Tree Physiology 31, 1319–1334 doi:10.1093/treephys/tpr090 Tree Physiology review: part of a special section on poplars and the environment Growth, physiological and molecular traits in Salicaceae trees investigated for phytoremediation of heavy metals and organics Marta Marmiroli1,3, Fabrizio Pietrini2, Elena Maestri1, Massimo Zacchini2, Nelson Marmiroli1 and Angelo Massacci2,4 1Department of Environmental Sciences, Section of Genetic and Environmental Biotechnology, Faculty University of Parma, Parco Area delle Scienze 11/A, Parma, Italy; of Agro-environment and Forest Biology, National Research Council of Italy, Rome Research Area, Via Salaria Km 29.300, 00015 Monterotondo Scalo (RM), Italy; 3Corresponding author ([email protected]); 4Present address: Institute of Water Research, National Research Council of Italy, Rome Research Area, Via Salaria Km 29.300, 00015 Monterotondo Scalo (RM), Italy 2Institute Received May 19, 2011; accepted August 7, 2011; published online November 2, 2011; handling editor Roberto Tognetti Worldwide, there are many large areas moderately contaminated with heavy metals and/or organics that have not been remediated due to the high cost and technical drawbacks of currently available technologies. Methods with a good potential for coping with these limitations are emerging from phytoremediation techniques, using, for example, specific amendments and/or plants selected from various candidates proven in several investigations to be reasonably efficient in extracting heavy metals from soil or water, or in co-metabolizing organics with bacteria flourishing or inoculated in their rhizospheres. Populus and Salix spp., two genera belonging to the Salicaceae family, include genotypes that can be considered among the candidates for this phytoremediation approach. This review shows the recent improvements in analytical tools based on the identification of useful genetic diversity associated with classical growth, physiological and biochemical traits, and the importance of plant genotype selection for enhancing phytoremediation efficiency. Particularly interesting are studies on the application of the phytoremediation of heavy metals and of chlorinated organics, in which microorganisms selected for their degradation capabilities were bioaugmented in the rhizosphere of Salicaceae planted at a high density for biomass and bioenergy production. Keywords: biomass, chlorinated compounds, clonal selection, contaminated soil and water, genetic engineering, pollutants, poplar, rhizoremediation, willow. Introduction Salicaceae are a very large resource of useful material that can be proposed for approaching many environmental issues (http://www.fao.org/forestry/ipc/32608/en/). More than 30 species are included in the genus Populus, all diploids (2n = 38). These can be crossed to obtain many fertile hybrids with a number of unique and different characteristics that contribute to enrich the diversity of the natural germplasm. The genus Salix includes a number of species even larger than the genus Populus. There are about 450 species of Salix worldwide, ranging from dwarf species to 40 m high trees (Argus 1997). For example, the species used for biomass plantations are mostly shrubs from the subgenus Caprisalix (Vetrix), containing 125 species worldwide. There are many common characteristics between the two genera: they are both spread in similar environments, from the extreme northern regions of Europe and North America to the warmer latitudes of Mediterranean areas (Bradshaw et al. 2000). The small size of the Populus haploid genome (~550 Mbp, only four times that of Arabidopsis, and 400 times smaller than that of Pinus) has favoured the creation of 25 genetic maps and the development of various molecular resources in different species (Cervera et al. 2004, Tuskan et al. 2006, Markussen et al. 2007, Gaudet et al. 2008, Polle and Douglas 2010). © The Author 2011. Published by Oxford University Press. All rights reserved. For Permissions, please email: [email protected] 1320 Marmiroli et al. The haploid genome of most members of the Salix spp. is 500 Mbp, distributed on 19 chromosomes. There is a considerable synteny between Populus and Salix genomes; thus the extended knowledge on Populus genetic features is utilized to gain new insight into the Salix genome resources. For example, two genetic linkage maps in willows were constructed, showing a high degree of genomic conservation between willow and poplar (Berlin et al. 2010). Experimental approaches to phytoremediation studies in Salicaceae Various traits useful for phytoremediation have been studied testing their variation both within and between species in laboratory and in field trials (see Table 1 for willow and for poplar). Due to the long life cycle of trees, technologies able to reduce the time and space needed for the selection of plant material for phytoremediation of various contaminants, such as in vitro culture and hydroponic growth, have been currently utilized. Both these systems represent very useful tools for investigating the effect of metals on plants without the complexity of the interactions between environmental factors that can affect metal bioavailability in the soil. The potential of these techniques for the genetic improvement and study of metal tolerance in Salicaceae plants has been highlighted by Confalonieri et al. (2003) and Castiglione et al. (2007), respectively. Several examples of in vitro studies have been reported in Table 1B concerning response to metal contamination, highlighting the efficacy of the approach in identifying relevant phenotypes. Most recently, Iori et al. (2011) showed a different involvement of thiols, phytochelatins (PCs), organic acids and antioxidant enzymes in the cadmium (Cd) tolerance and accumulation expressed by callus cultures of two parental clones of Populus nigra. Many works have compared the responses of willow and poplar clones to the presence of heavy metals in a hydroponic system for selecting the best phytoremediation material (see Table 1: Šottníková et al. 2003, Lunáčková et al. 2003a, 2003b, Dos Santos Utmazian et al. 2007). Hydroponic culture is a useful method for carrying out rapid selection from a considerable number of individuals. In fact, it allows a reduction in growing and treatment time of the plants, space needed for the experiment, variability due to environmental factors and limitations due to changes in bioavailability of the metal between different soils. In general, data obtained from hydroponic screening need to be confirmed by field performance trials, even though Watson et al. (2003) recently pointed out that the results obtained from hydroponic and field experiments are comparable. The results from the laboratory experiments at times cannot be compared with those coming from field trials due to the extremely controlled conditions of the former in respect to the latter. Therefore, enthusiastic reports of Tree Physiology Volume 31, 2011 laboratory experimental achievements fail to perform at the expected level in the uncontrolled and harsh conditions of the field. Classic techniques investigating the physiological and biochemical traits of tolerance and heavy metal accumulation in plant tissues have recently been integrated by the analytical tools of ‘useful genetic diversity’. The simplest method used is the analysis of polymorphisms. This analysis is known as amplified fragment length polymorphism (AFLP). The polymorphisms do not concern specific target genes; instead, they are distributed randomly over the whole genome. This methodology benefits from the availability of the complete poplar genome sequence (http://genome.jgi-psf.org/Poptr1/Poptr1. home.html) (Tuskan et al. 2006, Sjödin et al. 2009). The molecular genetic diversity approach can take advantage of single-nucleotide polymorphisms (SNPs) in candidate genes (Morin et al. 2004); these markers are co-dominant and highly abundant, and their analysis provides results that are reproducible across laboratories (Gupta et al. 2001). Candidate genes for different traits can be explored using SNPs in the search for diversity with functional consequences (Joseph and Lexer 2008, Chu et al. 2009, Marmiroli et al. 2011). High biomass production and relation with phytoremediation traits The application of trees to phytoremediation is favoured by the possibility of long-term growth and high biomass of tissues accumulating contaminants. Among tree species, Salicaceae species have the capability of manifesting fast growth starting from whips and poles. This is seen as a positive aspect in phytoremediation installations. Among other features, it gives the possibility of deep rooting, by planting the poles at several metres of depth (ITRC 2009). In order to increase the biomass available for phytoremediation, different strategies are applicable: first of all short rotation coppicing (SRC) because it allows the repeated harvest of biomass, thus subtracting contaminants from the soil. Salix spp. can provide the best yield and economic return in SRC high plant density plantations, ~15,000 ha−1, coppiced on a 2–4-year cycle (Bullard et al. 2002). The high biomass production, between 10 and 12 oven dry tonnes (ODT) ha−1 year−1, is due to the ability to rapidly reach a maximum annual increment (Robinson et al. 2004). Other traits favouring biomass production are tolerance of high planting densities, rapid growth rate following coppicing, and vegetative propagation from dormant shoots, all characteristic of plants adapted to disturbed environments. The initial planting density and the length of the rotation strongly influence the time span to reach maximum mean annual increment. For Salicaceae biomass crops, with planting densities from 14,000 up to 18,000 plants ha−1, the maximum mean annual increment is reached Salicaceae and phytoremediation 1321 after 3–5 years (Kopp et al. 1997). Fjell (1985) explains in detail the technical procedures for efficient planting in order to obtain maximum biomass production. At physiological level, coppicing removes apical dominance, allowing the development of secondary bud on the remaining stool into shoots (Paukkonen et al. 1992). Ethylene production caused by coppicing promotes secondary bud development (Taylor et al. 1982), with consequent increased number of shoots on each stool, changes in leaf size and specific leaf area associated with juvenile growth, increased net photosynthetic rates and rapid development of the canopy (Kauppi et al. 1988). Long-term sustainability of coppice stands requires harvesting after leaf fall (Bollmark et al. 1999). Tharakan et al. (2005) reported on the yield of a 3-year Salix coppice stand. Short rotation coppicing contributes to the fixation of carbon and can provide an energy source substitute for fossil fuels. These crops are used to produce heat and electricity directly through combustion or indirectly through conversion to biofuels. The high net energy ratio for Salicaceae biomass electricity by direct fire or gasification ranges from 10 to 13 MJ of electricity/ MJ of fossil fuel consumed across the life cycle of the system (Keoleian and Volk 2005). Therefore, Salicaceae provide a great opportunity to conserve fossil fuel resources, limiting the greenhouse gas emissions within the range of 40–50 g CO2 equivalent/kWhelec. Salicaceae, being obligate phreatophytes, need a permanent water supply for good biomass production. Many of their genotypes have tap roots that can go very deep into the soil; when they reach the water table they develop a capillary fringe just above it. Thus, ecotypes of willow and poplar can be found acclimated to the environmental conditions of many different geographical areas and are regarded as local vegetation with discrete successes in both biomass production for energy and even in many phytoremediation trials for decontaminating soils, as summarized in Table 1. Some Salix genotypes are known to grow well in soils with excess water and they can also tolerate moderate chilling conditions. On the contrary, some Populus genotypes can better tolerate conditions of moderately dry soils with some salinity (Kuzminsky and Sabatti 1999). Regarding salinity, Mirck et al. (2009) showed the potential of poplar and willow vegetation to recycle high-salinity waste waters. The peculiar characteristics of SRC plantations for biomass production, as shown in the previous subsection, can be considered among the ideal characteristics of candidate plants for contaminated soil phytoremediation. Undoubtedly, an important aspect of these characteristics is given by the ability of some clones to form a tangled skein of coarse and fine capillaries between the roots of plants growing close together. This large rhizosphere occupies the soil down to 2–3 m and creates a high capacity for nutrient uptake and eventual interactions with contaminants. Furthermore, such a large rhizosphere can diffuse the contaminants more homogeneously through physical root pathways inside the soil, increasing the probability of organic degradation by exudates and soil enzymes and of heavy metals becoming complexed with exuded ligands and then being taken up by the roots (Pietrini et al. 2005). There are many examples of these phytoremediation activities being observed in poplars (see specific sections in this review). However, some poplar and willow genotypes can be expected, like most plants, to produce and exude stable metal ligands from the roots, such as citric, malic or oxalic acids, or some enzymes degrading organic compounds, such as peroxidase, dehalogenase, chitinase, and proteolytic enzymes. It has been widely shown that specific genotypes produce and exude more of these molecules than other genotypes (Qin et al. 2007), highlighting the high potential of Salicaceae biodiversity for phytoremediation purposes. Short rotation coppicing is not the only way to combine soil remediation with fast-growing plants and high biomass production. Plants from the Salicaceae family can also be utilized without coppicing for hydraulic control/evapotranspiration, groundwater remediation, riparian barriers and landfill reclamation (ITRC 2009). The exploitation of poplar and willow for urban restoration represents a meaningful example (Dickinson et al. 2009). A bottom-up approach in genetic traits studies Studies of genetic properties for phytoremediation start by observing phenotypes in clones and variants, and then trying to identify the genes potentially involved in the observed properties. It has been remarked that tree species are not apt to rapidly produce heavy-metal-tolerant genotypes (Pulford and Watson 2003). However, they seem to have particular tolerance mechanisms that are possibly linked to their specific physiology (Riddell-Black 1993). Concerning heavy metal contamination, several studies have tried to analyse the genetic variability that exists for tolerance and accumulation (for a recent review, see Maestri et al. 2010). Up to now, model plant species have been the preferred target of these studies, especially Thlaspi caerulescens J. and C. Presl. and Arabidopsis halleri (L.) O’Kane and Al Shehbaz. Recent findings point to the existence of multiple major genes for metal tolerance, and to independent genetic determinations of tolerance and accumulation. Genetic mapping, inter- and intra-specific crosses, and genomic studies are the methodologies currently applied for these types of plants. These have led to the identification of candidate genes possibly involved in conferring tolerance or in stimulating hyperaccumulation. One such example is ZTP1 (van der Zaal et al. 1999), involved in Zn transport across membranes in Thlaspi. These types of studies are virtually absent in plants of the Salicaceae family. Populus and Salix are used and propagated as clones, and the genetic Tree Physiology Online at http://www.treephys.oxfordjournals.org 1322 Marmiroli et al. Table 1. Review of literature concerning (A) Salix studies and (B) Populus. Species or genera Main results (A) Salix METALS IN FIELD TRIALS Salix clones Salix spp. Salix discolor, S. viminalis Salix spp. Salix viminalis Variability of Cd and Zn allocation in clones from polluted and unpolluted areas: 1–72% of metal allocated to shoots Heavy metal accumulation and tolerance, allocation to organs Variability in transfer coefficients for heavy metals: Cd, Zn higher than Ni, Cu, Pb Exclusion of Cu and accumulation of Zn in shoot tissues Correlation of plant height with heavy metal content in bark Reference Landberg and Greger (1994, 1996), Greger and Landberg (1999) Riddell-Black (1994), Punshon et al. (1995), Watson et al. (1999) Labrecque et al. (1995) Nissen and Lepp (1997) Sander and Ericsson (1998) Salix spp. Clonal variation in accumulation of heavy metals and allocation to organs, effects on photosynthesis Robinson et al. (2000) Salix viminalis Breeding for metal phytoremediation and comparison of commercial varieties Larsson (2001), Lindegaard et al. (2001) Salix spp. Variability in allocation of heavy metals to bark and wood Pulford et al. (2002) Salix viminalis Leaf response to heavy-metal-contaminated soil Hermle et al. (2007) Salix spp. Accumulation of heavy metals Meers et al. (2007), Unterbrunner et al. (2007) Salix alba, S. caprea, S. purpurea Metal accumulation from contaminated sites Migeon et al. (2009) Salix viminalis Metal remediation for Cu, Cd, Pb, Zn, in combination with arbuscular mycorrhizae Bissonnette et al. (2010) Salix spp. Hydroponic experiments for response to heavy metals, effects on physiological parameters and photosynthesis Šottníková et al. (2003), Lunáčková et al. (2003a, 2003b), Dos Santos Utmazian et al. (2007) Salix viminalis Lack of phytochelatin induction in roots and leaves when exposed to Cd Landberg and Greger (2004) Salix spp. Uptake, accumulation and tolerance for Hg Wang and Greger (2004) Salix spp. Cd accumulation and tolerance Vassilev et al. (2005) Salix spp. Variability in tolerance responses of photosynthesis to Cd contamination Cosio et al. (2006), Dos Santos Utmazian et al. (2007), Kieffer et al. (2009a), Zacchini et al. (2009), Pietrini et al. (2010b) Salix viminalis Selective accumulation of metals in roots, remediation of Co Mleczeka et al. (2009) Salix spp. Photosynthetic responses to a mixture of Cd, Pb and Ni Pajević et al. (2009) Salix clones Response to Cd and physiological parameters, effect on photosynthesis Zacchini et al. (2009), Pietrini et al. (2010a, 2010b) Salix alba, Salix spp. Differences among clones in accumulation of Cd and localization in tissues of roots Cocozza et al. (2011) Salix alba Involvement of sulphur compounds, organic acids and amino compounds in metal trafficking and detoxification in plant cells Zacchini et al. (2011) Salix viminalis Stimulation of microbial activity and PAH (polycyclic aromatic hydrocarbon) degradation Vervaeke et al. (2003) Salix spp. Variability of petroleum hydrocarbon remediation Zalesny et al. (2005) Salix spp. Tolerance and degradation of soil PCP (pentachlorophenol) Mills et al. (2006) METALS IN LABORATORY TRIALS ORGANICS IN FIELD TRIALS ORGANICS IN LABORATORY TRIALS Salix babylonica Removal of ethanol and benzene from aquifers Corseuil and Moreno (2001) Salix babylonica Uptake and removal of dieldrin Skaates et al. (2005) Salix babylonica Uptake and phytovolatilization of methyl tert-butyl ether Yu and Gu (2006) Salix esigua Removal of pharmaceutical organic compounds from municipal treated wastewater Franks (2007) Continued Tree Physiology Volume 31, 2011 Salicaceae and phytoremediation 1323 Table 1. Continued Species or genera Main results Reference Clonal variation in accumulation of heavy metals, allocation to organs, effects on photosynthesis Effect of Pb, Cd, Ni and Zn on physiological parameters Leaf response to heavy-metal-contaminated soil Accumulation of heavy metals Phytorecurrent selection for phytoremediation of landfill leachates Metal accumulation from contaminated sites Robinson et al. (2000), Laureysens et al. (2004, 2005) Baycu et al. (2006) Hermle et al. (2007) Unterbrunner et al. (2007) Zalesny et al. (2007) (B) Populus METALS IN FIELD TRIALS Populus clones Populus nigra Populus tremula Populus tremula Populus spp. P. deltoides × Populus nigra, Populus tremula × Populus alba, P. tremula × Populus tremuloides, P. trichocarpa × P. deltoides Populus × generosa Populus deltoides × Populus nigra Populus alba Migeon et al. (2009) Metal remediation for Cu, Cd, Pb, Zn, in combination with arbuscular mycorrhizae Cd accumulation from contaminated soils Bissonnette et al. (2010) Wu et al. (2010) Phytoremediation of tannery sludge Shukla et al. (2011) In vitro plantlets study on accumulation of metals, capacity for lead accumulation without toxic effects Hydroponic experiments for response to heavy metals, effects on physiological parameters and photosynthesis Kališová-Špirochová et al. (2003) METALS IN LABORATORY TRIALS Populus tremula × tremuloides Populus spp. Populus deltoides × Populus nigra (Populus × euramericana) Response to different Zn concentrations Šottníková et al. (2003), Lunáčková et al. (2003a, 2003b), Dos Santos Utmazian et al. (2007) Di Baccio et al. (2003, 2005) Populus tremula × P. alba In vitro screening of shoot cultures for tolerance to Al, Cu, Pb Bojarczuk (2004) Populus trichocarpa × deltoides Cloning of genes for metallothioneins Kohler et al. (2004) Populus deltoides × maximowiczii, P. × euramericana Differential response to tanneries material containing heavy metals: physiological parameters and metal accumulation Sebastiani et al. (2011), Tognetti et al. (2004) Populus clones Phytoextraction of Cd Pilipović et. al. (2005) Populus × euramericana (P. deltoides × P. nigra) Response to Cu and physiological parameters Borghi et al. (2007, 2008) Populus alba In vitro studies on molecular and biochemical aspects regarding Zn and Cu toxicity Franchin et al. (2007) Populus nigra × maximowitzii × P. nigra Response to Cd stress, effect on photosynthesis Nikolić et al. (2008) Populus spp. Populus tremula × P. alba Proteomics of Cd response Kieffer et al. (2008, 2009a, 2009b), Durand et al. (2010) Populus × euramericana clone Response to Zn and physiological parameters Di Baccio et al. (2009) Populus canescens Accumulation of Zn Langer et al. (2009) Populus spp. Photosynthetic responses to a mixture of Cd, Pb and Ni Pajević et al. (2009) Populus clones Response to Cd and physiological parameters, effect on photosynthesis, allocation to organs Zacchini et al. (2009), Pietrini et al. (2010a, 2010b) Populus alba Mycorrhizal symbiosis effect on growth in heavy-metal- Cicatelli et al. (2010) contaminated soil Populus alba In vitro screening for differential clonal response in microshoots for metal tolerance and accumulation Di Lonardo et al. (2010) Differences among clones in accumulation of Cd and localization in tissues of roots Cocozza et al. (2011) Populus nigra Metal-binding compounds and antioxidants in callus cultures related to Cd tolerance Iori et al. (2011) Populus nigra Involvement of sulphur compounds, organic acids and amino compounds in metal trafficking and detoxification in plant cells Zacchini et al. (2011) Populus × canadensis, nigra Populus Continued Tree Physiology Online at http://www.treephys.oxfordjournals.org 1324 Marmiroli et al. Table 1. Continued Species or genera Main results Reference Uptake, hydrolysis and dealkylation of atrazine Burken and Schnoor (1996, 1997) ORGANICS IN FIELD TRIALS Populus deltoides × nigra Populus trichocarpa × P. deltoides Uptake and transpiration of carbon tetrachloride Wang et al. (2004) Populus spp. Variability of petroleum hydrocarbon remediation Zalesny et al. (2005) Populus spp. Tolerance and degradation of soil PCP Mills et al. (2006) Populus deltoides × (Populus tricho- In situ bioaugmentation with engineered endophytic bacteria decreases trichloroethylene (TCE) evapotranscarpa × Populus deltoides) piration, due to increased degradation Weyens et al. (2009) Populus spp. Bianconi et al. (2011) Removal of recalcitrant HCH isomers in the presence of inoculation with selected Arthrobacter strains ORGANICS IN LABORATORY TRIALS Populus spp. Biotransformation of TCE to trichloroethanol, di- and trichloracetic acid, mineralization to CO2 Newman et al. (1997), Gordon et al. (1998) Populus deltoides × nigra Uptake and degradation of explosives, including TNT Thompson et al. (1998) Populus deltoides × nigra Uptake and transpiration of 1,4-dioxane Aitchison et al. (2000) Populus deltoides × nigra Reduction of perchlorate Van Aken and Schnoor (2002) Populus deltoides × Populus nigra In vitro screening of cell cultures for absorption and degradation Mezzari et al. (2004) of explosives RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) and HMX (octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine) Populus deltoids × nigra Uptake and removal of dieldrin Populus deltoides × nigra Hydroponic cultures for gene induction during explosives Tanaka et al. (2007) decontamination Populus deltoides × nigra Uptake and translocation of polychlorinated biphenyls (PCBs); translocation is inversely related to PCB hydrophobicity Liu and Schnoor (2008), Liu et al. (2009) Populus deltoides × nigra Interaction with mycorrhizal fungi increases explosive decontamination (RDX) Thompson and Polebitski (2010) approaches in these plants have been quite different from those listed above. Crosses between clones differing in phytoremediation capacities have never been described at a molecular level. The genus Salix offers a wide range of genetic diversity; therefore, as there are only a limited number of domesticated willow crops, there is substantial potential for increasing yield and improving metal tolerance and pest resistance through traditional breeding and hybridization. During the last 15 years, extensive efforts to breed Salix viminalis and other shrub willows for biomass production and phytoremediation have been undertaken, mostly in Sweden and the UK. Through these longterm breeding programmes, a considerable wealth of information has been acquired that has elicited, for example, an increase in yield from 12 to 67% in Sweden (Larsson 2001) and from 8 to 143% in the UK (Lindegaard et al. 2001). Molecular approaches Many genes encoding proteins involved in adaptive tolerance and the response to heavy metals have been identified and isolated from several plant species (Krämer 2010, Maestri et al. 2010). Specifically, they are genes encoding for plasma Tree Physiology Volume 31, 2011 Skaates et al. (2005) embrane transporters, tonoplast transporters, metallothioneins m for chelation, enzymes for the synthesis of nicotianamine, PCs and glutathione (GSH), enzymes for the production and secretion of chelating substances in the rhizosphere, such as phytosiderophores, enzymes for sulphate assimilation, and enzymes for lignin biosynthesis. Genes encoding metallothioneins were also characterized in Populus (Kohler et al. 2004). Other candidate genes as descriptors of phytoremediation capabilities encode proteins involved instead in controlling the phases of xenobiotic metabolism: cytochrome P450, N- and O-glucosyltransferases, N- and O-malonyltransferases, sulphotransferases, glutathione-S-transferases and carboxylesterase (Sandermann 1994). Experiments with transgenic plants suggest that an elevated expression of some of these enzymes may also confer resistance to heavy metals and increase their accumulation (Table 2). Proteomics is an innovative approach that can lead to the identification of new candidate genes (see, for example, Kieffer et al. 2008, 2009a, 2009b, Durand et al. 2010). Proteins responsive to stress induced by metal ions have been identified and listed. In general, proteins involved in photosynthesis and energy metabolism are repressed under conditions of metal Salicaceae and phytoremediation 1325 Table 2. Review of literature involving poplars for phytoremediation. Transgenic event Main results Reference Transgenic poplar (Populus tremula × P. alba) transformed with bacterial gsh1 (γ-glutamyl-cysteine synthase) Increased phytochelatin levels, enhanced Cd accumulation; tolerance to Cd was not affected Transgenic poplar as above Increased ability to metabolize the chloroacetanilide herbicides acetochlor and metolachlor Modification of sulphur flux to thiol compounds involved in detoxification of metals and organic contaminants Increased resistance and reduction of mercury and organic mercury Arisi et al. (1997, 2000), Noctor et al. (1998), Koprivova et al. (2002), Rennenberg and Will (2000), Bittsanszky et al. (2005), Ivanova et al. (2009) Gullner et al. (2001) Transgenic poplar (P. tremula × P. alba) transformed with enzymes for sulphur metabolism, sulphite oxidase (SO) and adenosine 5′-phosphosulphate reductase Cottonwood (P. deltoides) transformed with bacterial merA (mercuric ion reductase) or merB (organomercurial lyase) Populus alba transformed with pea PsMT (metallothionein) Transgenic poplar (P. tremula × P. alba) transformed with poplar genes PtPCS1 (phytochelatin synthase) Transgenic poplar (P. tremula × P. alba) transformed with poplar genes PtHMA4 (heavy metal ATPase) Transgenic poplar (Populus tremula × P. alba) transformed with mammalian CYP2E1 (cytochrome P450) Hybrid aspen transformed with fungal MnP (manganese-dependent peroxidase) Hybrid aspen (P. tremula × tremuloides) transformed with bacterial pnrA (nitroreductase) Hybrid poplar (P. tremula × tremuloides) transformed with bacterial cbnA (chlorocatechol dioxygenase) Scheerer et al. (2010) Che et al. (2003, 2006) Increased tolerance to Cu and to oxidative stress Increase in leaf and stem Zn accumulation Balestrazzi et al. (2009) Increased Zn tolerance during rooting Adams et al. (2011) Increased metabolism of TCE Doty et al. (2007), Kang et al. (2010) Removal of bisphenol A Iimura et al. (2007) Increased tolerance and uptake of explosive TNT Results: efficient metabolism of 3-chlorocatechol to 2-chloro-cis, cis-muconate Van Dillewijn et al. (2008) treatment. Among the proteins with increased expression, those involved in antioxidant systems are probably required in metal homeostasis (Nikolić et al. 2008). Antioxidants have a fundamental role in metal detoxification: transition metals such as Cu and Fe enhance the production of reactive oxygen species (ROS), while non-redox reactive metals such as Hg and Cd hamper the function of biomolecules via the displacement of essential metal ions with consequent H2O2 accumulation and oxidative burst. Reactive oxygen species levels are regulated by antioxidant systems: ROS are useful at certain concentrations for defence against pathogens, for marking developmental stages and for lignification, and they also act as intermediate signalling molecules in gene expression regulation. At high concentrations they are extremely toxic because they trigger unspecific oxidation; thus a swathe of molecules such as ascorbate, GSH, tocopherol, and enzymatic scavengers such as peroxidases, catalases and superoxide dismutases act to decrease the ROS excess (Schutzendubel and Polle 2002). The Populus deltoides × P. nigra clone I-214 was tested for its response to different Zn concentrations in order to understand how GSH is involved in Zn detoxification. Interestingly enough, besides showing that antioxidant responses are triggered by Zn in the form of a total decrease in GSH and an increase in GSSG (oxidized glutathione), glutathione reductase (GR) expression Adams et al. (2011) Ohmiya et al. (2009) a nalyses have shown that GR is regulated at transcriptional and post-transcriptional levels and that Zn has a different impact on each of these mechanisms (Di Baccio et al. 2005). As far as organic contaminants are concerned, the issue of genetic variability has rarely been addressed. The decontamination and metabolism of organic contaminants can be easily connected to the presence of enzymes in xenobiotic metabolism (the green liver model), and such enzymes have been described in several species (Sandermann 1994). However, their variability within species has not been described. Recently, hydroponic cultures of Populus were used to measure gene induction during xenobiotic decontamination (Tanaka et al. 2007). Exposure to the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) led to the induction of genes encoding one glutathione-Stransferase, one cytochrome P450, two reductases and one peroxidase, in accordance with knowledge on the enzymatic pathways of detoxification. The approach described effectively led to the identification of candidate genes. The genomics of Populus, however, is well advanced and the draft genome sequence of black cottonwood, Populus trichocarpa, was published in 2006 (Tuskan et al. 2006). The sequence of the nuclear genome contains >45,000 putative protein-coding genes. Data can be accessed and explored at the PopGenIE website (http://www.popgenie.org, Sjödin et al. Tree Physiology Online at http://www.treephys.oxfordjournals.org 1326 Marmiroli et al. 2009). Populus nigra genotypes have been crossed to generate an F1 mapping pedigree and to construct a highly informative genetic map of these species, including genes of adaptive and economic interest (Gaudet et al. 2008). Microsatellite markers are available from the website of the Poplar Molecular Genetics Cooperative (Cervera et al. 2001), and during sequencing >1 million SNPs and indels were identified, with an average of 2.6 polymorphisms per kilobase. Poplar microsatellites from Salix buriatica (Edwards et al. 1996) were successfully used on willow species (S. viminalis and Salix alba × Salix fragilis) together with AFLP to build genetic linkage maps for agronomic traits such as yield and pathogen resistance (Hanley et al. 2002, Barcaccia et al. 2003, Berlin et al. 2010). Growth and nitrogen use efficiency, resistance to pathogens, water use and mineral uptake have been found to be quantitative traits under polygenic control. Phenotypic correlation and quantitative trait loci (QTLs) for growth traits and traits related to water use were analysed in a tetraploid hybrid F2 population originating from a cross between a female diploid S. viminalis and a male hexaploid Salix dasyclados. This research reported that the QTL analysis suggested the existence of several clusters, one of which, located on chromosome II (male map), appeared to control several traits such as leaf area productivity and leaf area ratio (Weih et al. 2006). Advances in genomics for Salicaceae are promising for future improvement in our knowledge of the basic mechanisms involved in phytoremediation. Physiological and biochemical trait studies Studies of various traits of Salicaceae useful for heavy metal phytoremediation, such as heavy metal uptake, accumulation and allocation in different plant parts, and tolerance at root and leaf levels, including the physiological and biochemical mechanisms at the basis of these activities, started in the 1990s as summarized in Table 1. Recent reviews describing the state of the art have been published (Memon and Schröder 2009, Vangronsveld et al. 2009, Rascio and Navari-Izzo 2011). Many studies conducted under both controlled and field conditions (Table 1) showed that both Salix and Populus spp. extracted relatively high quantities of various heavy metals from the soil, and remarkable inter- and intra-species differences in this extraction were evidenced. A comparison of the relative quantity of Cd extracted in situ by Populus clones selected for their survival in a contaminated area (Pietrosanti et al. 2008) can be done with data of Thlaspi caerulescens, a hyperaccumulator species tested in soil with a similar contamination level (McGrath et al. 2000). The amount of Cd extracted by Salicaceae was smaller than the amount extracted by the hyperaccumulator species per dry mass unit, whereas it was higher than the amount extracted by hyperaccumulator species per plant and per hectare due to the greater biomass production of Salicaceae trees. Specifically, Populus extracted 250 g Cd ha−1 and Thlaspi about 125 g Cd ha−1 on an Tree Physiology Volume 31, 2011 annual basis in a soil contaminated with 7–8 kg Cd ha−1. The Cd shoot accumulation was ~11 mg and 40 mg kg−1 dm, the average plant dry matter was ~2.2 kg and 30 g, and the plant density was ~1 and 80 plants m−2 for Populus and Thlaspi, respectively. Using these data, it can be estimated that Populus would take at least 30 years to remove the Cd from a moderately contaminated soil, assuming that the plants did not change their extraction capacity during that time. The objective of shortening this time factor as much as possible is an experimental target that has engaged many investigators. In this regard, interesting results were obtained in high-density plantations of Salicaceae (8000– 10,000 plants ha−1) using a short rotation coppice system that augmented the root density from top soil down to 2–3 m, and thus increased the potential extraction of metals by the roots. A greater interaction seemed to be provided by the proliferation of bacteria (De Paolis et al. 2011) and by the addition of chemicals able to form metal complexes. It is suggested that both these situations increase the bioavailability of heavy metals. Besides Cd, various clones of Salicaceae have been tested in the laboratory and in field studies (Table 1) for the remediation of soils singly or simultaneously contaminated with other heavy metals such as Zn, Ni, Cu, Pb, Co and Cr. Results confirmed that the removal of most metals, at least below the European Union legal limits, from typical, moderately contaminated soil, requires a number of years, even as many as those indicated for Cd. Differently, when Populus spp. were used to remove heavy metals from water (Pietrini et al. 2010a), the mean extraction efficiency was in the order of hundreds of times the extraction efficiency in soil, according to Pietrosanti et al. (2008). Metal availability and plant transpiration (the latter an important driving force of passive extraction) were both enhanced in water and were likely to be the main cause of the observed high efficiency. Another interesting trait under investigation is the allocation of various extracted heavy metals to above-ground organs (Table 1). According to Zacchini et al. (2009), the allocation of extracted heavy metals to these organs (preferentially in the woody biomass) should be considered as one of the ideal traits of candidate trees for efficient metal phytoremediation. This indication is supported by the following observations: most plants accumulate metals in their roots, but the rapid turnover (days) of their fine capillaries, where metals are generally bound (Cocozza et al. 2008, 2011), would release them again into the soil. A similar fate would follow the allocation of heavy metals into leaves. On the contrary, heavy metal allocation to wood, especially when trees are managed as an SRC system, would remove the metal from the soil with the harvested wood biomass every 2 or 3 years. Via the controlled combustion of the biomass, most of the metal content could remain in a small volume of recoverable ash, and it could even be easily isolated and reused for various purposes (Pulford et al. 2002, Rockwood et al. 2004). Little knowledge on mechanisms involved in causing a preferential allocation of metals to wood and bark with respect Salicaceae and phytoremediation 1327 to leaves or roots has been gained. So far we have learned that plant metal accumulation is correlated with wood (xylem) and bark (phloem + periderm) dry mass, stool biomass, number of shoots per stool and mean shoot diameter (Laureysens et al. 2004), and that Populus clones are significantly different regarding these properties. The authors concluded that selecting clones for these biomass and growth features could result in the corresponding selection of metal accumulation capacity in the above-ground organs. Other studies showed that wood and bark are important as large sinks for metals, particularly because they are formed each growing season (Lepp 1996, Dickinson and Lepp 1997). In the study of Landberg and Greger (1994), Salix clones showed a shoot accumulation of Cd about five times higher than the hyperaccumulators T. caerulescens and Alyssum murale due to the high biomass production and transport of Cd to shoots. Another interesting aspect was that the increased application of metals to the trees did not necessarily lead to increased metal concentrations in the tissues; Cu, Ni and Pb plant concentrations were almost independent of soil concentrations, whereas Cd and Zn concentrations were more dependent, probably because the soil solubility of these metals was higher. Few studies have dealt with the physiological and b iochemical activities of Salicaceae in response to short- or long-term exposure to metals such as Cu, Cd, Pb, Ni, As and Cr (Table 1). According to some authors, it is worth paying attention to the interaction between heavy metals and photosynthesis. This interaction can be either direct, when the metal arrives at the leaf and enters the chloroplast, or indirect, when it competes for absorption with metals essential for photosynthesis, such as Mg, Fe and Mn. An inappropriate supply of these metals can cause limitations to the capacity and activity of some enzymes, with possible implications for the efficiency of photosynthetic activity. The analyses of chlorophyll fluorescence and gaseous exchange or other instrumental non-invasive techniques, performed simultaneously on the same leaf surface, are the technical approaches used for studying the stress effects on photosynthetic components in vivo, and they could also be adopted for studying similar metal effects (Pietrini et al. 2003). For example, imaging the emission of leaf chlorophyll fluorescence and measuring X-ray fluorescence on the same surface (Figure 1) allowed an assessment and confirmation of the direct interaction of photosynthetic performances with spatial Cd contents (Pietrini et al. 2010b). Regarding the indirect effects of the presence of toxic metals in the rhizosphere on photosynthesis, there is evidence to show the interference of Cd with the adsorption of other metals, such as Fe, Mg, Zn and Mn, which are essential cofactors of enzymes, pigments and structural components of photosynthetic apparatus. Studies regarding this aspect have been conducted on Arabidopsis thaliana and other higher plants, but to the best of our knowledge they have not been conducted on Salicaceae (Krupa 1999, Solti et al. 2008). Pajević et al. (2009) studied the photosynthetic responses of both willow and poplar clones to a mixture of Cd, Pb and Ni with concentrations between 10−4 and 10−5 M and reported a significant metal- and genotypic- dependent reduction in photosynthesis. These authors showed differences not only in metal absorption and leaf contents but also in metal tolerance abilities between genera and their respective clones. A crucial question arises from studies on photosynthesis and environmental stresses (i.e., metal stress) regarding which of the main components of photosynthesis (photochemical, metabolic or stomatal or mesophyll diffusion of CO2) are altered by metal toxicity. Most studies on Cd, Zn and Cu effects in higher plants reported major alterations in metabolic-related activities but relatively few photochemical activities (Sanità di Toppi and Gabbrielli 1999). This high tolerance of the photochemical process and a noticeable decrease in the photosynthetic potential (i.e., maximum activity of photosynthesis) were found in some studies with Populus clones treated with either 50 µM Cd or up to 1000 µM Cu (Borghi et al. 2007, Pietrini et al. 2010a). A further target for studies was to determine the threshold concentrations of metal toxicity on photosynthesis. In this regard, Di Baccio et al. (2009) reported that in a Populus × euramericana clone, this threshold for externally bioavailable Zn concentrations was between 1 and 5 mM Zn (concentrations far higher than the levels registered in Zn-contaminated soils). Above this value, they reported a reduction in carboxylation activity without significant effects on stomatal functions. Furthermore, studies on various trees, targeting the metal distribution in various organs, showed that the majority of these contaminants accumulated in roots, trapped in cortical cells, and that generally only small percentages moved to stems, branches and leaves. For example, different Cd concentrations in roots and leaves were evidenced between Salix and Populus spp., indicating that the metal translocation ability to above-ground organs and the metal tolerance of various willow clones were remarkably greater than those of various poplar clones (Dos Santos Utmazian et al. 2007). This finding was confirmed by Pietrini et al. (2010b) in other clones of both Salix and Populus spp. In the same work, the lack of PC induction in Salix was indicated as the cause of Cd diffusion and sensitivity in leaves compared with poplars. The lack of PCs was first reported by Landberg and Greger (2004) for different Salix clones. An involvement of PCs in Cd transportation was also reported by Rennenberg and Will (2000), Verbruggen et al. (2009) and Zacchini et al. (2011). Divergent tolerance responses of photosynthesis were found between different clones of the same genus. These differences were attributed to changes in the activation of some stress-related biochemical molecules and mechanisms involved in Cd accumulation and tolerance (Cosio et al. 2006, Dos Santos Utmazian et al. 2007, Zacchini et al. 2009, Kieffer et al. 2009a, Wu et al. 2010, Pietrini et al. 2010b). The most common and visible effect of heavy metal toxicity in plants is the loss of pigments (chlorophylls and carotenoids). Krupa et al. (1996) suggested that this could be used as a Tree Physiology Online at http://www.treephys.oxfordjournals.org 1328 Marmiroli et al. Figure 1. (a) Images of two representative leaves from Cd-treated poplar (A4A) and willow (SS5) clones. The spectra of Cd peaks obtained with EDXRF on different areas of the same leaves are also reported. (b) Chlorophyll fluorescence images of the same leaves (ΦPSII) showing the different photosynthetic activities in the two clones due to a different Cd distribution on the leaf surface. The false colour code depicted at the bottom of each image ranges from 0.000 (black) to 1.000 (pink, colour figure or white, black and white figure). simple and reliable indicator of heavy metal toxicity in higher plants, including trees, such as Salicaceae, green algae and cyanobacteria. Pietrini et al. (2010a) reported differences in the loss of chlorophyll in relation to differences in the sensitivity of various poplar clones to Cd. Exposure of plants to metals, especially Zn, Ni, Al and Cd, induced changes in the content of organic acids, namely citric and malic acid (Saber et al. 1999, Bhatia et al. 2005). Organic acids can bind metals through the formation of complexes. It has been reported that feeding plants with citric acid resulted in an enhanced metal root to shoot transport, probably through xylem fluids (Chen et al. 2003). An involvement of organic acids in Cd tolerance and accumulation in poplar and willow clones was reported (Iori et al. 2011, Zacchini et al. 2011). Zacchini et al. (2011) proposed a role for the participation of amino compounds in the response and differential adaptation of poplar and willow plants to Cd. Organic degradation trait studies According to Lynch (1987), plants release ~30% of their photosynthates into the soil in addition to enzymes, organic acids and other metabolites. A similar or even slightly higher (35%) carbon percentage can be estimated for trees, including some Tree Physiology Volume 31, 2011 Populus spp. (Grayston et al. 1997). The amount of released carbon is one of the more likely reasons that make these plants good hosts of microorganisms in their rhizospheres, including microorganisms useful for metabolic degradation. Because of this feature, they are capable of a higher rhizoquenching rate of organic xenobiotics like BTEX (benzene, toluene, ethylbenzene and xylene compounds) compared with other trees (Jordahl et al. 1997). Indeed, field and greenhouse studies showed that Populus spp. have an important role in the uptake and degradation of particular chlorinated organics, and that they can become established in soils heavily contaminated with petroleum hydrocarbons (Table 1B). It is noteworthy that Populus spp. are among the few tree genera that can associate in a mutualistic symbiosis with endophytic bacteria (Taghavi et al. 2010) and both types of mycorrhizal fungi (ectomycorrhizae and vesicular arbuscular mycorrhizae) (Karliński et al. 2010), which have a fundamental role in increasing the surface area of roots by up to 800-fold. It is not clear whether the fungi can directly degrade contaminants or whether they contribute to bacterial degradation (Gunderson et al. 2007). Due to the quality and quantity of knowledge about rhizodegradation mechanisms and plant–bacteria symbiosis, Populus spp. currently seem to be more suitable than willows for the phytoremediation of some persistent organic pollutants (e.g., chlorinated hydrocarbons, see Table 1). Salicaceae and phytoremediation 1329 A study on the variability of petroleum hydrocarbon remediation was recently carried out (Zalesny et al. 2005) on 20 Populus and two Salix clones. In the experiment, the clones differed significantly in height and diameter, and a broad genetic variation was seen for survival under contaminated conditions. Commercial Populus clones performed better and, according to the authors, this was attributed to their generalist growth performance. The choice of performing genotypes should be made in short-term treatability studies using clonal selection indices from plant breeding. Top-down approach The study of phytoremediation could also involve genetic engineering with candidate genes, where enhanced properties in the recipient plant could be expected (for a review, see Maestri and Marmiroli 2011). The feasibility of genetic engineering in poplar has enabled this approach for both inorganic and organic contaminants (Table 2). Transgenic poplar plants have been produced to improve the phytoextraction of heavy metals by increasing the production of GSH in order to allow an increased synthesis of PCs. The transgene was from Escherichia coli, gsh1, and it encoded gamma-glutamyl-cysteine synthase (Arisi et al. 1997). Results showed improvement in Cd accumulation and additionally increased tolerance to chloroacetanilide herbicides (see Table 2). It is known from other plant species that GSH conjugates to soluble intermediates of the metabolism of these herbicides, and therefore the authors hypothesized that increased GSH levels confer tolerance to herbicides. Che et al. (2006) transformed cottonwood with a bacterial merB gene involved in the protonolysis of a carbon mercury bond to produce a less toxic form of mercury, showing the need to combine more genes to obtain a transgenic tree useful in the phytoremediation of mercury-contaminated waters. Recent experiments (Adams et al. 2011) have used endogenous poplar genes under constitutive control to increase the tolerance and accumulation of Zn. Other experiments have addressed transformation with genes involved in metabolism of organic contaminants (Table 2) conferring new metabolic activities to poplar plants and cells. Combining bottom-up and top-down approaches The exploitation of genetic knowledge combines bottom-up and top-down approaches in an integrated system. Traits linked to interesting properties can be identified in a mapping population and QTLs can be identified. Extreme genotypes on both sides of the distribution can be identified and used for microarray analysis in order to identify the main differences. From this set of analyses, a panel of candidate genes can be selected for mapping in relation to previously identified QTLs. Genes of interest may also be tested in transgenic plants to ascertain their role and function. The natural genetic variation in these same genes can be studied with specific genetic markers and applied in breeding. Novel approaches such as ecotilling can be exploited in searching for genetic variation and SNPs in natural populations. Ecotilling has been applied to P. trichocarpa, focusing on nine specific genes (Gilchrist et al. 2006). Conclusions The use of Salicaceae for heavy metal and organic phytoremediation associated with biomass production in high-density plantations is receiving a great deal of interest especially with respect to large and moderately contaminated sites with low economic interest. For enhancing the efficiency of this technology, an in situ effective selection of plant material and possibly of symbiotic microorganisms able to completely degrade more recalcitrant organic contaminants in the rhizosphere is essential. A large availability of candidate plants for selection can be obtained by studies of natural variation within the Salicaceae germplasm in response to contaminants. Studies to unravel genome regions by QTLs, key genes and alleles usefully involved in physiological and biochemical processes such as high levels of metal extraction and translocation to shoots and organic degradation are key starting blocks to obtain an efficient in situ phytoremediation. Funding N.M. and E.M. received funding from the University of Parma’s Local Funding for Research. M.M. received funding from the Italian Ministry for Education, University and Research (MIUR) under PRIN2008 project No. 2008XS9YBC_002 ‘Genes, genes products and decontamination functions of Salicaceae spp. for metals and metal nanoparticles’. F.P., M.Z. and A.M. received funding from MIUR under PRIN 2008 project No. 2008XS9YBC_003 ‘An investigation on some physiological and biochemical aspects involved in the accumulation, distribution, tolerance and degradation of contaminants in poplar clones’. References Adams, J.P., A. Adeli, C.-Y. Hsu, R.L. Harkess, G.P. Page, C.W. d ePamphilis, E.B. 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