331 Exp Physiol 95.2 pp 331–350 Experimental Physiology – Research Paper Is oxidative stress a cause or consequence of disuse muscle atrophy in mice? A proteomic approach in hindlimb-unloaded mice Lorenza Brocca1,2 , Maria Antonietta Pellegrino1,2 , Jean-François Desaphy3 , Sabata Pierno1,2 , Diana Conte Camerino3 and Roberto Bottinelli1,2 1 3 Department of Physiology, Human Physiology Unit and 2 Interuniversity Institute of Myology, University of Pavia, Italy Section of Pharmacology, Department of Pharmacobiology, Faculty of Pharmacy, University of Bari, Italy Two-dimensional proteomic maps of soleus (Sol), a slow oxidative muscle, and gastrocnemius (Gas), a fast glycolytic muscle of control mice (CTRL), of mice hindlimb unloaded for 14 days (HU mice) and of HU mice treated with trolox (HU-TRO), a selective and potent antioxidant, were compared. The proteomic analysis identified a large number of differentially expressed proteins in a pool of ∼800 proteins in both muscles. The protein pattern of Sol and Gas adapted very differently to hindlimb unloading. The most interesting adaptations related to the cellular defense systems against oxidative stress and energy metabolism. In HU Sol, the antioxidant defense systems and heat shock proteins were downregulated, and protein oxidation index and lipid peroxidation were higher compared with CTRL Sol. In contrast, in HU Gas the antioxidant defense systems were upregulated, and protein oxidation index and lipid peroxidation were normal. Notably, both Sol and Gas muscles and their muscle fibres were atrophic. Antioxidant administration prevented the impairment of the antioxidant defense systems in Sol and further enhanced them in Gas. Accordingly, it restored normal levels of protein oxidation and lipid peroxidation in Sol. However, muscle and muscle fibre atrophy was not prevented either in Sol or in Gas. A general downsizing of all energy production systems in Sol and a shift towards glycolytic metabolism in Gas were observed. Trolox administration did not prevent metabolic adaptations in either Sol or Gas. The present findings suggest that oxidative stress is not a major determinant of muscle atrophy in HU mice. (Received 15 August 2009; accepted after revision 9 October 2009; first published online 9 October 2009) Corresponding author R. Bottinelli: Department of Physiology, Human Physiology Unit, University of Pavia, Via Forlanini 6, 27100 Pavia, Italy. Email: [email protected] Decrease in neuromuscular activity is a major factor that shapes structure and function of skeletal muscle, determining a loss of mass and strength and a shift in the contractile and metabolic properties towards a faster phenotype (Baldwin, 1996a,b). It is generally accepted that the loss in muscle mass depends on an imbalance between protein synthesis and degradation (Thomason & Booth, 1990; Gamrin et al. 1998). Among the potential triggers of protein degradation, recent works have highlighted the role of oxidative stress due to an imbalance between the cellular antioxidant systems and free radical (ROS) production L.B. and M.A.P. contributed equally to this work. C 2009 The Authors. Journal compilation C 2010 The Physiological Society 489 (Lawler et al. 2003, 2006b; Smith & Reid, 2006; Powers et al. 2007). Accordingly, amelioration of disuse muscle atrophy following antioxidant administration has been observed (Kondo et al. 1992; Appell et al. 1997; Arbogast et al. 2007). Therefore, a pivotal role is now widely recognized for oxidative stress in the pathogenesis of muscle wasting in disuse and in a variety of pathological conditions (Moylan & Reid, 2007). However, many unanswered questions still remain regarding the mechanisms underlying muscle atrophy following disuse. A major puzzle is whether oxidative stress is a requirement or merely plays a regulatory role (Lawler et al. 2003; Powers et al. 2007). In this respect, it is noteworthy that contradictory results have been obtained regarding the impact of antioxidants on muscle atrophy DOI: 10.1113/expphysiol.2009.050245 332 L. Brocca and others (Koesterer et al. 2002). Moreover, Servais et al. (2007) have shown that vitamin E ameliorated muscle atrophy, but, surprisingly, its protective effect did not depend on its antioxidant function, but probably on a direct modulation of muscle proteolysis. It is also unclear whether fast and slow muscles share the same mechanisms of disuse atrophy. Most studies (Kondo et al. 1992; Appell et al. 1997; Lawler et al. 2003, 2006b; Arbogast et al. 2007; Servais et al. 2007) focused on soleus muscle which, being a postural slow muscle, is severely affected by muscle atrophy, whereas limited information is available on fast muscles because they have been considered to be little involved in the process (Thomason & Booth, 1990). However, fast muscles have recently been shown to go through significant atrophy in some animal studies (Stelzer & Widrick, 2003; Ferreira et al. 2007). Moreover, a major potential mechanism of disuse atrophy, such as oxidative stress, might not be equally relevant in slow and fast muscles. In fact, slow and fast muscles could be exposed to ROS production to different extents, owing to their widely different phenotype and oxidative metabolism. To clarify the mechanisms of disuse atrophy, this study compared the adaptations to hindlimb unloading (HU) of the protein pattern of the soleus (Sol), a slow oxidative muscle, and of the gastrocnemius (Gas), a fast glycolitic muscle, of the mouse. The proteomic approach appeared particularly well suited to address the complexity of muscle phenotypic adaptations (Spangenburg & Booth, 2003), because it can be used to compare the expression of several hundreds proteins (∼800; Gelfi et al. 2006; Brocca et al. 2008) and provides a very comprehensive picture of the adaptations in the global protein pattern of a disused muscle. Importantly, the observation that proteins involved in the cellular defense systems against oxidative stress adapted very differently to HU in Sol and Gas prompted experiments to clarify the role of oxidative stress in disuse atrophy. The comparison between Sol and Gas was combined with the analysis of trolox administration, an antioxidant compound. Two-dimensional (2-D) proteome maps were obtained from Sol and Gas muscles of the following groups of mice: (i) control, ground-based mice (CTRL mice); (ii) mice hindlimb unloaded for 14 days (HU mice); and (iii) HU mice subjected to trolox treatment (HU-TRO mice) for 1 week before HU and during the 2 weeks of HU. The protein pattern of Sol and Gas showed large differences in adaptation to HU, which comprised the antioxidant defense systems and stress proteins, myofibrillar proteins, energy production systems, transport proteins and several other proteins having a variety of functional roles. In particular, the following points were noted: (i) antioxidant defense systems were impaired in HU Sol and enhanced in HU Gas; (ii) consistently, protein oxidation index and lipid Exp Physiol 95.2 pp 331–350 peroxidation were higher in HU Sol, but normal in HU Gas; and (iii) trolox administration did not prevent muscle atrophy, notwithstanding normal defense systems against oxidative stress and normal levels of protein oxidation and lipid peroxidation in HU-TRO Sol and Gas muscles. Thus, the results of this study indicate that oxidative stress is unlikely to be a major cause of muscle atrophy in hindlimb-unloaded mice. Methods Animal care and hindlimb unloading Experiments were approved by the Italian Health Department and complied with the Italian guidelines for the use of laboratory animals, which conform with the European Community Directive published in 1986 (86/609/ECC). Six-month-old male C57BL mice weighing 27–32 g (Charles River Laboratories, Calco, Italy) were randomly assigned to four groups: a control group (CTRL, n = 5); a hindlimb-suspended group (HU, n = 5); a hindlimb-suspended group which was treated with an antioxidant, trolox (HU-TRO, n = 5; Sigma, Milan, Italy); and a ground-based group (TRO; n = 3) which was treated with trolox in the exactly same way as the HU-TRO group, but was not hindlimb suspended. The CTRL and TRO mice were maintained free in single cages for 14 days. The method to induce muscle unloading by hindlimb suspension (HU) has been described in detail before (Desaphy et al. 2005). Briefly, the animals of HU group were suspended individually in special cages for 2 weeks by thin string tied at one end to the tail and at the other end to the top of the cage. All mice had water ad libitum and received 8 g a day of standard rodent chow. The HU-TRO and TRO mice received daily an intraperitoneal injection of 0.25 ml of a 1 M NaHCO 3 solution containing 5 g l−1 trolox, corresponding to ∼45 mg kg−1 day−1 for 3 weeks, commencing 1 week before HU and continuing for the 2 weeks of HU. Trolox [(±)-6-hydroxy-2,5,7,8-tetramethylchromane-2carboxylic acid, Sigma, Milan, Italy] is a water-soluble vitamin E analogue that freely crosses cell membranes. The drug displays a very high antioxidant capacity and may lack antioxidant-unrelated side-effects, so that it is widely used as a standard compound in antioxidant capacity assays. At the end of suspension, the mice were unfastened from the string and killed by cervical dislocation. The ground-based (TRO) or hindlimbunloaded (HU-TRO) mice receiving trolox injection daily showed no difference in body weight and food consumption compared with CTRL and HU non-treated animals, respectively. Soleus (Sol) and gastrocnemius (Gas) muscles were dissected and accurately weighed. Muscles from one leg were immediately frozen in liquid nitrogen and used for proteomic and oxyblot analysis, 490 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles while muscles from the other leg were placed into OCT (Tissue-Tek, Sakura Finetek Europe, Zoeterwoude, The Netherlands) embedding medium, immediately frozen in liquid nitrogen and thereafter used for cross-sectional area analysis (CSA). All the muscle samples were stored at −80◦ C. Cross-sectional area analysis The CSA of individual muscle fibres was determined both in the midbelly region of Sol (n = 5) and in the superficial portion of the Gas muscles (n = 5) for all experimental groups. Serial transverse sections (10 μm thick) of the muscle samples mounted in OCT embedding medium were cut in a cryostat at −20◦ C and collected on coated slides. The cross-cryosections were immunostained using two monoclonal antibodies against myosin heavy chain (MHC) isoforms (BA-F8 against MHC-I and SC-71 against MHC-IIA) as previously described in detail (Bottinelli et al. 1991). A secondary rabbit antimouse immunoglobulin G (IgG) antibody conjugated with peroxidase (P-0260, DAKO, Glostrup, Denmark) was used to reveal the binding of the primary antibodies. The antibodies enabled identification of type I and type IIA muscle fibres. In Sol muscles, most fibres were either stained by BA-F8 (type I) or by SC-71 (type IIA) or by both antibodies (hybrid fibres). However, several fibres were not stained and were very probably type IIX fibres, given the very low content in MHC-IIB of Sol even following HU. In Sol, the CSA was determined only for pure type I and type IIA fibres. The superficial Gas did not show any positively stained fibres for either the antibody against MHC-I or the antibody against MHC-IIA. Given the lack of staining with such antibodies and the almost homogeneous MHC-IIB content (∼90% in CTRL and 100% in HU and HU-TRO) of the Gas muscles in the population of mice used, all fibres in the cross-sections of the Gas samples were very probably type IIB. Therefore, in Gas, CSA was determined in all fibres of the sections and fibres were considered type IIB. Images of the stained sections were captured from a light microscope (Leica DMLS) and transferred to a personal computer using a video camera (Leica DFC 280). Cross-sectional areas of identified fibres was measured with Scion Image analysis software (NIH, Bethesda, MD, USA) and expressed in micrometres squared. Analysis of MHC isoform content The MHC isoform content was determined by an approach previously described in detail (Pellegrino et al. 2003). Briefly, about 6 μg of each muscle sample were dissolved in lysis buffer containing 8 M urea, 2 M thiourea, 4% Chaps, 65 mM dithiothreitol (DTT) and 40 mM Tris base. The lysates were loaded onto 8% polyacrylamide SDS-PAGE gels. Electrophoresis was run for 2 h at 200 V C 2009 The Authors. Journal compilation C 2010 The Physiological Society 491 333 and then for 24 h at 250 V; the gels were stained with Coomassie Blue staining. Four bands could be separated in the region of MHC isoforms. These bands corresponded, in order of migration from the fastest to the slowest, to MHC-I or slow, MHC-IIB, MHC-IIX and MHC-IIA. Densitometric analysis of MHC bands was performed to assess the relative proportion of the four MHC isoforms in the samples (Pellegrino et al. 2003). It should be noted that the same samples, made from the whole Sol or Gas muscles, were used for both analysis of MHC isoform distribution and proteomic analysis, whereas CSA of Gas fibres was determined in the superficial portion of the muscle only where MHC-I and MHC-IIA were absent. Oxyblot analysis Muscle homogenates. Muscle samples previously stored at −80◦ C were homogenized at 4◦ C in an antioxidant buffer containing protease inhibitors, 25 mM imidazole and 5 mM EDTA, pH 7.2 adjusted with NaOH. The protein suspension was centrifuged at 12 000g for 10 min and the pellet resuspended in 0.01% tetrafluoroacetic acid solution (200 μl of TFA for 0.1 g of tissue). Following a second centrifugation for 5 min at 12 000g, the supernatant was collected and the protein concentration determined (RC DC protein assay, Bio-Rad Laboratories, Hercules, CA, USA). Oxyblot procedure. The principle of oxyblot procedure is to detect carbonyl groups deriving from protein oxidation in the protein side-chains. The Oxyblot Oxidized Protein Detection Kit was purchased from Millipore (Vimodrone, Italy). The same experimental approach has been used previously (Barreiro et al. 2003, 2005; Coirault et al. 2007) and was applied here with minor modifications. Protein carbonyls were derivatized to dinitrophenylhydrazone (DNP) by reaction with 2,4dinitrophenylhydrazine (DNPH). The DNP-derivatized protein samples were separated by polyacrylamide gel electrophoresis followed by Western blotting. In detail, 6 μg of proteins for each muscle sample were denatured with SDS solution at a final concentration of 6%. The DNPH solution was added to obtain the derivation; the reaction was stopped after 15 min of incubation at room temperature. One-dimensional electrophoresis was carried out on 15% SDS-polyacrylamide gels loaded with 6 μg of derivatized proteins. A mixture of proteins of known molecular weight, provided with the kit, was also loaded to provide molecular weight markers. Proteins were transferred to nitrocellulose membranes at 100 V for 2 h, stained with Ponceau Red (Sigma) and then scanned. The membranes were blocked by incubation with 3% bovine serum albumin for 1 h and then incubated with rabbit anti-DNP antibody (at 1:150 dilution) for 1 h at room temperature. Blots were washed three times for 10 min 334 L. Brocca and others and were then incubated with peroxidase-labelled antirabbit IgG for 1 h. Blots were developed by using an enhanced chemiluminescence method in which luminol was excited by peroxidase in the presence of H 2 O 2 (ECL advance, Healthcare, Chalfont St. Giles, UK). To assess the selectivity of carbonyl measurements, a negative control was always loaded (muscle protein sample without the derivatization step). Autoradiographic films were imaged using a high-resolution scanner (Epson V750 PRO image system), and densitometric analysis was performed using the software Adobe Photoshop 5.5 (Adobe; D’Antona et al. 2003). Protein oxidation was quantified by defining the oxidative index (OI), i.e. the ratio between densitometric values of the oxyblot bands and those stained with Ponceau Red (Oxy/PR). To compare different experiments, the OI was expressed relative to control samples. Measurement of malondialdehyde (MDA) levels To assess oxidative stress using a method independent from oxyblot, we determined the levels of malondialdehyde in three Sol and three Gas muscles dissected from separate groups of three hindlimbsuspended mice and three hindlimb-suspended mice subjected to trolox administration. Muscles were dissected, weighed and frozen in liquid nitrogen. The MDA level, which reflects the level of lipid peroxidation, was measured by fluorescence assay of thiobarbituric acid reactive substance (TBARS) formation, following the indications of a commercial kit (OXItek, ZeptoMetrix Corp., Buffalo, NY, USA). Fluorescence measurements were performed in triplicate using a 96-well plate reader (Victor3 V mutilabel counter, Perkin Elmer, Waltham, MA, USA). The measured MDA levels were normalized with respect to homogenization volume and muscle weight. Proteome analysis [two-dimensional (2-D) gel electrophoresis, 2-DE] Sample preparation. The methods of proteome analysis are mostly the same as those previously used (Brocca et al. 2008). Muscle samples previously stored at −80◦ C were pulverized in a steel mortar with liquid nitrogen to obtain a powder that was immediately resuspended in a lysis buffer (8 M urea, 2 M thiourea, 4% Chaps, 65 mM DTT and 40 mM Tris base). The samples were vortexed, frozen with liquid nitrogen and thawed at room temperature four times and then incubated with DNase and RNase for 45 min at 4◦ C to separate proteins from nucleic acids and then spun at 35 000g for 30 min. Protein concentration in the dissolved samples was determined with a protein assay kit (2D quant Kit, GE Healthcare). In order to perform proteome analysis, a sample mix was obtained for each experimental animal group (CTRL, Exp Physiol 95.2 pp 331–350 HU and HU-TRO) for both soleus and gastrocnemius. Sample mix contained an equal quantity of protein taken from each muscle sample of CTRL, HU and HU-TRO. As the TRO group did not differ from the CTRL group it was not subjected to proteome analysis (see ‘Adaptation to protein pattern’ for detail). Two-dimensional gel electrophoresis. Isoelectrofocusing was carried out using the IPGphor system (Ettan IPGphor isoelectric focusing system, GE Healthcare). The IPG gel strips, pH 3–11 NL (non-linear), 13 cm long, were rehydrated for 14 h, at 30 V and 20◦ C, in 250 μl of reswelling buffer [8 M urea, 2 M thiourea, 2% (w/v) Chaps, 0.1% (v/v) tergitol NP7 (Sigma), 65 mM DTT and 0.5% (v/v) pH 3–11NL (GE Healthcare)] containing 100 μg protein sample. Strips were focused at 20 000 V h–1 , at a constant temperature of 20◦ C, and the current was limited to 50 μA per IPG gel strip. After isoelectrofocusing, the strips were stored at −80◦ C until use or equilibrated immediately for 10–12 min in 5 ml of equilibration buffer [50 mM Tris pH 6.8, 6 M urea, 30% (v/v) glycerol, 2% (w/v) SDS and 3% (w/v) iodoacetamide]. Then, the immobilized IPG gel strips were applied to 15% total acrylamidebisacrylamide monomer concentration, 2.5% crosslinker concentration polyacrylamide gels without a stacking gel. The separation was performed at 80 V for 17 h at room temperature. The 2-D gels were fixed for 2 h in fixing solution [40% (v/v) ethanol and 10% (v/v) acetic acid], stained with fluorescent staining (FlamingoTM fluorescent gel stain, Bio-Rad) for 3 h and destained with 0.1% (w/v) Tween 20 solution for 10 min. Triplicate gels of each sample were visualized using a Typhoon laser scanner (GE Healthcare) and analysed with Platinum software (GE Healthcare). One gel was chosen as the master gel, and used for the automatic matching of spots in the other 2-D gels. Only spots present in all gels used for the analysis were considered. The software provided the normalized volume for each spot (representing the amount of protein). A very good reproducibility of the spots among the triplicate gels of each experimental group was found. When the spot volumes for matched spots were plotted on a linear scale, regression analysis yielded correlation coefficients in the range 0.89–0.94. The volumes of each spots in the triplicate gels were averaged, and spots statistically changed were obtained (P < 0.05). The average volumes of each differentially expressed spot were used to determine the volume ratios reported in the figures and Supplemental tables. Supplemental Tables 1–4 also report the P values of each differentially expressed spot. Protein identification Electrophoresis fractionation and in situ digestion. For protein identification, 2-D gels were loaded with 300 μg 492 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles of protein per strip; the electrophoretic conditions were the same as those described in the ‘two-dimensional gel electrophoresis’ section. After staining with Colloidal Coomassie, spots were excised from the gel and washed in 50 mM ammonium bicarbonate (pH 8.0) in 50% acetonitrile to a complete destaining. The gel pieces were resuspended in 50 mM ammonium bicarbonate (pH 8.0) containing 100 ng of trypsin and incubated for 2 h at 4◦ C and overnight at 37◦ C. The supernatant containing the resulting peptide mixtures was removed and the gel pieces were re-extracted with acetonitrile. The two fractions were then collected and freeze dried. Matrix-Assisted Laser Desorption/Ionization Spectrometry analysis. The Matrix-Assisted 335 which definitive mass spectral data had previously been acquired. Moreover, a permanent exclusion list of the most frequent peptide contaminants (keratins and trypsin peptides) was included in the acquisition method in order to focus the analyses on significant data. Statistical analysis Data are expressed as means ± S.E.M. Statistical significance of the differences between means was assessed by Student’s t test or by one-way ANOVA followed by Student–Newman–Keuls test (data in Figs 2 and 9). A probability of less than 5% was considered significant (P < 0.05). Mass Laser Desorption/Ionization Mass Spectrometry mass spectra (MALDI MS) were recorded on an Applied Biosystem Voyager DE-PRO mass spectrometer equipped with a reflectron analyser and used in delayed extraction mode. One microlitre of peptide sample was mixed with an equal volume of α-cyano-4-hydroxycynnamic acid as matrix (10 mg ml−1 in 0.2% TFA in 70% acetonitrile), applied to the metallic sample plate and air dried. Mass calibration was performed by using the standard mixture provided by the manufacturer. Mass signals were then used for database searching using the MASCOT peptide fingerprinting search program (Matrix Science, Boston, MA, USA) available at http://www.matrixscience.com. Liquid Chromatography Tandem Mass Spectrometry analysis. When the identity of the proteins could not be established by peptide mass fingerprinting, the peptide mixtures were further analysed by Liquid Chromatography Tandem Mass Spectrometry (LCMSMS) using the LC/MSD Trap XCT Ultra (Agilent Technologies, Palo Alto, CA, USA) equipped with a 1100 HPLC system and a chip cube (Agilent Technologies). After loading, the peptide mixture (7 μl in 0.5% TFA) was first concentrated and washed either at 1 μl min−1 onto a C18 reverse-phase precolumn (Waters, Milford, MA, USA) or at 4 μl min−1 in 40 nl enrichment column (Agilent Technologies chip), with 0.1% formic acid as the eluent. The sample was then fractionated on a C18 reverse-phase capillary column (75 mm × 20 cm in the Waters system, 75 mm × 43 mm in the Agilent Technologies chip) at a flow rate of 200 nl min−1 , with a linear gradient of eluent B (0.1% formic acid in acetonitrile) in A (0.1% formic acid) from 5 to 60% in 50 min. Elution was monitored on the mass spectrometers without any splitting device. Peptide analysis was performed using data-dependent acquisition of one MS scan (m/z range from 400 to 2000 Da/e) followed by MS/MS scans of the three most abundant ions in each MS scan. Dynamic exclusion was used to acquire a more complete survey of the peptides by automatic recognition and temporary exclusion (2 min) of ions from C 2009 The Authors. Journal compilation C 2010 The Physiological Society 493 Results Muscle atrophy and MHC distribution Muscle weight to body weight ratio was significantly lower following 14 days HU in both Sol (CTRL, 0.38 ± 0.01, n = 5; and HU, 0.30 ± 0.01, n = 5) and Gas (CTRL, 5.17 ± 0.07, n = 5; and HU, 4.67 ± 0.17, n = 5). Atrophy was more pronounced in Sol (–22%) compared with Gas (−10%). The CSA of individual muscle fibres was determined in the midbelly region of Sol and in the superficial portion of the proximal Gas in CTRL and HU mice. Crosscryosections were immunostained with monoclonal antibodies against MHC-I and MHC-IIA (Fig. 1). In Sol, type I fibres went through a lower degree of atrophy (16%) than type IIA fibres (30%; Fig. 2). Muscle fibres from Gas also went through a significant degree of atrophy (25%; Fig. 2). All Gas fibres were very likely to be type IIB given the almost homogeneous MHC-IIB composition of Gas (see below) and the lack of staining with anti-MHC-I and anti-MHC-IIA antibodies (Fig. 1). A slower to faster shift in MHC isoform distribution was observed in both Sol and Gas muscle following HU in all five animals studied, although the shift in Gas was small owing to the almost homogeneous MHC-IIB content in CTRL Gas. In Sol, although the MHC-I relative content remained unchanged (CTRL Sol, 38.5 ± 2.1%; and HU Sol, 37.9 ± 2.5%), the MHC-IIA relative content was significantly (P < 0.05) lower in HU Sol (30.4 ± 3.7%) than in CTRL Sol (50.5 ± 2.6%), the MHC-IIX content was significantly higher in HU Sol (28.1 ± 3.6%) than in CTRL Sol (10.9 ± 2.0%), and MHC-IIB, which was absent in CTRL Sol, was present in HU Sol (3.8 ± 1.2%). The CTRL Gas was mostly composed of MHC-IIB (87.1 ± 2.0%), but also showed some MHC-I (2.8 ± 1.1%), MHC-IIA (4.0 ± 0.9%) and MHC-IIX content (5.9 ± 1.4%). In contrast, HU Gas was homogeneously composed of MHC-IIB (100%) in all five muscles analysed. A group of five animals was treated for 1 week before HU and for the 2 weeks of HU with a specific and highly 336 L. Brocca and others Exp Physiol 95.2 pp 331–350 Figure 1. Cross-cryosections of soleus muscles and superficial proximal gastrocnemius muscles used for determination of cross-sectional area of individual muscle fibres in control conditions (CTRL Sol and CTRL Gas), following HU (HU Sol and HU Gas) and following trolox treatment before and during HU (HU-TRO Sol and HU-TRO Gas) Cross-sections were immunostained using anti-MHC-I (BA-F8) and anti-MHC-IIA (SC-71) monoclonal antibodies as indicated on the left. Since all muscle fibres in cross-sections of gastrocnemius muscles were negative with both anti-MHC-I and anti MHC-IIA antibodies in CTRL, HU and HU-TRO samples, only cross-sections stained by anti-MHC-IIA antibody were analysed. efficient antioxidant, trolox, to counteract oxidative stress and clarify its role in disuse atrophy. Trolox did not counteract muscle atrophy. The muscle weight to body weight ratio of both Sol (0.30 ± 0.03, n = 5) and Gas (4.54 ± 0.15) were not different in HU-TRO mice and in HU mice. Figure 2 shows that trolox treatment did not prevent muscle fibre atrophy either in Sol or in Gas, in any fibre type. Trolox did not affect MHC distribution in Gas and partly affected it in Sol; MHC-IIA relative content was higher (43.0 ± 4.6%) and MHC-IIX content was lower (18.2 ± 2.0%) than in HU Sol; MHC-IIB was absent. Figure 2. Mean values (+ S.E.M.) of cross-sectional areas of individual muscle fibres from soleus (Sol) and gastrocnemius (Gas) muscles in control conditions (CTRL), following hindlimb suspension (HU) and following trolox treatment before and during HU (HU-TRO) Cross-sectional areas were determined on immunostained cross-cryosections. ∗ Significantly different from CTRL (P < 0.05). The number of fibres analysed is reported above each bar. 494 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles To ensure that trolox treatment per se did not determine muscle atrophy or relevant changes in muscle phenotype, a ground-based group of mice (n = 3) was treated with trolox. The muscle weight to body weight ratio of Sol (0.42 ± 0.04, n = 3) and Gas muscles (5.45 ± 0.31, n = 3) was not different from CTRL. The myosin heavy chain isoform distribution was also not different from control values either in Sol (MHC-I, 37.4 ± 3.1%; MHCIIA, 51.55 ± 4.63%; MHC-IIX, 10.91 ± 3.5%; and MHCIIB, 0%) or in Gas (MHC-I, 1.51 ± 0.31%; MHC-IIA, 2.49 ± 0.81%; MHC-IIX, 6.01 ± 0.49%; and MHC-IIB, 90.0 ± 2.2%). Adaptations of protein pattern Figure 3 shows examples of proteomic maps obtained from Sol and Gas muscles of CTRL, HU and HUTRO mice. The following comparisons were performed: (i) between muscles from HU and CTRL mice to identify the proteins differentially expressed as a result of disuse; and (ii) between muscles from HU-TRO and HU mice to assess whether and to what extent the antioxidant treatment could counteract the disuse-induced alteration in the protein pattern. Proteomic analysis was not performed on the ground-based trolox-treated group (TRO) because neither the whole animals (body weight and food consumption) nor their Sol and Gas muscles (muscle weight to body weight ratio and MHC isoform distribution) showed any difference from ground-based untreated mice (CTRL). The differentially expressed proteins were grouped on the basis of their functional role into the following categories: myofibrillar proteins; antioxidant defense systems and heat shock proteins; energy production systems (glycolytic metabolism, oxidative metabolism and creatine kinase); and transport proteins. The remainding proteins, with variable functional roles, were pooled into a single group (other proteins). The circles and numbers in the control maps of Sol (Fig. 4A) and Gas (Fig. 4B) indicate all proteins found to be differentially expressed and which could be identified by MALDI-Tof. The numbers enable identification of the protein and all related information in Figs 5 and 7 for Sol and in Figs 6 and 8 for Gas. The full set of information regarding the differentially expressed proteins is reported in Supplemental Tables 1–4. In Sol, 774 spots were found to be present in both CTRL and HU maps and were compared. The percentage of differentially expressed spots was 8.26% (n = 64). Of the 64 spots found to be differentially expressed, 19 Figure 3. Representative two-dimensional gels of Sol and Gas from the CTRL, HU and HU-TRO groups Thirteen centimetre IPG gel strips, pH 3–11 NL (non-linear), were used in the first dimension, and SDS gels (15% T, 2.5% C) were used in the second dimension. C 2009 The Authors. Journal compilation C 2010 The Physiological Society 495 337 338 L. Brocca and others Exp Physiol 95.2 pp 331–350 Figure 4. Representative two-dimensional gels of control soleus (A) and gastrocnemius muscles (B) Thirteen centimetre IPG gel strips, pH 3–11 NL (non-linear), were used in the first dimension, and SDS gels (15% T, 2.5% C) were used in the second dimension. In A (CTRL Sol), the protein spots found to be differentially expressed either in HU Sol versus CTRL Sol or in HU-TRO Sol versus HU Sol are circled and numbered. The numbers enable identification of the circled spots using Figs 5 and 7. The same applies to B (CTRL Gas), in which the numbers enable identification of the circled spots using Figs 6 and 8. 496 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles were upregulated and 45 downregulated. Forty-three of these spots could be identified by MALDI-Tof (Fig. 5 and Supplemental Table 1). In Gas, 802 spots were found to be present in both CTRL and HU maps and were compared. The percentage of differentially expressed proteins following HU was lower in Gas (4.5%, n = 36) than in Sol, suggesting a lower impact of HU. Of the 36 differentially expressed spots, 12 were upregulated and 24 downregulated. Twenty of these spots could be identified by MALDI-Tof (Fig. 6 and Supplemental Table 2). Seven hundred and sixty-two protein spots in Sol and 732 protein spots in Gas were found to be present in both HU and HU-TRO maps and were compared. The percentage of differentially expressed spots was not large either in Sol (4.46%, n = 34) or in Gas (4.09%, n = 30). Figure 5. Histogram of volume ratios of differentially expressed proteins in HU Sol in comparison with CTRL Sol As shown on the right, proteins were grouped on the basis of their functional role as follows: myofibrillar proteins; antioxidant defense systems and heat shock proteins; energy production systems (glycolytic metabolism, oxidative metabolism and creatine kinase); transport proteins; and other proteins. The numbers on the x axis indicate the ratio between the average volume of a given protein expressed in HU Sol and the average volume of the same protein in CTRL Sol. Positive numbers (on the right) indicate upregulation of a protein in HU, whereas negative numbers (on the left) indicate downregulation. On the left of the bars, the accession number of each protein (Swiss-Prot accession number) and the numbers we attributed to the spots in the 2-D maps of Fig. 4A (spot number) are shown. The full information on the proteins and the numerical ratios between volumes are reported in Supplemental Table 1. C 2009 The Authors. Journal compilation C 2010 The Physiological Society 497 339 340 L. Brocca and others Of the 34 spots found to be differentially expressed in Sol, nine were upregulated and 25 downregulated. Nineteen of these spots could be identified by MALDI-Tof (Fig. 7 and Supplemental Table 3). Of the 30 spots found to be differentially expressed in Gas, 8 were upregulated and 22 downregulated. Fifteen of such spots could be identified by MALDI-Tof (Fig. 8 and Supplemental Table 4). Several of the differentially expressed proteins reported in Figs 5–8 and Supplemental Tables 1–4 were found at multiple spot locations (see, for example, myozenin in Fig. 5 and Supplemental Table 1 and aconitase in Fig. 8 and Supplemental Table 4) and therefore appear more than once in the figures and Supplemental tables. The presence Exp Physiol 95.2 pp 331–350 of multiple spots of a protein is frequent in 2-D gels and is due to the existence of isoforms or to post-translational modifications of a protein. Different isoforms of the same protein might differ both in molecular weight and in isoelectric point, whereas multiple spots due to post-translational modifications usually have the same molecular weight. Mass spectrometry was not able to identify all isoforms of some proteins or the nature of their post-translational modifications. However, in only two cases, MLC-Is and MLC-If, the multiple spots of a protein varied in opposite directions (some upregulated and some downregulated). In such cases, to assess whether the trend was towards up- or downregulation, the multiple spots of MLC-Is and MLC-If were averaged. Figure 6. Histogram of volume ratios of differentially expressed proteins in HU Gas in comparison with CTRL Gas The same approach to represent differentially expressed proteins was used as in Fig. 5. ‘Spot number’ refers to the number of circled proteins in Fig. 4B. The full information on the proteins and the numerical ratios between volumes are reported in Supplemental Table 2. 498 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles Myofibrillar proteins. In HU Sol, several spots corresponding to myosin light chain isoforms were differentially expressed (Fig. 5). Myosin light chain-IIf was upregulated. Myosin light chain-If was on average upregulated, whereas MLC-Is content was on average unchanged. The content of troponin I fast and troponin C was higher, whereas actin content was lower in HU Sol (Fig. 5). Two load-bearing cytoskeleton proteins were also downregulated in Sol: desmin, which plays a critical role in the maintenance of structural and mechanical integrity of the contractile apparatus, being involved in longitudinal and especially lateral force bearing (Paulin & Li, 2004); and myozenin, a member of a family of Z-disk proteins, also called calsarcins or FATZ (Frey et al. 2000; Takada et al. 2001), which mechanically link adjacent sarcomeres. We identified a total of four spots for myozenin in Sol and Gas 2-D maps, which we simply indicated as A, B, C and D, because the correspondence between myozenin and calsarcin isoforms (Frey et al. 2000) and between the four spots and such isoforms is still unknown. In HU Gas, fewer myofibrillar proteins were differentially expressed compared with HU Sol (Fig. 6). Troponin I fast and MLC-IIf content was higher in HU Gas, consistent with what was observed in Sol and with the slower to faster shift in MHC isoform content. Actin was downregulated, as in soleus. In contrast to what observed in Sol, three spots corresponding to myozenin (B, C and D) were upregulated. Only one of the differentially expressed myozenin spots (C) was common to Sol and Gas, and was upregulated in Gas and downregulated in Sol. Figure 7. Histogram of volume ratios of differentially expressed proteins in hindlimb-suspended soleus of mice treated with trolox (HU-TRO Sol) in comparison with HU Sol The same approach to represent differentially expressed proteins was used as in Figs 5 and 6. ‘Spot number’ refers to the number of circled proteins in Fig. 4A. The full information on the proteins and the numerical ratios between volumes are reported in Supplemental Table 3. C 2009 The Authors. Journal compilation C 2010 The Physiological Society 499 341 342 L. Brocca and others Trolox administration had little impact on myofibrillar proteins. Troponin I fast and myozenin (spot C) were downregulated in both Sol (Fig. 7) and Gas (Fig. 8), and actin was downregulated in Gas. Antioxidant defence systems and heat shock proteins. In HU Sol, a major group of differentially expressed proteins were those involved in cellular defence systems against reactive oxygen species or free radicals (ROS). Superoxide dismutase (Zn/Cu SOD) was upregulated, peroxiredoxin6 (PRDX6) and carbonic anhydrase 3 (CAH III) were downregulated, suggesting an impairment of antioxidant defence systems. Consistently, several heat shock proteins (HSPs), which also protect cells against oxidative stress (Lawler et al. 2006a), were downregulated (Fig. 5). In contrast to what observed in HU Sol, all the differentially expressed proteins involved in antioxidant defense systems, Zn/Cu SOD, CAH III and PRDX6, were upregulated in Gas following HU (Fig. 6). Interestingly, the content of mitochondrial SOD (mn-SOD) was Exp Physiol 95.2 pp 331–350 also higher in HU Gas. Therefore, no impairment of antioxidant defense systems was observed in HU Gas. Consistently, no differences were observed among HSPs. Trolox administration resulted in an upregulation of antioxidant defense systems in both Sol (Fig. 7) and Gas (Fig. 8). The free radical scavenging properties of trolox, therefore, prevented the HU-induced deterioration of the antioxidant defense systems in Sol and enhanced them above control levels in Gas, but no effect was observed on muscle and muscle fibre atrophy (Fig. 2). Energy production systems. In HU Sol, all the differentially expressed proteins involved in the three cellular energy production systems (glycolytic enzymes, oxidative enzymes and creatine kinase) were downregulated, except for glyceraldehyde 3-phosphate dehydrogenase (Fig. 5). In HU Gas, four glycolytic enzymes and creatine kinase were more abundant than in CTRL Gas and, of the three differentially expressed enzymes involved Figure 8. Histogram of volume ratios of differentially expressed proteins in hindlimb-suspended gastrocnemius of mice treated with trolox (HU-TRO Gas) in comparison with HU Gas The same approach to represent differentially expressed proteins was used as in Figs 5, 6 and 7. ‘Spot number’ refers to the number of circled proteins in Fig. 4B. The full information on the proteins and the numerical ratios between volumes are reported in Supplemental Table 4. 500 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles in oxidative metabolism, two were upregulated (NADH dehydrogenase 1α complex 4 and α-electron transfer flavoprotein,) and one (2-oxoglutarate dehydrogenase) was downregulated (Fig. 6). Thus, in contrast to what was observed in Sol, no evidence of a general impairment of energy production systems was observed in Gas, but merely a shift towards a more glycolytic metabolism. Trolox administration did not prevent the effect of disuse on energy production systems in either Sol (Fig. 7) or Gas (Fig. 8). In HU-TRO Sol, glycolytic enzymes and creatine kinase were even further downregulated, whereas no differentially expressed oxidative enzymes were found, suggesting that trolox did not prevent the downregulation of oxidative enzymes observed following HU. In HU-TRO Gas, trolox administration affected expression of the following three enzymes of the energy production systems, which were all downregulated: phosphoglucomutase (a glycolytic enzyme); aconitase (an oxidative enzyme); and creatine kinase, reverting the increase in the latter observed following HU (Fig. 8). Transport proteins. In Sol, two downregulated spots corresponded to different isoforms of myoglobin (Fig. 5). Blood proteins found in our proteomic maps (haemoglobin, serum albumin, serotransferrin and apolipoprotein A-I) come from capillaries and very small blood vessels in the muscle sample. The lower content of most of them in HU Sol (Fig. 5) finds a possible explanation in the lower muscle vascularization that has been suggested to occur following HU (Desplanches et al. 1990). Interestingly, apoliprotein A-I, a fat-binding protein that represents the major component of the highdensity lipoproteins (HDL) in plasma, was upregulated. In HU-TRO Gas, myoglobin, which was not affected in HU Gas, was downregulated (Fig. 8). Other proteins. In Sol, several proteins were not assigned to a specific functional group and were pooled into the category ‘other proteins’. Within this group, sarcalumenin and parvalbumin play important roles in calcium handling within muscles cells (Fig. 5). Sarcalumenin, which is a calcium-binding protein in the sarcoplasmic reticulum (Yoshida et al. 2005), was downregulated. In contrast, parvalbumin, a calcium buffer in the cytosol, was upregulated. Two fatty acid-binding proteins (FABPH3s) were less abundant in HU Sol than in CTRL Sol. Aldose reductase, a putative antioxidant defense system (Kang et al. 2007), was downregulated in HU Sol. Trolox downregulated it even further in Sol and downregulated it in Gas. Trolox downregulated parvalbumin in Sol. C 2009 The Authors. Journal compilation C 2010 The Physiological Society 501 343 Protein oxidation and lipid peroxidation Protein oxidation index was much higher in HU Sol than in CTRL Sol, whereas it was not different in HU Gas and CTRL Gas. These findings are consistent with the proteomic analysis, which suggested an impairment of the cellular defense systems against oxidative stress in HU Sol (Fig. 5), but not in HU Gas (Fig. 6). In Sol, trolox administration fully counteracted the disuse-induced increase in oxidation index (Fig. 9). This finding is consistent with the proteomic analysis, which showed a reversal of the impairment of the antioxidant defense systems in HU-TRO Sol. In HU-TRO Gas, the oxidation index was slightly, but significantly, lower than in HU Gas, consistent with the upregulation of the proteins involved in antioxidant defense systems (Fig. 8). Indeed, the oxidation index of both HU-TRO Sol and HU-TRO Gas was slightly, but significantly, lower than in the corresponding CTRL muscles (Fig. 9). The redox balance was also assessed by an approach independent from oxyblot, i.e. the analysis of lipid peroxidation based on determination of the levels of MDA. Malondialdehyde levels were significantly higher in HU Sol (331 ± 51 nmol g−1 ) than in CTRL Sol (197 ± 11 nmol g−1 ), whereas the difference between HU Gas (109 ± 21 nmol g−1 ) and CTRL Gas (149 ± 7 nmol g−1 ) did not reach statistical significance. Following trolox administration, HU-TRO Sol (201 ± 11 nmol g−1 ) and HU-TRO Gas (102 ± 18 nmol g−1 ) showed the same level of MDA as the corresponding CTRL muscles. The results of the analyses of protein oxidation and lipid peroxidation were, therefore, consistent. Discussion In this study, the adaptations to muscle disuse of the protein pattern of a slow oxidative muscle, the Sol, and a fast glycolytic muscle, the Gas, were studied by proteomic analysis. This analysis enabled the complexity of muscle phenotype adaptations to be addressed (Spangenburg & Booth, 2003) by identifying the proteins differentially expressed following HU and antioxidant administration among the very large number (∼800) of protein spots, which could be separated in two-dimensional maps. The differentially expressed proteins can be considered the targets of the disuse process and of the antioxidant treatment. Notably, although a large number of proteins, belonging to several functional categories, were differentially expressed in the different conditions, their changes were fully consistent with one another, building a very comprehensive and solid picture of the adaptations of both Sol and Gas to HU and antioxidant administration. Soleus and Gas adapted to disuse very differently in all the following protein categories identified: myofibrillar 344 L. Brocca and others proteins; antioxidant defense systems; energy production systems; and a group of proteins with variable functional roles (‘other proteins’). The major findings related to muscle atrophy and myofibrillar protein pattern, antioxidant defense systems and oxidative stress, and energy metabolism. Hindlimb unloading and muscle mass and myofibrillar protein pattern Although it is generally believed that slow muscles are most affected by disuse (Fitts et al. 2001), in agreement with previous observations (Stelzer & Widrick, 2003; Ferreira et al. 2007), the present findings indicate that 14 days HU resulted in significant atrophy not only of Sol, a slow muscle, but also of Gas, a fast muscle. The greater atrophy of type IIA Sol and type IIB Gas fibres compared with type I Sol fibres is surprising, because it is not in agreement with the long-standing idea of a Exp Physiol 95.2 pp 331–350 preferential atrophy of slow fibres in disuse (Baldwin, 1996b; di Prampero & Narici, 2003). However, similar atrophy in slow and fast muscle fibres both in humans (Hather et al. 1992; Fitts et al. 2001) and mice (Stelzer & Widrick, 2003) has been previously observed. Collectively, the results suggest that the variable sensitivity to disuse atrophy does not depend on the different fibre-type composition of slow and fast muscles, but more probably on their function in maintaining posture. In HU Sol, the downregulation of actin, desmin and myozenin indicated by the proteome analysis (Fig. 5) complements the picture of muscle atrophy. The lower actin content is consistent with previous observations (Chopard et al. 2001; Riley et al. 2002; Moriggi et al. 2008). Since both desmin (Paulin & Li, 2004) and myozenin (Frey et al. 2000; Takada et al. 2001) are load-bearing cytoskeleton proteins, their downregulation is probably an adaptation to the lower load applied to muscle fibres during HU and is bound to result in a decrease in Figure 9. Protein oxidation index (OI) in soleus (A) and gastrocnemius muscles (B) in control conditions (CTRL, lane 1), following hindlimb unloading (HU, lane 2) and following trolox treatment before and during HU (HU-TRO, lane 3) The OI is determined as the ratio between the densitometric values of the oxyblot bands and those stained with Ponceau Red in Western blots of muscle homogenates (see Methods). The height of each vertical bar represents the mean + S.E.M. ∗ Significantly different from all other groups (P < 0.05). The band close to 43 kDa is actin. 502 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles load-bearing capacity upon reloading. Contradictory findings have previously been reported on the impact of disuse on desmin content in both humans and rats (Chopard et al. 2001, 2005; Moriggi et al. 2008). In HU Gas, actin was downregulated, in agreement with the observation of a disproportionate loss of thin filaments in Gas (Riley et al. 2002). Myozenin was upregulated, in contrast to what was observed in Sol (Fig. 6). This finding suggests that there are different adaptations of the Z-disks to HU in the two muscles. It should be noted that Zdisks are not only mere mechanical joints between adjacent sarcomeres, but can also play a role in sensing the stress applied to muscle cells (Hoshijima, 2006). The variations of MHC isoform distribution and of MLC and troponin I isoform content (Figs 5 and 6) observed in both Sol and Gas confirm the slower to faster shift in muscle phenotype generally observed in disuse (Fitts et al. 2001) and are consistent with a very recent and detailed analysis of myofibrillar protein isoforms in disuse (Yu et al. 2007). In Gas, the almost homogeneous MHCIIB content of control muscles prevented a large slower to faster shift in MHC content. Interestingly, some adaptations of the Sol protein pattern, i.e. the downregulation of desmin, various oxidative enzymes and carbonic anhydrase and the upregulation of parvalbumin, might depend on the disuseinduced activation of a gene expression programme transforming Sol muscle fibres from slower to faster. Such proteins are, in fact, differentially expressed in slow and fast muscles or muscle fibres (Celio & Heizmann, 1982; Schiaffino & Reggiani, 1996; Chopard et al. 2001). In contrast, many adaptations observed either did not have a known relation with a shift in muscle fibre types or were in the opposite direction of what was expected, among which were the adaptations of glycolytic enzymes and creatine kinase. It is interesting to note that most protein adaptations in Gas could not be related to a shift in MHC isoform distribution because very limited shift was observed. These observations are consistent with the hypothesis that differences among muscle fibres are controlled by several gene expression programmes, and not by a single ‘master switch’, changing fibre type and all other proteins in co-ordinated fashion (Spangenburg & Booth, 2003) Importantly, antioxidant administration did not prevent muscle and muscle fibre atrophy either in Sol or in Gas. The downregulation of myozenin in both HU-TRO Sol and HU-TRO Gas and of actin in HU-TRO Gas (Figs 7 and 8) is consistent with persistent muscle atrophy. Hindlimb unloading and oxidative stress Profound alterations in antioxidant defense systems and HSPs (Fig. 5), fully consistent with a higher protein C 2009 The Authors. Journal compilation C 2010 The Physiological Society 503 345 oxidation index (Fig. 9) and lipid peroxidation, occurred in HU Sol. Zinc/copper superoxide dismutase was upregulated, whereas all other differentially expressed proteins of this category were downregulated. Although an increase in Zn/Cu SOD might at first appear protective against oxidative stress, the decrease in the capacity to convert hydrogen peroxide into water resulting from a downregulation of enzymes downstream of Zn/Cu SOD, including peroxiredoxin (PRDX6), can indeed result in accumulation of hydrogen peroxide and promote oxidative stress (Lawler et al. 2003). Carbonic anhydrase 3 (CAH III) protects against oxidative damage by binding free radicals (Cabiscol & Levine, 1995; Raisanen et al. 1999). Its reduced content is in agreement with a recent gene expression study in mouse HU Sol (Dapp et al. 2004). Heat shock proteins work downstream of the other antioxidant defense systems by removing products caused by the formation of free radicals and by protecting cells against oxidative stress (Lawler et al. 2006b). The downregulation of HSPs is consistent with the lower content of Hsp70 and Hsp25 previously observed following HU (Lawler et al. 2006b). Notably, the findings in mouse Sol recapitulated what was previously observed using different experimental approaches in rat Sol and consequently could suggest a major pathogenic role of oxidative stress in disuse atrophy, in agreement with previous studies (Lawler et al. 2003, 2006b; Servais et al. 2007). Surprisingly, the analysis of HU Gas which, being a fast muscle, has been little studied, suggests the opposite conclusion that oxidative stress, at least in mice, does not play a major role in determining atrophy. In HU Gas, Zn/Cu SOD, CAH III and PRDX6 were upregulated (Fig. 6), HSPs were not differentially expressed, protein oxidation index (Fig. 9) and lipid peroxidation were not different from control Gas, but muscle and muscle fibre (Fig. 2) atrophy occurred. Importantly, the effects of antioxidant treatment on Sol and Gas strongly support the lack of a major causal role of oxidative stress. Trolox prevented the HU-induced deterioration of the antioxidant defense systems in Sol (Fig. 7) and enhanced them above control levels in Gas (Fig. 8). Consistently, it counteracted the increase in oxidation index in HU Sol, decreased it below normal in Gas (Fig. 9) and counteracted the increase in lipid peroxidation in HU Sol. However, no effect was observed on muscle and muscle fibre atrophy (Fig. 2). To reduce the risk of an unexpected non-specific effect, the dose of trolox was chosen at an intermediate level between the minimal (10 mg kg−1 day−1 , e.g. Sagach et al. Pharmacol Res 2002) and maximal doses (92 mg kg−1 d−1 ; e.g. McClung et al. 2007) reported in the literature. The possibility that maximal doses of trolox could have affected muscle atrophy cannot definitely be rule out, although it appears very unlikely because lipid and protein oxidation 346 L. Brocca and others were fully prevented and antioxidant defense systems were upregulated by trolox treatment. No information was available on antioxidant defense systems in HU Gas until a very recent study in rats (Siu et al. 2008). Interestingly, in substantial agreement with the present work, Siu et al. (2008) showed no impairment in antioxidant defense systems, in contrast to what was previously observed in rat soleus (Lawler et al. 2003, 2006b; Servais et al. 2007). However, the authors suggested a pathogenic role of oxidative stress based on higher lipid peroxidation, whereas we did not find a significant increase in lipid peroxidation, in agreement with no increase in protein oxidation index in Gas (Fig. 9). The slower phenotype and higher oxidative metabolism of rat Gas (Rijkelijkhuizen et al. 2003) compared with mouse Gas could explain the somewhat different adaptation to disuse reported by Siu et al. (2008) and by this work (Dapp et al. 2004). The impact of antioxidant treatments on muscle atrophy has been studied previously, and contradictory results have been obtained. Amelioration of disuse atrophy was observed in some studies (Kondo et al. 1992; Appell et al. 1997; Arbogast et al. 2007; McClung et al. 2007; Servais et al. 2007), but not in others (Koesterer et al. 2002; Matuszczak et al. 2004). The discrepancies could depend on the disuse models and on the drugs employed, which could have a more complex action than only an antioxidant action. Disuse atrophy resulting from mechanical ventilation (McClung et al. 2007) and oneleg immobilization (Kondo et al. 1992; Appell et al. 1997) could be more sensitive to antioxidant treatment because these models result in a much faster atrophy, which might have pathogenic mechanisms somewhat different from HU. Servais et al. (2007) suggested that the amelioration of Sol atrophy following vitamin E administration did not depend on its antioxidant properties, but on its inhibition of proteolytic enzymes. The Bowman–Birk inhibitor used by Arbogast et al. (2007) has multiple actions, including the inhibition of serine proteases, and not only an antioxidant action. Hindlimb unloading and energy metabolism In HU Sol, a general downsizing of all energy production systems occurred for glycolytic enzymes, oxidative enzymes and creatine kinase. While the downregulation of oxidative enzymes is expected on the basis of the slower to faster shift in muscle phenotype (Abadi et al. 2009), the downregulation of glycolytic enzymes is not in agreement with their higher activity generally observed in rats following HU or space flight (Fitts et al. 2001) and with a very recent proteomic analysis of rat Sol muscle following HU (Moriggi et al. 2008). However, Dapp Exp Physiol 95.2 pp 331–350 et al. (2004) have shown a lower expression of glycolytic enzymes following 7 days HU in mice and suggested that the discrepancy with rat Sol could depend on the much faster starting phenotype of mice and on the consequently different shift in fibre types following HU. Notably, a similar downregulation of glycolytic enzymes has been observed following 4–11 days immobilization in humans by microarray analysis (Chen et al. 2007). Moreover, the downregulation of desmin, myoglobin and FABPH3 in Sol are consistent with and could indeed contribute to a major impairment of cell metabolism. In fact, desmin is not only a load-bearing protein, but is involved in mitochondrial positioning and respiratory function (Milner et al. 2000). Myoglobin is not only a short-term oxygen reservoir, but could facilitate oxygen diffusion within the cell and stimulate mitochondrial biogenesis by downregulating NO (Flogel et al. 2001). It is noteworthy that desmin-null mice have structural and functional alterations of the mitochondria (Goldfarb et al. 2004). Moreover, FABPH3s could control lipid metabolism and fuel usage (Makowski & Hotamisligil, 2004) and could play a central role in the control of lipid signalling in the cells (Makowski & Hotamisligil, 2004), which might be involved in modulating inflammation and metabolism. Interstingly, the downregulation of NADH-ubiquinone oxidoreductase 49 kDa, cytochrome c1 and ATP synthase (Fig. 5), belonging to mitochondrial complex I, III and V, respectively, could not only impair energy metabolism, but also contribute to ROS production in HU Sol. The respiratory chain is in fact a major site of ROS production. A slowing down of any of its steps (Powers et al. 2007) and its asymmetric inhibition could increase its ROS production. In HU Gas, an upregulation of glycolytic enzymes and no evidence of a general impairment of energy production systems were observed. The higher content of glycolytic enzymes in a fast muscle following disuse is in agreement with previous observations (Thomason & Booth, 1990). It is unlikely that this shift can be explained by the small slower to faster shift in MHC isoform distribution observed in HU Gas. It is more likely that unloading determined an increase in glycolytic metabolism mostly independent of fibre-type shift (Grichko et al. 2000). The higher content of glycolytic enzymes following HU in Gas is consistent with a shift in substrate usage away from lipids and towards glucose and could determine metabolic inflexibility, a phenomenon recently suggested to play a role in disuse atrophy (Mazzatti et al. 2008). Trolox administration did not counteract, but even further decreased glycolytic metabolism, creatine kinase and myoglobin in Sol and decreased oxidative and glycolytic metabolism and myoglobin in Gas, suggesting that the impairment of energy metabolism in disuse is not due to free radical production. 504 C 2009 The Authors. Journal compilation C 2010 The Physiological Society Exp Physiol 95.2 pp 331–350 Proteomic analysis of disused mouse muscles Several observations reported here suggest that metabolic adaptations could concur to the pathogenesis of disuse atrophy and not be a mere consequence of it. Together with myofibrillar proteins and antioxidant defense systems, the proteins directly (metabolic enzymes) or indirectly involved (myoglobin, desmin, FHBS) in energy metabolism were the most important targets of HU. Their adaptations were not merely a consequence of a slow to fast shift in muscle phenotype. The antioxidant treatment, which restored apparently normal defense systems against oxidative stress and counteracted protein oxidation and lipid peroxidation, did not reverse both metabolic adaptations and muscle atrophy. The possible contribution of a metabolic programme in modulating cell size is now widely recognized (Sandri, 2008). Indeed, a general impairment in energy production has also been observed in a number of pathological conditions in which muscle wasting occurs, such as muscular dystrophy (Porter et al. 2004), cancer, fasting, diabetes and uraemia (Lecker et al. 2004) and in burn sepsis (Duan et al. 2006). Recently, metabolic inflexibility has been stressed as a possible cause of disuse atrophy (Mazzatti et al. 2008). The possible link between metabolic adaptations and structural and functional alterations in disused muscle is still unclear. Interestingly, an impaired energy metabolism per se could decrease protein synthesis, which is an ATP-requiring process. Moreover, the downregulation of creatine kinase might play a role in muscle atrophy. In transgenic mice lacking either the cytoplasmic (M-CK) or both the cytoplasmic and mitochondrial creatine kinase, muscle atrophy and damage occur (Momken et al. 2005). Interestingly, RING-finger protein-1 (MuRF1), a major ubiquitin ligase involved in muscle proteolysis in disuse, has very recently been found to ubiquinate creatine kinase and to favour its catabolism (Koyama et al. 2008). In Gas, metabolic inflexibility per se could play a role in muscle deterioration following disuse (Mazzatti et al. 2008), although metabolic alterations appear much less evident than in Sol. Hindlimb unloading and calcium handling The downregulation of sarcalumenin and the upregulation of parvalbumin suggest a disuse-induced alteration of calcium handling within the cell. The lower content of sarcalumenin suggests a weakening of the calciumhandling capacity of the sarcoplasmic reticulum (Yoshida et al. 2005), whereas the upregulation of parvalbumin suggests an increase in the calcium-buffering capacity of the cytosol. The higher content of parvalbumin following HU could be related to the slow to fast shift in muscle phenotype (Celio & Heizmann, 1982). The upregulation of parvalbumin is in agreement with previous gene C 2009 The Authors. Journal compilation C 2010 The Physiological Society 505 347 expression studies on immobilized human muscle (StAmand et al. 2001) and on muscles of small mammals in a variety of conditions characterized by muscle wasting (Lecker et al. 2004; Duan et al. 2006). In this respect, it should be noted that disuse-induced alterations of resting calcium concentration following HU have been observed, although there is no agreement on whether resting calcium concentration increases (Ingalls et al. 1999) or decreases (Fraysse et al. 2003). Conclusions The present findings indicate, surprisingly, that oxidative stress is more likely to be a consequence than a cause of muscle atrophy following HU in mice, either in a slow oxidative muscle, the soleus, or in a fast glycolitic muscle, the gastrocnemius. Although the roles of different pathogenic mechanisms in disuse muscle atrophy could vary according to species and experimental models, our findings in mice open the possibility that oxidative stress might not be a major requirement of muscle atrophy also in other conditions. Metabolic alterations emerge as a possible component of the pathogenesis of disuse atrophy in mice Sol, whereas in Gas their role is much less clear. This study does not rule out the possibility that oxidative stress can play a role in disuse-induced alterations of muscle force production through oxidation of myofibrillar proteins (Dalla Libera et al. 2005) and effects on electrophysiological parameters (Desaphy et al. 2005; Powers & Jackson, 2008), independently from its lack of effect on muscle atrophy. References Abadi A, Glover EI, Isfort RJ, Raha S, Safdar A, Yasuda N, Kaczor JJ, Melov S, Hubbard A, Qu X, Phillips SM & Tarnopolsky M (2009). 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