International Journal of Systematic and Evolutionary Microbiology (2015), 65, 189–194 DOI 10.1099/ijs.0.064477-0 Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system Antje Rusch,1,2 Shaer Islam,1 Pratixa Savalia3 and Jan P. Amend3,4 Correspondence 1 Antje Rusch [email protected] 2 Department of Microbiology, Southern Illinois University Carbondale, 1125 Lincoln Drive, Carbondale, IL 62901, USA Center for Ecology, Southern Illinois University Carbondale, 1125 Lincoln Drive, Carbondale, IL 62901, USA 3 Department of Earth Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089, USA 4 Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089, USA Enrichment cultures inoculated with hydrothermally influenced nearshore sediment from Papua New Guinea led to the isolation of an arsenic-tolerant, acidophilic, facultatively aerobic bacterial strain designated PNG-AprilT. Cells of this strain were Gram-stain-negative, rod-shaped, motile and did not form spores. Strain PNG-AprilT grew at temperatures between 4 6C and 40 6C (optimum 30–37 6C), at pH 3.5 to 8.3 (optimum pH 5–6) and in the presence of up to 2.7 % NaCl (optimum 0–1.0 %). Both arsenate and arsenite were tolerated up to concentrations of at least 0.5 mM. Metabolism in strain PNG-AprilT was strictly respiratory. Heterotrophic growth occurred with O2 or nitrate as electron acceptors, and aerobic lithoautotrophic growth was observed with thiosulfate or nitrite as electron donors. The novel isolate was capable of N2fixation. The respiratory quinones were Q-8 and Q-7. Phylogenetically, strain PNG-AprilT belongs to the genus Burkholderia and shares the highest 16S rRNA gene sequence similarity with the type strains of Burkholderia fungorum (99.8 %), Burkholderia phytofirmans (98.8 %), Burkholderia caledonica (98.4 %) and Burkholderia sediminicola (98.4 %). Differences from these related species in several physiological characteristics (lipid composition, carbohydrate utilization, enzyme profiles) and DNA–DNA hybridization suggested the isolate represents a novel species of the genus Burkholderia, for which we propose the name Burkholderia insulsa sp. nov. The type strain is PNG-AprilT (5DSM 28142T5LMG 28183T). The betaproteobacterial genus Burkholderia comprises 85 species with validly published names at the time of writing [LPSN (www.bacterio.net), Sept. 2014] populating two major lineages and at least three smaller clades (SuárezMoreno et al., 2012; Estrada-de los Santos et al., 2013; Martı́nez-Aguilar et al., 2013). Across lineages, the genus includes plant, animal and human pathogens as well as non-pathogenic species isolated mostly from plants and soils, but also from freshwater sediment and an industrial wastewater treatment system. Clinical and environmental isolates, free-living and symbiotic lifestyles, plant-beneficial and plant-pathogenic functions can even occur within the same species (Vial et al., 2011; Peeters et al., 2013; Vandamme et al., 2013; Verstraete et al., 2014). Many members of the genus show diazotrophy and degrade a variety of xenobiotic compounds (Coenye & Vandamme, 2003; Suárez-Moreno et al., 2012; Estrada-de los Santos et al., 2013). Several species of the genus Burkholderia are remarkably tolerant of metals and metalloids (Estrada-de los Santos et al., 2011), and genes encoding arsenite oxidase or arsenate reductase occur in 25 Burkholderia genomes [JGI-IMG (http://img.jgi.doe.gov/), NCBI-RefSeq (http:// www.ncbi.nlm.nih.gov/refseq/); Oct. 2013]. Non-pathogenic members of the genus are potentially relevant to agriculture and bioremediation. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain PNG-AprilT is KF733462. In May 2005, short (~30 cm) sediment cores were collected by scuba divers at 30 m distance from a hydrothermal vent in Tutum Bay (04u 059 S 153u 339 E), Ambitle Island, Papua New Guinea. This arsenic-rich hydrothermal area at Three supplementary tables and a supplementary figure are available with the online Supplementary Material. 064477 G 2015 IUMS Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Sun, 18 Jun 2017 02:04:48 Printed in Great Britain 189 A. Rusch and others 5–10 m water depth has been described extensively as to its geochemistry (Pichler et al., 1999; Price et al., 2007), energy sources (Akerman et al., 2011) and microbial community composition (Meyer-Dombard et al., 2012, 2013). The liquid growth medium PNG-AR2 was custom-designed to resemble resources and conditions at the sampling site, while adding a complex carbon source and leaving out all electron acceptors except for arsenate and small amounts of oxygen. The composition of this medium is given in Table S1 (available in the online Supplementary Material). Batches of PNG-AR2 were inoculated with homogenized sediment slurries from the top 10 cm of the core and incubated at 30 uC. Cultures were transferred at irregular intervals, reducing diversity by dilution and by repeated streaking on PNG-AR2 agar, until an isolate was obtained. The novel strain was designated PNG-AprilT and is the only strain of its species. DNA of strain PNG-AprilT was extracted from a pure culture in liquid medium PNG-AR2, and three overlapping segments of the 16S rRNA gene were amplified by PCR; information on the PCR primers is compiled in Table S2. Both strands were sequenced and assembled to a nearly complete sequence of 1414 bp. Using the EzTaxon-e server (Kim et al., 2012), strain PNG-AprilT was identified as a member of the genus Burkholderia, sharing highest 16S rRNA gene sequence similarity with the type strains of Burkholderia fungorum (99.8 %), Burkholderia phytofirmans (98.8 %), Burkholderia caledonica (98.4 %) and Burkholderia sediminicola (98.4 %). Nearly complete 16S rRNA gene sequences of the novel isolate and related type strains within species of the genus Burkholderia were aligned using CLUSTAL W 2.0 (Larkin et al., 2007), before applying the maximumlikelihood algorithm of PhyML 3.0 (Guindon et al., 2010) with bootstrap resampling (500 replicates). The resulting phylogenetic tree is shown in Fig. 1. 70 Growth of strain PNG-AprilT was supported by the complex media PNG-AR2 (Table S1), R-2A (Reasoner & Geldreich, 1985) and tryptic soy (TS) broth or agar, nutrient agar, MacConkey agar and marine broth (Difco; diluted to 50 % or 75 %), as well as the defined media MSB (Stanier et al., 1966) and B-litho (custom-designed, Table S3). On R-2A agar, the isolate formed smooth, off-white to cream colonies. Cells of strain PNG-AprilT were straight rods of 2–3 mm length and 1 mm width, were motile by polar flagella, stained Gram-negative and showed no spore formation even at 40 uC. Chemotaxonomic characterization of the novel isolate included analyses of membrane lipids, respiratory quinones and polar lipids. After growth on TS agar, the fatty acid composition of cellular lipids was quantified by GC analysis of their methyl esters, using the Sherlock Microbial ID system (MIDI). Results obtained with strain PNG-AprilT, in comparison with published data from closely related species of the genus Burkholderia grown on TS medium, are shown in Table 1. The similarity of these fatty acid profiles supports placement of the novel isolate within the genus Burkholderia, while specific differences in several fatty acids dissuade from membership in any of the existing species. From aerobic cultures in R-2A broth, cells were harvested and freeze-dried, before quinones were extracted and separated by TLC and subsequent HPLC (Tindall, 1990a, b). Measurements of UV absorption detected ubiquinones Q-8 (92 %) and Q-7 (8 %). Polar lipids were extracted from freeze-dried cells (Bligh & Dyer, 1959), separated by twodimensional TLC and stained to visualize specific functional groups (Tindall et al., 2007). In strain PNG-AprilT, four phospholipids, two aminophospholipids, one glycolipid, phosphatidylglycerol and phosphatidylethanolamine were detected (Fig. S1). Burkholderia insulsa PNG-AprilT (KF733462) Burkholderia fungorum LMG 16225T (AF215705) Burkholderia phytofirmans PsJNT (AY497470) Burkholderia bryophila LMG 23644T (AM489501) 52 Burkholderia sediminicola HU2-65WT (EU035613) 0.02 Burkholderia xenovorans LB400T (U86373) 74 95 72 Burkholderia caledonica LMG 19076T (AF215704) 72 Burkholderia dilworthii WSM3556T (HQ698908) Burkholderia rhynchosiae WSM3937T (EU219865) Burkholderia phenoliruptrix AC1100T (AY435213) Burkholderia megapolitana LMG 23650T (AM489502) Burkholderia phenazinium LMG 2247T (U96936) Burkholderia glathei LMG 14190T (U96935) 58 82 Burkholderia rhizoxinica HKI 454T (AJ938142) Burkholderia mallei ATCC 23344T (AF110188) Burkholderia caryophylli ATCC 25418T (AB021423) Pandoraea apista LMG 16407T (AF139173) 190 Fig. 1. Maximum-likelihood tree reconstructed from nearly complete 16S rRNA gene sequences of strain PNG-AprilT and type strains of related species within the genus Burkholderia, using Pandoraea apista LMG 16407T as an outgroup. Branch support (500 bootstraps) is indicated where larger than 50 %. Bar, 0.02 substitutions per site. Downloaded from www.microbiologyresearch.org by International Journal of Systematic and Evolutionary Microbiology 65 IP: 88.99.165.207 On: Sun, 18 Jun 2017 02:04:48 Arsenic-tolerant facultatively lithotrophic Burkholderia Table 1. Fatty acid composition of strain PNG-AprilT in comparison to published profiles of closely related species of the genus Burkholderia Taxa: 1, PNG-AprilT (data from this study); 2, B. fungorum (n59, where n is number of strains; Coenye et al., 2001); 3, B. phytofirmans PsJNT (Sessitsch et al., 2005); 4, B. caledonica (n57; Coenye et al., 2001); 5, B. sediminicola HU2-65WT (Lim et al., 2008); 6, B. xenovorans LB400T (Goris et al., 2004). Values are percentages of total fatty acids. Fatty acid 1 2 3 4 5 6 Summed feature* 8 41.1 35.6±2.1 44.3 34.2±1.7 31.3 27.3 3 18.5 13.6±1.9 17.6 14.5±1.8 17.0 19.1 2 5.8 8.1±1.1 5.6 7.4±0.9 8.0 8.5 16 : 0 14.9 14.7±0.9 13.8 13.6±1.6 20.8 18.2 16 : 0 3-OH 4.4 5.6±0.5 4.1 6.0±0.4 6.2 7.1 14 : 0 4.0 4.6±0.1 3.6 4.7±0.2 1.4 4.7 16 : 1 2-OH 2.6 3.5±0.7 2.3 2.7±0.4 1.3 2.2 17 : 0 cyclo 2.0 5.1±1.6 2.1 8.4±1.5 7.0 5.1 16 : 0 2-OH 1.7 3.6±0.5 2.1 2.4±0.4 2.2 2.2 2.0 2.5±0.7 1.8 3.7±0.7 2.9 3.6 19 : 0 cyclo v8c 18 : 1 2-OH 1.0 1.7±0.2 1.4 1.1±0.3 0.8 0.9 *Summed features represent groups of two or more fatty acids that could not be separated under the conditions used. Summed feature 2 comprises 14 : 0 3-OH, 16 : 1 iso-I, an unidentified fatty acid of equivalent chain-length 10.95 and 12 : 0 aldehyde; summed feature 3 comprises 16 : 1v6c and 16 : 1v7c; summed feature 8 comprises 18 : 1v6c and 18 : 1v7c. Triplicate growth curves of strain PNG-AprilT in oxic R-2A broth were used to determine the optima and tolerance limits towards temperature (4–48 uC), pH (2–9), salt (0– 3.6 %), arsenate (AsV) and arsenite (AsIII). The nonmanipulated variables in each experiment were T532 uC, pH 7, no NaCl, no AsV and no AsIII. Strain PNG-AprilT showed growth between 4 uC and 40 uC, with a broad optimum of 30–37 uC. In citrate-, MES-, Trizma- and PBSbuffered media, the isolate grew between pH 3.5 and pH 8.3, showing fastest growth at pH 5–6, and stayed viable at pH 3 for up to 5 weeks. Growth of its closest relative, B. fungorum DSM 17061T, occurred between pH 3.5 and pH 8.5 and was fastest at pH 6–7. Strain PNGAprilT showed salt tolerance of optimally 0–1.0 %, with a maximum of 2.7 % NaCl. The novel strain was able to grow in the presence of 0.5 mM AsV or AsIII, with the growth rate slightly decreasing with increasing As concentration; concentrations above 0.5 mM were not tested. When grown in microoxic medium PNG-AR2, the isolate reduced ~1.6 % of the AsV provided to AsIII, indicating detoxifying rather than respiratory arsenate reduction. At the isolation site in Tutum Bay, typical conditions in the top 1 m of sediment were 32–41 uC, pH 6.1–6.2, 0.3– 4.7 mM AsV and ,0.1 mM AsIII (Price et al., 2007). Pore waters represent a mixture between As-rich (13 mM) http://ijs.sgmjournals.org hydrothermal fluids of low salinity (~0.3 %) and local seawater containing 3.0 % (w/v) NaCl (Pichler et al., 1999; Price et al., 2007). The tolerance limits of strain PNGAprilT suggest its potential distribution across major parts of Tutum Bay, except where T.40 uC. Biochemically the novel strain was characterized in regards to its C sources, electron donors, electron acceptors and enzyme activities. Cultures of strain PNG-AprilT, B. fungorum DSM 17061T, B. phytofirmans DSM 17436T, B. caledonica DSM 17062T and B. sediminicola DSM 21400T were tested for their utilization of carbohydrates. Colonies grown on R-2A agar were suspended in API CHB medium (bioMérieux), dispensed into API 50CH microtest galleries (bioMérieux) and incubated at 32 uC, in order to identify carbohydrates used in aerobic metabolism. Differences in substrate utilization are summarized in Table 2. Carbohydrates used by all five species were D-glucose, D-fructose, D-galactose, D-ribose, D-xylose, DL-arabinose, D-mannose, L-rhamnose, DL-fucose, cellobiose, glycerol, D-adonitol, inositol, D-mannitol, D-sorbitol and DL-arabitol. Carbohydrates not used by any of the five species were sucrose, melibiose, turanose, D-tagatose, L-sorbose, melezitose, raffinose, starch, glycogen, dulcitol, erythritol, Nacetylglucosamine and inulin. Strain PNG-AprilT was also tested for growth in MSB (Stanier et al., 1966) and B-litho media with individual addition of acetate, succinate, citrate, malate and benzoic acid (20 mM each). The isolate showed aerobic growth on all of these substrates, whereas B-litho media amended with methanol or methylamine did not support growth. Oxidation/fermentation tests (Hugh & Leifson, 1953) showed oxidative metabolism of carbohydrates as specified in Table 2. In anoxic R-2A broth under N2 headspace, strain PNGAprilT showed no growth. Purple broth tests for fermentation of glucose, lactose and sucrose were negative. As in all known species of the genus Burkholderia, metabolism of the novel isolate was obligately respiratory. Anoxic R-2A or TS broth amended with nitrate (10 mM) supported growth, albeit slower than aerobic growth. No growth occurred with sulfate, thiosulfate, ferric iron or arsenate offered as electron acceptors. Nitrate reduction by strain PNG-AprilT was confirmed by a nitrate broth test with B. fungorum DSM 17061T as a positive control and B. sediminicola DSM 21400T as a negative control. Lithoautotrophic metabolism was tested in oxic medium B-litho with addition of nitrite, sulfide, thiosulfate, sulfite or arsenite as electron donors (0.5 mM each). Weak growth of strain PNG-AprilT was observed with thiosulfate and nitrite, as confirmed by the formation of protein (0.4–0.6 mg l21 and 0.1–0.3 mg l21, respectively). Lithoautotrophic growth on thiosulfate also occurred in the type strains of B. fungorum, B. phytofirmans, B. caledonica and B. sediminicola. Repeating the experiment in S-6 medium for thiobacilli (ATCC medium 290, containing 40 mM thiosulfate) confirmed these results. All thiosulfate-oxidizing cultures produced minor amounts of sulfate Downloaded from www.microbiologyresearch.org by IP: 88.99.165.207 On: Sun, 18 Jun 2017 02:04:48 191 A. Rusch and others Table 2. Phenotypic comparison of strain PNG-AprilT to type strains of closely related species of the genus Burkholderia Strains: 1, PNG-AprilT; 2, B. fungorum DSM 17061T; 3, B. phytofirmans DSM 17436T; 4, B. caledonica DSM 17062T; 5, B. sediminicola DSM 21400T; 6, B. megapolitana LMG 23650T (data from Vandamme et al., 2007); 7, B. phenazinium LMG 2247T (Coenye et al., 2001); 8, B. xenovorans LB400T (Goris et al., 2004); 9, B. rhynchosiae WSM3937T (De Meyer et al., 2013). Data for taxa 1–5 from this study except where indicated otherwise. +, Positive; 2, negative; W, weak; S(+), substrate-dependent, ONPG positive; ND, not determined. O/F, oxidation/fermentation test. Characteristic Growth at/with: 37 uC 1.5 % (w/v) NaCl 3.0 % (w/v) NaCl 10 % (w/v) lactose 0.03 % (w/v) cetrimide pH for growth Range Optimum Nitrate reduction Catalase Oxidase b-Galactosidase O/F oxidation of: D-Glucose D-Fructose D-Xylose Maltose Adonitol Utilization of: L-Xylose Xylitol Sucrose Trehalose Citrate 1 2 3 4 5 + + 2 + 2 +a* +a 2a 2a +a 2b +b +b +b +b 2a 2a 2a +a 2a 2c +c –c 3.5–8.3 5–6 + + + + 3.5–8.5 6–7 + +a +a 2a ND ND 6–8c ND ND ND 4–9 ND ND ND ND ND ND ND 2b +b 2b 2a +a 2a 2a 2 +c +c c S(+) 2 2 2 2 2 2 + 2 2 + + 2 + + + + +b +b +b 2b 2b +a +a +a +a +a 2c 2c 2c 2c 2 2 2 +a +a +a 2a 2a ND ND 2 + 2 2 2 + + + 2 2 + + 2 2 + + + 2 2 + + + 2 2 2b 2 + 2 + 2 2 2 2 2 + ND 2 ND ND ND ND ND ND + + 2 + 2 2 2 2 + ND W W ND ND ND 6 ND 2 2 2 2 ND 2 2 7 8 9 + 2 2 2 2 2 2 2 2 2 + + + ND ND W 2 ND ND ND ND ND + *Data from: a, Coenye et al. (2001); b, Sessitsch et al. (2005); c, Lim et al. (2008). (,35 mM in B-litho, 0.9–1.8 mM in S-6 medium). In nitrite-oxidizing cultures of strain PNG-AprilT, mean nitrate production was 41 mM, while 132 mM nitrite were consumed. Growth with thiosulfate as an electron donor has been described previously for mixotrophic cultures of ‘Burkholderia kururiensis subsp. thiooxydans’ (Anandham et al., 2009) and a few Burkholderia strains isolated from soil (Jung et al., 2005; Anandham et al., 2008) and acid mine drainage (Bhowal & Chakraborty, 2011). Nitrite oxidation has been demonstrated in one strain of Burkholderia cepacia; an indirect pathway via nitric oxide was suggested (Matsuzaka et al., 2003). Genes for the catalysing enzymes occur in 15 species of the genus Burkholderia [NCBI-RefSeq (http://www.ncbi.nlm.nih.gov/ refseq/), Sept. 2014]. Nitrite oxidation may also happen as alternate reaction of certain catalases (Sakai et al., 2000). Strain PNG-AprilT and the type strains of its four closest relatives grew in N-free mineral salts medium amended with mannitol (2 %), demonstrating their ability of N2-fixation. Diazotrophy is widespread in the genus Burkholderia (Coenye & Vandamme, 2003; Suárez-Moreno et al., 2012). 192 Applying well-established testing procedures (MacFaddin, 1980; Weiner & Penha, 1990; Leboffe & Pierce, 2011), strain PNG-AprilT was characterized as possessing catalase, oxidase, lipase/esterase and b-galactosidase. The enzymes b-glucosidase, urease, lysine decarboxylase, tryptophanase, DNase, gelatinase and amylase were not detected. A comparison with closely related species of the genus Burkholderia is provided in Table 2. Strain PNG-AprilT differed from most of its nearest phylogenetic neighbours in four or more traits, and as one of the few described members of the genus Burkholderia that were not isolated from soil or phytosphere, it is also distinct by habitat. Pure cultures of strain PNG-AprilT, B. fungorum DSM 17061T and B. phytofirmans DSM 17436T were grown in R-2A broth, before DNA was extracted and purified. DNA– DNA hybridization at 68 uC was determined spectrophotometrically in duplicate (De Ley et al., 1970; Huss et al., 1983) by the Identification Service of the LeibnizInstitut Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ; Braunschweig, Germany). Strain PNG-AprilT showed DNA–DNA relatedness duplicate Downloaded from www.microbiologyresearch.org by International Journal of Systematic and Evolutionary Microbiology 65 IP: 88.99.165.207 On: Sun, 18 Jun 2017 02:04:48 Arsenic-tolerant facultatively lithotrophic Burkholderia values of 35.0 % and 36.7 % with B. fungorum DSM 17061T, and 10.3 % and 20.5 % with B. phytofirmans DSM 17436T. Applying the recommended threshold value of 70 % DNA– DNA hybridization (Wayne et al., 1987), strain PNG-AprilT clearly belongs to a species different from its two closest relatives within the genus Burkholderia. The DNA base composition of the novel isolate was quantified by HPLC analysis of enzymically hydrolysed DNA (Cashion et al., 1977; Mesbah et al., 1989; Tamaoka & Komagata, 1984) and was carried out by the Identification Service of the DSMZ. The DNA G+C content of strain PNG-AprilT was 62.0 mol%, which is within the range of 61–69 mol% typically observed for members of the genus Burkholderia. L. Burcea, J. C. Minol and J. A. Armstrong assisted with growth media preparation and general maintenance of our cultures. On the basis of data obtained in this study, strain PNGAprilT represents a novel species of the genus Burkholderia, for which the name Burkholderia insulsa sp. nov. is proposed. subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov. Arch Microbiol 191, 885–894. Description of Burkholderia insulsa sp. nov. References Akerman, N. H., Price, R. E., Pichler, T. & Amend, J. P. (2011). Energy sources for chemolithotrophs in an arsenic- and iron-rich shallow-sea hydrothermal system. Geobiology 9, 436–445. Anandham, R., Indiragandhi, P., Madhaiyan, M., Ryu, K. Y., Jee, H. J. & Sa, T. M. (2008). Chemolithoautotrophic oxidation of thiosulfate and phylogenetic distribution of sulfur oxidation gene (soxB) in rhizobacteria isolated from crop plants. Res Microbiol 159, 579–589. Anandham, R., Indira Gandhi, P., Kwon, S. W., Sa, T. M., Kim, Y. K. & Jee, H. J. (2009). Mixotrophic metabolism in Burkholderia kururiensis Bhowal, S. & Chakraborty, R. (2011). Five novel acid-tolerant Burkholderia insulsa (in.sul9sa. L. fem. adj. insulsa unsalted, bland, boring; in reference to the unsurprising characteristics of the type strain). oligotrophic thiosulfate-metabolizing chemolithotrophic acid mine drainage strains affiliated with the genus Burkholderia of Betaproteobacteria and identification of two novel soxB gene homologues. Res Microbiol 162, 436–445. Cells are motile, Gram-stain-negative, non-sporulating, straight rods (2–3 mm long, 1 mm wide). Colonies on R-2A agar are white to cream with a smooth edge. Grows at 4– 40 uC (optimally at 30–37 uC), at pH 3.5–8.3 (optimum pH 5–6) and with salt concentrations of up to 2.7 % NaCl (optimum 0–1.0 %). Tolerates at least 0.5 mM AsV or AsIII and 10 % (w/v) lactose, but not cetrimide (0.03 %, w/v). The strictly respiratory metabolism uses O2 and nitrate, but not sulfate, thiosulfate, FeIII or AsV for electron acceptors. Carbon sources include D-glucose, D-fructose, D-galactose, D-ribose, DL-xylose, DL-arabinose, D-mannose, L-rhamnose, DL-fucose, cellobiose, lactose, glycerol, xylitol, inositol, Dmannitol, D-sorbitol, DL-arabitol, succinate, malate, citrate, acetate and benzoic acid, but not melibiose, sucrose, trehalose, turanose, D-tagatose, methanol or methylamine. Slow growth occurs lithoautotrophically with CO2 as sole C source, O2 as electron acceptor and thiosulfate or nitrite as electron donors; sulfite, sulfide or AsIII do not support lithotrophic growth. N2 can be used as sole N source. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911–917. Produces catalase, oxidase, lipase and b-galactosidase, but not b-glucosidase, urease, amylase, gelatinase, DNase, tryptophanase or lysine decarboxylase. 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