TABLE 2.S. Relative proportion and prevalence of higher taxa (genus or higher taxon) in apical and coronal samples
of endodontically infected roots.
Domain
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Phylum
Firmicutes
Actinobacteria
Firmicutes
Actinobacteria
Bacteroidetes
Firmicutes
Firmicutes
Bacteroidetes
Firmicutes
Fusobacteria
Firmicutes
Bacteroidetes
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Spirochaetes
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Firmicutes
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Bacteroidetes
Final taxon
Lactobacillus
Actinomyces
Streptococcus
class Actinobacteria
Prevotella
Parvimonas
Pseudoramibacter
order Bacteroidales
fam. Veillonellaceae
Fusobacterium
Peptostreptococcus
Porphyromonas
Fam. Lachnospiraceae
Mogibacterium
Eubacterium
Propionibacterium
Treponema
Fam. Syntrophomonadaceae
Selenomonas
Anaerovorax
Parascardovia
Filifactor
Neisseria
Oribacterium
Fam. Peptostreptococcaceae
phylum Firmicutes
Moryella
Corynebacterium
Fam. Prevotellaceae
Total
%
10.7
11.9
4.5
12.8
7.8
4.4
4.9
3.6
3.2
1.9
2.4
1.3
0.8
2.2
1.9
1.2
1.2
1.4
1.4
1.6
0.8
1.5
0.5
1.1
0.3
0.8
0.7
0.9
0.3
N
total
46
46
46
46
46
44
44
45
46
45
30
45
46
41
45
44
44
39
45
44
24
33
36
41
44
40
32
45
44
Avg%
Apical
14.3
11.9
8.4
6.9
6.1
3.4
3.0
2.7
2.5
2.0
2.0
1.8
1.6
1.6
1.5
1.3
1.3
1.2
1.2
1.1
0.9
0.9
0.9
0.9
0.8
0.8
0.7
0.7
0.7
sd
Apical
15.1
18.8
10.9
13.1
10.9
4.7
4.9
3.9
2.5
2.8
3.9
1.7
1.4
2.8
2.2
2.0
1.6
1.8
1.4
1.4
1.8
2.1
2.5
1.3
1.3
1.8
2.1
1.0
0.7
N
apical
23
23
23
23
23
21
22
23
23
23
17
23
23
21
23
22
22
20
22
22
12
17
21
20
22
22
15
22
22
Avg%
Coronal
9.0
17.7
5.5
8.8
6.1
4.1
4.0
3.7
3.2
2.2
1.6
1.1
0.7
2.2
2.3
1.2
1.2
1.6
1.5
2.0
0.7
1.5
0.8
0.7
0.4
0.7
0.3
1.3
0.2
sd
Coronal
13.5
20.8
9.5
16.1
10.1
8.0
6.1
5.4
2.9
2.3
3.3
1.2
0.7
3.6
2.8
1.8
1.6
2.4
2.3
1.9
2.0
4.6
2.4
1.3
0.4
1.2
0.4
3.5
0.3
N
Coronal
23
23
23
23
23
23
22
22
23
22
13
22
23
20
22
22
22
19
23
22
12
16
15
21
22
18
17
23
22
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Unknown
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Fusobacteria
Actinobacteria
TM7
Firmicutes
Bacteroidetes
Actinobacteria
Firmicutes
Firmicutes
Actinobacteria
Actinobacteria
Bacteroidetes
Actinobacteria
Proteobacteria
Actinobacteria
Proteobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Firmicutes
Firmicutes
Actinobacteria
Firmicutes
Firmicutes
Cyanobacteria
Enhydrobacter
Anoxybacillus
Fam. Ruminococcaceae
Fam. Erysipelotrichaceae
Leptotrichia
Collinsella
cand. division TM7
Granulicatella
Bacteroides
Bifidobacterium
Unknown
Faecalibacterium
Dialister
Actinobaculum
Fam. Bifidobacteriaceae
phylum Bacteroidetes
Fam. Coriobacteriaceae
Desulfobulbus
Rothia
Shigella
Olsenella
Acidovorax
Acinetobacter
class Alphaproteobacteria
order Clostridiales
Subdoligranulum
Enterococcus
order Actinomycetales
Johnsonella
Staphylococcus
Scardovia
Bulleidia
Shuttleworthia
phylum Cyanobacteria
0.2
0.2
0.2
0.6
0.4
0.2
0.9
0.3
0.2
0.3
0.2
0.1
0.4
0.7
0.2
0.4
0.6
0.3
0.2
0.1
0.3
0.1
0.1
0.1
0.2
0.1
0.1
0.1
0.1
0.1
0.3
0.3
0.2
0.1
34
31
42
38
42
39
44
26
37
26
45
31
28
31
28
18
36
27
27
29
21
33
31
26
44
31
32
24
30
28
19
26
28
24
0.7
0.6
0.6
0.6
0.5
0.5
0.5
0.5
0.5
0.4
0.4
0.4
0.4
0.4
0.4
0.3
0.3
0.3
0.3
0.3
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.2
0.7
0.8
0.8
0.9
0.8
0.7
0.7
1.5
0.9
0.7
0.5
0.4
0.7
0.8
0.9
1.4
0.7
0.8
0.7
0.3
0.7
0.3
0.2
0.4
0.3
0.2
0.3
0.6
0.4
0.2
0.5
0.4
0.3
0.3
17
17
21
20
21
19
22
15
19
13
23
17
13
15
15
9
17
12
15
17
10
18
18
16
22
19
18
10
15
16
10
13
15
16
0.2
0.2
0.2
0.5
0.5
0.2
1.3
0.7
0.1
0.2
0.3
0.1
0.2
1.2
0.1
0.2
0.5
0.3
0.2
0.05
0.2
0.1
0.1
0.1
0.2
0.1
0.1
0.3
0.2
0.1
0.4
0.3
0.2
0.04
0.3
0.5
0.3
1.4
1.2
0.3
2.6
2.0
0.2
0.3
0.4
0.2
0.4
3.2
0.4
0.6
1.5
0.5
0.5
0.1
0.5
0.3
0.3
0.2
0.1
0.1
0.1
0.9
0.3
0.2
1.4
1.0
0.4
0.1
17
14
21
18
21
20
22
11
18
13
22
14
15
16
13
9
19
15
12
12
11
15
13
10
22
12
14
14
15
12
9
13
13
8
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
OD1
Proteobacteria
Firmicutes
Thermomicrobia
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Bacteroidetes
Firmicutes
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Actinobacteria
Bacteroidetes
Firmicutes
Bacteroidetes
Firmicutes
Firmicutes
Actinobacteria
Actinobacteria
Proteobacteria
Firmicutes
Bacteroidetes
Cyanobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Proteobacteria
Firmicutes
Campylobacter
cand. division OD1
Haemophilus
Bacillus
phylum Thermomicrobia
order Burkholderiales
Clostridium
Fam. Enterobacteriaceae
Ralstonia
Fam. Comamonadaceae
Capnocytophaga
Dorea
Bradyrhizobium
class Betaproteobacteria
Roseburia
Papillibacter
Turicella
Sporocytophaga
Alkalibacterium
order Sphingobacteriales
Catonella
Mitsuokella
Fam. Propionibacteriaceae
Fam. Brevibacteriaceae
Pseudomonas
Abiotrophia
Uncl. Bacteria
Alistipes
GpIV
Fam. Neisseriaceae
Variovorax
Brachybacterium
Aggregatibacter
Butyrivibrio
0.2
0.05
0.10
0.06
0.18
0.05
0.06
0.05
0.04
0.04
0.13
0.04
0.03
0.04
0.03
0.03
0.03
0.03
0.03
0.02
0.06
0.09
0.25
0.03
0.02
0.04
0.06
0.02
0.03
0.06
0.01
0.02
0.02
0.02
35
28
21
30
25
28
22
27
22
27
33
26
27
23
21
28
27
19
21
20
23
23
20
30
21
18
32
24
20
20
14
20
10
9
0.2
0.15
0.15
0.15
0.14
0.14
0.13
0.12
0.11
0.11
0.11
0.11
0.10
0.10
0.10
0.09
0.09
0.09
0.09
0.08
0.08
0.07
0.07
0.07
0.07
0.06
0.06
0.06
0.06
0.05
0.05
0.05
0.05
0.05
0.2
0.2
0.4
0.2
0.4
0.2
0.3
0.1
0.2
0.1
0.2
0.2
0.2
0.1
0.1
0.1
0.1
0.1
0.1
0.1
0.2
0.1
0.2
0.1
0.1
0.1
0.1
0.1
0.1
0.2
0.1
0.1
0.2
0.1
15
16
11
17
10
16
13
17
14
16
16
16
16
15
14
19
16
13
13
14
11
10
10
17
13
8
17
15
13
9
10
12
3
5
0.2
0.03
0.14
0.08
0.18
0.05
0.01
0.09
0.03
0.02
0.19
0.03
0.02
0.05
0.02
0.02
0.03
0.01
0.03
0.01
0.06
0.06
0.47
0.03
0.01
0.04
0.07
0.02
0.02
0.09
0.01
0.02
0.04
0.01
0.3
0.1
0.4
0.1
0.4
0.1
0.0
0.2
0.1
0.0
0.3
0.1
0.0
0.1
0.1
0.0
0.0
0.0
0.1
0.0
0.1
0.1
1.3
0.0
0.0
0.1
0.1
0.0
0.1
0.2
0.0
0.0
0.1
0.0
20
12
10
13
15
12
9
10
8
11
17
10
11
8
7
9
11
6
8
6
12
13
10
13
8
10
15
9
7
11
4
8
7
4
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Actinobacteria
Proteobacteria
Proteobacteria
Firmicutes
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Proteobacteria
Firmicutes
Firmicutes
Actinobacteria
Firmicutes
Proteobacteria
Firmicutes
DeinococcusThermus
Actinobacteria
Chlamydiae
Proteobacteria
Actinobacteria
Proteobacteria
Actinobacteria
Methylobacterium
Micrococcus
Pelomonas
Serratia
Arthrobacter
Ruminococcus
Atopobium
Stenotrophomonas
Gallibacterium
Brochothrix
Lysobacter
order Lactobacillales
Herbaspirillum
Paracoccus
Peptococcus
Burkholderia
Fam. Oxalobacteraceae
Nesterenkonia
Turicibacter
Hydrogenophaga
class Clostridia
Holdemania
Brooklawnia
Anaerotruncus
class Gammaproteobacteria
Jeotgalicoccus
0.01
0.03
0.01
0.01
0.02
0.02
0.06
0.01
0.01
0.02
0.01
0.03
0.01
0.02
0.03
0.01
0.02
0.01
0.02
0.01
0.02
0.01
0.02
0.01
0.01
0.01
7
24
17
16
27
20
14
21
18
18
12
20
3
12
14
14
18
19
18
8
18
8
8
11
14
16
0.05
0.04
0.04
0.04
0.04
0.04
0.04
0.04
0.04
0.04
0.03
0.03
0.034
0.03
0.03
0.03
0.03
0.03
0.03
0.03
0.03
0.03
0.02
0.02
0.02
0.02
0.2
0.1
0.1
0.1
0.1
0.1
0.1
0.1
0.1
0.1
0.1
0.0
0.15
0.07
0.06
0.05
0.04
0.06
0.05
0.11
0.05
0.06
0.08
0.06
0.04
0.03
5
12
12
12
12
11
9
12
12
13
10
13
3
6
7
10
10
8
10
3
8
6
2
9
9
10
0.001
0.07
0.02
0.003
0.04
0.02
0.05
0.01
0.01
0.01
0.003
0.03
0
0.04
0.05
0.004
0.04
0.02
0.01
0.01
0.02
0.01
0.02
0.003
0.005
0.01
0.0
0.2
0.0
0.0
0.1
0.0
0.1
0.0
0.0
0.0
0.0
0.1
0
0.12
0.11
0.01
0.09
0.03
0.03
0.03
0.04
0.04
0.08
0.01
0.01
0.02
2
12
5
4
15
9
5
9
6
5
2
7
0
6
7
4
8
11
8
5
10
2
6
2
5
6
Thermus
Dietzia
order Chlamydiales
Thermomonas
Microbacterium
Derxia
Slackia
0.01
0.01
0.01
0.01
0.01
0.06
0.03
10
10
8
10
12
15
20
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.05
0.04
0.05
0.04
0.04
0.04
0.03
6
7
5
7
6
7
8
0.01
0.01
0.005
0.003
0.03
0.11
0.03
0.02
0.02
0.01
0.01
0.09
0.28
0.04
4
3
3
3
6
8
12
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
OP3
Firmicutes
Firmicutes
Firmicutes
Proteobacteria
Proteobacteria
Fusobacteria
Proteobacteria
Actinobacteria
Actinobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Bacteroidetes
Bacteroidetes
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Nitrospira
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Sutterella
cand. division OP3
Fam. Clostridiaceae
Lactococcus
Anaerococcus
Cupriavidus
phylum Proteobacteria
Fam. Fusobacteriaceae
Fam. Xanthomonadaceae
order Coriobacteriales
Saccharopolyspora
Nocardioides
Novosphingobium
Comamonas
Fam. Porphyromonadaceae
Chryseobacterium
Eggerthella
Sphingomonas
Rhodoplanes
Aquabacterium
Nevskia
Fam. Intrasporangiaceae
Fam. Eubacteriaceae
Fam. Bradyrhizobiaceae
Delftia
Moraxella
Halomonas
Fam. Lactobacillaceae
Leuconostoc
phylum Nitrospira
Geobacillus
Fam. Pasteurellaceae
Rhodopseudomonas
Fam. Caulobacteraceae
0.01
0.01
0.01
0.01
0.01
0.01
0.00
0.01
0.00
0.02
0.01
0.01
0.00
0.00
0.01
0.01
0.03
0.01
0.00
0.01
0.00
0.00
0.03
0.00
0.01
0.00
0.00
0.01
0.00
0.00
0.00
0.01
0.00
0.00
11
8
7
5
6
11
8
5
8
11
7
7
8
10
9
7
14
12
4
6
4
7
23
4
9
7
6
14
8
5
7
9
5
7
0.02
0.02
0.02
0.02
0.017
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.010
0.01
0.03
0.04
0.04
0.06
0.05
0.04
0.03
0.06
0.03
0.03
0.04
0.05
0.02
0.03
0.03
0.05
0.03
0.02
0.05
0.06
0.05
0.03
0.03
0.05
0.03
0.03
0.03
0.02
0.02
0.04
0.03
0.02
0.02
0.02
9
7
5
3
6
5
7
3
6
5
5
4
7
7
7
4
7
7
3
3
3
5
8
2
3
5
5
7
6
3
6
5
5
5
0.004
0.001
0.01
0.004
0
0.01
0.004
0.003
0.01
0.01
0.005
0.003
0.004
0.01
0.01
0.02
0.02
0.004
0.002
0.02
0.001
0.002
0.04
0.001
0.01
0.001
0.002
0.01
0.002
0.001
0.001
0.01
0
0.002
0.01
0.00
0.02
0.01
0
0.03
0.02
0.01
0.04
0.02
0.02
0.01
0.02
0.03
0.03
0.06
0.08
0.01
0.01
0.06
0.00
0.01
0.04
0.00
0.02
0.00
0.01
0.02
0.01
0.00
0.01
0.04
0
0.01
2
1
2
2
0
6
1
2
2
6
2
3
1
3
2
3
7
5
1
3
1
2
15
2
6
2
1
7
2
2
1
4
0
2
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
OP11
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Bacteroidetes
Proteobacteria
Firmicutes
Bacteroidetes
Actinobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Bacteroidetes
Proteobacteria
Actinobacteria
Firmicutes
Proteobacteria
Bacteroidetes
Proteobacteria
Actinobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Brevundimonas
cand. division OP11
Vibrio
Coprobacillus
Rhizobium
Desulfomicrobium
Curvibacter
Marinomonas
Kurthia
Weissella
Barnesiella
Cardiobacterium
Peptoniphilus
Flavobacterium
Leifsonia
Gardnerella
Xanthomonas
Zoogloea
Diaphorobacter
Haliangium
Anaerofilum
Dolosigranulum
Cloacibacterium
Massilia
Propionicicella
Megasphaera
Tepidimonas
Parabacteroides
class Deltaproteobacteria
Kocuria
Agrococcus
Mesorhizobium
Legionella
Photobacterium
0.00
0.00
0.00
0.01
0.01
0.00
0.00
0.00
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.00
5
5
6
12
9
2
5
5
10
2
3
9
2
3
2
12
3
4
2
1
5
2
4
4
4
2
4
5
8
12
3
5
5
5
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.009
0.009
0.01
0.008
0.01
0.008
0.01
0.008
0.01
0.008
0.008
0.01
0.007
0.01
0.01
0.01
0.007
0.01
0.01
0.01
0.01
0.01
0.006
0.01
0.01
0.03
0.03
0.02
0.02
0.02
0.04
0.02
0.02
0.02
0.04
0.03
0.02
0.03
0.03
0.03
0.02
0.03
0.03
0.03
0.04
0.02
0.03
0.03
0.02
0.02
0.03
0.02
0.02
0.01
0.02
0.02
0.01
0.02
0.02
3
3
4
5
6
1
4
4
7
2
3
4
2
2
2
6
3
2
2
1
3
2
3
3
3
2
3
4
5
4
2
5
2
3
0.01
0.01
0.003
0.02
0.02
0.001
0.001
0.001
0.01
0.05
0.02
0.01
0.06
0.09
0.01
0.00
0.01
0.03
2
2
2
7
3
1
1
1
3
0.02
0.1
5
0.001
0.01
1
0.004
0.01
6
0.01
0.03
2
0.005
0
0.005
0.004
0.002
0.02
0
0.02
0.02
0.01
2
0
1
1
1
0.001
0.001
0.005
0.01
0.01
0.01
0.01
0.01
0.02
0.03
1
1
3
8
1
0.01
0.002
0.05
0.01
3
2
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Actinobacteria
Proteobacteria
Actinobacteria
Actinobacteria
Proteobacteria
Bacteroidetes
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Firmicutes
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Actinobacteria
Proteobacteria
Bacteroidetes
Actinobacteria
Actinobacteria
Proteobacteria
Firmicutes
Actinobacteria
Proteobacteria
Proteobacteria
Tenericutes
Firmicutes
Firmicutes
Planctomycetes
Proteobacteria
Proteobacteria
Actinobacteria
BRC1
Actinobacteria
Renibacterium
Propionivibrio
Conexibacter
Brevibacterium
Desulfovibrio
Niastella
Bilophila
Aeromonas
Fam. Nocardioidaceae
Facklamia
Listeria
Methylobacillus
Megamonas
Naxibacter
Byssovorax
Georgenia
order Alteromonadales
Hymenobacter
Curtobacterium
Aeriscardovia
Amaricoccus
Caryophanon
Fam. Micrococcaceae
Pigmentiphaga
Sphingopyxis
Acholeplasma
Carnobacterium
Veillonella
phylum Planctomycetes
Thiobacter
Dyella
Citricoccus
cand. division BRC1
Fam. Mycobacteriaceae
0.00
0.01
0.01
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.02
0.00
0.00
0.01
0.00
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.00
0.00
0.00
4
10
7
4
4
2
3
5
3
3
4
2
1
1
2
3
3
5
3
5
2
3
7
2
1
3
8
8
3
2
2
1
1
3
0.01
0.01
0.01
0.005
0.01
0.005
0.01
0.01
0.01
0.005
0.005
0.005
0.004
0.004
0.004
0.004
0.004
0.004
0.004
0.004
0.004
0.004
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.02
0.03
0.02
0.01
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.01
0.01
0.01
0.01
0.01
0.02
0.02
0.01
0.01
0.01
0.02
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
2
1
4
4
1
2
2
2
1
2
2
2
1
1
2
3
2
4
2
2
2
2
2
2
1
2
3
2
2
2
2
1
1
2
0.003
0.02
0.005
0.01
0.05
0.01
2
9
3
0.004
0.01
3
0.003
0.02
0.001
0.0003
0.01
0.02
0.04
0.005
0.001
0.03
1
3
2
1
2
0.001
0.001
0.004
0.01
0.007
0.005
0.02
0.06
1
1
1
3
0.0004
0.04
0
0
0.001
0.00
0.01
0.001
0.002
0.2
0
0
0.004
0.01
0.02
0.01
1
5
0
0
1
5
6
1
0.001
0.004
1
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Thermomicrobia
Proteobacteria
Firmicutes
Firmicutes
Actinobacteria
Proteobacteria
Firmicutes
Bacteroidetes
Planctomycetes
Firmicutes
Actinobacteria
Firmicutes
Planctomycetes
Firmicutes
Proteobacteria
Firmicutes
Bacteroidetes
Bacteroidetes
Chlamydiae
Bacteroidetes
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
class Thermomicrobia
Roseomonas
Trichococcus
Acetonema
Serinicoccus
Peredibacter
Aminobacterium
Fam. Flavobacteriaceae
Fam. Planctomycetaceae
Anaerofustis
Fam. Thermoleophilaceae
Coprococcus
Planctomyces
Aerococcus
Fam. Sphingomonadaceae
Exiguobacterium
Gramella
Terrimonas
Rhabdochlamydia
Fam. Bacteroidaceae
Enterobacter
order Pseudomonadales
Bordetella
Alkanindiges
Castellaniella
Rickettsiella
order Bacillales
Klebsiella
Solobacterium
Sporomusa
Jeotgalibacillus
Ramlibacter
Psychromonas
Pseudoxanthomonas
0.00
0.00
0.00
0.00
0.00
0.00
0.02
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.01
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
2
2
2
6
1
1
7
8
4
2
6
3
4
8
3
2
1
1
1
7
4
2
2
2
1
1
2
1
4
3
3
2
2
4
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
2
2
2
4
1
1
2
2
2
2
4
3
2
3
3
1
1
1
1
1
3
1
1
1
1
1
2
1
3
2
2
2
2
1
0.003
0.01
2
0.02
0.01
0.003
0.06
0.03
0.01
5
6
2
0.002
0.01
2
0.001
0.01
0.003
0.01
2
5
0.001
0.007
1
0.01
0.001
0.002
0.002
0.001
0.03
0.003
0.01
0.01
0.004
6
1
1
1
1
0.0005
0.001
0.001
0.002
0.002
0.003
1
1
1
0.004
0.01
3
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Firmicutes
Verrucomicrobia
Proteobacteria
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Firmicutes
Firmicutes
Proteobacteria
Proteobacteria
Firmicutes
Acidobacteria
Tenericutes
Actinobacteria
Verrucomicrobia
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
OP9
Actinobacteria
Spirochaetes
Proteobacteria
Actinobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Aneurinibacillus
phylum Verrucomicrobia
Leptothrix
order Myxococcales
Fam. Pasteuriaceae
Planifilum
Thermacetogenium
Fam. Microbacteriaceae
Sporanaerobacter
Fam. Carnobacteriaceae
Kingella
Shewanella
Anaerovibrio
Gp3
Anaeroplasma
Microcella
Opitutus
Rhodococcus
Pedomicrobium
order Rhodospirillales
Branhamella
Marmoricola
Acidaminococcus
cand. division OP9
order Rubrobacterales
Fam. Spirochaetaceae
Salmonella
Saccharomonospora
Fam. Nakamurellaceae
Alcaligenes
Caldimonas
Janthinobacterium
Thiobacillus
Sulfurovum
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
1
1
2
2
2
1
1
3
3
7
6
3
7
2
2
1
1
2
1
1
1
3
6
2
5
3
2
2
1
1
1
1
1
1
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.00
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.00
0.00
0.01
0.00
0.00
0.01
0.01
0.01
0.01
0.01
0.01
0.01
1
1
1
1
1
1
1
2
2
3
3
2
1
1
1
1
1
2
1
1
1
1
2
2
2
2
2
1
1
1
1
1
1
1
0.001
0.0004
0.0003
0.003
0.002
0.001
1
1
1
0.001
0.001
0.01
0.003
0.001
0.00
0.002
0.001
0.004
0.003
0.02
0.01
0.003
0.01
0.01
0.01
1
1
4
3
1
6
1
1
0.002
0.00
0.01
0.01
2
4
0.002
0.002
0.006
0.007
3
1
0.001
0.003
1
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Proteobacteria
Proteobacteria
Actinobacteria
Proteobacteria
Proteobacteria
Firmicutes
Planctomycetes
Actinobacteria
Bacteroidetes
Bacteroidetes
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Actinobacteria
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Proteobacteria
Firmicutes
Firmicutes
Proteobacteria
DeinococcusThermus
Firmicutes
Firmicutes
Alcanivorax
Caulobacter
Rhodobacter
Sterolibacterium
Ornithinimicrobium
Brevibacillus
Hydrocarboniphaga
Fam. Acetobacteraceae
Gordonia
Bdellovibrio
Chitinilyticum
Acetobacterium
Gemmata
Yaniella
Odoribacter
Xylanibacter
Alloiococcus
Phenylobacterium
Geothermobacter
order Rhizobiales
Dendrosporobacter
Dermacoccus
Pantoea
Fam. Peptococcaceae
Succiniclasticum
Acetivibrio
Mannheimia
Succinispira
Propionispora
Phyllobacterium
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
1
2
1
1
1
1
1
3
2
2
1
3
2
2
1
1
1
1
1
4
2
1
1
4
5
4
3
3
3
2
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.005
0.005
0.005
0.005
0.005
0.005
0.005
0.005
0.005
0.005
0.003
0.003
0.004
0.004
0.004
0.004
0.003
0.003
0.003
0.003
0.003
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
2
2
1
1
1
1
1
1
1
1
1
Truepera
class Bacilli
Globicatella
0.00
0.00
0.00
1
1
1
0.001
0.001
0.001
0.003
0.003
0.003
1
1
1
0.001
0.004
1
0.001
0.001
0.002
0.005
0.003
0.01
2
1
1
0.002
0.002
0.0003
0.008
0.008
0.002
2
1
1
0.001
0.004
2
0.002
0.01
0.002
0.001
0.001
0.001
0.004
0.004
0.03
0.004
0.004
0.003
0.003
0.02
3
4
3
2
2
2
1
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Archaea
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Proteobacteria
Verrucomicrobia
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Actinobacteria
Actinobacteria
Actinobacteria
Actinobacteria
Firmicutes
Firmicutes
Firmicutes
Firmicutes
Proteobacteria
Firmicutes
Firmicutes
Firmicutes
Actinobacteria
Actinobacteria
Firmicutes
Firmicutes
Firmicutes
Proteobacteria
Actinobacteria
Euryarchaeota
Firmicutes
Proteobacteria
Firmicutes
Synergistetes
Firmicutes
Acidobacteria
Bacteroidetes
Acidobacteria
Haematobacter
order Verrucomicrobiales
Citrobacter
Fam. Alcaligenaceae
order Xanthomonadales
Fam. Paenibacillaceae
Arcanobacterium
Fam. Rubrobacteraceae
Metascardovia
Sanguibacter
Sporobacter
Gemella
Fusibacter
Lachnospira
Fam. Rhodobacteraceae
Catenibacterium
Desulfotomaculum
Paenibacillus
Terrabacter
Isoptericola
Syntrophococcus
Gracilibacter
Finegoldia
Actinobacillus
Streptomyces
Methanoregula
Alkaliphilus
Azospirillum
Gallicola
Jonquetella
Dethiosulfovibrio
class Acidobacteria
Fam. Rikenellaceae
Gp6
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.001
0.001
0.001
0.001
0.001
0.001
0.11
0.01
0.00
0.00
0.00
1
1
3
3
2
1
2
2
2
2
5
3
1
1
1
2
2
7
3
1
2
1
1
3
2
2
2
2
2
1
1
1
1
1
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.0005
0.0005
0.0004
0.0004
0.0004
0.0004
0.0004
0.0003
0.0003
0.0003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.003
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.001
0.001
0.001
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
0.002
0.001
0.001
0.006
0.004
0.003
2
2
1
0.001
0.0003
0.0003
0.0004
0.003
0.01
0.002
0.002
0.002
0.002
0.008
0.03
1
1
1
1
4
2
0.001
0.0005
0.01
0.002
0.002
0.002
0.02
0.009
1
1
6
2
0.0005
0.002
1
0.008
0.003
0.002
0.002
0.002
0.001
0.21
0.018
0.009
0.006
0.006
0.03
0.01
0.01
0.01
0.01
0.003
1.0
0.09
0.04
0.03
0.03
3
2
2
2
2
2
1
1
1
1
1
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteria
Bacteroidetes
Actinobacteria
Firmicutes
Proteobacteria
Proteobacteria
Acidobacteria
Proteobacteria
Bacteroidetes
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Firmicutes
Proteobacteria
Proteobacteria
Proteobacteria
Proteobacteria
Actinobacteria
Firmicutes
Proteobacteria
Actinobacteria
Actinobacteria
Proteobacteria
Firmicutes
Firmicutes
Proteobacteria
Bacteroidetes
Firmicutes
Tenericutes
Acidobacteria
Bacteroidetes
Firmicutes
Proteobacteria
Proteobacteria
Sphingobacterium
Quadrisphaera
Halobacillus
Polaromonas
Fam. Desulfobacteraceae
Holophaga
order Nitrosomonadales
Proteiniphilum
Pasteurella
Salinivibrio
Cycloclasticus
Rhodanobacter
Sedimentibacter
Suttonella
Thiovirga
Acidocella
Rhodoferax
Mycobacterium
Vagococcus
Rubellimicrobium
Nonomuraea
Denitrobacterium
Fam. Rhizobiaceae
Marinibacillus
Fam. Enterococcaceae
Thauera
Rikenella
Propionispira
Mycoplasma
Gp4
Paludibacter
Syntrophomonas
Sulfitobacter
Acidiphilium
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
0.00
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
0.003
0.002
0.002
0.002
0.002
0.002
0.002
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.001
0.0004
0.0004
0.0004
0.0004
0.0004
0.02
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.01
0.004
0.004
0.004
0.004
0.004
0.004
0.003
0.003
0.003
0.003
0.003
0.003
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
Bacteria
Bacteria
Proteobacteria
Proteobacteria
Fam. Desulfohalobiaceae
Simonsiella
0.00
0.00
1
1
0.0004
0.0003
0.002
0.001
1
1