sensors Review Screening Genotoxicity Chemistry with Microfluidic Electrochemiluminescent Arrays Itti Bist 1 , Kiran Bano 1 and James F. Rusling 1,2,3,4, * 1 2 3 4 * Department of Chemistry, University of Connecticut, Storrs, CT 06269, USA; [email protected] (I.B.); [email protected] (K.B.) Department of Surgery and Neag Cancer Center, University of Connecticut Health Center, Farmington, CT 06032, USA Institute of Material Science, University of Connecticut, Storrs, CT 06269, USA School of Chemistry, National University of Ireland at Galway, Galway, Ireland Correspondence: [email protected] Academic Editor: María Jesús Lobo-Castañón Received: 7 April 2017; Accepted: 26 April 2017; Published: 3 May 2017 Abstract: This review describes progress in the development of electrochemiluminescent (ECL) arrays aimed at sensing DNA damage to identify genotoxic chemistry related to reactive metabolites. Genotoxicity refers to chemical or photochemical processes that damage DNA with toxic consequences. Our arrays feature DNA/enzyme films that form reactive metabolites of test chemicals that can subsequently react with DNA, thus enabling prediction of genotoxic chemical reactions. These high-throughput ECL arrays incorporating representative cohorts of human metabolic enzymes provide a platform for determining chemical toxicity profiles of new drug and environmental chemical candidates. The arrays can be designed to identify enzymes and enzyme cascades that produce the reactive metabolites. We also describe ECL arrays that detect oxidative DNA damage caused by metabolite-mediated reactive oxygen species. These approaches provide valuable high-throughput tools to complement modern toxicity bioassays and provide a more complete toxicity prediction for drug and chemical product development. Keywords: electrochemiluminescence; genotoxicity; arrays; cytochrome P450; microfluidics 1. Introduction Toxic chemicals and their metabolites generated by cytochrome P450 (cyt P450) enzymes and bioconjugate enzymes can cause DNA damage. Various types of DNA damage can be caused by toxic compounds, including oxidation of DNA bases, nucleobase adduct formation, depurination of adducts, and strand breaks [1]. DNA oxidations can occur from ionizing radiation and reactive oxygen species (ROS) [2–4] with the major product 8-oxo-2-deoxyguanosine (8-oxodG) on DNA [5] being responsible for mutagenesis. DNA adducts formed by coupling of reactive metabolites and DNA bases are major biomarkers for cancer risk in humans, so a thorough understanding of reactive metabolites of chemicals generated by cyt P450s [6] and bioconjugation enzymes is essential for a complete toxicity pathway assessment of chemicals and drugs. Electrochemical methods for DNA damage and toxicity detection were pioneered by Paleček [7] and Fojta [8]. To date, various electrochemical sensors for DNA damage, DNA interactions with drugs, environmental pollutants, and other potentially genotoxic species have been developed and reviewed by various authors [9–14]. However, our group is the only one to develop metabolite-generating microfluidic electrochemiluminescent (ECL) arrays for predicting metabolic genotoxicity chemistry of xenobiotics. This review focuses on our ECL sensor technology for genotoxicity screening. Sensors 2017, 17, 1008; doi:10.3390/s17051008 www.mdpi.com/journal/sensors Sensors 2017, 17, 1008 2 of 10 Our approach as described herein features ECL arrays comprised of microwells containing dense DNA/enzyme films that produce metabolites in close proximity to DNA. ECL dyes that utilize Sensors 2017, 17, 1008 2 of 10 damaged DNA as a co-reactant are included in the microwells. Extension of reactive metabolite damaged DNA as a co-reactant are analyses included can in the Extension of reactive metabolite studies to complementary LC-MS/MS be microwells. done utilizing DNA/enzyme films on magnetic studies to complementary analyses can be done utilizing DNA/enzyme films on magnetic beads to biocolloid enzymeLC-MS/MS reactors [15–18]. This review describes the sensor arrays, chemistry, beads to biocolloid enzyme reactors [15–18]. This review describes the sensor arrays, chemistry, and and mechanisms of genotoxicity revealed using these ECL arrays. mechanisms of genotoxicity revealed using these ECL arrays. 2. Metabolic Pathway Involved in Genotoxicity 2. Metabolic Pathway Involved in Genotoxicity Cyt P450s are important metabolic enzymes that catalyze 75% of all known metabolic reactions Cyt P450s are important metabolic enzymes that catalyze 75% of all known metabolic reactions involving drugs and other xenobiotics and can often generate reactive metabolites [19,20]. These reactive involving drugs and other xenobiotics and can often generate reactive metabolites [19,20]. These metabolites can cause DNA damage, the and parent are then as genotoxic. reactive metabolites can cause DNA and damage, the chemicals parent chemicals are described then described as Cyt P450-catalyzed metabolic pathways works through a complex catalytic cycle catalytic by involving genotoxic. Cyt P450-catalyzed metabolic pathways works through a complex cycle the by ferric III iron–heme (P-Fe) prosthetic group. A two-electron reduction of the heme iron breaks oxygen-Fe involving the ferric iron–heme (P-Fe) prosthetic group. A two-electron reduction of thethe heme iron III bond bondbreaks usingthe electrons shuttled byusing cyt P450 reductase (CPR) from NADPH to(CPR) cyt P450s. oxygen-Fe electrons shuttled by cyt P450 reductase from Reduction NADPH to of cyt III III III and protonation III-hydroperoxo complex cyt P450s. Reduction of cyt P450-Fe yields the cyt P450-Fe P450-Fe and protonation yields the cyt P450-Fe -hydroperoxo complex 6 (Scheme 1). This complex IV=O, 7) that IV =O, (Scheme an 1). active This complex produces an active ferryloxy (cytoxygen P450-Fe then 6produces ferryloxythen species (cyt P450-Fe 7) thatspecies transfers to bound substrate transfers oxygen to bound substrate (RH) to oxidize it, often by an oxygen transfer reaction. The (RH) to oxidize it, often by an oxygen transfer reaction. The oxidized group can then serve as a oxidized group can then serve as a site for attaching a solubilizing conjugate. Our genotoxicity assays site for attaching a solubilizing conjugate. Our genotoxicity assays can incorporate any human cyt can incorporate any human cyt P450s and/or metabolic bioconjugation enzymes to mimic these P450s and/or metabolic bioconjugation enzymes to mimic these events in the human body [15]. events in the human body [15]. Many substrates yield DNA-reactive metabolites, including styrene, Many substrateshydrocarbons, yield DNA-reactive metabolites, including styrene, polyaromatic hydrocarbons, polyaromatic nitrosamines, aromatic amines, tamoxifen, and other chemotherapeutic nitrosamines, aromatic amines, tamoxifen, and other chemotherapeutic agents [21–24]. agents [21–24]. Scheme 1. The proposed catalytic pathway for cyt P450-catalyzed metabolic reactions [17,25]. Scheme 1. The proposed catalytic pathway for cyt P450-catalyzed metabolic reactions [17,25]. 3. Development of ECL-Based Genotoxicity Sensors 3. Development of ECL-Based Genotoxicity Sensors Our early toxicity sensors combined metabolic enzymes, DNA, and polyions in layer-by-layer (LBL) thin films on graphite electrodes through electrostatic alternately charged layers (LBL) Our early toxicity sensors combined metabolic enzymes,adsorption DNA, andof polyions in layer-by-layer of a redox ECL polymer, DNA, enzymes, and synthetic polyions [26]. Metabolites are produced thin films on graphite electrodes through electrostatic adsorption of alternately charged layersin ofan a redox enzyme reaction step, and DNA damage is subsequently monitored using ECL and LC-MS ECL polymer, DNA, enzymes, and synthetic polyions [26]. Metabolites are produced in an enzyme bioreactors [27,28]. The ECL dye polycation (bis-2,2′-bipyridyl) ruthenium polyvinylpyridine reaction step, and DNA damage is subsequently monitored using ECL and LC-MS bioreactors [27,28]. ([Ru(bpy)2(PVP)10]2+ or RuPVP) is oxidized by the electrode at ~1.2 V vs. Ag/AgCl to yield RuIII-PVP, 2+ The ECL dye polycation (bis-2,20 -bipyridyl) ruthenium polyvinylpyridine ([Ru(bpy)2 (PVP)10 ] or which catalytically oxidizes guanines to guanine radicals (G•). G• in intact DNA serves as an ECL coIII -PVP, which catalytically RuPVP) is oxidized by the electrode at ~1.2 V vs. Ag/AgCl to yield Ru reactant to eventually produce excited Ru2+*-PVP, which emits light at 610 nm (Scheme 2). Initially, oxidizes guanines to guanine radicals (G• ). G• in intact DNA serves as an ECL co-reactant to eventually Sensors 2017, 17, 1008 3 of 10 Sensors 2017, 17, 1008 3 of 10 produce excited Ru2+ *-PVP, which emits light at 610 nm (Scheme 2). Initially, single electrode ECL sensors coated RuPVP/enzyme/DNA were developed as shown in Scheme 3A. These in Sensors 2017,with 17, 1008 3sensors of 10 single electrode ECL sensors coated with RuPVP/enzyme/DNA were developed as shown in Scheme some cases measured andcases voltammetry simultaneously [29,30]. 3A. These sensors ECL in some measured ECL and voltammetry simultaneously [29,30]. single electrode ECL sensors coated with RuPVP/enzyme/DNA were developed as shown in Scheme 3A. These sensors in some cases measured ECL and voltammetry simultaneously [29,30]. Scheme 2. (A) Structure of ruthenium polyvinylpyridine (RuPVP); (B) proposed reaction mechanism Scheme 2. (A) Structure of ruthenium polyvinylpyridine (RuPVP); (B) proposed reaction mechanism for electrochemiluminescent (ECL) generation using RuPVP and guanines in DNA. Scheme 2. (A) Structure of(ECL) ruthenium polyvinylpyridine (RuPVP); (B) proposed for electrochemiluminescent generation using RuPVP and guanines in reaction DNA. mechanism for electrochemiluminescent (ECL) generation using RuPVP and guanines in DNA. Scheme 3. Evolution of ECL genotoxicity sensors, starting from a single sensor to a 64-microwell array. (A) A single-electrode sensor coated with RuPVP/enzyme/DNA films as shown in (D). The Scheme 3. Evolution of ECL genotoxicity sensors, starting from a single sensor to a 64-microwell sensor was placedofabove optical fiber sensors, connectedstarting to a photomultiplier tube (PMT)to fora ECL detection. array. Scheme 3. Evolution ECLan genotoxicity from a single sensor 64-microwell array. (A) A single-electrode sensor coated with RuPVP/enzyme/DNA films as shown in (D). The (B) Array showingsensor a pyrolytic graphite (PG) chip working electrodefilms with the RuPVP/enzyme/DNA (A) A sensor single-electrode coated with RuPVP/enzyme/DNA as shown in (D). The sensor was placed above an optical fiber connected to a photomultiplier tube (PMT) for ECL detection. film spots shown with Ag/AgCl reference and Pt-ring wire counter electrode. After the enzyme was placed above an optical fiber connected to a photomultiplier tube (PMT) for ECL detection. (B) Array showing a pyrolytic graphite (PG) chip working electrode with the RuPVP/enzyme/DNA reaction driven by NADPH, for ECL readout, the device is placed in a dark box and 1.2 V are applied (B) Array a pyrolytic graphite (PG) chip electrode the RuPVP/enzyme/DNA film showing spots shown with Ag/AgCl reference and working Pt-ring wire counter with electrode. After the enzyme while a charge-coupled device (CCD) camera measures ECL. (C) Recent ECL microwell PG chip in a reaction drivenwith by NADPH, for ECL readout, the Pt-ring device is wire placedcounter in a darkelectrode. box and 1.2 After V are applied film spots shown Ag/AgCl reference and the enzyme microfluidic reaction chamber with symmetrically placed reference and counter electrodes on the while a charge-coupled device (CCD) camerathe measures ECL. (C) Recent ECL microwell PG chip inapplied a reaction driven by NADPH, for ECL readout, device is placed in a dark box and 1.2 V underside of the top plate. Reactants flow into the chamber, and ECL is then captured by using aare CCD microfluidic reaction chamber with symmetrically placed reference and counter electrodes on the while camera a charge-coupled in a dark box.device (CCD) camera measures ECL. (C) Recent ECL microwell PG chip in underside of the top plate. Reactants flow into the chamber, and ECL is then captured by using a CCD a microfluidic reaction chamber with symmetrically placed reference and counter electrodes on the camera in a dark box. We of also ECL from oxidized DNA in films of cationic polymer underside thedemonstrated top plate. Reactants flow into the chamber, andultrathin ECL is then captured by using a CCD [Os(bpy) 2(PVP)10]2+ [PVP = poly(vinyl pyridine)] or OsPVP utilizing 8-oxodG as the co-reactant [31]. camera in a dark box. We also demonstrated ECL from oxidized DNA in ultrathin films of cationic polymer OsPVP combined with RuPVP were assembled into films with DNA or oligonucleotides to detect [Os(bpy)2(PVP)10]2+ [PVP = poly(vinyl pyridine)] or OsPVP utilizing 8-oxodG as the co-reactant [31].II both DNA oxidation and nucleobase adducts from chemical damage. Electrochemically oxidized Os OsPVP with RuPVP assembled intoDNA films with DNA or oligonucleotides to detect We alsocombined demonstrated ECLwere from oxidized in ultrathin films of cationic polymer sites were generated from films containing 8-oxodG on DNA formed by chemical oxidation using aII 2+ [PVP both DNA oxidation and nucleobase adducts from chemical damage. Electrochemically oxidized Os [Os(bpy) (PVP) ] = poly(vinyl pyridine)] or OsPVP utilizing 8-oxodG as the co-reactant II 2 10 Fenton reagent that produced ECL specific for oxidized DNA, and Ru sites gave ECL from [31]. sites were generated from films containing 8-oxodG DNA formed by chemical oxidation using a OsPVP combined with were assembled intoonfilms DNA chemically damagedRuPVP DNA, and possibly from cleaved DNA with strands [28]. or oligonucleotides to detect Fenton reagent that produced ECL specific for oxidized DNA, and RuII sites gave ECL from both DNAMore oxidation andwenucleobase adducts from chemical damage. Electrochemically oxidized recently, have incorporated microsomal CPR/cyt P450 films on electrodes to mimic the OsII chemically damaged DNA, and possibly from cleaved DNA strands [28]. situation in vivo. from Cyclicfilms voltammetry (CV) 8-oxodG of this system closelyformed mimics the of the natural cyt sites were generated containing on DNA by details chemical oxidation using a More recently, we have incorporated microsomal CPR/cyt P450 films on electrodes to mimic the II P450 catalytic pathway. As in Scheme 1, electrons flow from the electrode to CPR and then to the cyt Fentonsituation reagentinthat produced ECL specific forofoxidized DNA, and Ru sites gave of ECL chemically vivo. Cyclic voltammetry (CV) this system closely mimics the details the from natural cyt P450 as in the in vivo pathway to facilitate efficient catalytic turnover of the cyt P450s [32]. CPR is damaged and possibly cleaved DNA strands [28]. P450DNA, catalytic pathway. Asfrom in Scheme 1, electrons flow from the electrode to CPR and then to the cyt reduced by the electrode but cyt P450s are not (Scheme 4, Equation (1)). CPRred exists in redox P450 recently, as in the in pathway to facilitate efficient catalytic turnover of theon cytelectrodes P450s [32]. to CPR is the More wevivo have incorporated microsomal CPR/cyt P450 films mimic equilibrium with cyt P450FeIII to yield CPRox as a product (Scheme 4, Equation (2)), and reduced by the electrode but cyt P450s are not (Scheme 4, Equation (1)). CPR red exists in redox situation in vivo. Cyclic voltammetry (CV) of this system closely mimics the details of the natural III to yield CPRox as a product (Scheme 4, Equation (2)), and equilibrium cyt P450Fe cyt P450 catalytic with pathway. As in Scheme 1, electrons flow from the electrode to CPR and then to the cyt P450 as in the in vivo pathway to facilitate efficient catalytic turnover of the cyt P450s [32]. CPR is reduced by the electrode but cyt P450s are not (Scheme 4, Equation (1)). CPRred exists in redox Sensors 2017, 17, 1008 4 of 10 equilibrium with cyt P450FeIII to yield CPRox as a product (Scheme 4, Equation (2)), and electrochemical oxidation of CPRred (Scheme 4, Equation (3)) competes with this equilibrium. We later found that Sensors 2017, 17, 1008 4 ofP450s 10 a similar catalytic mechanism can be activated in microsomes containing multiple cyt and CPRs [26,33,34]. Thus, the microsomal CPR-containing film is a model for the natural cyt P450 catalysis electrochemical oxidation of CPRred (Scheme 4, Equation (3)) competes with this equilibrium. We later pathway [30]that anda can be used in toxicity sensors electrochemically active cyt P450s. found similar catalytic mechanism can beto activated in microsomes containing multiple cyt Catalytic oxidation of 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone the P450s and CPRs [26,33,34]. Thus, the microsomal CPR-containing film is a model(NNK) for the with natural cytCPR/cyt P450 further catalysis confirmed pathway [30]the andelectrode can be used in toxicity sensors to electrochemically active cyt P450s. P450 films CPR cyt P450 pathway for activation of cyt P450s [32,33]. Catalytic of 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone with thelarger CPR/cytthan that The formation rateoxidation of the product of this reaction in bulk electrolysis (NNK) was slightly P450 films further confirmed the electrode CPR cyt P450 pathway for activation of cyt P450s [32,33]. achieved in the same system using NADPH as electron donor. CV simulations (Scheme 4, Equation (1)) The formation rate of the product of this reaction in bulk electrolysis was slightly larger than that suggestachieved an equilibrium complex between CPR and cyt P450 that facilitates electron transfer [35]. in the same system using NADPH as electron donor. CV simulations (Scheme 4, Equation The theoretical (kb ≥ 5kcomplex = kf /kbCPR ≤ and 0.2, cyt where kf and kb are forward and[35]. backward f and Kbetween (1)) suggestdata an equilibrium P450 that facilitates electron transfer second-order chemical iswhere the equilibrium constant) in favor of CPRred , which The theoretical datarate (kb ≥constants 5kf and K = kand f/kb ≤ K 0.2, kf and kb are forward andlies backward second-order rate constantselectrochemically and K is the equilibrium constant) lies in favor CPRred , which is why CPR is whychemical CPRox is reduced in cyt P450/CPR filmsofthat are preferential tooxcyt P450. ◦ ◦ is reduced electrochemically in cyt P450/CPR films that are preferential to cyt P450. The difference in The difference in formal potential (∆E ) between CPR and cyt P450 is ∆E = [RT/nF] ln(K), where R is formal potential (ΔE°) between CPR and cyt P450 is ΔE° = [RT/nF] ln(K), where R is the gas constant, T the gas constant, T is the absolute temperature, and F is Faraday’s constant. Thus, K < 0.2 predicts is the absolute temperature, and F is Faraday’s constant. Thus, K < 0.2 predicts that cyt P450 formal that cytpotential P450 formal potential negative of CPRox oxinisthe films, that CPR ox is more is ~40 mV negativeisof~40 CPRmV ox in the films, so that CPR more easilyso reduced. O2 present in easily II and the equilibrium shifts to the right reduced. O2 present in catalytic oxidations reacts P450-Feshifts catalytic oxidations reacts with P450-FeII and thewith equilibrium to the right to drive substrate [32].oxidation [32]. to driveoxidation substrate Scheme 4. ErCEo simulation model for cyclic voltammetry (CV) of cyt P450s + cyt P450 reductase Scheme (CPR). 4. Er CEo simulation model for cyclic voltammetry (CV) of cyt P450s + cyt P450 reductase (CPR). 4. Microfluidic Arrays Genotoxicity Screening Screening 4. Microfluidic ECL ECL Arrays forfor Genotoxicity ECL-based genotoxicity sensor arrays were first developedin inour our laboratory laboratory in ECL-based genotoxicity sensor arrays were first developed in 2007. 2007.These These arrays arrays were fabricated on a single conductive chip instead of multielectrode devices. In these ECL were fabricated on a2 single 2conductive chip instead of multielectrode devices. In these ECL arrays, arrays, a 1-inch (6.45 cm ) pyrolytic graphite (PG) block was electrically connected to a copper block 2 (6.45 a 1-inch cm2 ) pyrolytic graphite (PG) block was electrically connected to a copper block via via silver epoxy and insulated using ethyl acrylate so only the upper conductive PG face was exposed. silver epoxy and insulated using acrylate so onlylocations. the upper conductive PG face was exposed. RuPVP/enzyme/DNA films wereethyl spotted on demarcated Metabolite generation was driven RuPVP/enzyme/DNA films were spottedofon demarcated Metabolite generation was driven by manual deposition and incubation reactants on thelocations. arrays (Scheme 3B), using an NADPH regeneration systemand to drive cyt P450 catalysis. by manual deposition incubation of reactants on the arrays (Scheme 3B), using an NADPH These ECL to arrays to our current high-throughput arrays integrated into a regeneration system driveeventually cyt P450 led catalysis. microfluidic reactor. A 64-microwell pattern was computer laser-jet printed and transferred onto a These ECL arrays eventually led to our current high-throughput arrays integrated into a cleaned and polished PG chip (2.5 × 2.5 × 0.3 cm) by heat pressing the mask onto the PG chip at 290 °F microfluidic A 64-microwell pattern was the computer laser-jet printed and transferred onto (143 °C)reactor. for 90 s. The hydrophobic toner separating spots prevents cross-contamination of DNA, a cleaned and polished PG solutions chip (2.5 deposited × 2.5 × 0.3 heat mask onto the PG chip at enzyme and polymer in cm) each by well forpressing LBL filmthe formation. Individual spots were constructed in separating each microwell sequential depositions of 1 μL 290 ◦ F RuPVP/enzyme/DNA (143 ◦ C) for 90 s. The hydrophobic toner thebyspots prevents cross-contamination drops of the appropriate solution. Then, the PG chip was fitted into a microfluidic reaction of DNA, enzyme and polymer solutions deposited in each well for LBL film formation. cell Individual consisting of top and bottom poly(methylmethacrylate) (PMMA) plates with an optical glass window RuPVP/enzyme/DNA spots were constructed in each microwell by sequential depositions of 1 µL to facilitate ECL light acquisition. Pt counter and Ag/AgCl reference electrode wires were fixed on drops of the appropriate solution. Then, the PG chip was fitted into a microfluidic reaction cell the bottom side of the top PMMA plate. A silicone rubber gasket sandwiched between the PMMA consisting ofwas topused andtobottom poly(methylmethacrylate) (PMMA) plates with an the optical glass plates form a sealed channel, and a copper plate was placed underneath PG chip for window to facilitate ECL light acquisition. Pt counter Ag/AgCltoreference electrode were electrical connection. The microfluidic device and was connected a syringe pump for a wires constant flowfixed on of reactants or the buffers a fixed concentration and flow rate to better control reactionbetween conditionsthe in PMMA the bottom side of topatPMMA plate. A silicone rubber gasket sandwiched the semi-automated system (Scheme 3C). Metabolites were generated in situ by flowing test plates was used to form a sealed channel, and a copper plate was placed underneath the PG chip for compounds through the chip, and ECL was then generated by applying a potential of 1.25 V vs. electrical connection. The microfluidic device was connected to a syringe pump for a constant flow of Ag/AgCl for 180 s and captured by a CCD camera in a dark box. reactants or buffers at a fixed concentration and flow rate to better control reaction conditions in the semi-automated system (Scheme 3C). Metabolites were generated in situ by flowing test compounds through the chip, and ECL was then generated by applying a potential of 1.25 V vs. Ag/AgCl for 180 s and captured by a CCD camera in a dark box. Sensors 2017, 17, 1008 5 of 10 Sensors 2017, 17, 1008 5 of 10 Our first task for this microfluidic reactor focused on reactive metabolites of benzo[a]pyrene (B[a]P). Cyt includedreactor rat liver microsomes (RLM) and human liver microsomes OurP450 firstenzyme task for sources this microfluidic focused on reactive metabolites of benzo[a]pyrene (HLM), supersomes (genetically engineered contain only one cytand P450 + CPR) cyt 1B1, 1A1, (B[a]P). Cyt P450 enzyme sources included rattoliver microsomes (RLM) human liver of microsomes (HLM), (genetically engineered to contain only one cyt P450 + CPR) of cyt 1B1, 1A1, and and 1A2 andsupersomes human liver S9 fraction. B[a]P was initially oxidized by cyt P450s to B[a]P-7,8-epoxide 1A2 5, and human (1)), liverwhich S9 fraction. B[a]Phydrolyzed was initially by cyt P450s toinB[a]P-7,8-epoxide (Scheme Equation was then tooxidized B[a]P-7,8-dihydrodiol presence of epoxide (Scheme 5, Equation (1)), which was then hydrolyzed to B[a]P-7,8-dihydrodiol in presence epoxide hydrolase (EH, Equation (2)). Further oxidation of dihydrodiol by cyt P450 resulted inofthe formation hydrolase (EH, Equation (2)). Further oxidation of dihydrodiol by cyt P450 resulted in the formation of reactive metabolite B[a]P-7,8-dihydrodiol-9,10-epoxide (BPDE, Equation (3)), which reacts with of reactive metabolite B[a]P-7,8-dihydrodiol-9,10-epoxide (BPDE, Equation (3)), which reacts with guanine and adenine bases in DNA to form adducts. guanine and adenine bases in DNA to form adducts. cyt P450 / O2 Sensors 2017, 17, 1008 (1) O B[a]P 5 of 10 Our first task for this microfluidic reactor focused on reactive metabolites of benzo[a]pyrene EH (2) (B[a]P). Cyt P450 enzyme sources included rat liver microsomes (RLM) and human liver microsomes HO (HLM), supersomes (genetically engineered to contain only one cyt P450 + CPR) of cyt 1B1, 1A1, and O OH 1A2 and human liver S9 fraction. B[a]P was initiallyO oxidized by cyt P450s to B[a]P-7,8-epoxide cyt P450 / O2 (3) (Scheme 5, Equation (1)), which was then hydrolyzed to B[a]P-7,8-dihydrodiol in presence of epoxide HO hydrolase (EH, Equation (2)). Further oxidation of dihydrodiol by cyt P450 resulted in the formation HO OH OH BPDE of reactive metabolite B[a]P-7,8-dihydrodiol-9,10-epoxide (BPDE, Equation (3)), which reacts with guanine and adenine in DNA to formofadducts. Scheme 5. bases Metabolic activation B[a]P by cyt P450 and epoxide hydrolase (EH). Scheme 5. Metabolic activation of B[a]P by cyt P450 and epoxide hydrolase (EH). cyt P450 / O2 ECL is normalized for the amount of enzyme in each film (estimated(1)by quartz crystal microbalance) O to find the relative rate of DNA damage by B[a]P metabolites. The relative rate of DNA damage was B[a]P higher when EH was included with cyt P450 in microwells when using HLM, RLM, or supersomes, suggesting a complete bioactivation of B[a]P toEHproduce DNA-BPDE adducts. Cyt P450 1B1 was found (2) to have the highest rate of DNA damage followed by HO cyt P450s 1A1 and 1A2 (Figure 1). The formation O of DNA adducts in the presence of B[a]P was confirmedOHby liquid chromatography–mass spectrometry O (LC-MS/MS) by determining dG-BPDE andcyt dA-BPDE films of DNA/enzyme on P450 / O2 adducts using similar (3) magnetic bead reactors. The HO ECL arrays can also measure enzyme inhibition, in this case by measuring HO OH a decrease in the %ECL corresponding to a decrease inOHDNA damage, in the presence of furafylline BPDE Figure 1. (A) Recolorized and reconstructed ECL array results for enzyme reactions with[36]. oxygenated and rhapontigenin, which are known inhibitors of cyt 1A2 andand 1A1, respectively Scheme 5. Metabolic activation of B[a]P by cyt P450 epoxide hydrolase (EH). 25 μM B[a]P + 1% DMSO in pH = 7.4 phosphate buffer with electronic activation of cyt P450s. Microwells containing RuPVP/enzyme/DNA film assemblies exposed to B[a]P for various reaction times. Enzyme sources are cyt P450 supersomes, human, and rat liver microsomes (HLM and RLM), epoxide hydrolase (EH), and human S9 fractions (HS9). (B) Influence of EH on the sensor array, relative DNA damage rate for 25 μM B[a]P at pH 7.4: (a) supersomes; (b) microsomes. Reproduced from [36] with permission, copyright Royal Society of Chemistry, 2013. ECL is normalized for the amount of enzyme in each film (estimated by quartz crystal microbalance) to find the relative rate of DNA damage by B[a]P metabolites. The relative rate of DNA damage was higher when EH was included with cyt P450 in microwells when using HLM, RLM, or supersomes, suggesting a complete bioactivation of B[a]P to produce DNA-BPDE adducts. Cyt P450 1B1 was found to have the highest rate of DNA damage followed by cyt P450s 1A1 and 1A2 (Figure 1). The formation of DNA adducts in the presence of B[a]P was confirmed by liquid chromatography– 1. (A) Recolorized and reconstructed ECL array results fordA-BPDE enzyme reactions with oxygenated films massFigure spectrometry (LC-MS/MS) by determining and using Figure 1. (A) Recolorized and reconstructed ECLdG-BPDE array results for enzymeadducts reactions withsimilar oxygenated 25 μM B[a]P on + 1% DMSO in pH reactors. = 7.4 phosphate buffer with electronic activation of cyt P450s. of DNA/enzyme magnetic bead The ECL arrays can also measure enzyme inhibition, in 25 µM B[a]P + 1% DMSO in pH = 7.4 phosphate buffer with electronic activation of cyt P450s. Microwells containing RuPVP/enzyme/DNA film assemblies exposed to B[a]P for various reaction this case by measuring a decrease in the % ECL corresponding to a decrease in DNA damage, in the Microwells containing RuPVP/enzyme/DNA film assemblies to B[a]P(HLM for various reaction times. Enzyme sources are cyt P450 supersomes, human, and rat exposed liver microsomes and RLM), presence of furafylline and rhapontigenin, which are known inhibitors of cyt 1A2 and 1A1, times. Enzyme sources(EH), are cyt supersomes, andInfluence rat liver of microsomes (HLM array, and RLM), epoxide hydrolase andP450 human S9 fractionshuman, (HS9). (B) EH on the sensor respectively [36]. epoxide hydrolase (EH), and S9 fractions (HS9). (B)supersomes; Influence of(b) EH on the sensor array, relative relative DNA damage ratehuman for 25 μM B[a]P at pH 7.4: (a) microsomes. Reproduced [36] with Royal of Chemistry, DNAfrom damage ratepermission, for 25 µM copyright B[a]P at pH 7.4:Society (a) supersomes; (b)2013. microsomes. Reproduced from [36] with permission, copyright Royal Society of Chemistry, 2013. ECL is normalized for the amount of enzyme in each film (estimated by quartz crystal microbalance) to find the relative rate of DNA damage by B[a]P metabolites. The relative rate of DNA damage was higher when EH was included with cyt P450 in microwells when using HLM, RLM, or supersomes, suggesting a complete bioactivation of B[a]P to produce DNA-BPDE adducts. Cyt P450 1B1 was found to have the highest rate of DNA damage followed by cyt P450s 1A1 and 1A2 (Figure 1). The formation of DNA adducts in the presence of B[a]P was confirmed by liquid chromatography– Sensors 2017, 17, 1008 5. ECL Arrays Organ-Specific Metabolic Toxicity Sensors for 2017, Assessing 17, 1008 6 of 10 6 of 10 Traditional toxicity focuses on the liver, however, 5. ECL Arrays forassessment Assessing Organ-Specific Metabolic Toxicity extra-hepatic tissues are also capable of metabolizing xenobiotics into reactive metabolites. The 64-microwell ECL array above Traditional toxicity assessment focuses on the liver, however, extra-hepatic tissues are alsodescribed capable was further developedxenobiotics to evaluate genotoxic withdescribed different organ of metabolizing intopossible reactive metabolites. Thechemistry 64-microwelleffect ECL array above was enzymes. furtherhuman developed to evaluate possible genotoxic chemistry with different Enzymes from liver, lung, intestine, and kidney wereeffect compared in theorgan arrayenzymes. (Scheme 6). Enzymes from human liver, lung, intestine, and kidney were compared in the array (Scheme 6). Sensors 2017, 17, 1008 6 of 10 5. ECL Arrays for Assessing Organ-Specific Metabolic Toxicity Traditional toxicity assessment focuses on the liver, however, extra-hepatic tissues are also capable of metabolizing xenobiotics into reactive metabolites. The 64-microwell ECL array described above was further developed to evaluate possible genotoxic chemistry effect with different organ enzymes. Enzymes from human liver, lung, intestine, and kidney were compared in the array (Scheme 6). Scheme 6. Experimental design of 64-microwell ECL chip with films of RuPVP/enzymes/DNA for Scheme 6.metabolic Experimental design 64-microwell ECL chip films of RuPVP/enzymes/DNA genotoxicity assays of of test compounds. Symbols: H = with human; L = liver; C = cytosol; Lu = lung;genotoxicity I = intestine; K =assays kidney; of numbers and letters suchSymbols: as 3A4 indicate for metabolic test compounds. H =supersomes human; Lcontaining = liver;the C = cytosol; single cytKP450 manifold. Reproduced from [37] with permission, copyright supersomes Royal Society ofcontaining Lu = lung;denoted I = intestine; = kidney; numbers and letters such as 3A4 indicate Chemistry, 2015. the denoted single cyt P450 manifold. Reproduced from [37] with permission, copyright Royal Society of Chemistry, 2015. 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK), a known carcinogen, was used as a test compound to study the organ-specific metabolic-DNA reactions for enzymes from the different organs Scheme 6. Experimental design of 64-microwell ECL chip with films of RuPVP/enzymes/DNA for (Figure 2). A decrease in relative DNA damage rates in the cytosolic enzymes and their metabolic genotoxicity assays of test compounds. Symbols: H =presence human; L = of liver; C = cytosol; Lu = lung; I = intestine;which K = kidney; numbers and letters 3A4 indicate supersomes the via various co-factors were observed, is consistent withsuch theasdetoxification effectcontaining of cytosols single cyt P450 manifold. Reproduced from [37] with permission, copyright Royal Society of bioconjugationdenoted pathways [37]. Chemistry, 2015. Figure 2. ECL results from genotoxicity study of oxygenated 150 μM NNK in pH 7.4 phosphate buffer and necessary cofactors exposed to microwells containing RuPVP/enzyme/DNA with electrochemical activation of cyt P450s at −0.65 V vs. Ag/AgCl (0.14 M KCl) for different reaction times. (a) Reconstructed, recolorized ECL array images. Control spots contain microsomes exposed to the same reaction conditions as above without exposure to NNK. Graphs show influence of enzyme reaction time on % ECL increase for reaction with 150 μM NNK at pH = 7.4, (b) with human organ tissue enzymes, and (c) with individual cyt P450 supersomes. Reproduced from [37] with permission, copyright Royal Society of Chemistry, 2015. 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK), a known carcinogen, was used as a test compound to study the organ-specific metabolic-DNA reactions for enzymes from the different Figure 2. ECL results from genotoxicity study of oxygenated 150 μM NNK in pH 7.4 phosphate buffer (Figure 2). Afrom decrease in relative DNA damage rates in the presence cytosolic enzymes and Figureorgans 2. ECL results genotoxicity study of oxygenated 150 µM of NNK in pH 7.4 phosphate and necessary cofactors exposed to microwells containing RuPVP/enzyme/DNA with electrochemical buffer andactivation necessary exposed microwells RuPVP/enzyme/DNA with of cytcofactors P450s at −0.65 V vs. to Ag/AgCl (0.14 M containing KCl) for different reaction times. (a) Reconstructed, recolorized arrayat images. Control contain microsomes exposed the same reaction electrochemical activation of cytECL P450s −0.65 V vs.spots Ag/AgCl (0.14 M KCl) fortodifferent reaction conditionsrecolorized as above without to NNK. Control Graphs show influence of enzyme reactionexposed to times. (a) Reconstructed, ECLexposure array images. spots contain microsomes time on % ECL increase for reaction with 150 μM NNK at pH = 7.4, (b) with human organ tissue the same reaction conditions as above without exposure to NNK. Graphs show influence of enzyme enzymes, and (c) with individual cyt P450 supersomes. Reproduced from [37] with permission, reaction time on %ECL increase for reaction copyright Royal Society of Chemistry, 2015. with 150 µM NNK at pH = 7.4, (b) with human organ tissue enzymes, and (c) with individual cyt P450 supersomes. Reproduced from [37] with permission, (NNK), a known carcinogen, was used as a test copyright 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone Royal Society of Chemistry, 2015. compound to study the organ-specific metabolic-DNA reactions for enzymes from the different organs (Figure 2). A decrease in relative DNA damage rates in the presence of cytosolic enzymes and Sensors 2017, 17, 1008 7 of 10 Sensors 2017, 17, 1008 7 of 10 their co-factors were observed, which is consistent with the detoxification effect of cytosols via various bioconjugation pathways [37]. biocolloid reactors reactors provided a more The two-tier approach based on ECL array array and and LC-MS/MS LC-MS/MS biocolloid detailed profile of possible genotoxicity pathways associated with specific possible genotoxicity pathways associated with specific organs. organs. Correlations between DNA damage rates obtained from the cell-free ECL arrays and cell-based Comet assays that measure DNA damage in cells were found [37]. [37]. 6. ECL ECL Sensor Sensor Arrays Arrays for for DNA DNA Oxidation Oxidation 6. Oxidative stress stress or oxidative DNA DNA damage damage is is an an imbalance imbalance between between the the production production of ROS and and Oxidative or oxidative of ROS the ability of the body to counteract their harmful effects [38]. ROS oxidizes guanosines (dG) in the ability of the body to counteract their harmful effects [38]. ROS oxidizes guanosines (dG) in the the DNA to to form form 8-oxodG, 8-oxodG, aa biomarker biomarker for for oxidative oxidative DNA DNA damage damage [39]. 8-OxodG serves serves as as aa co-reactant co-reactant DNA [39]. 8-OxodG for Osmium (phen-benz-COOH)]2+2+{bpy {bpy= =2,2′-bipyridine; 2,20 -bipyridine;phen-benz-COOH phen-benz-COOH for Osmium complex complex [Os(bpy) [Os(bpy)22(phen-benz-COOH)] = = (4(1,1phenanthrolin-6-yl)benzoic acid)}. ECL is generated due to selective catalytic oxidation (4(1,1phenanthrolin-6-yl)benzoic acid)}. ECL is generated due to selective catalytic oxidation of of 8III sites in the polymer, leading to the formation of a photoexcited OsII * species that 8-oxodG III sites oxodG byby OsOs in the polymer, leading to the formation of a photoexcited OsII* species that emits emits ECL [31]. The 64-microwell array described the above wasto used to develop anarray ECL ECL [31]. The 64-microwell array described in the in above sectionsection was used develop an ECL array for oxidative DNA damage. for oxidative DNA damage. 2+ 8-oxodG was in intact ds-DNA using using composite films of [Os(bpy) 8-oxodG wasdetected detected in intact ds-DNA composite films of 2 (phen-benz-COOH)] [Os(bpy)2(phen-benz(Scheme Nafion 7), polymer, reduced graphene (OsNG) [40]. A homogeneous solution of COOH)]2+7), (Scheme Nafionand polymer, and reducedoxide graphene oxide (OsNG) [40]. A homogeneous 2+ [Os(bpy)of -Nafion was drop-casted into the microwells of the PG chip array 2+-Nafion 2 (phen-benz-COOH)] solution [Os(bpy)2(phen-benz-COOH)] was drop-casted into the microwells of the PG containing a layer of reduced graphene oxide, followed by the deposition of oxidized DNA solution chip array containing a layer of reduced graphene oxide, followed by the deposition of oxidized DNA on the OsNG-modified films. Thefilms. PG chip placed microfluidic device and device washed, and ECL is solution on the OsNG-modified TheisPG chipin is the placed in the microfluidic and washed, then ECL captured using a CCDusing camera whilecamera applying 0.9 Vapplying vs. Ag/AgCl. Fenton's reagent was used as a and is then captured a CCD while 0.9 V vs. Ag/AgCl. Fenton's reagent model compound for DNA and polydeoxyguanosine (polyG) oxidation, and an increase in the ECL was used as a model compound for DNA and polydeoxyguanosine (polyG) oxidation, and an with the in increase in with the reaction time was observed 3). observed (Figure 3). increase the ECL the increase in the reaction(Figure time was 2+. Scheme 7. 7. Structure Structure of of [Os(bpy) [Os(bpy)2(phen-benz-COOH)] (phen-benz-COOH)]2+ Scheme . 2 For array standardization, the amount of 8-oxodG in DNA oxidized by Fenton’s reagent was For array standardization, the amount of 8-oxodG in DNA oxidized by Fenton’s reagent measured using UHPLC-MS/MS. The ratio of 8-oxodG to the total amount of dG increased with the was measured using UHPLC-MS/MS. The ratio of 8-oxodG to the total amount of dG increased oxidation time in the UHPLC-MS/MS experiments, which was used to obtain relative amounts of 8with the oxidation time in the UHPLC-MS/MS experiments, which was used to obtain relative oxodG. A calibration curve of % ECL increase vs. relative 8-oxodG concentration from UHPLCamounts of 8-oxodG. A calibration curve of %ECL increase vs. relative 8-oxodG concentration from MS/MS was used to quantitate 8-oxodG in the array (Figure 3d,e). The array was also used to measure UHPLC-MS/MS was used to quantitate 8-oxodG in the array (Figure 3d,e). The array was also used to metabolite-mediated DNA oxidation. This ECL array enabled 64 experiments in one run and only 1 measure metabolite-mediated DNA oxidation. This ECL array enabled 64 experiments in one run and μg of the DNA is required to perform an experiment. The detection limit was 1500 8-oxodG per 106 only 1 µg of the DNA is required to perform an experiment. The detection limit was 1500 8-oxodG per nucleobases [40]. 106 nucleobases [40]. Sensors 2017, 17, 1008 8 of 10 Sensors 2017, 17, 1008 8 of 10 Figure 3.3.ECL ECL array for polyG andoxidation. DNA oxidation. (a) Reconstructed ECL array data Figure array datadata for polyG and DNA (a) Reconstructed ECL array data demonstrating demonstrating ECL from spots of OsNG/polyG or DNA film treated with Fenton’s reagent in pH 7.2 ECL from spots of OsNG/polyG or DNA film treated with Fenton’s reagent in pH 7.2 phosphate phosphate buffer saline for various time intervals. Controls are polynucleotides treated only with buffer saline for various time intervals. Controls are polynucleotides treated only with buffer, with 4 or with only H2O2. Graphs show relative %ECL increase for (b) polyG and (c) buffer, with or only FeSO only FeSO with only H2 O2 . Graphs show relative %ECL increase for (b) polyG and (c) DNA. 4 DNA. (d) UHPLC-MS/MS ECLcalibration array calibration measured ratio of [8-oxodG]/([dG]+[8(d) UHPLC-MS/MS for ECLfor array showingshowing measured ratio of [8-oxodG]/([dG]+[8-oxodG]) oxodG]) for DNA reacted with Fenton’s reagent for different time and (e) then hydrolyzed. (e) for DNA reacted with Fenton’s reagent for different time and then hydrolyzed. Calibration plot for Calibration plot for % ECL increase vs. relative amount of 8-oxodG. Reprinted with permission from %ECL increase vs. relative amount of 8-oxodG. Reprinted with permission from [40], copyright (2016), [40], copyright (2016), American Chemical Society. American Chemical Society. 7. Summary 7. Summary and and Conclusions Conclusions It isisclear clearthat that multiple in vitro toxicity screening aretoneeded to reliable approach reliable It multiple in vitro toxicity screening tools aretools needed approach predictions predictions of in vivo toxicity risks. Our two-tiered approach of ECL microfluidic array and LCof in vivo toxicity risks. Our two-tiered approach of ECL microfluidic array and LC-MS/MS biocolloid MS/MS can biocolloid provide on detailed information ongenotoxicity possible pathways of genotoxicity reactors providereactors detailedcan information possible pathways of that are not forthcoming that are not forthcoming from bioassays, but are important components of a toxicity assessment. from bioassays, but are important components of a toxicity assessment. Microfluidic ECL arrays using Microfluidic ECL arrays using RuPVP/DNA/enzyme films detect relative rates of DNA adduct RuPVP/DNA/enzyme films detect relative rates of DNA adduct damage from reactive metabolites. 2+ detects DNA oxidation. LCdamage from reactive metabolites. [Os(bpy) 2+ detects [Os(bpy) DNA2(phen-benz-COOH)] oxidation. LC-MS/MS elucidates structures and 2 (phen-benz-COOH)] MS/MS elucidates structures measures the formationadducts rates ofand individual nucleobase and measures the formation ratesand of individual nucleobase can also detect theadducts amounts of can also detect the amounts of 8-oxodG formed. Molecular pathway information obtained by these 8-oxodG formed. Molecular pathway information obtained by these approaches can be integrated with approaches can be integrated withfuture other predictions bioassays toofprovide better of future predictions of genotoxicity other bioassays to provide better genotoxicity chemical and drug candidates. of chemical and drug candidates. Acknowledgments: The work described herein and the preparation of this article were supported financially by the National Institute of Environmental Health (NIEHS), NIH, USA.were Grant ES03154.financially The authors Acknowledgments: The work described herein and Sciences the preparation of this article supported by thank the coworkers collaborators named joint publications for their many excellent contributions this the National Instituteand of Environmental HealthinSciences (NIEHS), NIH, USA. Grant ES03154. The authorsto thank research, without which progress would not have been possible. the coworkers and collaborators named in joint publications for their many excellent contributions to this Conflicts of Interest: Theprogress authors would declarenot no conflict of interest. research, without which have been possible. Conflicts of Interest: The authors declare no conflict of interest. References 1. Nassar, A.; Hollenburg, P.F.; Scatina, J. 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