DanSeed Symposium 2014 10.-11.03.2014 Kobæk Strand In vitro techniques q for propagation p p g and breeding of horticultural crops Traud Winkelmann Institute of Horticultural Production Systems, Leibniz Universitaet Hannover, Hannover Herrenhaeuser Str. Str 2 2, D-30419 Hannover, Germany, Outline 2 Commercial in vitro p production in Germanyy In vitro techniques for plant propagation I vitro In it techniques t h i f plant for l t breeding b di Problems and limitations Somatic embryogenesis in Cyclamen persicum Endophytic bacteria in Prunus avium Summary Traud Winkelmann 11.03.2014 Commercial in vitro propagation in Germany ADIVK (German Tissue Culture Association; www.adivk.de) About 70 members (½ institutes, ½ companies) No. of plants No produced p.a. No of commercial laboratories No. 2002 2003 2004 2005 2006 2007 2008 2009 > 1.000.000 1 000 000 500.000 1.000.000 8 8 8 7 7 7 6 6 6 6 1 2 3 3 2 4 5 4 4 3 100.000 500.000 7 7 6 8 7 4 6 7 8 7 10.000 100.000 7 4 4 5 5 8 7 8 7 10 5 6 8 6 6 2 2 3 5 5 28 27 29 29 26 25 26 28 30 31 <10.000 Total Courtesy: T. Geier, A. Meier-Dinkel ADIVK 3 2010 2011 Traud Winkelmann 11.03.2014 Commercial in vitro propagation in Germany 50 48,901 Small fruits 45 40 Woody plants Perennials incl. aquatic plants Production n [million plantts] Orchids 35 30 Other ornamental plants 33 543 33,543 Total 25 20 15 10 4,575 5 3,605 3,441 0 2,564 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 Year (Winkelmann et al. 2006, PCTOC 86: 319-327) 4 Traud Winkelmann 11.03.2014 Principle ways of plant propagation in vitro 90-95 % 5 George et al. (2008) Traud Winkelmann 11.03.2014 Axillary shoot formation Commercially most important Pros: + Easy + Applicable to many genotypes and species + Low risk for somaclonal variation Cons: - Labour intensive, therefore expensive - Difficult to automate - Needs several culture steps with different requirements regarding media (rooting = extra step) 6 Traud Winkelmann 11.03.2014 Culture systems for in vitro propagation Culture on solid media + High plant quality - Solidifying agents: expensive - Limited numbers per vessel/shelf… Culture in liquid media + Easy handling + Fast growth and propagation + Scale-up and automation possible - Physiological disorders - Risk of contaminations TIS = temporary immersion systems + High g plant p qualityy q + Fast growth and propagation + Scale-up and automation possible - Risk of contaminations - High prices for vessels 7 11.03.2014 Traud Winkelmann http://perso.wanadoo.fr/vitropic/rita/en/ritanim.htm Foto: S. Richartz [email protected] 8 11.03.2014 Traud Winkelmann 8 In vitro techniques for plant propagation summary 9 Commercial micropropagation successful in plant species that are Difficult to propagate by conventional means Efficiently propagated in vitro High-priced Different ways of propagation and culture systems are described, but almost exclusively used for production: Axillary shoot formation Culture on solid media in relatively small vessels Traud Winkelmann 11.03.2014 1. Production of disease-free plants Meristem/ meristem tip culture Thermotherapy Cryotherapy Free of pathogens Important for all vegetatively propagated ornamentals (e.g. Pelargonium, Chrysanthemum, petunias), potato berry fruits potato, 3 days 10 meristematic dome meristem tip Jansen et al. (1984) Success in establishing 4 weeks Traud Winkelmann 6 weeks Photos: Hydrangea y g by A. Doil 11.03.2014 Meristem tip culture in Dahlia 1 mm (MSc Thesis Sabine Oster) 6 weeks 6 weeks 0,5 cm 1 cm 1 cm 2 weeks 10 d 1 cm 11 Traud Winkelmann 11.03.2014 TSV (Tobacco Streak Virus) detection Original plants M pC D6 D10 D11 D13 D14 D15 D16 D17 D18 D19 D20 D21 D22 nC M 17 out of 21 genotypes infected (81%) TSV‐ amplificate 316 bp After meristem tip culture M pC D8.2B D2.1A D5.2A D5.2B D5.2D nC M Elimination of TSV in 9 genotypes. TSV‐ amplificate 316 bp Oster et al. DGG p proceedings g (2013) 12 Traud Winkelmann 11.03.2014 DMV (Dahlia Mosaic Virus) detection After meristem tip culture Original plants L Dvf Dvf 1 2 3 4 5 6 7 8 nC L L 1 2 3 4 5 6 7 8 nC L DMV DMV690 bp All tested dahlias were infected with DMV (100 %, n = 77) Oster O t ett al. l DGG proceedings di (2013) 13 Traud Winkelmann 11.03.2014 2. Interspecific hybridisation 1 mm 2 14 Many ornamentals = recent or ancient interspecific hybrids Potential for novelties not fully tapped Identification of barriers by observing in situ pollen tube growth Pre-zygotic barriers in vitro fertilisation Post-zygotic Post zygotic barriers embryo rescue Traud Winkelmann pre-zygotic postzygotic 11.03.2014 3 4 Overcoming post-zygotic crossing barriers in Helleborus Important factors: Cross combination Cross direction Time of preparation Explant type Meiners and Winkelmann, Plant Biology (2012) 15 Traud Winkelmann 11.03.2014 Embryo rescue and g genetic distance Number Genetic distance ♀x♂ 0.069-0.264 all interspecific crosses crosses carpels prepared ovules cultured hybrids obtained 661 3304 40885 217 0.5 %# 8 37 372 111 517 5287 Successful within sections 0 069 0.069 within ithi Chenopus Ch 0.081-0.141 within Helleborastrum 97 26 % 106 2% Successful between sections 0.241 H. foetidus x H. argutifolius 21 51 307 0 255 0.255 H. x hybridus x H. argutifolius 15 61 578 0.264 H. x hybridus x H. niger 147 468 4640 #percentage 16 of all cultured ovules 2 0.7 % 1 0.2 % 11 0.2 % Meiners and Winkelmann, Plant Biology (2012) Traud Winkelmann 11.03.2014 3. In vitro mutagenesis (i l di polyploidisation) (including l l idi ti ) In vitro mutagenesis: Avoiding chimeras High number of cells in a small area Closed environment Mutagens better taken up High propagation rate Polyploidisation: Colchicine, Oryzalin,... Mutagenesis: X- or gamma rays X Chemicals (NMH, EMS) Transcription activator-like effector nucleases (TALENs)… 17 Traud Winkelmann Pierik (1987) after Haccius and Hausner (1975) 11.03.2014 3. In vitro mutagenesis Flower colour and shape Growth habit Leaf variegation 18 Blütenfarbe (55 %) Blüt f Blütenform und d –größe öß Blattform und -farbe Pfl Pflanzenhabitus h bi Traud Winkelmann Schum (2003) 11.03.2014 4. Genetic transformation Transformation 19 George et al. (2008) Traud Winkelmann 11.03.2014 5. Production of (double) haploid plants Androgenesis Anther culture Mi Microspore culture lt Gynogenesis Ovary culture Ovule O l culture lt Regeneration of haploid plants Polyploidisation to produce double haploids Important for F1 hybrid breeding programs: e.g. rape seed, Brassica, begonias petunias, begonias, petunias cyclamen, cyclamen lily lily, Helleborus, … (Reynolds 1997) (Eeckhaut et al. 2001) 20 Traud Winkelmann 11.03.2014 5. Production of (double) haploid plants Less successful compared p to agricultural g crops p Publications available for many ornamentals (Ferrie and Caswell 2011) Strongly genotype-dependent Could be ideally combined with mutation induction and genetic transformation Future approaches may focus on centromeremediated genome elimination (Ravi and Chan 2010) Arabidopsis CENH3 Mutated centromere-specific histone gene 21 Traud Winkelmann 11.03.2014 6. Protoplast p culture and fusion Protoplast culture direct transformation somatic hybridisation (protoplast fusion) fundamental research (single cell level) protoplast isolation protoplast l culture l 22 starting material enzyme treatment purification culture system/immobilisation osmotic potential p plant growth regulators Traud Winkelmann 11.03.2014 Somatic hybridisation Fusion Foto: Petunia, L. Meyer Partner 2 Partner1 PEG Selection of Inhibitor 1 heterofusion products 23 Symmetric Asymmetric Cybrids Combination of diploid genomes Combination of extranuclear DNA Inhibitor 2 inhibitors markers manual selection cell sorting l ki regeneration lacking ti ability bilit of one partner Traud Winkelmann 11.03.2014 Somatic hybrids of C. persicum and C. coum PEG mediated protoplast fusion Prange et al. (2012) Plant Cell Reports 31:723-735 24 Traud Winkelmann 11.03.2014 In vitro techniques for horticultural l t breeding b di - summary plant 1. Production of disease-free plants Maintenance and propagation of breeding material 25 2 2. Embryo rescue for interspecific hybrids 3. In vitro mutagenesis (incl. polyploidisation) 4. G Genetic i transformation f i 5. Production of (double) haploid plants 6. Somatic hybridisation Traud Winkelmann 11.03.2014 Problems and limitations Labour costs; Automation Synchronisation S h i ti Quality evaluation Physiological disorders Endophytes Somaclonal variation Genotypic differences 26 Traud Winkelmann 11.03.2014 Somatic embryogenesis in Cyclamen persicum Induction of embryogenic cells/cultures ½ MS-medium 2.0 mg/l 2,4-D; 0.8 mg/l 2iP bar = 0.5 cm ½ MS-medium 2.0 mg/l 2,4-D; 0.8 mg/l 2iP Cell growth (solid or liquid culture) embryogenic Differentiation (A) and Diff ti ti d germination (B) of somatic embryos Conversion B A A non embryogenic Schwenkel and Winkelmann (1998) Plant Tiss. Cult. Biotechnol. 4 (1): 28 - 34 27 hormone-free ½ MS-medium Traud Winkelmann 11.03.2014 Somatic embryogenesis in Cyclamen persicum 28 Applicable for many genotypes Generally true to type regenerants Traud Winkelmann 11.03.2014 Applications pp in plant p propagation p p g 1. Propagation of parental lines of F1 h b id hybrids (numbers needed: ~1,000) 2 2. Propagation P ti off sterile t il iinterspecific t ifi hybrids (‘Odorella‘) ((numbers needed: ~500,000) , ) 3. Mass propagation of single elite genotypes, artificial seed Foto: A. Ewald, IGZ Winkelmann et al. (2004) HortScience 39 (5): 1093-1097 29 Traud Winkelmann 11.03.2014 Limitations and drawbacks Genotypic differences in regeneration ability and regeneration efficiency Asynchronous formation and development of somatic embryos Malformations/ fused somatic embryos Precocious germination Loss of embryogenic competence Secondaryy somatic embryos y Insights in physiology of embryogenesis b i (transcriptomics/proteomics) needed Photos by S. Ratjens and from Model = zygotic embryo Hoenemann et al. (2010) 30 Traud Winkelmann 11.03.2014 PhD project Christina Rode Protein extraction – Plant material Zygotic embryos Somatic embryos 240 embryos in torpedo stage (80 mg) 1cm 1cm 1mm Traud Winkelmann 1mm 11.03.2014 PhD project Christina Rode Protein separation by 2D SDS-PAGE 4 biological and technical replications about b t 1,000 1 000 spots/gel t / l 32 Traud Winkelmann 11.03.2014 Evaluation of gels zygotic embryo PhD project Christina Rode somatic embryo >1.5 in SE 1,013 spots p in total >1.5 in ZE 137 spots higher abundant in zygotic embryos 109 spots higher abundant in somatic embryos 11.03.2014 Traud Winkelmann 33 Protein identification (cooperation with D. Heintz and A. Van Dorsselaer, Strasbourg) Zygotic embryos Somatic embryos Total Spots p eluted 900 37 937 For mass spectrometry 263 37 300 Proteins identified 229 32 261 87 % 11.03.2014 Traud Winkelmann 34 Rode et al. (2011a) Proteins of high abundance in somatic embryos somatic embryo 11.03.2014 Traud Winkelmann 35 Proteins of high abundance in zygotic embryos zygotic embryo Rode et al. (2011a) 36 Traud Winkelmann 11.03.2014 Enolases 37 Functional enzyme for glycolysis/gluconeogenesis and fatty acid biosynthesis „Small“ Enolases highly abundant in zygotic embryos (MW 1/2-1/3 of functional protein) Novel seed storage proteins? Recycling of amino acids? Traud Winkelmann Rode et al. 2011a Plant Mol Biol 75: 305-319 11.03.2014 Digitial proteome reference map (www.gelmap.de) Rode et al. (2011b) Journal of Proteomics 74: 2214-2219 11.03.2014 Traud Winkelmann 38 Proteomic analysis of somatic embryo b differentiation diff ti ti Experiment A: Embryogenic suspension cultures Transferred to PGR free medium Protein extraction after 1, 3, 7, 21 and 28 days Experiment B: 39 28 d old somatic embryos treated or not with 10 mg/L abscisic b i i acid id Traud Winkelmann Rode et al. (2012) Planta 235: 995-1101 11.03.2014 Rode et al. (2012) 40 Traud Winkelmann 11.03.2014 Alterations in protein abundances during differentiation Callus: enzymes related to energy supply, supply protein metabolism Somatic embryos: controlled proteolysis (1 d and 21d), auxin metabolism, storage proteins, isoelectric point switch in catalase Rode et al. (2012) 41 Traud Winkelmann 11.03.2014 Alterations in protein abundances in response to t ABA - ABA: proteins of primary metabolism and stress response higher abundant g p proteins,, HSP 70 + ABA: storage Rode et al. (2012) Planta 235: 995-1011 42 Traud Winkelmann 11.03.2014 Mwangi et al. (2013) Plant Science 201–202: 52–65 Endosperm p development p Weeks After Pollination (WAP) 0 4 WAP 43 1 2 3 5 WAP 4 5 6 7 WAP Traud Winkelmann 7 8 9 9 WAP 10 11 WAP 11.03.2014 11 Mwangi et al. (2013) MS-based protein identification Zeaxanthin epoxidase (ZEP) Xyloglucan endotransglucosylase F-box protein Ethylene recptor 1 416 291 F-box protein Bet V I allergen family protein Major latex protein Seed maturation protein 326 312 314 179 313 346 176 196 Leucine-rich repeat receptor protein kinase 246 11WAP F-box protein 15 Zeaxanthin epoxidase (ZEP) 349 287 59 Wax synthase y 427 331 Vacuolar processing enzyme (VPE) Annexin CHO metabolism (13) protein processing (12) defence response (6) ABA signalling pathway (4) stress response (3) lipid pathway (2) transport (4) 48 spot => 62 proteins 9 spots p not identified 7WAP 44 Sugar carrier protein C 313, 314 326, 314, 326 346 Traud Winkelmann 11.03.2014 Role of endosperm in embryogenesis Nutrition of the developing embryo Insulates embryo from mechanical pressure imposed by the seed coat Endosperm-embryo signaling influencing 45 Developing embryo Maturation/growth arrest (ABA) Regulates g germination g timing g Developing an artificial endosperm for somatic embryos? Traud Winkelmann 11.03.2014 Endophytes What are Endophytes? Microorganisms internally colonizing plants and establishing neutral or beneficial interactions with their host (Anand et al. 2006) Most endophyte/plant relationships are not well understood. In vitro culture: Often regarded as negative Causing losses during culture, especially during rooting and acclimatisation First reports of beneficial endophytes: Paenibacillus (Ulrich et al. 2008, PCTOC 93: 347-351) 347 351) 46 Traud Winkelmann 11.03.2014 Prunus avium for timber production Fast growing hardwood for the production of high quality furniture. B Breeding di goals: l straight t i ht stem, t good d wood d quality, fast growth. To achieve these characteristics single trees with a good habitus are selected and propagated as in-vitro clones. A mixture of several Prunus avium clones in each batch to ensure plant diversity in the field. 47 Traud Winkelmann 11.03.2014 (Mona Quambusch, PhD project) In vitro culture of Prunus avium 48 Traud Winkelmann 11.03.2014 (Mona Quambusch, PhD project) Endophytes in Prunus avium Identification of endophytic bacteria Quantification of endophytes (qPCR) in different culture phases under stress conditions Understanding the balance of endophytic bacteria Isolation of beneficial bacteria Inoculation Inoc lation of cultures c lt es with ith beneficial bacteria bacte ia (cooperation with Institut für Pflanzenkultur, Schnega) 49 COST action FA1103: www www.endophytes.eu endophytes eu Traud Winkelmann 11.03.2014 (Mona Quambusch, PhD project) Identification of bacteria Culture-dependent p approach DNA from bacterial isolates 50 Cultureindependent approach DNA extracted from plant material Traud Winkelmann 11.03.2014 Identification of bacteria Isolation of bacterial endophytes Pure culture 51 Asterria ± no bacteria Demeter + Genotypes Neptun + N Plant material Growth media: nutrient agar and medium #523 (Viss et al al. 1991) Cultivation at RT for 5 weeks Traud Winkelmann 11.03.2014 Identification of bacteria Neptun (+) Three bacterial isolates tested (N-I2, N-I3, N-I4). The sequences are identical. 99% identical to Rhodopseudomonas (genus), phylum Proteobacteria. Demeter (+) Two bacterial isolates sequenced sequenced. D-I1: 100% identical to Microbacterium ( (genus), ) phylum h l Actinobacteria. b D-I3: (g ), 100% identical to Bacillus (genus), phylum Firmicutes. Quambusch et al. (2014) Tree Physiology: accepted 52 Traud Winkelmann 11.03.2014 Identification of bacteria PCR on 16S rDNA - - ± ± + + bacterial amplicon, amplicon mitochondrial amplicon * Indicates amplicons used for cloning and ARDRA DNA extracted from in vitro plant material of propagation phase Primers used: d 799ff and d 1492r. (Chelius and Triplett, 2001) 53 Traud Winkelmann 11.03.2014 Identification of bacteria Amplified rDNA Restriction Analysis (ARDRA) Restriction patterns of 95 bacterial 16S rDNA fragments of a plant sample of Neptun (+). 54 Traud Winkelmann 11.03.2014 (Mona Quambusch, PhD project) Identification of bacteria Results of culture-independent analysis Relattive propo ortion of clones Endophytic population of four Prunus avium genotypes 55 100% 80% Rhodopseudomonas spp. 60% other α-Proteobacteria 40% Microbacterium oba u spp spp. 20% Mycobacterium spp. uncultured bacterial clone 0% Fama - Achilleus - Neptun + Demeter + Prunus genotype Traud Winkelmann 11.03.2014 (Mona Quambusch, PhD project) Identification of bacteria Summary of results from culture independent and -dependent method Phylogenetic tree based on 16S rDNA showing the relationship of clones and isolates from different Prunus avium genotypes to reference sequences. 56 Traud Winkelmann 11.03.2014 Quambusch et al. (2014) Tree Physiology: accepted Inoculation with Endophytes Experimental design Two genotypes: Fama(–) and Achilleus (–) Inoculation with two isolates: N-I-2 (Rhodopseudomonas) and D-I-1 (Microbacterium) 5 min treatment with bacterial suspension in 10mM MgSO4 Evaluation of rooting after three weeks, n = 8 vessels with 5 shoots ** * *** ** Asterisks indicate significant differences between the treatments and corresponding control by Dunnett’s test (*, ** and *** indicate p ≤ 0.05, 0.01 and 0.001 respectively). 57 Traud Winkelmann 11.03.2014 Summary 58 In vitro culture techniques Diverse applications in propagation and breeding Potential not fullyy tapped pp Deeper understanding of regeneration processes aspired Use of molecular tools reasonable New view on endophytes? New plant growth regulators Traud Winkelmann 11.03.2014 References MEINERS, J., DEBENER, T., SCHWEIZER, G. AND T. WINKELMANN (2011): Analysis of the taxonomic subdivision within the genus Helleborus by nuclear DNA content and genome-wide DNA markers. Scientia Horticulturae 128: 38-47 MEINERS, J. AND T. WINKELMANN (2012): Evaluation of reproductive barriers and realisation of interspecific hybridisations depending on the genetic distances between species in the genus Helleborus. Plant Biology, 14: 576-585 MWANGI, J.W., RODE, C., COLDITZ, F., HAASE, C., BRAUN, H.P. AND T. WINKELMANN (2013): Proteomic and histological analyses p development p in Cyclamen y persicum as a basis for optimization p p of somatic embryogenesis. y g Plant of endosperm Science 201–202: 52–65 OSTER, S., MAISS, E. AND T. WINKELMANN (2013): Detection and elimination of plant viruses in Dahlia. DGG-Proceedings Vol. 3, May 2013, No. 3: 1-5, DOI: 10.5288/dgg-pr-03-03-so-2013 http://www.dgg-online.org/proceedings/vol-032013/dgg-pr-03-03-so-2013.pdf QUAMBUSCH, M., M PIRTTILÄ. A.M., A M MYOSORE, V. V T., T WINKELMANN, T. T AND M. M BARTSCH (2014): Endophytic bacteria in plant tissue culture: differences between easy- and difficult-to-propagate Prunus avium genotypes. Tree Physiology (accepted) PRANGE, A.N.S., SEREK, M., BARTSCH, M. AND T. WINKELMANN 2010: Efficient and stable regeneration from protoplasts of Cyclamen coum Miller via somatic embryogenesis. Plant Cell Tiss. Org. Cult. 101:171–182 PRANGE, A.N.S., BARTSCH, M., MEINERS, J., SEREK, M. AND T. WINKELMANN (2012): Interspecific somatic hybrids between C l Cyclamen persicum i and d C. C coum, two t sexually ll incompatible i tibl species. i Plant Pl t Cell C ll Rep. R 31:723-735 31 723 735 RODE, C., GALLIEN, S., HEINTZ, D., VAN DORSSELAER, A., BRAUN, H.-P. AND T. WINKELMANN (2011A): Enolases: Storage compounds in seeds? Evidence from a proteomic comparison of zygotic and somatic embryos of Cyclamen persicum Mill. Plant Mol Biol 75: 305-319 RODE, C., SENKLER, M., KLODMANN, J., WINKELMANN, T. AND H.-P. BRAUN ((2011B)): GelMap p – A novel software tool for building g and presenting proteome reference maps. Journal of Proteomics 74: 2214-2219 RODE, C., LINDHORST, K., BRAUN, H.-P. AND T. WINKELMANN (2012): From callus to embryo - a proteomic view on the development and maturation of somatic embryos in Cyclamen persicum. Planta 235: 995-1011 SCHWENKEL, H.-G. UND T. WINKELMANN (1998): Plant regeneration via somatic embryogenesis from ovules of Cyclamen persicum Mill.. Mill Plant Tiss. Tiss Cult. Cult Biotechnol. Biotechnol 4 (1): 28 – 34 WINKELMANN, T., MEYER, L. UND M. SEREK (2004): Germination of Encapsulated Somatic Embryos of Cyclamen persicum. HortScience 39 (5): 1093-1097 WINKELMANN, T., MUßMANN, V. UND M. SEREK (2004): Cryopreservation of embryogenic suspension cultures of Cyclamen persicum Mill. Plant Cell Rep. 23 (1-2): 1-8 WINKELMANN, T., SPECHT, J. AND M. SEREK 2006: 2006 Efficient ff plant l regeneration ffrom protoplasts l isolated l d from f embryogenic b suspension cultures of Cyclamen persicum Mill. Plant Cell Tiss. Org. Cult. 86: 337-347 59 Traud Winkelmann 11.03.2014 Acknowlegdements: Melanie Bartsch Svenja Ratjens Jenniffer Mwangi Christina Rode Samuel Breselge Cathleen Neitsch Annika Prange Mona Quambusch Julia Meiners Barbara Raffeiner Maike Warwas Viola Mussmann Ewa Schneider, Bärbel Ernst, Friederike Schröder Hardy Rolletschek, Henning Tschiersch (IPK Gatersleben) Hans-Peter Braun (Leibniz Universität Hannover) Dimitri Heintz, Alain van Dorsselaer (University Strasbourg) Karsten Niehaus (Universität Bielefeld) Anna Maria Pirttilä (University of Oulu) 60 Traud Winkelmann 11.03.2014
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