJHSP1 Tni.BJHSP2 7 8 9 10 11 12 13 14 15 16 17 X12978 P20613 A61619 L21997 P14296 P14297 L07610 U60988 M57443 Q06342 Q06343 Bheb.Tox 18 1612710 Agam.Hex Cvic.Ary Dmel.LSP1 Dmel.LSP2 19 20 21 22 U51225 X59391 U63556 X97770 Same.EHP 23 AF038569 Pint.HcA Pint.HcB Pint.HcC Pvan.Hc 24 25 26 27 A24183 S02707 S21221 S55387 Aaus.Hc6 Ecal.HcA Ecal.HcD Ecal.HcE Lpol.HcII Ttri.HcA 28 29 30 31 32 33 P80476 A37975 P02241 S06701 A26713 Linzen et al. 1985 Bmor.PPO1 Bmor.PPO2 Msex.PPO 34 35 36 D49370 D49371 L42556 Dmel.PPO 37 D45835 Plen.PPO 38 X83494 Cvic.AryR Dmel.FBP1 Sper.ABP 39 40 41 S46948 Q04691 D29741 421 422 Sánchez et al. With respect to domain 3, we did separate distance and parsimony analyses (not shown) including three arylphorin receptors that seem to be phylogenetically related to their arylphorin ligands (Burmester and Scheller 1996). Only domain 3 was considered, as the other two domains show nonsignificant sequence similarities when all the AHPH proteins are included in the analysis. The arylphorin receptors form a monophyletic clade within the hexamerins in distance and parsimony phylogenies, in contrast to a previous report (Burmester and Scheller 1996) in which the arylphorin receptors and hexamerins separate in different clades. The different grouping cannot be explained by substantial alignment differences, but instead might be the result of the larger number of sequences included in our analysis. Functional and Structural Conservation of Domain 3 FIG. 4.—Principal-component analyses on centered variables of the amino acid compositions of selected AHPH proteins. A, Projection of the two most significant components (1 5 36% of the total variance; 2 5 19% of the total variance) of all the AHPH proteins (names detailed in table 1). C, Projection of the two most significant components (1 5 28% of the total variance; 2 5 18% of the total variance) when only the proteins segregated in the lower left quadrant of plot A were considered. B and D, Amino acid (single-letter code) contribution to the two first components obtained in A and C, respectively. Symbol identification is shown on the right. Hollow symbols show amino acid compositions calculated from the mature protein sequence. Crossed hollow circles are the Pint.HcA and Ecal.HcD compositions calculated from the mature protein sequences. Dotted hollow circles are the Pint.HcA and Ecal.HcD compositions obtained by amino acid analysis. These and the centipede hemocyanin compositions are reported in (Mangun et al. 1985). Locust LHP composition obtained from (de Kort and Koopmanschap 1987). Arrows point at the juvenile hormone-suppressible hexamerins. Arrowhead indicates Lmig.JHBP. The clusters of hemocyanins, PPOs, and hexamerins are enclosed by continuous, short dashed, and long dashed lines, respectively. Roman numbers represent different hexamerin clades (see Results for details). tion. However, we might expect this clade topology to change substantially when hemocyanins from other crustacean classes are described. The same difficulties in assigning hexamerin relationships obtained from the entire protein sequences are observed when individual domains are considered. Although the internal branching patterns of hexamerins are disparate, several clades are relatively well supported, such as the methionine-rich hexamerins, the juvenile hormone-suppressible proteins, and the two groups of arylphorins. It is important to emphasize the lightly sustained topology in domain 1, where even the monophyletic nature of hexamerins is challenged with a 38% bootstrap node. Distances are larger for domains 2 and 1, which can be explained by the missing oxygen-binding function reported in these insect proteins. In contrast, domain 3 displays shorter and more homogeneous distances. The divergence among the distinct clades of AHPH proteins, as derived from the corrected distances of the main branches of the trees, also indicate that domain 1 is the most variable, while domains 2 and 3 are well preserved. The conservation of domain 2 in hemocyanins and PPOs is not surprising, given the functional similarities between those proteins. However, the preservation of domain 3, not only in hemocyanins and PPOs, where it could play an important role in the regulation of copper-binding, but also in the highly divergent hexamerins and their receptors, is interesting. The secondary structure of domain 3 appears to have convergently evolved in a number of other proteins (Hazes and Hol 1992), and it could be argued that its preservation is merely due to a structural requirement for the AHPH proteins. However, it is clear from other protein families (e.g., the lipocalins) that a strongly conserved b barrel topology can be achieved without the necessity of a well-preserved primary structure. Our analysis shows a highly conserved sequence for the domain 3 of the AHPH proteins and leads us to propose its further preservation for functional reasons. Given its outer location in the hexamer (Volbeda and Hol 1989a; Hazes et al. 1993), we hypothesize a role in protein– protein interactions such as those involving receptor-mediated endocytosis of hexamerins (Wang and Haunerland 1994) and those of PPOs with other proteins participating in cellular defense reactions (Aspán et al. 1995). The inner cavity of the barrel could also be used for binding ligands such as biliverdin (found in the hexamerins Rcla.cyaA-B [Chinzei et al. 1990] and in a locust hexamerin [De Bruyn, Koopmanschap, and de Kort 1986]) or riboflavin (found in several hexamerins; Miller and Silhacek 1995). Moreover, domain 3 has been proposed to be conserved between the AHPH proteins and the yeast and vertebrate tyrosinases (Kupper et al. 1989), where this domain is proteolytically separated from the active form of the enzyme. The tyrosinases and molluscan hemocyanins are thought to be ancestrally related to some AHPH proteins due to the similarity exhibited in the pair of a-helices of copper site B (Van Holde and Miller 1995). We propose as a working hypothesis that domain 3 was part, together with these a- EHP, a Putative Hemocyanin in the Grasshopper Embryo 423 FIG. 5.—Phylogenetic relationships of the three separate domains of the AHPH proteins estimated by a distance matrix method. Domain boundaries are taken from Pint.HcA (Volbeda and Hol 1989a). Protein sequences are numbered as shown in table 1. Boxes, circles, and diamonds represent hexamerins, hemocyanins, and PPOs, respectively. EHP is represented as a black circle. Bootstrap values (100 replicates) are shown with a 50% majority rule. helices, of the ancestral protein that originated hemocyanins and tyrosinases. In summary, our results support the view that the three domains present in the AHPH proteins are evolving as independent modules, under different selective pressures and functional constraints. Sequence Analysis Strongly Supports a Functional Relationship of EHP with Hemocyanins The results above suggest a well-supported relationship of EHP with crustacean hemocyanins and, therefore, the existence of hemocyanins in insects. To better substantiate this proposal, we studied in detail the residues conserved between EHP and Pint.HcA. The overall similarity between these two proteins becomes even more significant when the oxygen-binding domain 2 (56% identity) is considered separately. An alignment of this domain of EHP with two hemocyanins and se- lected PPOs and hexamerins is shown in figure 6. EHP shares with hemocyanins and PPOs the six copper-binding histidine residues. Moreover, the grasshopper protein preserves every residue involved in the hydrogen-bonding network of the dinuclear copper site and 80% of the residues forming the hydrophobic core close to the copper atoms of Pint.HcA. The residue F49 in domain 1 (not shown), key in the allosteric regulation of oxygen binding, and E309, which controls the entrance of oxygen to the coppers, are also conserved in EHP (Hazes et al. 1993; Magnus et al. 1994). Finally, two out of the five cysteine residues of EHP (C562, C611) are shared with Pint.HcA, where they form a disulfide bond involved in the formation of cavities surrounding the copper sites. This disulfide link is conserved in hemocyanins and PPOs but is present only in some hexamerins. The extensive sequence similarity suggests that EHP probably contains copper that would allow it to bind 424 Sánchez et al. FIG. 6.—Alignment of the oxygen-binding domain of hemocyanins with EHP and selected hexamerins and prophenoloxidases (see table 1 for protein identification). Domain 2 boundaries are taken from Pint.HcA (Volbeda and Hol 1989a). The sequences were aligned with CLUSTAL W. Gray boxes show residue identities of EHP either with Pint.HcA or with more than three of the selected proteins. Important residues involved in oxygen binding and oligomerization of Pint.HcA are highlighted as detailed in the figure. molecular oxygen. Moreover, residues involved in the quaternary structure of Pint.HcA (dimer and trimer contact sites in the hexamer) are also significantly conserved in EHP (fig. 6). These residues are also conserved in hexamerins and suggest a common hexameric structure for the whole clade. Several other features of EHP appear to be related to this evolutionary history. EHP is a secreted protein, a character shared with hexamerins and crustacean hemocyanins, and not with cheliceratan hemocyanins and PPOs, which lack a signal peptide. The secreted nature of crustacean hemocyanins is based on the signal peptide present in Pvan.Hc (Sellos, Lemoine, and Van Wormhoudt 1997). However, EHP is synthesized by hemocytes, while crustacean hemocyanins and insect hexamerins are synthesized by the hepatopancreas (Van Holde and Miller 1995) and the fat body (Telfer and Kunkel 1991), respectively. Like EHP, PPOs are synthesized by hemocytes (Kawabata et al. 1995), and these enzymes are expected to be present in grasshoppers. However, the sequence similarity values, the numerous and distinctly situated gaps present in the alignment of EHP with insect PPOs, and the differences in their biosynthetic pathways and posttranslational modifications of these proteins do not support a functional relationship between EHP and PPOs. How do we interpret the sequence relationships of EHP with hemocyanins? One could consider EHP to be a nonfunctional relic of hemocyanins in insects. We think, however, that this is an unlikely hypothesis, given the relative abundance of this embryonic protein and the high divergence rates that it should have experienced when released from a functional constraint, as is clear for hexamerins (see above). A second alternative is that EHP represents an ancestral state in the evolution of hexamerins. Orthopteran hexamerins are expected to be more closely related to crustacean hemocyanins, given that orthopteroids are primitive insects with a long, independent evolution. This view is supported by the disposition of Lmig.JHBP, Bdis.Hex, and Pame.Aller close to the base of the hexamerin clade in our trees. However, EHP never groups with these orthopteran proteins, which eliminates the possibility that EHP is an ancestral insect hexamerin. In summary, sequence similarity and other molecular features suggest a close relationship of EHP and hemocyanins. This is surprising, given the apparent lack of hemocyanins in arthropods equipped with an efficient EHP, a Putative Hemocyanin in the Grasshopper Embryo tracheal respiratory system. However, EHP is present during developmental stages in which the tracheal system is not fully developed. We do not know whether EHP expression is restricted to embryonic life, which might be a reason why EHP-like proteins have not been found in other insects in which only postembryonic development has been explored. Based on the currently available data on grasshopper EHP, a question arises: What is the role of this protein during the embryogenesis of this orthopteran? Given its presence as a soluble protein in the yolk sac, we propose that EHP might be transporting or storing molecular oxygen in the egg. Oxygen is presumably transported in the egg by simple diffusion (Chapman 1971), but an ancillary pathway involving an oxygen transport protein might be a safety mechanism during periods of low oxygen supply to the egg or periods of accelerated embryonic growth with high metabolic rates. A similar function has been demonstrated for hemoglobins found in solution in the hemolymph of some aquatic insects (Chapman 1971; Markl and Decker 1992). In spite of the plausibility of this hypothesis, a definitive demonstration for a role of EHP as an oxygen transport protein and its prevalence in insects will require further investigations. However, the existence of insect proteins with strong sequence similarity to hemocyanins raises interesting questions about their physiological role and their evolutionary relationships within the AHPH protein superfamily. During the review process of this article, a new crustacean hemocyanin from the Dungeness crab Cancer magister was reported (Durstewitz and Terwilliger 1997), and its phylogenetic relationship with some members of the AHPH family was analyzed. A parsimony analysis groups the crab hemocyanin with Pint.HcC. Acknowledgments We want to thank S. C. de Kort for his gift of the locust LHP anti-serum, and E. Ball, J. Law, R. Doolittle, J. Seger, and two anonymous reviewers for helpful comments on the manuscript. We also thank M. Herrera for help with protein purification. L. Giuli, a high school student sponsored by a Howard Hughes fellowship, enthusiastically helped us with the molecular cloning. 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