Research Article Received: 4 August 2015 Revised: 1 February 2016 Accepted article published: 12 February 2016 Published online in Wiley Online Library: 17 March 2016 (wileyonlinelibrary.com) DOI 10.1002/jsfa.7667 Quantification and identification of microorganisms found on shell and kernel of fresh edible chestnuts in Michigan Irwin R Donis-González,a* Daniel E Guyera and Dennis W Fulbrightb Abstract BACKGROUND: Chestnut is a relatively new cultivated crop for Michigan, and postharvest loss due to decay has been problematic as production has increased each year. In 2007, more than 25% of chestnuts were lost to postharvest decay, equivalent to approximately 5300 kg of fresh product. To determine the organisms responsible for decay, a microbiological survey was performed in 2006 and 2007 to identify microorganisms involved in postharvest shell (external surface) mold and internal kernel (edible portion) decay of chestnuts. RESULTS: Filamentous fungi including Penicillium expansum, Penicillium griseofulvum, Penicillium chrysogenum, Coniophora puteana, Acrospeira mirabilis, Botryosphaeria ribis, Sclerotinia sclerotiorum, Botryotinia fuckeliana (anamorph Botrytis cinerea) and Gibberella sp. (anamorph Fusarium sp.) were the predominant microorganisms that negatively impacted fresh chestnuts. Populations of microorganisms varied between farms, harvesting methods and chestnut parts. CONCLUSION: Chestnuts harvested from the orchard floor were significantly (P < 0.05) more contaminated than chestnuts harvested directly from the tree, by more than 2 log colony-forming units (CFU) g−1 . In addition, a significant difference (P < 0.05) in the microbial population was seen between chestnuts submitted by different growers, with average count ranges of fungi, mesophilic aerobic bacteria (MAB) and yeasts equal to 4.75, 4.59 and 4.75 log CFU g−1 respectively. © 2016 Society of Chemical Industry Keywords: postharvest; molds; storage; yeasts; mesophilic aerobic bacteria (MAB) INTRODUCTION 4514 Chestnut (Castanea spp.) is considered to be the most popular nut-bearing tree among the Mediterranean countries of Europe and many countries in Asia, with new production now starting in Australia, New Zealand and Chile.1 – 5 The increased market for chestnuts is partially due to their nutritional value, low lipid content and antioxidant properties.6 – 8 Edible sweet chestnut species include Castanea dentata Borkh., Castanea mollissima BI., Castanea crenata Sieb. and Zucc., Castanea sativa Mill., Castanea seguinii Dode, Castanea pumila Mill. and Castanea henryi Rehd. and Wils., among others.1,9,10 Commercial orchards have been established in various locations in the USA and have been increasing over the years.1,11 The USA has more than 1500 ha of chestnut tree plantations. Of these, approximately 600 ha of young (less than 10 years old) chestnut trees are distributed among Michigan, California, Oregon, Washington and Ohio.11 Commercial plantations are primarily composed of the cultivar ‘Colossal’ (European × Japanese hybrid C. sativa × C. crenata). Other cultivars planted are composed predominately of Chinese chestnuts owing to the naturally occurring chestnut blight resistance in this species.1,10 Mature seedling Chinese chestnut trees (non-grafted trees) also have been planted in Midwest and Eastern states, with some orchards of seedling European chestnuts. North American chestnuts are typically harvested from late September to the first week of November, with most chestnuts sold from Thanksgiving through Christmas to specialty ethnic J Sci Food Agric 2016; 96: 4514–4522 markets, retail stores, food processors, restaurants, holiday festivals, farmers’ markets and individual consumers. In Michigan, fresh chestnuts and frozen, peeled chestnuts comprise up to 60 and 30% of outlet sales respectively. The remainder is sold dehydrated as flour, breading and a new product called chestnut slices.12 Since freshness and microbial quality are factors in chestnut marketing, domestic production has a definite advantage over imported chestnuts. In Michigan, production is limited primarily owing to the young nature of the industry and microbial decay. Nut rot pathogens initiating infection in the field as well as postharvest decay fungi are known to cause severe losses, leading to completely unmarketable chestnuts. Worldwide, there are two important chestnut kernel pathogens contributing to kernel decay – both fungal in nature. By pathogen, we mean a species that can infect a developing or mature healthy kernel by following evolved mechanisms of pathogenesis. One ∗ Correspondence to: IR Donis-González, Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI 48824, USA. E-mail: [email protected] a Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI 48824, USA b Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA www.soci.org © 2016 Society of Chemical Industry Microorganisms on edible chestnuts in Michigan www.soci.org chestnut kernel pathogen, Sclerotinia pseudotuberosa,13 causes black rot and has been a serious disease of chestnut kernels in Europe. The other pathogen, Gnomonipsis smithogilvyi, causes brown rot and has been found in Europe, Australia, New Zealand and India.14 – 18 Of these two, brown rot is considered to be an extremely serious threat to chestnut cultivation.19 Several ‘molds’ or fungal species are known to cause severe postharvest decay and disease problems in chestnuts worldwide. Among these, Penicillium sp., Aspergillus sp., Fusarium sp., Phomopsis castanea, Acrospeira mirabilis and S. pseudotuberosa (syn. Ciboria batschiana, S. batschiana; anamorphic from Rhacodiella castanea, syn. Myrioconium castanea) have been repeatedly identified in France, Italy, Australia, Chile and the USA.13,20 – 27 Our studies were designed to provide a better understanding of the impact and possible effect of microorganisms on postharvest chestnut quality in Michigan. Our goals were to identify microorganisms involved in shell mold and kernel decay on chestnuts, evaluating the effect of pre- or postharvest methods on microbial populations, and assess shell mold severity and incidence of kernel decay of chestnuts collected from different farms in Michigan. This study was important for two reasons. First, since chestnut cultivation is still a relatively young industry in Michigan, these studies may act a ‘time zero’ for future studies on kernel pathogens as the industry matures; and second, to help the young industry cope with the enormous task of managing postharvest decay. Portions of this paper were published elsewhere.28 MATERIALS AND METHODS Collection of chestnut samples and storage All harvested chestnuts used in this study were collected from the cultivar ‘Colossal’, a C. sativa × C. crenata (European × Japanese) hybrid chestnut.1 This is a very popular cultivar in Michigan and common among Michigan chestnut farms. These nuts were collected either from a single farm in Livingston County, Michigan during the 2006 and 2007 growing seasons (single-farm study) or from seven farms scattered throughout Michigan (seven-farm study). Before long-term storage of chestnuts collected for these studies, each chestnut sample was transferred to a mesh bag and then randomly placed within a 2000 kg bin of commercial chestnuts in a cooler at 4 ∘ C located at Michigan State University (East Lansing, MI, USA). Samples were separately placed on racks to prevent cross-contamination. J Sci Food Agric 2016; 96: 4514–4522 Identification of microorganisms found on chestnuts in Michigan A total of 200 individual ‘Colossal’ chestnuts per growing season (2006 and 2007) were collected at a chestnut receiving station from seven different farms. Samples were randomly collected twice during storage (time 0, arrival to 120 days post-arrival at receiving station) to identify the organisms that colonized the chestnuts. Chestnuts showing shell mold or kernel decay symptoms were sorted for isolation and identification of the causal agents. Before identification, the observed symptoms were described, photographed and classified. Identification of microorganisms – MAB and fungi All microorganisms isolated from chestnuts, whether from shell or kernel, were selected and subsequently purified after isolation by repeated transfer on culture media. MAB and fungi were identified by sequencing rDNA subunits.30 Genomic DNA was extracted from molds using a QIAquick Gel Extraction Kit (Qiagen, Valencia, CA, USA) as recommended by the manufacturer. A 0.5–1 mg sample of mycelia taken from 5–7-day-old molds grown on potato dextrose agar was immediately ground in a sterile mortar and pestle containing 500 μL of cetyltrimethylammonium bromide (CTAB) buffer (pH 8.3) (Qiagen). After this the DNA was extracted followed the procedure proposed by Hamelin et al.31 The region including the two spacers (ITS4 and ITS6) was amplified. A total volume of 25 μL for each reaction contained 60 ng of DNA, 23 μL of AFLP™ amplification core mix (Applied Biosystems, Foster City, CA, USA), 2.5 units of AmpliTaq Gold DNA polymerase (Applied Biosystems) and 10 pmol L−1 of each primer. The primers used, ITS4 (5′ -TCCTCCGCTTATTGATATGC-3′ ) and ITS6 (5′ -GAAGGTGAAGTCGTAACAAGG-3′ ), are complementary to the final portion of 18S rDNA adjacent to ITS3 and to the initial portion of 25S rDNA adjacent to ITS2 respectively.30,32 Bacterial genomic DNA was extracted using the protocol proposed by Jacobs et al.33 The region including the two spacers (UFLP and URPL) was amplified using the method of LiPuma et al.34 A total volume of 25 μL for each reaction contained 60 ng of DNA, 23 μL of AFLP™ amplification core mix (Applied Biosystems), 2.5 units of AmpliTaq Gold DNA polymerase (Applied Biosystems) and 10 pmol L−1 of each primer. The primers UFPL (5′ -AGTTTGATCCTGGCTCAG-3′ ) and URPL (5′ -GGTTACCTTGTTACGACTT-3′ ) were used for targeting the 16S rDNA region from the kingdom Procaryotae (bacteria).34 For molds and bacteria, the extracted DNA region was amplified in a 2720 Thermal Cycler (Applied Biosystems). The program included a cycle at 95 ∘ C for 2 min, 30 cycles of 95 ∘ C for 30 s, 55 ∘ C for 30 s and 71 ∘ C for 1 min, and a final elongation at 71 ∘ C for 10 min. The polymerase chain reaction (PCR) product was placed in wells on agarose gel (12.5 g L−1 ) and electrophoresed (Gel Electrophoresis Power Supply Model 250, Life Technologies, Grand © 2016 Society of Chemical Industry wileyonlinelibrary.com/jsfa 4515 Determination of microbial populations – shell The following methods were used to determine the microorganisms found on chestnuts regardless of the study (single-farm or seven-farm study). To determine the microorganisms found on shells, 25 g chestnut samples were placed in a sterile stomacher bag (Whirl-Pak, Fisher Scientific, Pittsburgh, PA, USA), diluted 1:5 in phosphate buffer solution (PBS) (pH 7.4) and agitated for 1 min in a pulsifier (Filtaflex Ltd, Almonte, ON, Canada). After serial dilution, 100 μL aliquots were spread on trypticase soy agar (Becton and Dickinson, Baltimore, MD, USA) containing 6 g L−1 Bacto™ yeast extract (Becton and Dickinson) and 100 μg mL−1 cycloheximide (Sigma-Aldrich, St Louis, MO, USA) for quantification of mesophilic aerobic bacteria (MAB), and on potato dextrose agar (Becton and Dickinson) containing 20 μg mL−1 streptomycin (Sigma-Aldrich) and 50 μg mL−1 ampicillin (Sigma-Aldrich) for enumeration of yeasts and molds. The populations of MAB were determined after 48 h at 25 ± 3 ∘ C. Mold and yeast plates were counted after 72 h of incubation at 25 ± 3 ∘ C.29 Determination of microbial populations – kernel To determine the microorganisms found on kernels, chestnuts were flame sterilized after dipping in ethanol (99 mL of 200 proof ethanol in 1 mL of distilled water). After manually removing the shell, each kernel sample was weighed, placed in a sterile stomacher bag (Whirl-Pak, Fisher Scientific), diluted 1:5 in PBS and homogenized for 1 min (normal speed) in a stomacher (Model 400, Seward, Worthing, UK). The suspension was serially diluted and quantitatively examined for MAB, yeasts and molds as previously described.29 www.soci.org Island, NY, USA) for 3 h at 70 kg m2 s−3 A−1 . After electrophoresis, the amplified region was purified using a QIAquick PCR Purification Kit (Qiagen). The PCR product was sequenced in both directions using moderate-throughput sequencing (Research Technology and Support Facility, MSU, East Lansing, MI, USA). Sequences were deposited in Lasergene software (DNASTAR, Madison, WI, USA) and used as queries for similarity searches in the NCBI nucleotide database.35 Species reported had a 98–100% match in both directions. Identification of microorganisms – yeasts Yeasts were inoculated on potato dextrose agar, incubated for 72 h at 25 ± 3 ∘ C and then sent to the Diagnostic Center for Population and Animal Health (MSU, East Lansing, MI, USA) for further identification. Yeasts were identified using the API 20C yeast identification system together with microscopic morphology determinations. This computer-assisted system for rapid identification of yeasts provides results comparable to those obtained by conventional morphological methodologies.36 Quantifying microorganisms from a single farm comparing nuts collected from ground versus sampled from tree Mature chestnuts were sampled using a stratified sampling method with two levels. The first level consisted of nine chestnut samples (∼1 kg each) taken from the ground after less than 24 h of contact. The second level was composed of nine chestnut samples (∼1 kg each) hand-harvested from varying tree heights, in mature burs. Each sample was placed in a plastic bag and transported in a portable cooler to the storage facility. Microbial populations on chestnut shells and kernels over two consecutive growing seasons (2006 and 2007) were assessed after harvest and at 30, 60, 90 and 120 days of storage. Microbial mold severity and kernel decay incidence analysis on chestnuts collected from seven farms This seven-farm study consisted of evaluating differences between shell mold severity and kernel decay incidence (microbial quality) among farms in Michigan. To do so, three 0.8 kg samples of ‘Colossal’ chestnuts per farm were randomly collected before storage during the 2007 growing season. Each sample was stored in mesh bags. For consistency, a subsample consisting of three randomly chosen stored chestnuts collected from each of seven farms was assessed for severity of shell mold and incidence of kernel decay after harvest and at 30 and 60 days of storage. Shell mold severity was calculated as the mean number of a five-point visual qualitative measurement of decay, where 0 = 0% decay, 1 = 1–25% decay, 2 = 26–50% decay, 3 = 51–75% decay and 4 = 76–100% decay. Incidence of decayed kernels was calculated as the mean number of chestnuts showing symptoms of decay. 4516 Statistical analysis One-factor and repeated measurement designs with analysis of variance (ANOVA) were done on all microbial count and microbial qualitative assessment data obtained from fresh chestnuts. Since all chestnuts were randomly assigned to the different treatment conditions, sphericity can be assumed, making multivariate as well as degrees of freedom corrections unnecessary.37,38 Multivariate ANOVA (MANOVA) was also used to determine differences between the microbial populations in chestnuts from different farms. Significance between means was determined using wileyonlinelibrary.com/jsfa IR Donis-González, DE Guyer, DW Fulbright the Tukey post hoc multiple comparisons of means test at the 95% family-wise confidence level (P = 0.05). Calculations were performed using the statistical package ‘R: a language and environment for statistical computing’ (R Development Core Team, 2007).38 RESULTS Identification of microorganisms colonizing the shell of chestnuts in Michigan and their associated symptoms Chestnuts (from ‘Colossal’ trees pollinized with unknown pollen) harvested by growers from seven different farms and taken to a receiving station were colonized by a broad range of microorganisms (Table 1), not all of which were thought to cause shell mold. Fungi that infested and caused shell mold on fresh chestnuts were mainly composed of three species of Penicillium (P. expansum, P. griseofulvum, P. chrysogenum) and Coniophora puteana. Dark-green to black spots with white mycelia were observed on chestnuts colonized by Penicillium species. These spots began on the hilum (Fig. 1a). Once the fungus grew, a mantle of white mycelia containing dark-green, blue, bluish-green or olive-green completely covered the shell (Fig. 1b). In extreme conditions the fungus softened and discolored the shell tissue, subsequently affecting the quality of the fresh product (Fig. 1c). Symptoms from Penicillium were first observed after harvest and developed rapidly during storage. Penicillium species belong to the phylum Deuteromycota, producing green, bluish-green or olive-green spores asexually. Various species cause blue and green mold rots. They are the most common and usually the most destructive of all postharvest diseases, affecting various fruits and vegetables, including commodities of importance such as apples and citrus.39 In addition to the losses caused, the fungus also produces several mycotoxins such as patulin and zearalenone.40 Coniophora puteana rarely infected the shell; however, when present, the organism developed in pockets of white web-like mycelia around several chestnuts (Fig. 1d), which had apparent high moisture content. After manually removing the fungus, the appearance and quality of the chestnuts were not affected. This fungus belongs to the phylum Basidiomycota. It has never been reported affecting chestnuts or other commodities, but it can be found affecting indoor wood structures and stored wood, causing wet brown rot, significant decay and economic damage.41 Identification of microorganisms colonizing the kernel of chestnuts in Michigan and their associated symptoms Microorganisms infecting chestnut kernels primarily included Penicillium spp. (P. griseofulvum, P. expansum, P. chrysogenum), A. mirabilis, Botryosphaeria ribis, Sclerotinia sclerotiorum, Botryotinia fuckeliana (anamorph Botrytis cinerea) and Gibberella sp. (anamorph Fusarium sp.). Penicillium spp. (P. griseofulvum, P. expansum, P. chysogenum) produced white mycelia and dark-green, blue, bluish-green or olive-green spores (Fig. 2a). Penicillium spp. sometimes penetrated deep into the kernel, resulting in extensive kernel rot or complete kernel decay (Fig. 2b). Acrospeira mirabilis appeared as dark-brown spots (conidia) filling the space between the kernel cotyledons and kernel cracks. Whitish, web-like mycelia developed around these spots. Brown necrotic spots were observed around the colonies, which sometimes enlarged, turned light-brown and finally dark-brown. The infection sometimes penetrated deep into the kernel, softening the tissue and resulting in opaque brownish kernel decay (Fig. 2c). © 2016 Society of Chemical Industry J Sci Food Agric 2016; 96: 4514–4522 Microorganisms on edible chestnuts in Michigan www.soci.org Table 1. Microorganisms isolated from stored chestnut shell and kernel during 2006 and 2007 growing seasons in Michigan Symptom Organism Fungi Species Penicillium sp. Bacteria Kernela appearanceb Identificationc F F BS, DS 18S (99/99)-M Penicillium expansum F F BS, DS 18S (99/98) P. griseofulvum F F BS, DS 18S (99/98) Comments and references Genus has been reported to cause mold and decay in chestnuts22 – 25,43,45,50 and other commodities of economic importance39 P. chrysogenum F F BS, DS 18S (99/98) Coniophora puteana O NF DS 18S (100/98) Not reported in chestnuts before. Fungus of importance causing indoor wood decay43 Botryosphaeria ribis (anamorph Fusicoccum ribis) NF O DS 18S (100/98) Not reported in chestnuts before. Fungus of importance infecting many trees, including olive, pecan, pistachio, kiwi, apple and citrus. It causes cankers, dieback, death and black fruit rots51 – 53 B. tsugae NF O DS 18S (99/99) Trichoderma viride NF R BS, DS 18S (100/99) In this study it was found in chestnuts directly harvested from the tree and during storage. It has never been reported in chestnuts before and does not appear to cause any postharvest disease. Has been used as a biological control, belonging to the group of antibiotic-producing microorganisms54 Botryotinia fuckeliana (anamorph Botrytis cinerea) NF R DS 18S (99/99) Genus has been reported to cause mold and decay in chestnuts25 and other commodities of economic importance, including berries, apples and grapes, during storage39 Phoma sp. NF R DS 18S (100/99) Genus has been reported to cause significant decay in chestnuts25 and other commodities of economic importance, including papayas and kiwis53,55 Sclerotinia sclerotiorum NF R BS, DS 18S (99/99) Has never been previously reported on chestnuts, but symptoms and pathogenesis may be similar to those of S. pseudotuberosa, causal agent of chestnut black rot.13 Pathogen that significantly affects all annual vegetables, ornamentals and field crops39 Acrospeira mirabilis NF F BS, DS M Gibberella sp. (anamorph Fusarium sp.) R O DS 18S (100/99)-M G. moniliformis (anamorph F. verticillioides) R O DS 18S (100/99) G. zeae (anamorph F. culmorum) R O DS 18S (100/99) G. graminearum (anamorph F. graminearum) R O DS M NF R DS 18S (99/99) Candida sp. F F NS API 20C C. guilliermondii O O NS API 20C Cryptococcus sp. F F NS API 20C Cr. luteolus O O NS API 20C Cr. laurentii O O NS API 20C Rahnella sp. O O NS 16S (99/99) Rahnella aquatilis O O NS 16S (98/97) Bacillus sp. NF R NS 16S (99/99) Methylobacterium sp. O O NS 16S (99/99) Discula campestris Yeasts Shella Has been reported to cause significant decay in chestnuts after harvest and during storage20 Genus has been reported to cause mold and decay in chestnuts, especially during storage,22 – 25,43,45,50 and other commodities of economic importance, causing postharvest pink or yellow molds on vegetables, ornamentals, root crops, tubers, tomatoes and bulbs39 Has never been previously reported on chestnuts. Fungus of importance causing anthracnose in sugar maple, especially in seedlings56 In this study, these microorganisms did not appear to cause postharvest decay in fresh chestnuts. Other microflora survey studies indicated that after harvest a wide range of economically important vegetables and other commodities are often colonized but usually spoiled when they are processed, including chestnuts, sliced onions and shredded lettuce. Sometimes they are also used as antagonist microorganisms against certain postharvest diseases.25,57 – 60 The majority of these microorganisms, including Rahnella sp., Candida sp. and Cryptococcus sp., are widely distributed in nature61,62 F, frequent (identified on ≥80% of affected samples); O, occasional (identified on ≤25% of affected samples); R, rare (identified on ≤5 % of affected samples); NF, not found. BS, symptom appearance before storage; DS, symptom appearance during storage; NS, no symptoms. c 18S (% match forward/reverse)-M, fungus identified using sequencing of 18S-rDNA subunit and microscopic morphology; 18S (% match forward/reverse), fungus identified using sequencing of 18S-rDNA subunit; M, microscopic morphology identification; 16S (% match forward/reverse), bacterium identified using sequencing of 16S-rDNA subunit; API 20C, yeast identified using API 20C yeast identification system and microscopic morphology. a b 4517 J Sci Food Agric 2016; 96: 4514–4522 © 2016 Society of Chemical Industry wileyonlinelibrary.com/jsfa www.soci.org IR Donis-González, DE Guyer, DW Fulbright (a) (b) (c) (d) Figure 1. Chestnuts showing shell mold due to (a–c) Penicillium spp. (P. griseofulvum, P. expansum and P. chrysogenum) and (d) Coniophora puteana. 4518 Belonging to the phylum Deuteromycota, this fungus causes considerable losses in chestnuts during storage. It lacks fruiting bodies, producing conidia asexually. Conidia are produced coiled, with two pale cells and one dark-brown, verrucose, globose terminal cell (20–30 μm diameter).20 Botryosphaeria ribis and S. sclerotiorum were isolated from only a few kernels that presented extreme dark-black decay (Fig. 2d). In some situations, infected tissue became hard and completely mummified. Botryosphaeria ribis and S. sclerotiorum belong to the phylum Ascomycota. Botryosphaeria ribis produces conidia in pycnidia, while the fungus S. sclerotiorum overwinters as sclerotia on or within infected tissues and in the ground. In spring or early summer the sclerotia germinate and produce apothecia, which contain asci, producing ascospores.39 Botryotinia fuckeliana (anamorph B. cinerea) was isolated from grayish, completely decayed kernels. The mycelium appeared to rapidly invade the whole kernel, which became covered with a whitish-gray, cobweb-like mold. Infected kernels became soft, watery and acquired a dark-gray to black coloration (Fig. 2e). Depending on its sexual stage, this fungus belongs to the phylum Ascomycota or Deuteromycota. It causes gray molds or rots of fruits and vegetables both in the field and during storage. It produces abundant gray mycelia and long branches of conidiophores, which contain rounded apical cells bearing colorless or gray, one-celled, ovoid conidia.39 Gibberella sp. (anamorph Fusarium sp.) caused white mold decay. Affected kernels appeared dry, whitish to light-brown and extremely pale. A whitish web-like mycelium could be observed around decayed tissue, usually in the cracks (Fig. 2f ). Depending on its sexual stage, this fungus belongs to the phylum Ascomycota or Deuteromycota. The fungus usually produces colorless mycelia at first, but with age it becomes cream-colored, pale-yellow, pale-pink or purplish. It produces three kinds of asexual spores, microconidia, macroconidia and chlamydospores, but also produces sexual spores, through perithecia, during its sexual phase.39 wileyonlinelibrary.com/jsfa In this study, this microorganism was usually mistaken for early infection by Penicillium spp., and usually both were present. Influence of chestnut harvesting method on microbial populations Non-decaying chestnuts yielded low populations of MAB, molds and yeasts on shells and in kernels when collected on day 0 from trees and the ground. The microbial population increased significantly during storage (P < 0.01) (Figs 3–5). Microbial populations at day 0 ranged from 1.8 to 4.61 log colony-forming units (CFU) g−1 depending on the portion of the chestnut examined (shell or kernel) and the harvesting method (ground or tree). The shell yielded significantly higher (P < 0.01) microbial populations compared with the kernel. In general, populations of molds and MAB tended to increase during 60–90 days of storage regardless of the harvest procedure (Figs 3 and 4). Populations of microorganisms were generally highest in 90-day-old chestnuts at the time of marketing (60–90 days after harvest) (Figs 3 and 4). In the case of molds and MAB, microbial populations increased to 8 and 8.3 log CFU g−1 by day 60 and then decreased to 6.1 and 6.7 log CFU g−1 after 120 days of storage respectively. During storage, mold (P < 0.01) and MAB (P < 0.01) populations of chestnuts harvested directly from the tree were significantly lower than those of chestnuts harvested from the ground (Figs 3 and 4). An irregular growth rate and significant population increase (P < 0.01) were observed in yeasts colonizing the shell. The yeast population on chestnuts collected from the orchard ground increased significantly (P < 0.01) to 8.5 log CFU g−1 during 120 days of storage. Meanwhile, yeast populations from the shell of chestnuts collected directly from the tree were more variable, with a decline in population from 4.7 log CFU g−1 on day 30 to 2.3 log CFU g−1 90 days later. Nevertheless, after 120 days, a significant increase (P < 0.01) to 6.7 log CFU g−1 was observed. During storage, yeast populations on the shell were significantly higher © 2016 Society of Chemical Industry J Sci Food Agric 2016; 96: 4514–4522 Microorganisms on edible chestnuts in Michigan www.soci.org (a) (b) (c) (d) (e) (f) Figure 2. Chestnuts showing kernel decay due to (a, b) Penicillium spp. (P. griseofulvum, P. expansum and P. chrysogenum), (c) Acrospeira mirabilis, (d) Botryosphaeria ribis and Sclerotinia sclerotiorum, (e) Botryotinia fuckeliana (anamorph Botrytis cinerea) and (f ) Gibberella sp. (anamorph Fusarium sp.). Figure 3. Mean mold counts on shells and in kernels of fresh chestnuts during 120 days of storage at 4 ∘ C. 1 Data points followed by the same lowercase letter within the same day are not significantly different at P < 0.05 (ANOVA with post hoc Tukey multiple comparison of means). 2 Overall data points followed by the same capital letter within chestnut part-harvesting method are not significantly different at P < 0.05 (repeated measurement design – ANOVA with post hoc Tukey multiple comparison of means). Error bars indicate standard deviation. (P < 0.01) than those in the kernel. Populations of yeasts on kernels collected from the tree or ground remained relatively constant during storage and were not significantly different (Fig. 5). J Sci Food Agric 2016; 96: 4514–4522 Populations on shell varied from farm to farm, with MAB, molds and yeasts ranging from 4.55 to 8.44, 3.94 to 7.74 and 4.75 to 8.28 log CFU g−1 respectively (Fig. 6). A similar scenario was observed for kernels, with MAB, molds and yeasts ranging from 2.34 to 7.63, 1.99 to 7.69 and 2.68 to 7.24 log CFU g−1 respectively (Fig. 7). Significant differences were observed in shell mold (P < 0.01), MAB (P < 0.01) and yeast (P < 0.01) populations (Fig. 6) and in kernel MAB (P < 0.01) and yeast (P < 0.01) populations (Fig. 7). MANOVA (Wilks’ test) showed that microbial populations differed significantly (P < 0.01) between some farms. Chestnuts from farm C had © 2016 Society of Chemical Industry wileyonlinelibrary.com/jsfa 4519 Farm influence on microbial populations on shell and in kernel of chestnuts To determine the effect of different growing and harvesting conditions on postharvest microbial populations of chestnuts on various farms in Michigan, chestnuts were collected from seven different growers at Chestnut Growers, Inc. on the day of delivery. Figure 4. Mean MAB counts on shells and in kernels of fresh chestnuts during 120 days of storage at 4 ∘ C. 1 Data points followed by the same lowercase letter within the same day are not significantly different at P < 0.05 (ANOVA with post hoc Tukey multiple comparison of means). 2 Overall data points followed by the same capital letter within chestnut part-harvesting method are not significantly different at P < 0.05 (repeated measurement design – ANOVA with post hoc Tukey multiple comparison of means). Error bars indicate standard deviation. www.soci.org Figure 5. Mean yeast counts on shells and in kernels of fresh chestnuts during 120 days of storage at 4 ∘ C. 1 Data points followed by the same lowercase letter within the same day are not significantly different at P < 0.05 (ANOVA with post hoc Tukey multiple comparison of means). 2 Overall data points followed by the same capital letter within chestnut part-harvesting method are not significantly different at P < 0.05 (repeated measurement design – ANOVA with post hoc Tukey multiple comparison of means). Error bars indicate standard deviation. Figure 6. Total MAB, mold and yeast counts from shells of fresh chestnuts after harvest from seven Michigan farms. 1 Values followed by the same letter within organisms are not significantly different at P < 0.05 (ANOVA) (Tukey multiple comparison of means). Error bars indicate standard deviation. significantly higher microbial populations than chestnuts from farm D, with chestnuts from other farms showing microbial populations between those of farms C and D (Fig. 7). 4520 Farm influence on microbial quality of chestnuts To determine the effect of different growing and harvesting conditions on the severity of postharvest mold and kernel decay, chestnuts were collected from the seven different growers when received at Chestnut Growers, Inc. On receiving day (day 0), significant differences in mold severity (P < 0.05) and kernel decay incidence (P < 0.05) were observed between growers (Fig. 8a). Overall, during 60 days of storage, a significant difference in shell mold severity (P < 0.01) but not in kernel decay incidence was observed between growers (Fig. 8b). Farms C, B and E showed significantly higher shell mold severity compared with other farms, with values of 2.8, 1.5 and 1.9 log CFU g−1 respectively. wileyonlinelibrary.com/jsfa IR Donis-González, DE Guyer, DW Fulbright Figure 7. Total MAB, mold and yeast counts from kernels of fresh chestnuts after harvest from seven Michigan farms. 1 Values followed by the same letter within organisms are not significantly different at P < 0.05 (ANOVA) (Tukey multiple comparison of means). Minimum detectable level (MDL) = minimum possible count (0.5) × minimum dilution factor × inoculated aliquot (100 μL). Error bars indicate standard deviation. CONCLUSION Postharvest shell mold and kernel decay affect a significant portion of chestnuts worldwide and about 20% of the chestnuts produced in Michigan. Results showed that fungi, bacteria and yeasts increased significantly during storage. The extent of increase was dependent on the part of the chestnut (shell or kernel), the collecting method (tree or ground) and the farm from which is was harvested. Highest populations were found on the shells of chestnuts collected from the ground. These results are not surprising as the shell is continually exposed to the environment while the kernel is protected by the shell and pellicle. Molds were the most noticeable organisms associated with the shell and kernel decay of chestnuts during refrigerated storage (4 ∘ C). Similar problems related to mold decay have also been reported in Asia, Europe, South America and North America.10,13,21 – 23,26,42,43 The fungal flora responsible for this infestation is diverse and appears to be strongly influenced by preharvest, harvest and storage conditions. With the traditional method of harvest, chestnuts that have fallen to the ground are collected by workers or mechanical harvesters.44 In Italy and France, attempts have been made to collect chestnuts in nets either on the ground or suspended above the ground, mainly to ease chestnut collection45,46 and reduce molding, especially by S. pseudotuberosa.45 However, a recent study indicated that suspended nets did not reduce chestnut mold after harvest or during storage.25 Regardless, in the present study, chestnuts harvested from the orchard floor showed more contamination measured during storage than those harvested directly from the tree. Microbial populations were much higher on chestnut shells than in kernels. In general, only two fungal genera caused obvious mold symptoms with chestnut shells after harvest and during storage. In order of importance, these were Penicillium spp. (P. expansum, P. griseofulvum, P. chrysogenum) and C. puteana. However, at least five different genera of filamentous fungi were associated with infected chestnut kernels. These microorganisms, which included Penicillium spp. (P. griseofulvum, P. expansum, P. chrysogenum), A. mirabilis, B. ribis, S. sclerotiorum, B. fuckeliana (anamorph B. cinerea) and Gibberella sp. (anamorph Fusarium sp.), caused the largest amount of loss. Other organisms might be associated with chestnut shell mold and kernel decay in Michigan, but during this two-season study, only these species were repeatedly associated © 2016 Society of Chemical Industry J Sci Food Agric 2016; 96: 4514–4522 Microorganisms on edible chestnuts in Michigan www.soci.org Figure 8. Shell mold severity and kernel decay incidence from seven Michigan farms during (a) 0 day storage at 4 ∘ C and (b) 60 day storage at 8 ∘ C. 1 Values followed by the same letter within quality index are not significantly different at P < 0.05 (repeated measurement design – ANOVA) (Tukey multiple comparison of means). Error bars indicate standard deviation. with postharvest shell mold and kernel decay. Similar findings have been reported for chestnuts harvested in France, Italy, Australia, Chile, the USA and other countries.13,20 – 24,26,27 This was the first survey to associate C. puteana, B. ribis and S. sclerotiorum with chestnut shell mold or kernel decay. Furthermore, S. sclerotiorum, which was found infrequently in our survey, has never been previously reported on chestnuts, but symptoms and pathogenesis may be similar to those of S. pseudotuberosa, the mold responsible for chestnut black rot, which is one of the most important postharvest diseases of acorns (Quercus spp.) in Europe.21,26 Findings concerning differences between mold severity in shells and microbial populations on chestnut kernels among farms demonstrated that location, preharvest and harvesting conditions played an important role in quality and decay of chestnuts, as discussed for other commodities.25,47,48 Variation in microbial populations among farms, increases in populations during storage and variability of populations within the same field during storage suggest multiple preharvest sources of contamination, including soil, feces, irrigation water, water used to apply fungicides and insecticides, insects, inadequately composted manure, wild animals and human handlers.49 Therefore complementary studies on the efficacy of preharvest management, preharvest fungicide applications and path of produce contamination, as well as harvesting methods and storage conditions, must be considered. Furthermore, the interactions between climate and epidemiology of the fungal flora in the field also need to be better understood. Currently, all these factors must be taken into consideration and confirm the need to control the organisms prior to storage to avoid or reduce postharvest mold and decay during storage. These efforts must be in concert with a plan to efficiently identify and manage affected products during harvest and storage. Significantly, no major chestnut shell or kernel pathogens were found during this study. Neither S. pseudotuberosa13 (black rot) nor G. smithogilvyi17 (brown rot) pathogens were detected. Sclerotinia sclerotiorum, a close relative of S. pseudotuberosa, was detected in this study, but it has not been linked to a serious disease of chestnut kernels. ACKNOWLEDGEMENTS J Sci Food Agric 2016; 96: 4514–4522 REFERENCES 1 Fulbright DW, Mandujano M and Stadt S, Chestnut production in Michigan. 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