Section 7.3 Molecular Geometry and Lewis Dot Structures 7.3 Molecular Geometry and Lewis Dot Structures Molecular formulas and bonding Everyone knows that the formula for water is H2O. This tells us that two hydrogens and one oxygen bond together to form a molecule of water. However, it doesn’t tell us how they are bonded together. Are the hydrogen atoms attached to each other? You could imagine both possibilities shown in the diagram on the right. One is correct and one is not. Lewis structures are a convenient tool for figuring out the correct way to connect atoms into molecules. Lewis dot diagrams If you use the Lewis dot diagrams, you can predict that both hydrogen atoms bond to a central oxygen. You can also predict the formula of H2O. To assemble a molecule from individual atoms, you share one unpaired electron from one atom with an unpaired electron from another atom. Now both electrons “belong” to each atom, and a covalent bond is formed. Let’s see how this would be done to form a water molecule. Solving the molecule puzzle You can think of the Lewis structures for individual atoms like puzzle pieces that can be put together to assemble molecules. The goal is to end up with each atom having no unpaired electrons and to be surrounded by eight valence electrons (unless the atom is hydrogen, in which case two paired electrons should be next to each hydrogen atom). 214 A NATURAL APPROACH TO CHEMISTRY Isomers Same molecular formula but different properties Sometimes there are two or more different but correct ways to fit the atomic puzzle pieces together. This gives you different molecules with the same chemical formula. For example, C2H6O can form ethanol, the alcohol that is found in beer, wine, and liquor. The same C2H6O can also be dimethyl ether, often used in spray cans as a propellant. These two molecules have the same chemical formula but are very different substances with different properties. When you have multiple molecules that can be represented by the same chemical formula, the molecules are called isomers. Isomers are formed by bonding the same group of atoms together in different ways. The diagram shows two isomers of C2H6O. Give three isomers for the formula C3H8O. Show the Lewis dot diagram and the structural formula for each molecule. Asked: The Lewis dot diagrams and structural formulas for the three molecules represented by the formula C3H8O Given: Carbon has four unpaired electrons, hydrogen has one, and oxygen has two. Three carbons, eight hydrogens and one oxygen form each molecule. Relationships: The atoms will bond together such that all unpaired electrons will be paired up with electrons from other atoms. Solve: isomer: a specific structure of a molecule, only used when a chemical formula could represent more than one molecule. A NATURAL APPROACH TO CHEMISTRY 215 Section 7.3 Molecular Geometry and Lewis Dot Structures Double and triple bonds Double and triple bonds Sharing a pair of electrons (one from each atom) is called a single bond. It is possible for atoms to share two or even three pairs of electrons. Sharing two pairs of electrons is a double bond and sharing three is a triple bond. Carbon, nitrogen, and oxygen commonly form double and triple bonds. Order of bond formation The process for writing Lewis dot structures for molecules with double and/or triple bonds is very similar to what you have done already. First you single bond all the atoms together. Once you do this you will find that there are still some unpaired electrons left over. If those unpaired electrons are on two atoms that are already sharing electrons, then you can bring those two unpaired electrons into the same region where the first pair of shared electrons is already drawn. This can only be done with unpaired electrons on two atoms that are already sharing electrons. If, after single bonding all of the atoms together your unpaired electrons are not on two atoms that are already bonded, then you need to change how you originally put the atoms together to form single bonds. 216 A NATURAL APPROACH TO CHEMISTRY Molecular geometry Lewis dot structures are 2D but real molecules are 3D Lewis dot structures can all be drawn on a flat twodimensional piece of paper. However, molecules are three-dimensional (3D) objects. In fact, the precise 3D shape of a molecule is very important in determining its physical and chemical properties, such as boiling point and viscosity. For complex molecules like those typically found in biological systems, shape can make the difference between a drug that treats cancer effectively or one that does nothing at all. VSEPR Using Lewis dot structures, we can predict the shapes of simple molecules and gain insights into shapes of larger ones. Using the Valence Shell Electron Pair Repulsion (VSEPR) theory, you can make predictions about the angles that attached atoms will form. Since the first three letters of VSEPR stand for “Valence Shell Electron,” we are talking about the valence electrons, the ones represented by Lewis dots. The last two letters stand for “Pair Repulsion.” Paired electrons are not shared in chemical bonds, but they do affect the shape of a molecule. Paired electrons repel each other and also repel shared electrons that are involved in a chemical bond. Bonds and electron density Because similar charges repel each other, electrons that are being shared in bonds and unshared pairs of electrons will push away from each other. This repulsion is part of what causes a molecule to form a particular shape. Each bond or unshared pair of electrons represents a region of electron density around an atom. Depending on how many regions of electron density exist, different shapes will be formed. VSEPR (Valence Shell Electron Pair Repulsion): a theory that states that the shapes of molecules are dictated, in part, by the repulsion of the shared electrons and the unshared pairs of electrons. region of electron density: an area represented by shared or unshared electrons around an atom. A NATURAL APPROACH TO CHEMISTRY 217 Section 7.3 Molecular Geometry and Lewis Dot Structures Two areas of electron density Linear bond shape: two points form a line If you rub a balloon against your hair it will grab some electrons from you, making the balloon negatively charged. If you had two negatively charged balloons and brought them close together, they would repel each other because they are both have the same sign of charge. They push away from each other in opposite directions until they are as far away as possible from each other. Repulsion and bond shape The same thing happens when there are two regions of electron density around an atom. The electrons in both regions push away to be as far apart as possible. For example, consider acetylene (C2H2). Around each carbon there are only two areas where electrons are located—the ones being shared in the triple bond between the carbons and the ones being shared in the single bond between the carbon and hydrogen atoms. These electrons repel each other until they are as far away as possible from each other. This causes the molecule to be linear around each of the carbon atoms. There are two isomers for the formula C3H4. Show the Lewis dot diagram for each molecule, and indicate which atoms are at the center of a linear part of the molecules. Asked: The linear parts of each isomer of C3H4 Given: There are two different isomers. Part of each molecule will be linear. The molecules are made from three carbons and four hydrogens. Relationships: Each atom that has two regions of electron density around it will form a linear part of the molecule. Solve: 218 A NATURAL APPROACH TO CHEMISTRY Three areas of electron density Three points form a plane Now imagine that you have three negatively charged balloons. Again they will repel each other and move as far away from each other as they possibly can. In this case the balloons will point to the corners of a triangle, forming 120° angles between the balloons. Trigonal planar When there are three regions of electron density around an atom, the electrons in all three regions push away until they are as far apart as possible. A good example is ethene (C2H4). There are three areas of electron density around each carbon atom. One area is being shared in the double bond between carbons. The other two are shared in the single bonds between the carbon and each of two hydrogen atoms. When three regions of electron density repel each other, a trigonal planar shape is formed. Acetic acid when mixed with water is commonly known as vinegar and has the formula C2H4O2. The correct isomer has both oxygens bonded to the same carbon. Draw the Lewis dot structure for this isomer and indicate where the molecule will be trigonal planar. Asked: Given: The trigonal planar parts of acetic acid The formula for acetic acid is C2H4O2 and both oxygens are bonded to the same carbon. Relationships: Each atom that has three regions of electron density around it will form a trigonal planar part of the molecule. Solve: trigonal planar: a flat triangular geometry typical of molecules with three regions of electron density surrounding a central atom. The angle between the atoms is 120 degrees. A NATURAL APPROACH TO CHEMISTRY 219 Section 7.3 Molecular Geometry and Lewis Dot Structures Four areas of electron density Tetrahedral geometry: 3D You might think that the shape formed by four charged balloons would look something like an “×” or a “+” with all four balloons as far apart from each other as they can get in a plane. However, there is a way to orient the balloons so that they are even farther apart: Have the balloons point to the corners of a tetrahedron, a pyramid shape formed from four triangles. If the four balloons lie in a plane then the angle between each balloon is 90°, but pointing the balloons into the four corners of a tetrahedron increases the angle to 109.5°, moving them even farther apart. Lone pairs In all of the Lewis dot structures we have seen so far, all of the electrons have been shared between atoms in covalent bonds. When looking at the 3D version of the molecule, each bond represented one or more pairs of shared electrons. However, atoms such as nitrogen and oxygen have some electrons that are already paired, even before any bonding has occurred. These electrons, known as lone pairs, are “invisible” in the balland-stick view of a molecule, but their presence affects the geometry of the molecule just as much (if not more) than the electrons being shared in bonds. lone pairs: electrons that are paired up in a Lewis dot diagram but are not shared between atoms in a covalent bond. 220 A NATURAL APPROACH TO CHEMISTRY Multiple shapes due to four regions of electron density Different geometric shapes There are three shapes that are all based on having electron density in four places around an atom: tetrahedral, trigonal pyramidal, and bent. If there are four single bonds to a central atom, then the four bonded atoms mimic the balloons and form a tetrahedral shape. If there are three atoms bonded to a central atom that also has one unshared pair of electrons, then the unshared pair acts just like a shared pair, repelling the other electrons that are being shared in the three bonds. However, because one corner of the tetrahedron is “missing,” we call this trigonal pyramidal. If there are two atoms bonded to a central atom that has two pairs of unshared electrons, then they all repel as in previous examples, except that the three atoms form a bent shape. What shapes are formed within the isomer of C4H5NO, which has a triple bond connecting nitrogen? Solve: tetrahedral: a shape formed when a central atom is bonded to four other atoms that all point into the corners of a tetrahedron. trigonal pyramidal: a three-dimensional shape formed when a central atom has one unshared pair of electrons and is bonded to three other atoms whose central plane does not include the central atom. bent: a shape formed when a central atom has two unshared pairs of electrons and is bonded to two other atoms. A NATURAL APPROACH TO CHEMISTRY 221 Trans fats and your health You have probably heard how some fats are good and some are bad for you. Terms such as saturated, unsaturated, trans fats, and partially hydrogenated can all be found on nutritional labels. These labels are really describing the different structures of fat molecules. Fats and oils are made by both plants and animals as a means for storing chemical energy. Each molecule is composed of a glycerol backbone containing three carbons, and each carbon is attached to a long-chain fatty acid. Chemists often refer to fats and oils as triglycerides, where tri- means three and glyceride means it has a glycerol backbone. The triglyceride resembles a three-pronged fork, with each prong representing a long-chain fatty acid. The term “saturated” means each carbon in a fatty acid chain is bonded to the largest number of hydrogen atoms possible. Saturated fats such as butter are solid at room temperature, because their long straightchain fatty acids contain only single carbon-to-carbon bonds. This allows them to stack very neatly together, like the logs in the walls of a log cabin. The fatty acids in unsaturated fats contain some carbon-carbon double bonds. These double bonds create kinks along the chain that interfere with the stacking of these fat molecules. They are unable to stack in an organized way. Unsaturated fats, such as olive oil, are liquid at room temperature. Saturated fats can have a negative impact on cardiovascular health. Unsaturated fats, although still high in calories, are beneficial, helping to reduce the bad cholesterol and increase the good type of cholesterol. Originally, scientists thought the story of good fat versus bad fat ended with saturated versus unsaturated. However, “trans fats,” unnatural fats made during the partial hydrogenation process, are as bad as or even worse than saturated fats. The difference in this example is the way the carbons are bonded together around the double bond. 222 A NATURAL APPROACH TO CHEMISTRY If you walk down the grocery store aisles, you will see items being advertised as containing zero grams of “trans fat.” Some food labels also say that they are “heart healthy.” Companies are making sure consumers notice their efforts to reduce or eliminate the harmful trans fats. So what is a trans fat, and why are they considered bad for us? There are two very interesting facts about naturally occurring unsaturated fats. Naturally occurring unsaturated fats form cis double bonds. “Cis” in Latin literally means “on the same side.” This refers to the fact that both hydrogen atoms are on the same side of the double bond. Second, cis fats react more readily with oxygen in the air, resulting in a shorter shelf life for a food product. When cis fats react with oxygen, they break apart, forming smaller chains that taste and smell rancid. Manufacturers discovered that when they used the healthier naturally occurring fats to make their food products, it resulted in a much shorter shelf life. So manufacturers searched for a way to increase the shelf life of items made with unsaturated fat. The method of partial hydrogenation was developed in the early 1900s, and this process allowed for a longer shelf life for food products. CriscoTM was the first product of this new technology. Proctor and Gamble first marketed Crisco in 1911. “Trans” in Latin means “across,” which indicates the hydrogen atoms are on opposite sides of the double bond. When a naturally occurring cis fat is heated at high pressure in the presence of hydrogen gas (H2) and a metal catalyst, such as nickel, one hydrogen atom is added to each carbon in a double bond. This results in the carbon becoming single bonded as it is in a saturated fat. During the partial hydrogenation process only some of the double bonds are transformed to single bonds. The remaining double bonds are converted from cis to trans. This is how trans fat is made. Trans fats are less likely to react with oxygen than the naturally occurring cis fats, and this makes them last longer in food products, increasing shelf life. Originally, it was thought that these fats were healthier for us than saturated fats. Margarine was advertised as a heart-healthy alternative to butter! Doctors recommended margarine for patients with heart disease or high cholesterol up until the late 1980s. Current research has shown that trans fats cause an increase in blood levels of low density lipoproteins (LDLs). These LDLs are known as the “bad” cholesterol, because as they travel in the blood they can deposit some cholesterol in the arteries. It is also important to note that just because a label says “zero grams of trans fats” does not mean it is healthy to consume large quantities. Try to avoid eating these unhealthy fats. Instead, get as much as possible of your daily fat calories from “good oils” such as olive oil. A NATURAL APPROACH TO CHEMISTRY 223 Chapter 7 Review Vocabulary Match each word to the sentence where it best fits. Section 7.1 electrostatic force polarize nonpolar covalent bond polar covalent bond ionic bond 1. The _____________ is what holds atoms together in bonds. 2. When the electrons are shared unevenly between two atoms they cause the molecule to _____________ in that area. 3. A/An _____________ forms when electrons are shared unevenly between atoms. 4. If one or more electrons are transferred between atoms causing them to become positively and negatively charged, then a/an _____________ forms. 5. If two atoms have the same or very similar electronegativities, then the bond between them will be a/an _____________. Section 7.2 free radical antioxidant octet rule covalent bonds unpaired electrons paired electrons 6. A/An _____________ is highly reactive as a result of having one unpaired electron and can do damage to other necessary molecules in your cells. 7. One reason dark-colored fruits and vegetables are considered healthy is their high content of _____________ molecules. 8. The _____________ states that elements transfer or share electrons in chemical bonds to reach a stable configuration of eight electrons. 9. In _____________ electrons are shared between atoms instead of transferred. 224 10. _____________ form bonds and _____________ do not form bonds. Section 7.3 isomer lone pair VSEPR tetrahedral region of electron density trigonal pyramidal bent trigonal planar 11. If an atom has a/an _____________ then some valence electrons will not be shared in covalent bonds. 12. You can predict the shapes of simple molecules using _____________ theory. 13. Each bond and each pair of electrons not shared in a bond around an atom is considered to be a/an _____________. 14. If you can make more then one molecule from the same set of atoms, then each molecule made from that set is called a/an _____________. 15. The shape typically formed in a molecule around an oxygen atom is _____________. 16. There are two shapes that involve four atoms. The one that has all the atoms lying flat is _____________, whereas the one where they can’t be all placed in the same flat surface is _____________. 17. If you had four things that are trying to repel as far away from each other as possible, they will point into the corners of a/an _____________ shape. Conceptual Questions Section 7.1 18. Why don’t all atoms repel each other if the outer part of the atom consists of negative electrons? 19. Describe why sharing electrons causes atoms to bond together. 20. In a ball-and-stick view of a molecule, what do the sticks represent? A NATURAL APPROACH TO CHEMISTRY 21. Describe the main difference between covalent and ionic bonds. 22. The surface view of a molecule makes it look like the molecule is solid. What does this surface really represent? 23. Describe what the red, white, and blue colors applied to some surface views of a molecule tell you about the charge of the molecule near that part of its surface. 24. If a covalent bond is formed when electrons are shared between two atoms, then what must be true of the electronegativity of both atoms? a. The electronegativities must be very different for each atom. b. The electronegativities must be exactly the same for each atom. c. The electronegativities must be similar, but not necessarily the same. 25. Explain the reasoning behind your answer to the previous question. Be sure to talk about the effect an atom’s electronegativity has on the electrons. 26. Describe the difference in how electrons are shared in a nonpolar covalent bond versus a polar covalent bond. 27. Which of the molecules below is bonded together with a polar covalent bond, and how do you know? 28. Which part of molecule “B” in the previous question is partially negative? 31. All of the atoms are the same in a chunk of metal, so they all have the same ionization energy and electronegativity; they are both low. Why don’t we call the type of bonds formed between the atoms in a metal “covalent bonds”? 32. Most molecules are made from more than two atoms bonded together, so there is more than just a single bond in a typical molecule. If one of the bonds is a polar covalent bond, but the rest of the bonds are nonpolar covalent bonds, then what can you conclude? a. The molecule is considered to be nonpolar. b. The molecule is considered to be polar. c. The molecule has a polar part or may be entirely polar. Section 7.2 33. Why do atoms of elements in the same group on the periodic table tend to form the same charge if they become an ion, or form the same number of covalent bonds when bonded in this way to other atoms? 34. Using the properties of ionization energy and electronegativity, explain why atoms of elements from the left side of the periodic table tend to form positive ions but atoms from elements on the right side of the table form negative ions. 35. Which valence electrons are the ones involved in ionization and covalent bonding? a. the unpaired electrons from the Lewis dot diagram of the neutral unbonded atom b. the paired electrons from the Lewis dot diagram of the neutral unbonded atom 36. How many different isomers are shown below? 29. Why does having one atom with low ionization energy and low electronegativity paired with an atom that has high ionization energy and high electronegativity result in the formation of ions and an ionic bond? 30. Why do most atomic level images of ionic substances show many atoms forming a crystal, but images of molecular substances usually just show a specific set of bonded atoms? A NATURAL APPROACH TO CHEMISTRY 225 Chapter 7 Review 37. Are these two molecules isomers of each other or not? Explain. 44. What are the three different possible shapes formed around an atom that is surrounded by four regions of electron density? Quantitative Problems Section 7.1 38. How many valence electrons surround a stable atom in a Lewis dot configuration? 39. Formaldehyde has the formula CH2O and has one double bond to allow all atoms to form stable valence structures. Explain why this initial attempt to come up with the correct Lewis dot structure will not work. Section 7.2 40. Describe in your own words what Valence Shell Electron Repulsion Theory is and what it is used for. 41. A region of electron density is: a. the electrons shared in a bond b. the electrons that form the inner core of the atom c. the valence electrons that are not shared and are called lone pairs d. both A and C 42. Which number of regions of electron density will give you which molecular shapes? Match the correct number with the correct shape. Regions of electron density 2 3 4 Shape tetrahedral linear trigonal planar 43. Describe the difference between trigonal planar and trigonal pyramidal shapes. 226 45. Polar covalent bonds form when electrons are shared unevenly. Because electrons are not fully transferred, this means they form partially negative and partially positive charges on the atoms. What color indicates a partial positive and what color indicates a partial negative charge on parts of a molecule? 46. Calculate the type of bond that will form between the following pairs of atoms: a. carbon and hydrogen b. oxygen and hydrogen c. lithium and bromine d. carbon and oxygen e. fluorine and fluorine 47. Bonds formed between atoms with an electronegativity difference of less than 0.5 are considered to be: a. nonpolar covalent b. polar covalent c. ionic 48. Bonds formed between atoms with an electronegativity difference between 0.5 and 2.1 are considered to be: a. nonpolar covalent b. polar covalent c. ionic 49. Bonds formed between atoms with an electronegativity difference greater than 2.1 are considered to be: a. nonpolar covalent b. polar covalent c. ionic A NATURAL APPROACH TO CHEMISTRY 50. Most of the molecules in gasoline have the formula C8H18. Is gasoline a polar or nonpolar covalent molecule? 51. Some amino acids have polar side chains and some do not. The tyrosine side chain is shown in the green box in the drawing. Section 7.3 56. Write the Lewis dot structure and structural formula for PH3. 57. Write the Lewis dot structure and structural formula for C2H6. 58. Write the Lewis dot structure and structural formula for CBr4. 59. Write the Lewis dot structure and structural formula for CH5N. 60. Write the Lewis dot structure and structural formula for P2H2. 61. Write the Lewis dot structure and structural formula for SiH3N. a. Is the side chain for tyrosine polar or not? b. If it is polar, are all of the bonds polar or just some of them? c. If just some of them are polar which bonds are polar and which ones are not? 52. Describe the relationship between the electron configuration of the noble gases and the charge formed by specific ions. Give at least two examples and use electron configurations to support your answer. 62. Write the Lewis dot structure and structural formula for HCP. 63. Write the Lewis dot structure and structural formula for N2. 64. Write as many isomers of the Lewis dot structure and structural formula for CH3ON as you can. 65. What is the Lewis dot structure and structural formula for erythrose, shown here? 53. Describe the relationship between the electron configuration of the noble gases and the number of covalent bonds formed by specific atoms. Give at least two examples and use electron configurations to support your answer. 54. What is the most stable number of valence electrons to have and how do you know? 55. What ratio of ions will be formed in the following substances, so that the positively charged ions will cancel out the negatively charged ions? a. sodium sulfide (Na and S) b. magnesium chloride (Mg and Cl) c. aluminum oxide (Al and O) 66. For each of the previous problems (58, 59, 62, and 64) describe how many regions of electron density exist for the carbon atoms in those molecules. 67. If part of a molecule is linear, what is the angle formed between adjacent bonds? 68. If part of a molecule is trigonal planar, what is the angle formed between adjacent bonds? 69. If part of a molecule is tetrahedral, what is the angle formed between adjacent bonds? A NATURAL APPROACH TO CHEMISTRY 227
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