Experimental Cell Research 281, 9 –18 (2002) doi:10.1006/excr.2002.5656 MINIREVIEW The Central Role of the Trans-Golgi Network as a Gateway of the Early Secretory Pathway: Physiologic vs Nonphysiologic Protein Transit T. L. Tekirian 1 Regulation of Cellular Growth Division, Molecular Genetics, The National Cancer Institute, Building 560, P.O. Box B, Room 22-12, Frederick, Maryland 21702 Key Words: aging; protein trafficking; Alzheimer’s disease; trans-Golgi network, TGN; endoplasmic reticulum, ER; ubiquitin; amyloid; precursor protein; -amyloid; presenilin; Notch; furin; tau; axonal; somatodendritic; glycosyltransferase; adaptor; vesicle; trafficking; protein transit; protein sorting phosphoinositides. The current review focuses upon recent advances concerning the interrelationship between the ER and the trans-Golgi network (ER–TGN), the ER and the nucleus (ER–nucleus), and the ER– ubiquitin–proteasomal pathways at the level of basic cell biology. The overall emphasis of this paper centers upon the high likelihood that measurements of ER-associated protein or gene expression levels are not representative of a strict ER alone phenotype. Rather, that ER phenotype reflects a synthesis of phenotypes derived from intracellular compartments and phosphorylated messengers in rapport with the ER. The ER–TGN, ER–nuclear, and ER– ubiquitin–proteasomal transit paths share the ability to feed into the decision of whether TGN vesicles can interact with specific phosphorylated residues in order to drive physiologic, constitutive, anterograde traffic, retrograde traffic, and degradation. TGN vesicles can: (a) traffic to endosomes versus plasma membrane phosphodomains depending upon the presence or the absence of select Golgi-localized gamma-ear containing ADP ribosylation factor-binding proteins and/or protein kinase D; (b) be maintained within the TGN in the presence of a phosphosorting acidic cluster motif adaptor; (c) transit back to the ER via specialized TGN/ER glycosyltransferases (which modulate phosphorylated proteins); (d) transit to the nucleus via phosphatidylinositol-4-kinaseassociated phosphodomains; and/or (e) retrotranslocate to the ubiquitin–proteasome pathway, which is equipped with E3 ligase potential, in order to further regulate endosomal versus plasma membrane traffic. The TGN is also a critical gateway for protein transit in the sense that, as a function of sorting within this compartment, proteins are sent to the axon, cell body, or dendrites. As the decision to sort to the axon versus the somatodendritic compartment is intimately tied to TGN function, future understanding of TGN biology at the levels of neurogenesis and protein sorting is predicted to also effectively increase our understanding of synaptic sorting/regulation. © 2002 Elsevier Science (USA) 1 SECTION I (Fig. 1) Endoplasmic Reticulum (ER)–Intracellular Organelle Contiguity The stimulation of intracellular organelle cross-talk stems largely from the endoplasmic reticulum (ER). Hence, ER, ER-contiguous, and ER-derived compartments each serve integral roles in the overall maintenance of physiologic integrity. However, how ER–vesicular protein delivery is modulated by the molecular phenotypes associated with ER-reciprocal compartments such as the trans-Golgi network, the nucleus, and the ubiquitin–proteasomal system remain questions that are less well understood. Protein transit “shuttles” have been defined simply as membrane-bound entities (vesicles) that transit to and fro between reciprocal intracellular organelle compartments. However, upon careful inspection of the reciprocity that typifies intracellular organelle transport, it is apparent that trans-acting factors that modulate DNA control circuitry define the ER shuttle activities that are responsible for the modulation and expression of intercellular and intracellular vesicles. Both membrane-associated and membrane-independent activities enable the ER to meet the numerous physiologic demands placed upon the whole eukaryotic cell. Whether vesicles are guided or targeted by a transmembrane or cytoplasmic adaptor protein, a ligand, an enzyme, or another molecule that may, for instance, fine-tune transcriptional activity, it is the convergence of these molecular influences that clarifies vesicular messages. E-mail: [email protected]. Fax: (301) 846-1666. 9 0014-4827/02 $35.00 © 2002 Elsevier Science (USA) All rights reserved. 10 T. L. TEKIRIAN FIG. 1. Identification of specific TGN adaptors may elucidate ties between molecular motors involved in both early secretory transit and axonal versus somatodendritic sorting. The feed-forward, anterograde transport of ER vesicles is associated with the routing of proteins to the Golgi, the TGN, and/or the plasma membrane. Given the fact that glycosyltransferases, such as GalT, can recycle between the TGN and the ER, glycosylation may regulate nerve terminal development as a function of recycling GalT between these compartments. The TGN itself is associated with resident adaptor activities such as those imparted by gamma-ear containing ADP-ribosylation factor binding proteins (GGAs), protein kinase D, and the phosphofurin–acidic cluster sorting adaptor protein termed PACS-1. GGAs impart TGN vesicles the ability to transit to endosomes; PKD is a core regulator of TGN to plasma membrane transport, while PACS-1 directs the localization of furin—a secreted endoprotease that catalyzes a wide array of both pathogenic and nonpathogenic proprotein substrates. Overall, the recent identifications of these TGN adaptors combined with the fact that the TGN is responsible for shunting membrane proteins into selective transport vesicles destined for axonal versus somatodendritic compartments now provides a framework with which to explore early secretory pathway regulation as tied to axonal, cell body, dendritic, and somatodendritic sorting (Section 1). The Trans-Golgi Network: Gateway of Physiologic Intracellular Organelle Transit The feed-forward, anterograde transit of vesicular proteins within the early secretory pathway has long been established to involve ER to Golgi and trans-Golgi network (TGN) to plasma membrane trafficking. By definition, the TGN is a tubulovesicular compartment that neighbors the trans-cisterna of the Golgi and is functionally distinct from the Golgi. The role of the TGN as a source of exosomes that transit to the plasma membrane, in order to provide a vesicular pool for constitutive endocytosis, is a well accepted function of this compartment. However, in addition to this function, recent observations support new functions that have been accorded to this compartment, providing the opportunity to further define the full extent of TGNmediated participation in transit regulation. First, the TGN clearly associates with resident adaptor molecules and activities [i.e., Golgi-localized gamma-ear containing ADP ribosylation factor binding proteins (GGAs), protein kinase D, furin, PACS-1] that regulate whether proteins are to be kept within this compartment versus being shunted to the plasma membrane for the ultimate purpose of constitutive endocytosis or targeted to the endosomal/lysosomal system for hydrolytic digestion. Next, the TGN has recently gained attention as an organelle that shuttles glycosyltransferases to and from the ER. Also, the TGN appears to share transit molecule features that have also been ascribed to the nucleus, suggesting potential links between these two compartments. Last, the TGN serves as the critical relay station for protein sorting to somatodendritic versus axonal compartments [1], wherein the decision to sort/transport a given protein from the TGN to the axon, cell body, or dendrite may heavily impact upon synaptic targeting. TGN-Specific Adaptors Whether the locale of TGN-derived vesicles serves as a barometer of cellular trafficking versus mistrafficking is not established. We know for certain that vesicles sent from the ER through the Golgi apparatus to the TGN can be shuttled to the plasma membrane or the endosomal/lysosomal system. In addition, it is certainly clear that vesicles that reach the TGN can undergo retrograde transport back to the ER (i.e., as has been classically defined for Shiga and ricin toxins [2]) or can be sent further back from the ER to the proteasome for degradative proteolysis via the process of dislocation. However, the identities of the core regulators that selectively retain versus export TGN proteins to the plasma membrane versus endosomes have remained unidentified for several years. Golgi-localized gamma-ear containing ARF binding protein (GGA) molecules have recently been isolated as signaling molecules that impart TGN vesicles the ability to transit to endosomes (Bonafacino laboratory [3, 4]). TGN GGAs, molecules which are conserved across yeast and humans, contain an N-terminal VHS domain [4] that allows for phosphoinositide binding. GGA proteins are also N-terminally myristoylated, suggesting an affinity for membrane anchorage. In addition, the N-terminus of GGA proteins binds to a cytoplasmic tail dileucine motif that is characteristic of transmembrane proteins that are destined for the endosomal/lysosomal compartment. The cloning of a dominant-negative GGA construct that cannot be incorporated into TGN clathrin vesicles due to the lack of a clathrin hinge (GGAs are directly tied to clathrin recruitment and are ARF-dependent clathrin adaptors) will now enable the TGN AND THE EARLY SECRETORY PATHWAY evaluation of impairment of egress from the TGN to endosomes. While GGA proteins appear to play a role in the regulation of TGN vesicular egress to endosomes, protein kinase D (PKD) has recently been identified as a molecule which critically regulates TGN vesicular transport to the plasma membrane (Malhotra laboratory [5, 6]). PKD, a cytosolic Ser/Thr kinase interacts with both type II PI4 and PI4P5 kinases, and its recruitment to the TGN has been proposed to require diacylglycerol (DAG). The kinase-inactive form of PKD, a lysine/asparagine mutant (PKD-K618N), has been shown to localize to the TGN (colocalization with TGN46) and imparts extensive tubulation [5]. PKDK618N containing tubules indicate a lack of detachment from the TGN and, in turn, an inhibition of cargo transfer between the TGN and plasma membrane. This particular PKD mutant lacks clathrin I and COPI coats, possibly indicative of the non-clathrin-coated/ granular vesicular pool that is destined for delivery to the cellular surface or extracellular space. Overall, this PKD-K618N construct is completely selective for TGN to plasma membrane transport (as protein transport from the ER to the late Golgi, the TGN to endosomes, and the TGN to the ER remains unaffected by its presence). As the Bonifacino laboratory’s dominant negative GGA construct impairs TGN vesicle egress to endosomes and the Malhotra laboratory’s inactive PKD precludes cargo transfer from the TGN to the plasma membrane, it will be exciting to learn how the effects of implementing each of these constructs in mammalian systems will yield answers in relation to the question of whether a specific ratio of TGN vesicles is required for a given protein to remain in the TGN and exit in exosomes versus degraded within mammalian cells. In addition to PKD, furin is another molecule that bi-cycles between the plasma membrane and the TGN [7]. Whether furin is retained in the TGN is at least partially modulated by the phosphofurin acidic cluster sorting adaptor protein (PACS-1). PACS-1 directs the localization of furin to the TGN through connecting the furin cytoplasmic domain to clathrin adaptors and the AP-1 sorting machinery [8]. The facts that furin can exist within the TGN, at the plasma membrane, or between the TGN and early endosomes when dephosphorylated by certain PP2A isotypes [9] adds complexity to the ability to discern whether pro-proteins that are directly (i.e., serum protein pro-von Willebrand factor; pro-nerve growth factor; Notch-1 cell surface receptor; ECM proteins BMP-1, stromelysin-3; bacterial toxin Shiga; viral coat protein cytomegalovirus) or indirectly affected by furin, or TGN proteins with activities that are shifted as a function of phosphorylation, are regulated by mechanisms that are inherent within any (TGN, plasma membrane, or endosomes) or 11 all of these intracellular early secretory pathway cellular compartments. TGN as an Organelle That Shuttles Glycosyltransferases to and from the ER Glycosyltransferases, enzymes that are required for glycolipid and glycoprotein assembly, were formerly thought to reside exclusively within the Golgi. However, the definition of glycosyltransferase localization broadened following the execution of glycoprotein processing studies (pioneered by Nillson and co-workers; [10, 11]) that led to the evaluation of an ER-tagged glucosaminetransferase I that both was retained within ER and relocated mannosidase II. Glycosyltransferases are now understood to reside in both the ER and Golgi, suggesting that the ER produces a population of vesicles for the purpose of recycling between these compartments. Glycosylation can also affect phosphorylated proteins that regulate growth cone migration and protein traffic within nerve terminals. The capacity to retrieve escaped ER proteins has been shown to extend to the trans-most cisterna of the Golgi stack [12, 13], as evidenced by the ability to detect KDEL-tagged glycopeptides within the transcisterna of the Golgi. KDEL-tagged proteins were previously thought to traffic to the Golgi but not to the TGN. However, evidence that supports TGN capture of escaped ER residents suggests the existence of a highly selective pathway between these two compartments. Protein overload between the TGN and ER compartments can result in microtubule depolymerization and galactosyltransferase (GalT) scattering [14]. The existence of shared glycosyltransferases within the TGN and ER (i.e., GalT) suggests that these enzymes may also serve to regulate TGN to cell surface vs TGN to endosomal protein traffic. However, whether a pool of TGN/ER glycosyltransferases overlaps with a TGN pool of GGA vesicles, PKD vesicles, or furin/PACS-1 vesicles for the purpose of coordinate regulation remains unestablished. SECTION II (Fig. 2) The TGN, ER, and Nucleus: Potential Links As mentioned before, there appears to be potential for direct transit between specialized TGN–ER vesicular populations. On another level, molecules that were formerly believed to localize strictly to the ER, nuclear envelope, or cytosol are currently found to localize to nuclear subdomains. A few examples of moieties which have now been localized to the nucleolus or nucleus, include protein disulfide isomerase (PDI), lamins, and the translational factors eIF4A, eIF5A, eIF6, and ETF1 [15, 16]. Moreover, recent data support the localization of phospholipids within the nucleus, rather than 12 T. L. TEKIRIAN protein recruitment, has recently been advanced as a ligand that stimulates PtdIns(4,5)P2 production. Of relevance to protein transit, PtdIns(4,5)P2 is critical for the docking of secretory vesicles and requires PI4 kinase for its synthesis. ARF1, a small GTPase that has been implicated in vesicular coat assembly [23], has been shown to mediate PI4 kinase recruitment and stimulation of PtdIns(4,5)P2 on the Golgi complex [24]. Collectively, the interaction of TGN protein kinase D with PI4 kinase, a link between the TGN and nuclear PLD-associated PA production, and the need for PA to stimulate PtdIns(4,5)P2 via PI4 kinase suggest that TGN and nuclear protein transit machinery are intimately tied to phosphoinositide metabolism. FIG. 2. Molecular parallels between the TGN and the nucleus suggest the existence of phosphoinositide coregulation within these organelles. To date, both the TGN and the nucleus are characterized by the presences of (a) the consensus HEAT motif found in clathrin adaptor and COPI coatomer subunits in the TGN and nuclear TIP120 (a global enhancer of transcription), nuclear import protein importin-, the nuclear huntingtin protein, elongation factor-3, as well as microtubule-associated proteins; (b) phospholipase D (PLD), a molecule that is strongly activated by the small GTPase ARF1 hydrolyzes activated phosphatidylcholine into phosphatidic acid (PA); both PLD and PA are found selectively within the TGN and the nucleus; (c) last, P1(4,5)P2, a molecule that docks secretory vesicles and requires PI4 kinase for its synthesis, is situated in both the TGN and the nucleus. The reciprocity between phosphoinositol signaling molecules that appear to reside exclusively within the TGN and the nucleus suggests that the TGN and nucleus, in tandem, are intimately tied to the regulation of phosphoinositol metabolism in the context of protein transit (references within Section 2). within the nuclear envelope [17]. In essence, the assumption that transcription and translation are spatially separated between the nucleus and cytoplasm in eukaryotes is being rethought [18]. At least two potential ties between the TGN and the nucleus have been raised within the literature. First, both clathrin adaptor and COPI coatomer subunits, key elements of vesicular assembly, contain a consensus motif (HEAT repeat) that is also found within the TBP-associated TIP120 protein, a global enhancer of transcription [19]. HEAT repeats have also been identified within the nuclear import protein importin- [20], the nuclear huntingtin protein, elongation factor 3, as well as microtubule-associated proteins. Such analyses [19] suggest a link between chromosome dynamics and TGN scaffolds. Next, phospholipase D, a molecule that is activated by the small GTPase ADP ribosylation factor 1 (ARF1) and is responsible for the hydrolysis of phosphatidylcholine in order to generate phosphatidic acid (PA) [21], localizes to both the trans-Golgi network and the nucleus [22]. PA, which functions at the level of coat Phosphoinositide Signaling Molecules and Phosphodomains within Nuclei and the TransGolgi Network as Potential Substrates for the Modulation of Gene Expression In mammals, the main phosphokinase that has been identified within the TGN is PI4 kinase (PI4K (the Saccharomyces cerevisiae equivalent of PI4K is termed Pik1 [25])). Phospholipid transfer proteins such as sec14 (yeast) [26, 27] and PITP (mammals) are involved in PtdIns(4)P generation, while stt4 and pik1p are Pik1 isoforms that are essential for yeast cell growth [28, 29]. However, at this juncture, the mammalian PI4 kinase isotypes that correspond specifically to stt4 and pik1p remain unidentified. An association of Pik1 with the TGN has been established by virtue of Pik1 recruitment by FRQ1 (a homologue of the mammalian neuronal calcium sensor 1 family member frequenin) [25]. FRQ1 recruitment of PI4K to the Golgi membrane and the co-immunoprecipitation of Pik1/ PI4K with ARF1 suggest a role for PI4K/ Pik1 in the maintenance of TGN and Golgi integrities. The fact that TGN-localized PI4K/Pik1 serves as the enzyme that allows for the formation of PtdIns(4,5)P2, combined with the observation that PtdIns(4,5)P2 localizes to novel nuclear subdomains (phosphoinositide signaling in the nucleus has been implicated in pre-mRNA processing [30]) may functionally tie the TGN PI4K enzyme to the PtdIns(4,5)P2 substrate that is situated in both the TGN and the nucleus. Taken together, findings which support PI4K coimmunoprecipitation with ARF1, PtdIns(4,5)P2 stimulation by PI4K recruitment, phospholipase D recruitment by ARF1, and PLD colocalization with PI(4,5)P2-positive nuclear subdomains suggest coordinate transit by phosphoinositide shuttles between these compartments. The identification of shared phosphoinositide signaling molecules and phosphodomains within the TGN and the nucleus raises the question of whether entities such as PI4K and PI(4,5)P2 exist within these compartments for the purpose of associ- TGN AND THE EARLY SECRETORY PATHWAY 13 ating with dynamic and transient rounds of nuclear transcription that are coupled to given rounds of phosphorylation and dephosphorylation. Conceivably, rates of transcriptional initiation by nuclear phosphoinositide shuttles would be tied to transcription factor turnover in that cycles of transcriptional initiation linked to a single event of phosphorylation and dephosphorylation are not considered stably on during gene activation but dynamically reverberate between on and off states during phosphorylation/dephosphorylation events [31]. As an aside, the phosphatidylinositol 4-phosphate-5kinase pathway is also essential for Rac-dependent actin assembly [32]. Given that the regulations of select G-proteins (such as Rho and Rac), phosphoinositides, and the actin cytoskeleton are central to understanding malignancies [33], future knowledge gained in relation to how cytoplasmic versus nuclear PI kinases regulate basic transit between the nucleus, TGN, and plasma membrane will also likely advance an understanding of cancer-associated protein trafficking. SECTION III (Fig. 3) A Newly Identified Function of Ubiquitin as a Modulator of Transcription May Serve to Directly Modulate Signal Integrity between the ER and the Proteasome Proteins that are destined for early secretory pathway processing undergo folding and assembly in the ER lumen. During this process, misfolded proteins pass through the translocon pore on the cytosolic surface of the ER and are sent through the cytosol for dislocation to the 26S proteasome, presumably for degradation. The 26S eukaryotic proteasome ATPase complex (20S proteolytic core and two 19S regulatory complexes) has been identified as the major scavenging/ degradation pathway for a vast number of eukaryotic nuclear and cytoplasmic proteins [34]. In higher eukaryotes, the subcellular localization of the proteasome is mainly nuclear and cytoplasmic, whereas in yeast, the nuclear envelope– endoplasmic reticulum network and nuclear periphery are predominant sites of 26S proteasome action [35]. The 26S proteasome is responsible for the breakdown of not only abnormal and damaged, misfolded proteins, but also cell cycle regulators (mitotic regulators, G1 cyclins), tumor suppressors (c-jun, c-fos, c-mos, E2A proteins, p53), oncogenes, antigens, and shortand long-lived secretory proteins [36]. Proteins that are not eliminated by virtue of ubiquitin–proteasome breakdown are degraded within the lysosomal system. The process of conjugating ubiquitin (Ub) to lysine residues of a target protein (ubiquitylation) involves FIG. 3. A new role for ubiquitylation suggests a possibility for Ub–ER–nuclear versus Ub–ER–proteosomal pools. As determined by the fact that Ub-mediated proteolysis is not required for transcriptional activation, the process of ubiquitylation itself has been ascribed a new function—that of a transcriptional modulator [43]. This finding raises the question of whether two distinct, non-overlapping vesicular pools play a role in the cell’s decision to (a) modulate ER–nuclear gene expression versus (b) dislocate a given protein from the ER to cytosol to the proteasome for degradation (degradative proteolysis). How a Ub–ER–nuclear shuttle versus a Ub–proteasomal shuttle may differentially regulate ER/TGN/plasma membrane/ endosomal signaling is a newly emerging field of study. However, it is already clear that Ub ligase (i.e., c-cbl) can modulate plasma membrane versus endocytic sorting [44]—thus providing preliminary evidence for ER ubiquitylation, ER–TGN– endosomal versus ER–TGN–plasma membrane intracellular sorting rapports (Section 3). Ub-activating enzymes (termed E1 enzymes), Ub-conjugating enzymes (E2), and Ub-ligating enzymes (E3). E3 ligases recognize a given degradation signal (a degron) within an acceptor protein and serve as potent regulators of ubiquitin timing and substrate selection. Salghetti and colleagues [37] have observed the fact that sequences that activate transcription [transcriptional activation domains (TADs)] and signal degradation (“degrons”) functionally overlap. Such overlap exists, for instance, in the cases of myc, jun, fos, myb, -catenin, HIF-1␣, E2F-1, p53, rel, and GCN-4 sequences). The presence of Ub has been equated with disease-associated phenotypes based upon its established ability to tag and target proteins for proteasomal proteolysis. A few examples of ubiquitin ties to neuropathologic conditions include Ub-positive polyglu- 14 T. L. TEKIRIAN FIG. 4. The TGN serves as a core modulator of Alzheimer’s disease molecular protein transit. A compilation of evidence supporting a central role for the TGN in the course of AD pathophysiology is provided in Table 1 and depicted above. These lines of evidence, combined with new knowledge concerning TGN adaptor function relative to those functions imparted by contiguous early secretory pathway transit sites (Figs. 1–3) suggest that (a) the regulation of APP via the ␥-secretase action of presenilin(s) likely commands a need to understand whether furin is cleaved within the TGN versus the plasma membrane (whether these decisions are modulated by PACS-1, GGAs, or PKD in the case of PS and APP is yet to be determined). (b) Titration of TGN glycosylation of PS-binding partners that prove essential for PS activity is predicted to ultimately regulate the equilibrium of proper axonal (i.e., tau) vs somatodendritic (microtubule-associated protein) sorting. (c) Last, recycling of AD-associated proteins that are found in both the TGN and the ER may very well be tied to phosphorylationdependent cycles of on– off transcription that are modulated by TGN/nuclear-selective phosphoproteins, TGN/nuclear phosphorylationdependent activities (i.e., those imparted by PLD, PI4K- and PI4,5P2), and shared TGN and nuclear (i.e., HEAT) motifs (Section 3). tamine protein inclusions [38], huntingtin protein inclusions [39], ubiquitin-positive Alzheimer’s disease presenilin protein oligomers [40, 41], and the association of autosomal-recessive juvenile parkinsonism with a causative gene that encodes an E3 ligase [42]. While the ubiquitin–proteasome pathway is the major degradative pathway for most proteins, why or whether the presence of ubiquitin would be linked exclusively to degenerative phenotypes has remained unclear. Quite recently [43], ubiquitin has been ascribed a new function, one which supports a function for Ub as a transcriptional modulator. Specifically, Salghetti and colleagues assessed how ubiquitylation regulates transcription factor activity. These investigators evaluated a known herpes simplex virus (VP16) TAD degron fused to a Lex-A DNA binding domain in contrast to myc and yeast G1 cyclin Cln3 TAD degrons (each also fused to Lex-A binding domains). The results of this study indicate that a Met 30 residue is required for VP16 transactivation and that the evaluated VP16 – Lex-A fusion (but not the myc or Cln3 fusions) was unable to activate transcription in the absence of Met 30. These data indicate that ubiquitylation is required for VP16 transactivator function and reveal that the degron function of the VP16 TAD is intimately tied to an ability to activate transcription. Overall, this work demonstrates that Ub-mediated proteolysis is not required for transcriptional activation. This newly ascribed function of Ub as a transcriptional activator, in the absence of Ub-mediated proteolysis, raises the question of whether the appropriate recruitments of Ub-activating, -conjugating, and -ligat- TGN AND THE EARLY SECRETORY PATHWAY 15 TABLE 1 Central Connections between Alzheimer’s Disease Molecules and Trans-Golgi Network (TGN) Protein Localization, Modification, or Transport 1. Furin localizes in the TGN [48, 49]. 2. Requirement of furin to activate -site amyloid precursor protein-cleaving enzyme (BACE) [50–52]. 3. BACE1 localizes to the TGN and binds to nicastrin (a molecule which interacts with PS and is required in order to impart ␥secretase activity) [53]. 4. Cofractionation of PS N- and C-terminal fragments with the trans-Golgi network enzyme galactosyltransferase [54, 55]. 5. PS1 and PS2 interact with Rab 11 (a TGN-associated G protein) [56]. PS1 is a membrane receptor for Rab GDI, part of the GTPase molecular switch apparatus that regulates vesicular transport (GDI extracts GDP-bound rab from membrane and deposits it into cytoplasm) [57]. 6. Co-immunoprecipitation of clathrin-coated vesicles [CCVs] with adaptin and PS1 [58]. 7. Localization of mature APP and APP C-terminal fragments with CCVs [59]. 8. NPX Y-targeting motif within APP, which supports its transit to the TGN [60]. 9. Competition for ␣- and -secretase cleavages of APP, within the TGN [61]. 10. APP destined for -secretase processing is sorted into a distinct trans-Golgi or endosomal compartment prior to transport that is mediated by rab 6 (G-protein localized to post-Golgi, trans-Golgi cisternae, and TGN) [62]. 11. Localization of highly abundant -amyloid species to the TGN [63–67]. 12. Estrogen reduces A generation through the stimulation of TGN–vesicle biogenesis [67]. ing enzymes are tied to transcriptional modulation versus degradative proteolysis in the context of regulating signal integrity in protein traffic. A role for ubiquitin as a transcriptional regulator also raises the issue of whether there are two distinct ER– ubiquitin vesicle pools. One vesicular pool could conceivably play a role in the cell’s decision to dislocate a given (mammalian) protein from the ER through cytosol to the proteasome for degradation in contrast to a separate pool that selectively shuttles molecules between the ER and the nucleus in order to modify gene expression. The new link of ubiquitin to transcriptional activation raises the question of whether Ub pathway components ascribed to the degradative, Ub-mediated proteolysis versus ubiquitin-mediated transcriptional activation pathways differentially control nuclear, ER/ TGN/plasma membrane signaling decisions. Recently, a specific E3– ubiquitin ligase, c-cbl, has been associated with an ability to ubiquitinate the EGF receptor at the plasma membrane and remains associated with the receptor throughout the clathrin-mediated endocytic pathway [44]. The role of c-cbl as a Ub ligase that modulates endocytic versus plasma membrane sorting further supports the concept that ER– ubiquitin, ER– TGN– endosomal, and ER–TGN–plasma membrane intracellular sorting rapports are indeed linked. The ability of the ER to respond to a variety of insults [whether responding to hypoxia, hypoglycemia, protein aggregation (insolubility, misfolding), or overexpression] is clearly tied to a capability to adapt to secretory apparatus demand. In the context of normal development, ER-responsive pathways modulate gene expression levels and protein folding machinery in order to impart physiologic conformational protein folding. Physiologic protein folding has been equated with fluid, feed-forward anterograde transport that is not associated with misproteolysis or nonphysiologic, aberrant, degradation signals. However, cell routes that have previously been considered ER stress paths are now recognized as shared with signaling paths that are implicated in normal development (i.e., in the case of apoptosis). In light of a propensity for ER-responsive pathways to be connected with both normal developmental and misfolded protein response, it is not a stretch of the imagination to add Ub tagging to the repertoire of modulators of both normal developmental transcriptional regulation and proteolytic degradation. For years, the pathophysiologies of disorders that are typified by protein aggregation (for instance, Huntington’s disease, familial Parkinson’s disease, lipofuscinosis, macular degeneration, Alzheimer’s disease) have been equated with the concept that extracellular protein aggregates serve as a focal initiator of disease. However, it is now apparent that inter- and intracellular organelle transit and vesicular constitution (rather than simply the extrusion of protein into the extracellular matrix) gauge the eukaryotic cell’s decision to regulate whether a given protein or lipid is shuttled through traditional, constitutive transport versus degraded. Whether the regulation of functional protein trafficking versus mistrafficking is regulated mainly by (a) phosphoinositide signal transduction, (b) phospholipid composition, (c) organelle vesicular phosphodomain function, (d) phosphoadaptor proteins, (e) affinity versus avidity of binding between vesicles that oscillate between these various phosphorylated entities, or (f) a capacity for phosphoinositides themselves to serve as signals that shape whether cell surface receptors will be further modified remains to be seen. 16 T. L. TEKIRIAN Alzheimer’s Disease: Molecular Genetics, APP, and The Presenilins: Connectivity of Alzheimer’s Disease Molecules/Molecular Processes and Trans-Golgi Network Protein Localization, Modification, and/or Transport Studies of individuals who are affected by familial (inherited) Alzheimer’s disease (FAD) provide essential genetic clues that enhance the understanding of both inherited and sporadic (presumably noninherited) forms of this disorder. Three genes serve as critical regulators of inherited AD pathophysiology. One of these genes encodes the amyloid precursor protein (APP), another encodes the polytopic, seven-transmembrane spanning presenilin 1 protein (PS1), and a third encodes the presenilin 2 protein (PS2; PS2 is 67% identical to the PS1 sequence at the amino acid level) (for reviews, please refer to [41, 45]). According to co-immunoprecipitation studies, APP and the presenilins (PS) interact with one another [46]. While the function of APP remains elusive, presenilin has recently been ascribed an enzymatic activity termed “gamma (␥-) secretase activity.” ␥-Secretase activity [47] liberates the C-terminus of the -amyloid peptide that is typically sequestered within APP (in the absence of ␥-secretase cleavage) and (either directly or indirectly) imparts an elevation in -amyloid x-42 (Ax-42) peptide levels. Increased levels of Ax-42 protein are a common neuropathologic hallmark within brains and cerebrospinal fluid of those affected by either sporadic or familial AD. Another hallmark type of AD pathology is the “neurofibrillary tangle,” an intracellular deposit that is composed of axonal tau protein (“paired helical filaments”) and dystrophic neurites (neuritic debris). How and whether the genesis of Ax-42 (deposition begins in higher cortical regions) within AD brain is tied to tau protein genesis (deposition beings in the entorhinal cortex) remains unclear. Each APP and the presenilins undergo proteolysis. While it is clear that each of these molecules is subject to multiple cleavages, the physiologic relevance of such cleavage events remains unelucidated. APP undergoes maturation within the early secretory pathway, is subject to posttranslational modifications within the ER and trans-Golgi compartments, and is thought to undergo constitutive recycling at the cell surface. While a physiologic explanation for PS endoproteolysis is as yet unestablished, furin has been shown to regulate both PS and Notch (a molecule that serves a critical role in the developmental regulation of cell fate) activities. Alzheimer’s disease-associated questions that directly relate to the function of the TGN, which remain unaddressed experimentally, include (1) what are the subcellular regulators of mechanisms that account for whether or not presenilin is cleaved by furin within the TGN vs at the plasma membrane? It may be possible that the presenilins may sometimes reside at the cell surface and, at other times may not, depending upon whether furin resides within the TGN versus at the plasma membrane, endosomes or potentially, ubiquitin-ligase containing vesicles that may facilitate ectodomain-shedding and degradation. (2) How do specific TGN adaptor proteins modulate the ␥-secretase activity complex components PS and nicastrin? The modulation of a balance between glycosylation of APP and presenilin-interacting proteins (and resultant constitutive plasma membrane processing) in contrast to the decision to degrade the presenilins/presenilin-interacting proteins through a TGN to ER to proteasomal path may be one mode through which ␥-secretase activity is regulated. (3) How do the regulations of furin and ␥-secretase activity within the trans-Golgi network vs the plasma membrane impact the genesis of specific -amyloid and tau isoforms? The possibility that TGN sorting to the somatodendritic versus axonal compartments titrates the degree of intracellular tau versus intra- versus extracellular A manufactured by a given cell is certainly one possibility. As we carefully digest sapient contributions as ebb tides imparted by those who study protein transit and disease, we draw nearer to threading the many puzzles once thought intangible. 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