COBIOT-861; NO. OF PAGES 7 Available online at www.sciencedirect.com Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application Andreas Tiehm and Kathrin R Schmidt Because of a range of different industrial activities, sites contaminated with chloroethenes are a world-wide problem. Chloroethenes can be biodegraded by reductive dechlorination under anaerobic conditions as well as by oxidation under aerobic conditions. The tendency of chloroethenes to undergo reductive dechlorination decreases with a decreasing number of chlorine substituents, whereas with less chlorine substituents chloroethenes more easily undergo oxidative degradation. There is currently a growing interest in aerobic metabolic degradation of chloroethenes, which demonstrates advantages compared to cometabolic degradation pathways. Sequential anaerobic/aerobic biodegradation can overcome the disadvantages of reductive dechlorination and leads to complete mineralization of the chlorinated pollutants. This approach shows promise for site remediation in natural settings and in engineered systems. Address Department of Environmental Biotechnology, Water Technology Center, Karlsruher Straße 84, 76139 Karlsruhe, Germany Corresponding author: Tiehm, Andreas ([email protected]) Current Opinion in Biotechnology 2011, 22:1–7 This review comes from a themed issue on Environmental biotechnology Edited by Lindsay Eltis and Ariel Kushmaro 0958-1669/$ – see front matter # 2011 Elsevier Ltd. All rights reserved. DOI 10.1016/j.copbio.2011.02.003 Introduction Because of diverse industrial activities, sites contaminated with man-made chemicals are a world-wide problem [1]. Halogenated solvents, especially chloroethenes, are among the most prevalent pollutants in contaminated aquifers [2,3]. At many polluted sites, engineered bioremediation and natural attenuation (NA) processes are considered as possibilities for site remediation since microbiological approaches often require less intervention and are less expensive than physical or chemical remediation measures [4–7]. In the past decades many researchers have focused on anaerobic reductive dechlorination, which transforms the primary contaminants perchloroethene (PCE) and trichloroethene (TCE) to cis-1,2-dichloroethene www.sciencedirect.com (cDCE), vinyl chloride (VC) and ethene. A thorough understanding of halorespiration, also named organohalide respiration, was obtained [1,4,7–12]. During the same period of time aerobic metabolic degradation of VC was extensively studied [13,14,15,16]. In recent years, new aerobic metabolic cDCE degrading processes were reported [3,17,18,19,20,21,22]. Aerobic cometabolic biodegradation represents another remediation approach but requires large amounts of auxiliary substrates [23–25]. It is the objective of this review (i) to summarize current knowledge of bacterial degradation of chloroethenes, (ii) to compare aerobic metabolic with aerobic cometabolic degradation and (iii) to discuss the advantages and drawbacks of field remediation approaches based on anaerobic reductive dechlorination and sequential anaerobic/aerobic biodegradation. Microbial degradation of chloroethenes Depending on the degree of chlorination of the ethene molecule and on the prevailing site conditions biodegradation can occur via reductive dechlorination as well as via oxidative degradation. Reductive dechlorination only takes place under anaerobic conditions. The tendency of chloroethenes to undergo reductive dechlorination decreases as numbers of chlorine substituents decrease. Conversely, chloroethenes more easily undergo oxidative degradation with decreasing numbers of chlorine substituents (Figure 1) [26]. Oxidation of chloroethenes is known to happen under aerobic conditions [21,22,26]. Anaerobic oxidation has been described in laboratory studies [4] but knowledge still remains scarce [12]. It was recently postulated that anaerobic oxidation observed in the field might in truth be aerobic oxidation with very low amounts of oxygen [15]. Anaerobic reductive dechlorination Anaerobic reductive dechlorination or halorespiration has already been extensively investigated and reviewed [1,4,7–12]. Reductive dechlorination is an anaerobic respiration process, using chloroethenes as electron acceptors and hydrogen as electron donor. In engineered bioremediation, hydrogen is typically made available by the addition of organic carbon. The auxiliary substrates added in the field are converted to hydrogen by fermentative bacteria present in the autochthonous microbial community. The hydrogen atoms replace the chlorine Current Opinion in Biotechnology 2011, 22:1–7 Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003 COBIOT-861; NO. OF PAGES 7 2 Environmental biotechnology Figure 1 anaerobic-reductive aerobic-oxidative decreasing with fewer chloroatoms increasing with fewer chloroatoms Cl auxiliary substrates Cl PCE C=C Cl reduced organic carbon H2 Cloxidized organic carbon Cl CO2 H C=C TCE Cl Cl H H ClcDCE C=C Cl Cl H H H2O VC C=C H Cl H H auxiliary substrates ethene C=C H oxidation of auxiliary substrates (electron donors) Cl only needed for cometabolism O2 H reduction of chloroethenes (electron acceptors) oxidation of chloroethenes (electron donors) reduction of oxygen (electron acceptor) Current Opinion in Biotechnology Overview of chloroethene biodegradation (PCE: perchloroethene; TCE: trichloroethene; cDCE: cis-1,2-dichloroethene; and VC: vinyl chloride). atoms one after the other resulting in the typical dechlorination sequence from PCE, via TCE, cDCE and VC down to ethene (Figure 1). Formation of the other dichloroethenes trans-1,2-dichloroethene (tDCE) and 1,1-dichloroethene (1,1-DCE) is possible but rarely observed. The rate of reductive dechlorination decreases with decreasing numbers of chloroatoms. Several groups of bacteria such as Desulfomonile, Dehalobacter, Desulfitobacterium and Desulfuromonas are known to be able to degrade PCE via TCE to the end product cDCE. However, only bacteria of the Dehalococcoides group are capable of performing the complete reductive dechlorination from PCE to ethene [1,26]. Also for Dehalococcoides, the dechlorination of PCE to cDCE is faster and thermodynamically more favourable than the dechlorination from cDCE to VC. The slowest dechlorination step is the final transformation of VC to ethene [1,4,12]. Therefore, an accumulation of cDCE or VC is often observed at contaminated sites [27,28]. Anaerobic reductive dechlorination is widely applied for site remediation, often with the dosage of electron donors as auxiliary substrates (biostimulation) [2] or dosage of microorganisms specialized for reductive dechlorination (bioaugmentation) [6]. Stable carbon isotope fractionation can be used for proof and quantification of anaerobic reductive dechlorination in the field [28]. Molecular biology methods are available for the detection of halorespiring bacteria, providing a useful tool for fast and easy Current Opinion in Biotechnology 2011, 22:1–7 determination of the site-specific degradation potential [6,7,27,29]. Aerobic oxidative degradation Under aerobic conditions, chloroethenes can be oxidized both cometabolically and metabolically. During cometabolic degradation the chloroethenes are only degraded fortuitously. The degrading enzymes are actually produced for the degradation of bacterial growth substrates (named auxiliary substrates) like methane, ethene, ammonium or aromatic pollutants [23–25,26]. Cometabolic degradation has been shown for all chloroethenes [14,24,25,30–35]. Cometabolic degradation of PCE was rarely described, with the latest publication in the year 2000 [35]. It was recently stated that PCE is not degraded by methanotrophs [36]. On the contrary, metabolic degradation denotes the use of a chloroethene as a growth substrate [26]. Metabolic degradation has so far been repeatedly shown for cDCE and VC [3,13,14,15,16,17,18,19,20,21,22]. For tDCE only one report about metabolic degradation was found [18]. Furthermore, VC can serve as an auxiliary substrate for the cometabolic degradation of cDCE [14]. Very recent results show that interactions between different chloroethenes during aerobic metabolic degradation of a chloroethene within a mixture have to be taken into account [22]. With regard to site remediation applications, aerobic metabolic degradation offers several advantages over www.sciencedirect.com Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003 COBIOT-861; NO. OF PAGES 7 Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application Tiehm and Schmidt 3 Figure 2 anaerobic conditions reductive dechlorination aerobic conditions cometabolic oxidation metabolic oxidation electron donors / auxiliary substrates reduced organic carbon / NH4+ H2 NO3- O2 O2 N2 CH4 CO2 II Mn(IV) Mn(II) NH4+ NO3- III Fe(III) Fe(II) … IV TCE, cDCE, VC, ethene I PCE SO42HCO3 S2- HCO3- VC cDCE TCE (PCE) CO2 ClH2O VC cDCE CO2 ClH2O CH4 CH3COOH reduction of chloroethenes and competing TEAs oxidation of chloroethenes and electron donors oxidation of chloroethenes Current Opinion in Biotechnology Comparison of reductive dechlorination with cometabolic and metabolic oxidation in terms of need for auxiliary substrates as electron donors and competing reactions (PCE: perchloroethene; TCE: trichloroethene; cDCE: cis-1,2-dichloroethene; VC: vinyl chloride; and TEA: terminal electron acceptor). The numbers indicate the order of the different respiration processes [5]. aerobic cometabolic degradation (Figure 2, middle and right part). First of all, metabolic degradation does not need any auxiliary substrates. Therefore competition between auxiliary substrates and chloroethenes at the degrading enzyme [24,25,26,30,37] as well as oxygen consumption by the auxiliary substrates [3,21,22] are avoided. There is no need for co-occurrence of contaminants, auxiliary substrates and oxygen within the plume [21]. Groundwater quality is not impaired by oxidation products of auxiliary substrates such as nitrate [24]. Furthermore, for metabolic degradation complete mineralization/assimilation of the organic molecules without intermediary toxic effects is assumed [26]. In consequence, product toxicity by cometabolic degradation products such as epoxides or aldehydes leading to inactivation of the degrading enzymes and cell death [3,24,30,31,35] seems not to be a problem during metabolic degradation. In addition, metabolic conversion proceeds at higher degradation rates [24] and displays higher concentration ranges than cometabolic degradation [38]. The use of aerobic degradation processes for site remediation is described in the literature, but is less common than the use of reductive dechlorination. Cometabolic degradation has been applied in the field for degradation of TCE, 1,1-DCE, tDCE, cDCE and VC [2,36,38–40]. Demonstration as well as application of metabolic degradation in the field appears to be rarer and has so far been reported for cDCE and VC [27,41]. Aerobic degradation can be accompanied by significant stable carbon isotope www.sciencedirect.com fractionation [14,21], which can be used for proof and quantification of aerobic chloroethene biodegradation in the field [27,40]. The development of molecular biology methods for the detection of aerobic degraders is currently underway [26,28,36,42]. Environmental pre-requisites and impacts of reductive dechlorination Anaerobic site conditions and electron donors are needed for reductive dechlorination to take place. In an aerobic aquifer electron donors are first needed to remove competing electron acceptors such as oxygen and nitrate in order to achieve anaerobic conditions [36]. Even when strongly anaerobic conditions are obtained, the halorespiring bacteria still compete for electron donors with other hydrogenotrophs such as sulphate-reducers, methanogens and acetogens (Figure 2, left part) [1,43]. It was observed in the laboratory that reductive dechlorination was slowed in the presence of sulphate reduction [44]. At field sites, nitrate reduction, manganese(IV) reduction, iron(III) reduction and sulphate reduction as well as methanogenesis occurred during stimulation of reductive dechlorination [2,45]. As a consequence of this competition reductive dechlorination consumes only a small percentage of the available electrons [43,44] resulting in the wastage of reducing equivalents/auxiliary substrates [46,47]. This is of great importance for site remediation since electron donors cause significant costs during field application [44]. Current Opinion in Biotechnology 2011, 22:1–7 Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003 COBIOT-861; NO. OF PAGES 7 4 Environmental biotechnology Furthermore, bioclogging can be a problem due to the dosage of high amounts of electron donors [46,47]. cesses in situ (enhanced natural attenuation, ENA) or in engineered systems. Moreover, strongly reducing conditions can lead to the accumulation of harmful products such as hydrogen sulphide and methane [44]. Excess methane formation can even pose an explosion hazard [46,47]. Additionally, reducing conditions can lead to the solubilization of toxic metals in their reduced form [36,44]. These unwanted side-products can be detrimental to groundwater quality and can increase groundwater ecotoxicity [47]. At a PCE/TCE contaminated site in Germany sequential anaerobic/aerobic degradation was found to occur naturally. PCE and TCE are anaerobically reduced to mainly cDCE; reductive dechlorination to VC is restricted to a small anaerobic zone in the plume. Both metabolites are then oxidized metabolically [21,27]. This site-specific degradation scheme was established based on multiple lines of evidence. Corresponding results were obtained from pollutant profiles, redox conditions, characterization of the autochthonous microflora, degradation studies in laboratory microcosms and the assessment of stable carbon isotope fractionation [27]. These assessment methods were reviewed by Tiehm and Schmidt [5]. A related approach was applied by Abe et al. [28], who demonstrated the potential of VC oxidation at a field site in Canada where reductive dechlorination of PCE occurs as a first step. Until now, only bacteria from the Dehalococcoides genus are known for complete reductive dechlorination [1,26]. These bacteria are restricted to anaerobic conditions [29] and are very sensitive to oxygen [37]. Because of their high degree of specialization in terms of usable electron donors and acceptors [7] and their complex nutritional requirements [1,29] they can only thrive under certain environmental conditions and are less versatile and less robust than other halorespiring bacteria [7]. If the environmental conditions are not strictly reducing and therefore not suitable for growth of Dehalococcoides, other dechlorinating bacteria can transform PCE to cDCE resulting in the formation of a cDCE-contaminated plume [27,28]. Even in the presence of Dehalococcoides, unfavourable conditions can stall the halorespiration process following the formation of the carcinogenic VC [1,12,48]. Furthermore, ethene is considered a suspected carcinogen [49,50]. Thus, even the often-intended complete reductive dechlorination to ethene would not result in transformation of chloroethenes into completely innocuous products. Application of sequential anaerobic/aerobic biodegradation According to current knowledge, biodegradation of PCE can only be accomplished with a first anaerobic dechlorination step. However, reductive dechlorination often tends to stall at cDCE/VC [27,28]. Aerobic – especially metabolic – degradation provides a way to entirely mineralize the pollutants [3,26]. Aerobic degradation of cDCE even supersedes the reductive step from cDCE to VC, which is especially useful since reductive dechlorination often stalls at cDCE [2]. Thus, the use of aerobic degradation for complete biodegradation via a sequential anaerobic/aerobic approach is superior to the use of complete reductive dechlorination for field sites lacking naturally strong reducing conditions. In the case of TCE contamination, aerobic cometabolic degradation can be a useful approach, as it requires no anaerobic degradation step [36]. So far, few publications are available describing the natural occurrence of sequential anaerobic/aerobic degradation in the field (NA) or the stimulation of such proCurrent Opinion in Biotechnology 2011, 22:1–7 Sequential stimulation of anaerobic/aerobic biodegradation was applied in pilot tests [51,52]. Electron donors and nutrients were injected into the aquifer in order to create an anaerobic zone, followed by biosparging in order to create an aerobic zone. However, when considering the injection of oxygen into an anaerobic aquifer, precipitation of ferric iron and clogging of groundwater wells must be taken into account [53]. At another field site sequential anaerobic/aerobic biodegradation was stimulated unintentionally. Long years of reductive dechlorination stimulation led to strong methanogenesis, which in turn enabled aerobic cometabolic methanotrophic TCE degradation [2]. Different bioreactor designs were developed in order to achieve sequential stimulation of anaerobic/aerobic biodegradation in laboratory studies. Sequential systems with separate reactors for reductive dechlorination and for aerobic degradation were set up [23,43,54,55]. Other bioreactors were designed to allow anaerobic as well as aerobic biodegradation in a single stage reactor with biofilms containing methanogenic/methanotrophic consortia with a steep oxygen gradient across the biofilm [37,56]. Electron donors were provided by dosage of organic substrates or by formation of hydrogen through water electrolysis [43]. Oxygen was delivered by dosage of oxygen releasing compounds, air or through water electrolysis [43,57]. Conclusion Biodegradation of chloroethenes has been demonstrated to be a technically viable and cost-effective method for site remediation. Microbiological elimination of chloroethenes can be achieved by complete reductive dechlorination or by sequential anaerobic/aerobic treatment (Figure 3). Complete reductive dechlorination of PCE via TCE, cDCE and VC to ethene is possible under www.sciencedirect.com Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003 COBIOT-861; NO. OF PAGES 7 Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application Tiehm and Schmidt 5 Figure 3 industrial site (a) unsaturated zone source areas groundwater flow direction ane meth PCE TCE cDCE uncontaminated oxidized groundwater H2 S VC aquifer saturated zone contaminated reduced groundwater aquitard industrial site (b) unsaturated zone source areas groundwater flow direction PCE TCE uncontaminated oxidized groundwater cDCE VC CO2 Cl- aquifer saturated zone H2O uncontaminated oxidised groundwater aquitard Current Opinion in Biotechnology Schematic view on pollutant distribution and hydrochemical site characteristics following a chloroethene spill (PCE: perchloroethene; TCE: trichloroethene; cDCE: cis-1,2-dichloroethene; and VC: vinyl chloride). Scenario a shows excess electron donor availability and incomplete reductive dechlorination. This scenario results in accumulation of cDCE and VC and anaerobic side reactions such as sulphate reduction and methanogenesis leaving a strongly reducing aquifer behind. Scenario b shows moderate electron donor availability and sequential anaerobic/aerobic biodegradation. This scenario results in complete mineralization of the pollutants and an aerobic aquifer left behind. strictly anaerobic conditions. However, this approach risks the accumulation of cDCE or VC (Figure 3, a). In order to stimulate complete reductive dechlorination at polluted sites, electron donors, that is organic compounds or hydrogen, are injected in excess resulting in competing processes such as sulphate reduction and methanogenesis occurring simultaneously (Figure 3, a). On the contrary, in recent years aerobic metabolic degradation of cDCE and VC has been demonstrated. In contrast to the previously known aerobic cometabolic degradation processes in the presence of auxiliary substrates such as ammonium or methane, metabolic biodegradation does not require the addition of other electron donors. Therefore, the recently discovered metabolic aerobic processes in particular have a strong potential for field application (Figure 3, b). www.sciencedirect.com During the development of bioremediation concepts, site-specific microbial community and hydrochemical conditions must be taken into consideration. In aquifers with strictly anaerobic conditions, complete reductive dechlorination might be the most favourable approach. At contaminated sites with less reducing conditions a sequential anaerobic/aerobic approach is encouraged for field application (Figure 3, b). The main advantages of the sequential anaerobic/aerobic approach are (i) the prevention of accumulation of toxic stable metabolites, (ii) no need for highly sensitive bacteria of the Dehalococcoides genus and (iii) less need for electron donors as auxiliary substrates. Furthermore, aeration following stimulation of reductive dechlorination Current Opinion in Biotechnology 2011, 22:1–7 Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003 COBIOT-861; NO. OF PAGES 7 6 Environmental biotechnology will result in higher groundwater quality than after reductive dechlorination alone (Figure 3, b). 16. Jin YO, Cheung S, Coleman NV, Mattes TE: Association of missense mutations in epoxyalkane coenzyme M transferase with adaptation of Mycobacterium sp. strain JS623 to growth on vinyl chloride. Appl Environ Microbiol 2010, 76:3413-3419. Acknowledgements 17. Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV: The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Appl Environ Microbiol 2008, 74:6405-6416. The authors gratefully acknowledge financial support by the German Ministry of Education and Research (BMBF; grant no. 02WA1052) and the Israeli Ministry of Science, Culture and Sport (MOST). The authors are responsible for the content of this publication. We thank Ian Marshall for proof-reading the manuscript. References and recommended reading Papers of particular interest, published within the period of review, have been highlighted as: of special interest of outstanding interest 1. Futagami T, Goto M, Furukawa K: Biochemical and genetic bases of dehalorespiration. Chem Rec 2008, 8:1-12. 2. 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Electrochim Acta 2009, 54:3453-3459. www.sciencedirect.com Current Opinion in Biotechnology 2011, 22:1–7 Please cite this article in press as: Tiehm A, Schmidt KR. Sequential anaerobic/aerobic biodegradation of chloroethenes—aspects of field application, Curr Opin Biotechnol (2011), doi:10.1016/ j.copbio.2011.02.003
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