Lecture 7 – Cell Communication ch15 BIOL211 Spring 2012 1 Previously we talked about channel proteins, membrane-bound proteins, protein structure, and ATP. This is where all that starts to come together… BIOL211 Spring 2012 2 In this lecture • • • • Types of cell signaling “Conformational change” in proteins Stages in cell signal reception Membrane-bound cell signaling – GPCRs – RTKs – Ion channels • Non-membrane bound signaling • Signal transduction cascades • Second messengers – cAMP – IP3, Ca2++ • Regulating cell signaling BIOL211 Spring 2012 3 How do cells talk to each other? • Cell-to-cell communication is essential for both multicellular and unicellular organisms • Biologists have discovered some universal mechanisms of cellular regulation • Cells most often communicate with each other via chemical signals • For example, the fight-or-flight response is triggered by a signaling molecule called epinephrine BIOL211 Spring 2012 4 BIOL211 Spring 2012 5 Problem: signals must travel from the outside of the cell into the interior The plasma membrane is selectively permeable, and contains embedded proteins One of the functions of these proteins is to act as signaling molecules A signal transduction pathway is a series of steps by which a signal on a cell’s surface is converted into a specific cellular response Two types of signals: those that go through membrane receptors, and those that go inside the cell to intercellular receptors BIOL211 Spring 2012 6 BIOL211 Spring 2012 7 What are signals made of ? • Signaling chemicals can either be small organic molecules or proteins Epinephrine (AKA adrenaline) Stimulates fight or flight response BIOL211 Spring 2012 GH – Growth hormone Stimulates growth and replication in cells BST is a GH in cows 8 What sorts of things do signals signal? • • • • • Cell growth and division Embryonic development Fat storage and breakdown Carbohydrate storage and breakdown Innumerable other things BIOL211 Spring 2012 9 BIOL211 Spring 2012 10 Types of cell signaling • Local (AKA paracrine signaling) – Direct contact through cell-cell junctions or cell-cell recognition – Heart cells, nerve cells • Long-distance (exocrine signaling) – Secretion of chemical messengers called hormones – Testes and ovaries, pituitary gland Through exocytosis!! The ability of a cell to respond to a signal depends on whether or not it has a receptor specific to that signal BIOL211 Spring 2012 11 BIOL211 Spring 2012 12 How do signals interact with the cell? • A signal is secreted, either locally or long-distance • Membrane proteins on target cells recognize a signal – “Lock and key” again – The binding between a signal molecule (ligand) and the membrane protein (receptor) is highly specific BIOL211 Spring 2012 13 “Conformational Change” • Ligand binding triggers a conformational change in the receptor – Proteins are flexible in their backbones – Adding on some atoms in a particular location on the protein will change hydrogen bonding and Van der Waals patterns BIOL211 Spring 2012 14 More examples of conformational changes What is the ligand here? BIOL211 Spring 2012 15 Transmembrane proteins and conformational change • A ligand binds to the extracellular (outside) face, and changes the shape of the entire protein – The intercellular portion now has a different shape – That different shape can now bind different things Ligand binds here Ribose binds outside and causes the this transmembrane protein to change shape. Once it has, the inside portion can now bind ATP ATP binds here BIOL211 Spring 2012 16 Stages of signal reception • Cells receiving signals go through three stages: – Reception – Transduction – Response BIOL211 Spring 2012 17 Figure 11.6-1 EXTRACELLULAR FLUID CYTOPLASM Plasma membrane 1 Reception Receptor Signaling molecule BIOL211 Spring 2012 18 Figure 11.6-2 EXTRACELLULAR FLUID 1 Reception CYTOPLASM Plasma membrane 2 Transduction Receptor Relay molecules in a signal transduction pathway Signaling molecule BIOL211 Spring 2012 19 Figure 11.6-3 EXTRACELLULAR FLUID 1 Reception CYTOPLASM Plasma membrane 2 Transduction 3 Response Receptor Relay molecules in a signal transduction pathway Activation of cellular response Signaling molecule BIOL211 Spring 2012 20 Types of membrane receptors • Water-soluble signals cannot travel through the cell membrane and so rely on membrane receptors to pass along their signal • There are four main types of membrane receptors: – – – – G protein-coupled receptors Receptor tyrosine kinases Ion channel receptors Enzyme receptors BIOL211 Spring 2012 21 G-protein Coupled Membrane Receptors • The largest family of cell-surface receptors (>1000 different members) • A GPCR is a plasma membrane receptor that works with the help of a G protein – A specific portion of its intercellular portion is dedicated to binding G protein • The G protein is an on/off switch – G protein itself has a ligand called GDP (guanosine diphosphate) – If GDP is bound to the G protein, the G protein is inactive BIOL211 Spring 2012 22 Signaling molecule = ligand BIOL211 Spring 2012 23 How it works: GPCRs • A ligand binds the outside face of GPCR • The inside face of GPCR changes, allowing G protein to bind • GDP is phosphorylated into GTP, causing G protein to detach from GPCR – Phosphorylation: adding a phosphate group • G protein with its new GTP can now go activate other cellular enzymes – It does this by hydrolyzing its phosphate group transforming GTP back into GDP BIOL211 Spring 2012 24 GTP vs. ATP and phosphorylation • Both used to power cellular activity • Phosphate is a highly electronegative group, and bends protein backbones around it • Adding a phosphate group (phosphorylating) to any part of a protein will likely change its structure • Some enzymes like to use ATP, some like GTP ATP BIOL211 Spring 2012 GTP 25 Hydrolysis of ATP and GTP • So, breaking a phosphate off (hydrolyzing) ATP not only releases lots of energy… • But that phosphate group can also be attached to a Hydrolyzing = protein, causing its shape to change breaking apart using water • Changing its shape = changing its function • A protein that previously did not bind with anything can be “activated” by adding a phosphate group This is the phosphate group that’s transferred to proteins This also applies to GTP BIOL211 Spring 2012 26 GPCRs: A Summary The players: • • • • • • GPCR: G-protein coupled receptor Ligand G protein GTP Phosphate group cAMP (second messenger, explained in slide 50) The processes: • Phosphorylation • Hydrolysis BIOL211 Spring 2012 27 Receptor Tyrosine Kinases • RTKs work by attaching phosphates to tyrosine residues – These residues are on the intercellular (inside) portion of the protein – Tyrosine is a large, polar amino acid – A residue is one amino acid singled out in a polypeptide chain BIOL211 Spring 2012 28 Figure 11.7c Signaling Ligand-binding site molecule (ligand) Signaling molecule helix in the membrane Tyrosines CYTOPLASM 1 Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Tyr Receptor tyrosine kinase proteins (inactive monomers) Dimer 2 Activated relay proteins 3 Tyr Tyr P Tyr Tyr P Tyr Tyr P Tyr Tyr P Tyr Tyr P Tyr Tyr P 6 ATP Activated tyrosine kinase regions (unphosphorylated dimer) 6 ADP Fully activated receptor tyrosine kinase (phosphorylated dimer) 4 BIOL211 Spring 2012 P Tyr Tyr P P Tyr Tyr P P Tyr Tyr P Cellular response 1 Cellular response 2 Inactive relay proteins 29 How it works: RTKs • Ligand binds to the receptor tyrosine kinase • Two adjacent RTKs “dimerize” – They come together to form one giant transmembrane protein – A dimer is a protein with two of the same subunits (remember quaternary protein structure??) • The new dimer shape allows the phosphorylation of the tyrosines – One phosphate group is popped off ATP and transferred to one tyrosine • The tyrosine residue + phosphate can now activate other enzymes (called relay proteins in the picture) BIOL211 Spring 2012 30 BIOL211 Spring 2012 31 Ion Channel Receptors • These can be the same channels that help with active diffusion • Acts as gates letting ions flow through when activated • When a ligand binds the ion channel receptor, it opens to allow ions like Na+ or Ca2+ • Specific ion channels allow in specific ions – A sodium ion channel won’t let in calcium ions BIOL211 Spring 2012 32 Ion Channel Receptors Yeah, this one is really this simple BIOL211 Spring 2012 33 GABA and Ion Channel Receptors • GABA is a neurotransmitter • When it binds to an ion channel in the cell membrane of a nerve cell, it opens it • This allows the flow of chloride ions into the cell, which helps neurons communicate with each other BIOL211 Spring 2012 34 Enzyme-coupled receptors • An enzyme-coupled receptor will activate an enzyme on the interior of the cell when a ligand is bound BIOL211 Spring 2012 35 Refining our idea of signal transduction Receptor Tyrosine Kinase Or G-protein coupled receptor BIOL211 Spring 2012 This isn’t a strictly accurate picture of ion channels, but they do go through transduction and response 36 If you are reviewing this at home…take a break! And watch a cool fiddling video Warning: loud music (duh) BIOL211 Spring 2012 37 What happens when the signal molecule is able to travel through the plasma membrane? Small or hydrophobic chemical messengers can readily cross the membrane Examples of hydrophobic messengers are the steroid and thyroid hormones of animals Intracellular receptor proteins, not membrane proteins, are the signal receptors in this case Intracellular receptor proteins are found floating in the cytoplasm or nucleus BIOL211 Spring 2012 38 Figure 11.9-1 Hormone (testosterone) EXTRACELLULAR FLUID Plasma membrane Receptor protein DNA NUCLEUS CYTOPLASM BIOL211 Spring 2012 39 Figure 11.9-2 Hormone (testosterone) EXTRACELLULAR FLUID Plasma membrane Receptor protein Hormonereceptor complex DNA NUCLEUS CYTOPLASM BIOL211 Spring 2012 40 Figure 11.9-3 Hormone (testosterone) EXTRACELLULAR FLUID Plasma membrane Receptor protein Hormonereceptor complex Once activated, the hormone-receptor complex can now travel through the nuclear pores into the membrane DNA NUCLEUS CYTOPLASM BIOL211 Spring 2012 41 Figure 11.9-4 Hormone (testosterone) EXTRACELLULAR FLUID Plasma membrane Receptor protein Hormonereceptor complex “Cellular response” in other pictures This entire process is called signal transduction DNA mRNA NUCLEUS CYTOPLASM BIOL211 Spring 2012 42 Summary of Signal Receptors • Membrane receptors – Used for signaling molecules that can’t travel inside the membrane – Three main types: GPCRs, RTKs, ion-gated channels • Intracellular receptors – Used for signaling molecules that can travel through the membrane BIOL211 Spring 2012 43 The role of protein phosphorylation in signal transduction cascades Fischer and Krebs won the 1992 Nobel prize for discovering protein phosphorylation • Phosphorylating a protein will turn it form its “inactive” form to its “active” form – Phosphorylation: the transfer of a phosphate group from ATP/GTP to a protein • The kinases are enzymes responsible for phosphorylation • The phosphatases are enzymes that remove phosphate groups added on by kinases BIOL211 Spring 2012 44 Signal Transduction Cascades • The molecules that relay a signal from receptor to response are mostly proteins • Like falling dominoes, the receptor activates another protein, which activates another, and so on, until the protein producing the response is activated • At each step, the signal is transduced into a different form, usually a shape change in a protein BIOL211 Spring 2012 45 Figure 11.10 Signaling molecule This can be a G protein Receptor Activated relay molecule Inactive protein kinase 1 Active protein kinase 1 Inactive protein kinase 2 The relay molecule activates protein kinase 1 The newly activated protein kinase 1 activates protein kinase 2 through phosphorylation Pi ATP ADP P Active protein kinase 2 PP Inactive protein kinase 3 Pi ATP ADP Active protein kinase 3 PP Inactive protein P ATP P ADP Pi BIOL211 Spring 2012 PP Active protein Cellular response 46 Phosphorylation cascades: How they work Step 1: Ligand binds to the receptor Step 2: Receptor activates a relay molecule This can be through a G protein, a protein activated by an RTK, or another signaling mechanism* Step 3: Relay molecule activates a protein kinase Step 4: That protein kinase activates another protein kinase. There may be two to dozens of kinases activating each other before the cascade gets to the end Step 5: The final protein kinase activates the target protein Step 6: The target protein does its ‘job’ Step 7: The cellular response takes place Phosphorylation cascades can follow GPCRs, RTKs, or ion channels BIOL211 Spring 2012 *Remember, GPCRs, RTKs, and ion channels are just the three common signaling mechanisms, not the only ones 47 Figure 11.6-3 This is where the phosphorylation cascade takes place 1 Reception 2 Transduction Relay molecules in a signal transduction pathway BIOL211 Spring 2012 3 Response Activation of cellular response 48 What is a “cellular response”? • Ultimately, a signal transduction pathway leads to regulation of one or more cellular activities • The response may occur in the cytoplasm or in the nucleus • Many signaling pathways regulate the synthesis of enzymes or other proteins, usually by turning genes on or off in the nucleus • The final activated molecule in the signaling pathway may function as a transcription factor, regulating what genes are expressed where BIOL211 Spring 2012 49 Why study all this nonsense? • RTKs and GPCRs provide common patterns of protein-protein interaction you will see over and over again • RTK signaling gone wrong is a commonly found in cancers • Many drugs depend on disrupting these RTKs, GPCRs, and ion channels receptors to have their effect BIOL211 Spring 2012 50 What signaling pathways look like in the “big leagues” Learning these basic patterns prepare you for this stuff later on (It’s like practicing chords and scales when learning an instrument – learning the underlying structure of music helps you more easily learn actual songs) BIOL211 Spring 2012 51 Let’s refine our signal transduction model a little more G Protein* 1 Reception 2 Transduction 3 Response Activation of cellular response Receptor Tyrosine Kinase Or G-protein coupled receptor The phosphorylation cascade *In the cases where GPCR is used as the receptor BIOL211 Spring 2012 52 Let’s add in something called “second messengers” Second messengers 1 Reception G Protein* 2 Transduction 3 Response Activation of cellular response Receptor Tyrosine Kinase Or G-protein coupled receptor The phosphorylation cascade *In the cases where GPCR is used as the receptor BIOL211 Spring 2012 53 What are second messengers? • Second messengers are molecules or ions that spread throughout a cell by diffusion – Small, water-soluble, non-protein • Second messengers participate in pathways initiated by GPCRs and RTKs • Second messengers also diffuse through gap junctions, allowing signals to rapidly spread through adjacent cells BIOL211 Spring 2012 54 What do second messengers look like? Cyclic AMP (cAMP), calcium ions, inositol triphosphate (IP3), diacylglycerol (DAG), and nitrous oxide (NO) are common second messengers Inositol triphosphate cAMP Diacylglycerol cAMP forms from ATP BIOL211 Spring 2012 55 cAMP as a second messenger • Formation of cAMP is an important part of GPCR signal transduction • Many signal molecules (ligands) trigger formation of cAMP • cAMP is the link between the G protein and the first protein in the phosphorylation cascade • cAMP is produced by adenylyl cyclase + G protein BIOL211 Spring 2012 56 Ligand First messenger G protein G protein-coupled receptor Adenylyl cyclase GTP ATP Second cAMP messenger Protein kinase A Cellular responses BIOL211 Spring 2012 57 Refining our model: how GPCRs work • A ligand binds the outside face of GPCR • The inside face of GPCR changes, allowing G protein to bind • GDP is phosphorylated into GTP, causing G protein to detach from GPCR • G protein with its new GTP can now go activate adenylyl cyclase • Adenylyl cyclase converts AMP to cAMP • cAMP activates protein kinases in the phosphorylation cascade BIOL211 Spring 2012 58 Calcium ions as a second messenger • Calcium ions (Ca2+) act as a second messenger in many pathways – including GPCRs and RTKs • Calcium second messengers are involved in muscle cell contractions, cell division and in plants, greening in response to light • Pathways leading to the release of calcium involve inositol triphosphate (IP3) and diacylglycerol (DAG) as additional second messengers BIOL211 Spring 2012 59 If you are reviewing this at home…STOP Take another break! And look at this cute picture of dogs enjoying a snow day BIOL211 Spring 2012 60 Regulating cell signaling • A stoplight has to have both a red and green light, right? Same with cell signaling • Signaling molecules can not only start and stop a signal transduction pathway, but also increase or decrease its strength Think of a dimmer switch rather than an on/off switch BIOL211 Spring 2012 61 Regulating GPCRs • GPCR signals can be regulated by other proteins • These proteins inactivate adenylyl cyclase, preventing cAMP formation – Even if a signal is sent to the GPCR, nothing will happen since cAMP is not formed Any point of the signal cascade can be inhibited BIOL211 Spring 2012 62 • There is a ‘timer’ on G-proteins – GTP bound to G-protein is unstable and will spontaneously hydrolyze to GDP after a certain amount of time – This inactivates the G-protein • cAMP is rapidly broken down by other enzymes and so has a limited shelf-life as well – This means cAMP’s effects are short-lived unless it is continuously produced BIOL211 Spring 2012 63 Cholera and G-protein regulation • The bacteria responsible for cholera secretes the cholera toxin into nearby intestinal cells • The cholera toxin modifies the G protein so it is unable to hydrolyze GTP to GDP – The G protein is constantly active – Constantly active = constant cAMP production • High cAMP levels in intestinal cells causes them to expel a lot of water and salt • Diarrhea and death ensues BIOL211 Spring 2012 64 “Heart medication” and cAMP regulation • cAMP also causes the smooth muscle cells in arteries to relax • A compound that inhibits hydrolysis of cAMP back to AMP prolongs the arteryrelaxation signal and promotes blood flow • Originally used as a heart medication • Now…? BIOL211 Spring 2012 65 Viagra inhibits cAMP being converted back to ATP Cholera toxin inhibits GTP going back to GDP BIOL211 Spring 2012 66 Fine-tuning the signal response • There are three aspects of fine-tuning to consider – Amplifying the signal (and thus the response) – Specificity of the response – Termination of the signal BIOL211 Spring 2012 67 Signal Amplification • Phosphorylation cascades amplify the cell’s response • At each step, the number of activated products is much greater than in the preceding step • The end result: one ligand binding can have a huge, cell-wide effect – Of course, inhibitory molecules can cancel out all or some of this amplification Enzymes – including kinases in phosphorylation cascades – are not used up in a biochemical reactions and so can make lots of product protein with very little time and energy investment BIOL211 Spring 2012 68 Each new step of the phosphorylation cascade increases the protein levels in the next step If even one of these proteins is ineffective or damaged…what happens? BIOL211 Spring 2012 69 Specificity of the response • Different cells will have different responses to the same signal – This is because different cells have different collections of proteins A heart cell will respond to epinephrine by contracting faster A liver cell will respond to epinephrine by breaking down glycogen into glucose for quick energy BIOL211 Spring 2012 70 Figure 11.18 And of course, there are different types of responses within the same cell Signaling molecule Receptor Relay molecules Response 1 Cell A. Pathway leads to a single response. Activation or inhibition Response 2 Response 3 Response 4 Cell B. Pathway branches, Cell C. Cross-talk occurs leading to two responses. between two pathways. BIOL211 Spring 2012 Response 5 Cell D. Different receptor leads to a different response. 71 Termination of the signal • Inactivation mechanisms are an essential aspect of cell signaling – What happens if you get a neverending signal for cell division? • If ligand concentration falls, fewer receptors will be bound • Unbound receptors revert to an inactive state BIOL211 Spring 2012 72 G-proteins and cancer • Ras is a type of G protein • It is a major culprit in cancer – malfunctioning Ras is present in 25% of all tumors and 90% of all malignant tumors • When switched on, Ras controls cell growth, differentiation, and survival – Ras is switched on when it is bound to GTP • A single-nucleotide mutation in the Ras gene causes it to hold on to GTP – Continually stimulates cell growth - cancer BIOL211 Spring 2012 73 RTKs and cancer • VEGF (vascular endothelial growth factor) is an RTK that stimulates angiogenesis • Cancer cells need large supplies of oxygen and nutrients to grow • Cancer cells trigger angiogenesis to supply themselves with these nutrients BIOL211 Spring 2012 74 RTKs and cancer • Avastin is a drug that mimics the natural ligand of VEGF • When administered, Avastin halts angiogenesis – Body needs angiogenesis to repair wounds – Decreased rate of wound healing and hypertension are common side effects – Extends life on average ~5 months at the cost of $50,000 BIOL211 Spring 2012 75 It doesn’t end there… • These are just some of the important types of signaling pathways • There are LOTS of others – – – – – MAP-KKK pathway PI3K/AKT pathway Notch-mediated juxtracrine signaling Cytokine signaling pathway Etc… Let’s actually apply this stuff and look at a signaling pathway BIOL211 Spring 2012 76 Epinephrine • AKA adrenaline, responsible for the ‘fight or flight’ response • Causes: – Constricted arteries for increased blood flow – Heart to beat faster – Glycogen to break down into glucose for quick energy – Thickened secretions of salivary glands, causing dry mouth – Opens airways for increased oxygen intake BIOL211 Spring 2012 77 • Step 1: Epinephrine is released by the adrenal gland in response to a stimulus Such as a bear • Step 2: Epinephrine then travels through the bloodstream (this is long-distance signaling) • Step 3: Epinephrine finds and attaches to a GPCR called β-adrenergic receptor BIOL211 Spring 2012 78 • Step 4: The β-adrenergic receptor activates a G protein • Step 5: The G protein’s GDP is phosphorylated into GTP • Step 6: G protein detaches from the β-adrenergic receptor and attaches to adenylyl cyclase, activating it • Step 7: Adenylyl cyclase begins creating cAMP from ATP BIOL211 Spring 2012 79 • Step 8: cAMP activates the first protein kinase • Step 9: The phosphorylation cascade takes place, with the number of proteins at each step increasing exponentially • Step 10: In liver cells, protein kinases activate glycogen phosphorylase – Step 10a: In heart cells, protein kinases causes actin and myosin filaments to contract • Step 11: Glycogen phosphorylase converts glycogen into glucose – Step 11a: Heart muscle cell contracts BIOL211 Spring 2012 80 • Step 12: Epinephrine only temporarily binds to the β-adrenergic receptor. As soon as it dissociates, cAMP is no longer produced • Step 13: The phosphorylation cascade quiets • Step 14: Blood vessels relax, heart slows down, glycogen production resumes, etc. BIOL211 Spring 2012 81 BIOL211 Spring 2012 82 Epinephrine in medicine • “Epi pens” containing epinephrine are carried around by people who have life-threatening allergic reactions • Allergic reactions causes the throat to swell and cuts off the airway • Epinephrine opens airways • Also useful in heart attacks to stimulate a heartbeat BIOL211 Spring 2012 83 We’re done! BIOL211 Spring 2012 84 Recommended videos • Cold Springs Harbor – Cell Signals (VERY good and highly recommended, but long) – http://www.youtube.com/watch?v=89W6uACEb7M • GPCR animation (with bonus Pachelbel Canon in D) – http://www.youtube.com/watch?v=FtVb7r8aHco • cAMP signaling – http://www.youtube.com/watch?v=0nA2xhNiAow&feature=related • Self-quiz (lots of these look like good test questions…) – http://www.biology.arizona.edu/cell_bio/problem_sets/signaling/Index.html Ignore questions 5, 10, and 12 If you find any others you like, shoot me an e-mail and I’ll post ‘em on the website! BIOL211 Spring 2012 85 Questions? E-mail me: [email protected] Call me: (818) 321-2490 Skype me: liz.thomas306 The smallest known species of frog, recently discovered! BIOL211 Spring 2012 86
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