Dev Genes Evol DOI 10.1007/s00427-005-0008-9 ORIGINA L ARTI CLE Peter W. Osborne . Peter K. Dearden Expression of Pax group III genes in the honeybee (Apis mellifera) Received: 30 March 2005 / Accepted: 20 May 2005 # Springer-Verlag 2005 Abstract Pax group III genes are involved in a number of processes during insect segmentation. In Drosophila melanogaster, three genes, paired, gooseberry and gooseberry-neuro, regulate segmental patterning of the epidermis and nervous system. Paired acts as a pair-rule gene and gooseberry as a segment polarity gene. Studies of Pax group III genes in other insects have indicated that their expression is a good marker for understanding the underlying molecular mechanisms of segmentation. We have cloned three Pax group III genes from the honeybee (Apis mellifera) and examined their relationships to other insect Pax group III genes and their expression patterns during honeybee segmentation. The expression pattern of the honeybee homologue of paired is similar to that of paired in Drosophila, but its expression is modulated by anterior– posterior temporal patterning similar to the expression of Pax group III proteins in Tribolium. The expression of the other two Pax group III genes in the honeybee indicates that they also act in segmentation and nervous system development, as do these genes in other insects. Keywords Honeybee . Drosophila . Evolution . Development . Segmentation . Pax group 3/7 Introduction Segmentation is a well-studied process in Drosophila melanogaster, providing an excellent comparative system for examining the molecular control of segmentation in Communicated by P. Simpson P. W. Osborne . P. K. Dearden Laboratory for Development and Evolution, Biochemistry Department, University of Otago, Dunedin, New Zealand P. K. Dearden (*) Biochemistry Department, University of Otago, P.O. Box 56 Dunedin, New Zealand e-mail: [email protected] other species. The genes required for Drosophila segmentation were identified by the work of Nüsslein-Volhard and Wieschaus (1980), and subsequent studies have provided a great deal of information on the interactions and activities of these genes (reviewed in Davis and Patel 2002). Drosophila have long-germ embryos in which the complete body plan is represented at the blastoderm stage. This form of development is a derived process that is not representative of ancestral insect segmentation or of segmentation in the majority of insects (Patel et al. 1994). In other insects, three major classes of germ type have been described: long, short and intermediate germ (Patel et al. 1994). Short-germ embryos form all but their most anterior segments by growth after the blastoderm stage, and intermediate-germ embryos define all but the abdomen in the blastoderm. These three classes of germ development are not distributed phylogenetically implying that transitions between short-, intermediate- and long-germ development have occurred a number of times in the evolution of insects (Sander 1976; Patel et al. 1994). We have investigated two phases of segmentation in the honeybee (Apis mellifera; order Hymenoptera). The honeybee is formally a long-germ insect with large embryos, no head involution or germband extension/retraction (Fleig 1990). The lineage leading to Hymenoptera has been separated from that leading to Diptera since at least the Triassic, 200–250 million years ago (and probably since the Permian) (Hennig 1981). Traditionally, Hymenoptera have been thought to be phylogenetically intermediate between the Diptera and Coleoptera (Hennig 1981; Whiting et al. 1997), and several molecular phylogenies (Whiting et al. 1997; Kjer 2004) and combined molecular and morphological phylogenies (Whiting 1998) have supported this view. Recent molecular phylogenetic studies, however, have placed them as an early branching of the Endopterygota, sister to a grouping of Coleoptera, Lepidoptera and Diptera (Whiting 2002; Krauss et al. 2004). Phylogenies based on concatenated EST sequences (Philippe et al 2005) place Coleoptera and Hymenoptera as a separate monophyletic group with Lepidoptera and Diptera as its sister group. Within the major Endopterygota orders, the three different germ types are widely distributed (Sander 1976; Patel et al. 1994). Hymenoptera and Coleoptera have all three types, Lepidoptera have both intermediate- and long-germ types and Diptera display only long-germ development. It is likely that the ancestral germ type in the Endopterygotes is intermediate-germ development (Patel et al. 1994). Although both honeybees and Drosophila exhibit long-germ development, it is not clear if this form of development is similar by descent or whether it has been independently derived in each lineage. The morphology of honeybee embryogenesis is well studied (for example, Nelson 1915; DuPraw 1967; Fleig and Sander 1986), allowing gene expression patterns to be interpreted in the light of well-characterised stages of development. In addition, the honeybee genome has recently been sequenced. Culture of honeybees is common practice, embryos are easy to obtain in large quantities and techniques are available for studying honeybee development (Beye et al. 2002; Osborne and Dearden 2005). Molecular studies of honeybee development have examined the expression of even-skipped (Binner and Sander 1997) and engrailed-like proteins during segmentation (Fleig 1990; Beye et al. 2002) and Hox gene expression (Walldorf et al. 2000). One important set of genes regulating segmentation in arthropods are the Pax group III genes (PGIII). In Drosophila, these genes include the pair-rule gene paired (prd) and related genes gooseberry (gsb) (a segment polarity gene) and gooseberry-neuro (gsb-n) (involved in neural development) (Gutjahr et al. 1993a,b). All of these genes encode transcription factors with two DNA binding motifs: a paired domain and a homeodomain (Breitling and Gerber 2000). These genes have been examined in a number of arthropods, and their expression demonstrates both underlying similarities in the segmentation gene cascade of arthropods and also modifications of the cascade in arthropods with different germ types (Davis et al. 2001; Dearden et al. 2002). An antibody raised against all Drosophila PGIII genes cross-reacts in Tribolium and indicates that at least one PGIII gene is expressed in a pair-rule manner, but that its expression is deployed in an anterior to posterior progression, reflecting the intermediate germ development of this species (Davis et al. 2001). In Schistocerca, two PGIII genes [pairberry1 (pby1) and pby2] are expressed in a pattern consistent with pair-rule patterning but reflecting the short-germ nature of Schistocerca development (Davis et al. 2001). We have used the expression of the PGIII genes as a marker for pair-rule and segment polarity patterning in the honeybee. Materials and methods Molecular cloning The honeybee genes Ampaired (Amprd), Amgooseberry1 (Amgsb1) and Amgooseberry2 (Amgsb2) were located in the honeybee genome sequence using tBLASTn align- ments (Altschul et al. 1990) using the Drosophila protein sequences from paired (prd), gooseberry (gsb) and gooseberry-neuro (gsb-n). Contigs containing the genes were downloaded from the honeybee genome project, and intron/exon structure was predicted in order to determine the coding sequence. These predictions were initially carried out using the GeneMachine server (Makalowska et al. 2001) by pairwise comparisons with Drosophila PGIII genes. Subsequently, the predicted genes were compared to automated predictions of honeybee genes using gnomon (NCBI). Intron/exon structures were drawn using GenePalette (Rebeiz and Posakony 2004). Parts of these predictions (including the paired domain and the homeodomain) were confirmed by RT-PCR. Poly A+RNA was extracted from mixed stages of embryos using an mTRAP midi kit (Active Motif). cDNA was transcribed from poly A+RNA using Superscript II reverse transcriptase (Invitrogen), and RT-PCR was conducted using the following primer pairs: [Am-prd RNA 5′ ATGACGGTGACCACTAACTTC TCG; Am-prd RNA 3′ CAACTGCTTTCTCAGCCT CGC]: [Am-prd RNA2 5′ CAAGGACGCGTCAATCAAC TC; Am-prd RNA2 3′ CAACTGCTTTCTCAGCCT CGC]: [Am-gsb1 RNA 5′ GTGTGAATCAACTTGGAGGGG; Am-gsb1RNA 3′ GTTTGCGAAGCCTTGCTCGCC]: [Am-gsb2 RNA 5′ GGACAGGGACGTATGAATC; Am-gsb2 RNA 3′ CACTTGGATCCTTGCTTCCG]. PCR products were cloned into pGEM-T Easy vector (Promega). Plasmids with appropriately sized inserts were extracted from bacterial cultures with the QIAprep Spin miniprep kit (Qiagen) and were sequenced using ABI Big Dye 3 chemistry and an ABI377 DNA sequencer. Phylogenetic analysis Phylogenetic analysis was conducted on predicted honeybee protein sequences and pax protein sequences downloaded from NCBI. The paired box regions of these genes were aligned using CLUSTALX (Thompson et al. 1994). Parsimony and distance analysis was performed using PAUP4.0 b10 (Swofford 1998), with missing characters defined as extra characters for the parsimony analysis. Maximum likelihood analysis was performed using PHYLIP (Felsenstein 2004). The alignment was first bootstrapped (100 times with the input order scrambled once per bootstrap) using SEQBOOT, and then phylogenetics was performed using PROML. Majority rule (extended) consensus trees were identified using CONSENSUS. Maximum likelihood quartet puzzling was performed using TREEPUZZLE 5.0 (Strimmer and von Haeseler 1996). Trees were drawn using TREEVIEW (Page 1996). In situ hybridisation Honeybee embryos were collected, prepared and stained as described previously (Osborne and Dearden 2005). Probes for in situ hybridisation were produced using run-off transcription from fragments of Amprd, Amgsb1 and Amgb2 measuring 857, 813 and 627 bp, respectively. Honeybee embryos, stained for a gene of interest, were incubated in 1 μg/ml DAPI in PBS+0.1% Tween 20 for 1 h and destained in PBS+0.1% Tween 20 for 15 min. Embryos were mounted in glycerol and observed with bright field optics (alkaline phosphatase staining) or using incident light with a filter for DAPI, on an Olympus BX51 upright microscope. Images were captured using a Magnafire (Optronics) digital camera and Magnafire software. Immunohistochemistry Expression of honeybee engrailed-like proteins were examined using the 4D9 cross-reacting antibody (Patel et al. 1989a,b) after in situ hybridisation. Embryos were washed with PBS+0.1% Triton X-100, placed in 0.01 M sodium citrate, pH 6, and incubated in a boiling water bath for 1 h. Embryos were then immunostained using the protocol of Patel et al. (1994). Primary antibody was used at a 1:1 dilution and the secondary antibody, goat α-mouse-HRP (Jackson Immunochemicals), at 1:300. HRP was detected using DAB (Sigma). Embryos were mounted and imaged in 70% ultrapure glycerol. Results Sequence analysis We isolated three homologues of the PGIII subgroup of pax genes from the honeybee. tBLASTn searches (Altschul et al. 1990) indicate that these three sequences are the only PGIII gene homologues in version 1.2 of the honeybee genome. Reciprocal blast searches with the three Drosophila PGIII homologues imply that the three genes isolated are homologues of paired, gooseberry and gooseberryneuro. We have named these genes Ampaired (Amprd), Amgooseberry1 (Amgsb1) and Amgooseberry2 (Amgsb2). Examination of the honeybee genome assembly (Fig. 1a) indicates that Amgsb1 and Amgsb2 are tandemly duplicated (on an unplaced contig) approximately 40 kb from each other, and the Amprd sequence is located in linkage group 14. The Drosophila gooseberry genes are organized in a similar fashion to those of honeybees with the two genes spaced 10 kb apart on chromosome 2R. The honeybee gsb genes are transcribed in the same direction, whereas the Drosophila homologues are transcribed in opposite directions. RT-PCR analysis indicates that the automated gnomon gene predictions (NCBI) for both the Amprd (hmm2453) and Amgsb1 (hmm3865) genes (Fig. 1a) are not accurate. The first exon of Amprd is further downstream than predicted, and one of the middle exons of Amgsb1 is absent from the automated prediction. In addition, we have predicted a different 5′ end to Amgsb2 (hmm3866). To understand the evolution of these genes in holometabolous insects, we also examined the Anopheles genome (Build 2, version 1) for PGIII genes. In Anopheles, only two PGIII genes could be found: ENSANGG00000020676 (Agpax3/7-1) and ENSANGG00000020689 (Agpax3/7-2). These genes are found closely linked on chromosome 3 (25 kb apart) and are transcribed in opposing directions (Fig. 1a,ii). We examined the flanking genes in this region to determine if they were similar to those surrounding the linked gooseberry genes in Drosophila. In Drosophila, the two gooseberry genes, on chromosome 2, are bounded by goliath (Gol), flanking gsb and Neuropeptide-like precursor 1 (Nlnp1), flanking Gsb-n. In Anopheles, homologues of these two genes flank Agpax3/7-1 and Agpax3/7-2. Aggoliath (ENSANGG00000013591) is located next to Agpax3/7-1 [separated by a predicted gene encoding a protein with weak similarity to microtubule-associated proteins (ENSANGG00000013707)] and AgNeuropeptide-like precursor 1 (ENSANGG00000020699) next to Agpax3/7-2 [separated by two predicted genes encoding peritrophinlike proteins (ENSANGG00000013661 and ENSANGG00 000020716)] (Fig. 1a,ii). The contig that contains honeybee Amgsb1 and Amgsb2 contains only one other predicted gene (hmm3867), which has some similarity to Nlnp1 and is located next to Amgsb2 (Fig. 1a,i). No predicted genes with strong similarities to gol are present in the current version of the honeybee genome. Phylogenetic analysis was performed from an alignment of the isolated sequences and pax gene homologues for other species (data not shown). The phylogenetic relationship of Amprd, Amgsb1 and Amgsb2 compared with the other pax genes indicates that they fall into the PGIII category (Davis et al. 2001; Dearden et al. 2002). To understand the relationship between insect PGIII genes, phylogenetic analysis was carried out on a multiple protein alignment of the paired domain of arthropod PGIII (Fig. 1b) proteins rooted with mouse and human pax3 and pax7 sequences. To infer some relationships between these genes, four methods of phylogenetic analysis, parsimony, distance, maximum likelihood and maximum likelihood quartet puzzling, were carried out (Fig. 1c). In all analyses, human and mouse pax genes formed a separate clade. The chelicerate sequence Tetranychus urticae Pax3/7 appeared basal to insect sequences (except in the parsimony tree). The relationship of the insect PGIII genes was the most difficult to interpret, with the distance tree showing no resolution of these sequences. The other techniques gave better resolution, but bootstrap values are low. This difficulty is explained by the lack of significant sequence variation in the paired domain, but the analysis is not improved by inclusion of the homeobox domain or linker region of the sequences (data not shown). The placement of the Schistocerca americana pairberry sequences is consistent in most analyses. These two genes do not show strong relationships with either paired or gooseberry genes. The relationships of the holometabolous Fig. 1 Phylogenetic and bioinformatic analyses of honeybee PGIII genes. a Predicted gene arrangements of the gooseberry locus and flanking genes from (i) honeybee, (ii) Anopheles gambiae (with three predicted genes removed for clarity; see text) and (iii) Drosophila melanogaster. b Multiple protein alignment of the paired and homeodomains of PGIII proteins from D. melanogaster (Dm prd, Dm gsb-n and Dm gsb), Schistocerca americana (Sa pby1 and Sa pby2) and Tetranychus urticae (Tu pax3/7) compared with honeybee PGIII proteins (Am prd, Am gsb1 and Am gsb2). c Results of phylogenetic analyses of the paired domain of PGIII proteins. Each tree is rooted with mouse and human pax3 and pax7. (i) Distance cladogram; (ii) maximum likelihood cladogram; (iii) parsimony cladogram; and (iv) maximum likelihood quartet puzzling. Details of phylogeny reconstruction are in Materials and methods pax3/7 genes, however, cannot be determined from these analyses. Amprd expression Expression of the Amprd gene was examined using in situ hybridisation. Amprd RNA is first expressed at stages 4 and 5 [25–33 h after egg laying (AEL)] (DuPraw 1967), in a broad stripe of cells, without well-defined boundaries, approximately a third of the way from the anterior of the embryo (Fig. 2a). Unlike Drosophila (Gutjahr et al. 1993a) and Tribolium (Davis et al. 2001), there is no anterior expression prior to the formation of this first stripe. Before the onset of stage 6 (approximately 33 h AEL), this initial stripe of cells refines its expression into a sickle shape patch of cells that is wider at the ventral end (Fig. 2b,c). By examining the later morphology of the embryo in relation to the late stripes of Amprd RNA, we can determine that this initial stripe is in the presumptive mandibular segment. As development proceeds, this initial stripe is joined by a broad stripe of Amprd-expressing cells just posterior to the mandibular stripe. This ‘primary’ stripe of Amprd-expressing cells splits into two thinner (secondary) stripes, as a second primary stripe forms posterior to it. Splitting occurs by a reduction of Amprd RNA expression in cells in the center of the primary stripe. This pattern continues down the embryo with a primary stripe forming and beginning to Fig. 2 Expression of Amprd RNA in honeybee embryos detected using in situ hybridisation. a–f Bright-field images of embryos between stages 4 and 8; arrows indicate the presumptive mandibular segment where known. g–l Fluorescent images of the same embryos stained with DAPI to indicate developmental stage. m–p Brightfield images of embryos between stages 8 and 9. Scale bars indicate 100 μm. All embryos, unless otherwise stated, are oriented with anterior to the left and dorsal up. a Embryo showing initial Amprd RNA expression, with one stripe of cells in the mandibular segment. This is rapidly joined by a primary stripe of Amprd just posterior to it, which splits as a second primary stripe (marked with asterisk in B) appears in more posterior regions (b). This pattern continues down the embryo, with broad primary bands appearing and splitting into secondary bands (c) as the first signs of gastrulation occur (d and j) (asterisk marks the youngest Amprd primary stripe). As gastrulation proceeds (e, k, f, l), Amprd expression is lost from the most anterior secondary stripes in anterior to posterior order. By mid-late stage 8 (m, embryo viewed on the ventral surface), all but the most posterior secondary stripes of Amprd have been lost, and expression domains appear in the mandibular, first maxillary and second maxillary lobes (asterisked in m, n and p). Arrow marks T1 segment in m, n and p. These patterns refine through stage 9 (n, ventral view) when single cells (arrowed) in the central nervous system in each segment also express Amprd RNA (o, ventral view). By late stage 9, Amprd RNA is also found in the labrum (arrowhead in p, ventral view) split as the next primary stripe forms (Fig. 2b–d). By the end of stage 5, five primary stripes of Amprd have formed, two of which have already completely split into secondary stripes (Fig. 2c). Early in stage 6, three primary stripes have resolved into secondary stripes with the fourth beginning to split (Fig. 2d). As development continues, the final stripes form at the posterior of the embryo. By mid-stage 6, a total of 15 secondary stripes of cells expressing Amprd have appeared along the A/P axis. These stripes do not extend to the dorsalmost cells of the embryo, unlike the full circumferential rings of Drosophila (Gutjahr et al. 1993a). As the last two stripes form, the stripes of Amprd RNA begin to fade in the same anterior to posterior order that they formed (Fig. 2e,f). Prior to the loss of the final Amprd stripes, a second phase of expression begins in the pro-cephalon. This expression begins in mid-late stage 8 (about 47 h AEL) with domains of Amprd RNA expression appearing in the mandibular lobe, the medial side of the first maxilla and weakly in cells in the second maxilla (Fig. 2m). At stage 9 (approximately 48 h), the expression domains in the mandible and first maxilla reduce in size, but expression levels become higher and more sharply demarcated in all three domains (Fig. 2n). At this point, there is also expression in a single cell in the CNS on either side of the midline at the posterior of every segment (Fig. 2o). At this time, another domain of expression is established in the labrum. This expression is initially very weak but increases until four small distinct groups of cells express Amprd (arrowhead in Fig. 2p). The expression of Amprd in the head continues throughout stage 9 and into stage 10 (60 h AEL). Amgsb1 expression Amgsb1 RNA expression first appears during late stage 5 as two stripes of cells in the presumptive mandibular and first maxillary segment (Fig. 3a, asterisks). Very rapidly, stripes of cells in the presumptive second maxillary (asterisk in Fig. 3b) and first thoracic segments then begin to express Amgsb1. Initially, the stripe in the second maxillary segment appears much fainter than those in the first maxillary and first thoracic, but expression levels quickly become similar in each stripe. Stripes of cells then begin to express Amgsb1 in anterior to posterior order in each segment, during the closure of the ventral ectoderm over the mesoderm (Fig. 3c–f). Stripes form in each segment, are broader at the ventral surface, narrow towards the dorsal regions of the embryo and are restricted to the ectoderm. Fig. 3 Expression of Amgsb1 RNA in honeybee embryos detected using in situ hybridisation. Scale bars denote 100 μm. Amgsb1 RNA expression first appears at stage 5 in two stripes of cells in the presumptive mandibular and first maxillary segments (a, arrows denote damage to the posterior of the embryo). Stripes then appear in the second maxillary segment and the first thoracic segment (b, asterisk indicates faint stripe in the second maxillary segment; arrows indicate damaged areas of the embryo). During stage 6, Amgsb1 RNA appears in stripes of cells in the ectoderm (c, lateral view). Stripes appear in anterior to posterior sequence as the ectodermal plates close over the mesoderm (d ventral view; e, f ventral views). g, h Ventral and lateral views, respectively, of embryos in stage 7 showing the Amgsb RNA expression domains becoming restricted to the central nervous system. In stages 8 and 9 (i, j ventral views), Amgsb1 expression is restricted to the CNS and a domain between the gnathum and thorax (asterisk in i and j) As the ectodermal plates fuse, the level of Amgsb1 RNA expression in each stripe of cells increases, but the domains become restricted to more ventral regions. This continues throughout stages 7 and 8, after the ectoderm plates have fully fused (Fig. 3g,h). During this phase, there is also a patch of Amgsb1 expressing cells in the protocerebrum. As the stripes of cells lose expression, Amgsb1 becomes restricted to the CNS (Fig. 3i,j). This is maintained throughout stage 9 when Amgsb1 expression also appears in cells located between the first thoracic and second maxillary segments (asterisks in Fig. 3i,j). also appears in cells located between the first thoracic and second maxillary segments (asterisks in Fig. 4c,d). Amgsb2 expression Expression of Amgsb2 RNA appears later in development than that of Amgsb1, beginning during stage 7. Initially, expression appears in segmentally reiterated stripes of cells along the ventral surface of the embryo (Fig. 4a). These stripes appear simultaneously and do not extend laterally as far as the Amgsb1 stripes. In stage 8, these stripes of cells become restricted to the ventral midline (Fig. 4b). Through late stage 8 and stage 9, the expression of Amgsb2 RNA becomes further restricted to neurectoderm cells in the posterior of each segment (Fig. 4c,d). Amgsb2 expression Detection of honeybee engrailed-like proteins and Amprd, Amgsb and Amgsb2 RNA Expression of honeybee engrailed-like proteins was examined with the cross-reacting antibody 4D9 (Patel et al. 1989a,b). It is not clear which of the two engrailed gene protein products (Walldorf et al. 1989) or if both are recognised by the 4D9 antibody, but they have similar expression patterns (data not shown). The expression of 4D9 cross-reactivity has already been studied in honeybees (Fleig 1990). Stripes of cells expressing engrailed-like proteins appear in the gnathum and thorax simultaneously, with pair-rule modulation, and in anterior to posterior sequence in the abdomen during gastrulation. Initially, these stripes are expressed across the prospective mesoderm but, as the gastrulation furrow moves posteriorly, immunoreactivity becomes restricted to the ectoderm (Fleig 1990). Double staining for engrailed-like proteins and Amprd RNA was made difficult due to the stripes of cells expressing engrailed-like appearing when most of the Amprd stripes have disappeared. The two genes’ expression, how- Fig. 4 Expression of Amgsb2 RNA in honeybee embryos detected with in situ hybridisation. Scale bars represent 100 μm; embryos are oriented with anterior to the left, looking down on the ventral surface. a Stage 7 embryo showing the initial stages of Amgsb2 expression in stripes of cells across the ventral surface of the embryo; these stripes become restricted to around the ventral midline in stage 8 (b), and Amgsb2 RNA expression becomes restricted to cells in the neurectoderm in late stage 8 and stage 9 (c and d, respectively). RNA expression is also seen in a domain similar to that of Amgsb1 at the boundary between the gnathum and the thorax (asterisks in c and d) ever, overlap by one to two cells (Fig. 5a) for a short time before the Amprd stripes fade. Amgsb1 and Amgsb2 expression was easier to co-visualise with engrailed-like, as the latter’s expression stabilises after the ectoderm plates have closed. Engrailed-like expression overlaps both Amgsb1 (Fig. 5b) and Amgsb2 expressions (Fig. 5c) by one to two cell rows. This overlap implies that Amprd, Amgsb1 and Amgsb2 are expressed in the same cells and may have a role in demarcating the parasegment boundaries in honeybees. Overlapping expression domains of engrailed-like and PGIII genes are observed in Drosophila, Tribolium and Schistocerca (Gutjahr et al. 1993a,b; Davis et al. 2001). Discussion Evolution of holometabolous PGIII genes We have identified three PGIII genes in the honeybee and examined their relationships and expression. We have also Fig. 5 Double staining for honeybee engrailed-like proteins and Amprd, Amgsb1 and Amgsb2 RNA. Scale bars represent 50 μm; embryos are oriented with anterior to the left. a Double staining for Amprd RNA (blue) and engrailed-like proteins (brown) in a stage 6 honeybee embryo, lateral view. At this stage, secondary stripes of Amprd are disappearing as engrailed-like protein expression appears. Arrows indicate cells expressing both Amprd and engrailed-like. Amprd expressing cells form a stripe anterior to but overlapping by one to two cell rows the stripes of engrailed-like expression. b Dual labelling of Amgsb1 RNA (blue) and engrailed-like proteins (brown) in a stage 8 embryo (ventral view of thoracic regions). Arrows indicate groups of cells expressing both Amgsb1 and engrailed-like. The Amgsb1 RNA expression domain lies just anterior to the stripe of engrailed-like expressing cells and overlaps with it by one to two cell rows. c Dual labelling of Amgsb2 RNA (blue) and engrailed-like proteins (brown) in a stage 8 embryo (ventral view of gnathal regions). The Amgsb2 expression domain lies anterior to the stripe of engrailed-like expressing cells and overlaps it by one cell row (arrows indicate cells expression both Amgsb2 and engrailed-like) examined PGIII gene sequences in the Anopheles genome. Little sequence difference exists between PGIII genes in the holometabolous insects, making phylogenetics with these sequences difficult. Using four methods of phylogeny reconstruction, we have been unable to assign orthology between the holometabolous PGIII genes. The expression pattern and genomic location of Drosophila paired and Amprd provide better evidence of orthology. Both are located in a genomic area distant from the two gsb genes, both are the earliest expressed genes of the PGIII group and both appear to act as pair-rule genes. Due to these similarities, we believe that we are justified in naming this gene Amprd, to reflect its similarities to paired, rather than naming all the honeybee genes ‘pairberry genes’ as has been done for Schistocerca (Davis et al. 2001) and spiders (Schoppmeier and Damen 2005). The gooseberry genes of Apis, Drosophila and the PGIII genes of Anopheles are closely related and tend to come out in the phylogenetic analyses together. These genes are linked in all three species, and the chromosomal regions they lie in have similar genes surrounding them. This implies that the Anopheles genes are gooseberry homo- logues, and that this species is lacking a ‘paired’ gene. These findings further imply that gooseberry genes are descended from an ancestral gooseberry gene created by a duplication of a ‘pairberry’ gene before the divergence of the holometabolous insects. Specific relationships between each gooseberry gene cannot be identified, perhaps indicating that these genes were independently duplicated after the holometabolous divergence. Because of this inability to assign homology between specific gooseberry genes, we have designated the honeybee gooseberry genes Amgsb1 and Amgsb2 to avoid implying any specific orthology between these genes and any specific gooseberry gene in Drosophila or Anopheles. The relationship between the paired/gsb genes of holometabolous insects with the pairberry genes of Schistocerca (Davis et al. 2001) is also unclear. The expression pattern of both pairberry genes, as assayed by a crossreacting antibody, encompasses the expression pattern of prd and both gsb genes in honeybees and Drosophila, but the pairberry genes do not cluster strongly with either prd or gsb type genes in the phylogenetic analysis. This probably indicates that the two pairberry genes are a separate duplication of an ancestral PGIII gene in insects that also gave rise to prd and the gsb genes. The evolution of PGIII genes in insects appears to be complex, with a number of independent duplications in various lineages leading to subdivision of the expression pattern and activity of an ancestral PGIII gene. Honeybee segmentation The expression of PGIII genes in the honeybee gives insight into two phases of the segmentation gene cascade. In Drosophila, PGIII genes are involved in both pair-rule patterning and the segment polarity system (Gutjahr et al. 1993a,b; Davis et al. 2001). The expression patterns of PGIII genes in the honeybee indicate a similar range of function (Fig. 6). Pair-rule patterning seems to be a conserved process in insects as evidence for pair-rule patterning has been observed in Diptera (Nüsslein-Volhard and Wieschaus 1980), Coleoptera (Brown et al. 1994, 1997; Patel et al. 1994; Maderspacher et al. 1998; Schröder et al. 1999; Davis et al. 2001) and Orthoptera (Davis et al. 2001). The question of the presence of pair-rule patterning outside the insects is yet to be resolved (Dearden et al. 2002; Davis and Patel 2003; Chipman et al. 2004; Schoppmeier and Damen 2005). In honeybees, Amprd expression, and expression of an even-skipped protein recognised by the 2B8 cross-reacting antibody (Binner and Sander 1997), shows two segment periodicity, indicating that pair-rule patterning plays a role in honeybee segmentation. In honeybees, the first expression of Amprd is in a stripe of cells in the mandibular segment, similar to Drosophila and Tribolium PGIII expression (Davis et al. 2001) (Fig. 6). Primary pair-rule stripes then appear and split in anterior to posterior sequence. The phasing of the primary stripes of Amprd is identical to that of prd in Drosophila (Gutjahr Fig. 6 Summary cartoon of PGIII gene expression during segmentation in the honeybee. Expression patterns of PGIII genes are compared with that of engrailed-like genes at representative times during four stages of embryogenesis, from the ventral surface of the embryos. All of the PGIII genes are expressed across the putative parasegment boundary (horizontal lines), as implied by their expression domains overlapping that of engrailed-like genes. a Amprd (blue) and engrailed-like (green) expression. In stage 4, expression is present in a mandibular stripe and, in late stage 4, a primary stripe in both first and second maxillae. In stage 5, primary stripes of Amprd form and split in anterior–posterior sequence. In stage 6, during gastrulation (shown by vertical lines), Amprd expression disappears forming stripes in anterior to posterior progression, overlapping with the beginnings of engrailed-like expression (stripes forming in anterior–posterior sequence in the abdomen) by a few stripes. Amprd is not expressed in stripes in stage 7. b Amgsb1 (red) and engrailed-like (green) expression during segmentation. Amgsb1 expression first appears in stripes that do not include the ventralmost regions of the embryo, in stage 5, forming in anterior to posterior sequence. All segments form stripes in stage 6, overlapping by a few cells with engrailed-like expression. Neither engrailed-like nor Amgsb1 are expressed in the ventral, invaginating, regions of the embryo. By stage 7, Amgsb1 expression is restricted to the CNS. c Amgsb2 (purple) and engrailed-like expression (green). Amgsb2 expression does not appear until stage 7, when it is expressed in all segments in a stripe of cells in the CNS, overlapping by one to two cells with the domain of engrailed-like expression et al. 1993a) and Tribolium (Davis et al. 2001). The first stripe to form is in the mandibular segment, and this stripe does not split. A primary stripe then forms in the first and second maxillary segments, the first and second thoracic segments and so on down the germband (Fig. 6). The major difference between the expression of Amprd in honeybees and prd in Drosophila is that the primary stripes of Amprd split into secondary stripes soon after they have formed, in anterior–posterior sequence, whilst in Drosophila, all of the primary stripes form before splitting occurs (Gutjahr et al. 1993a). The expression pattern of Amprd implies that the segmentation mechanism of honeybees is temporally modulated in an anterior to posterior manner, a modulation not seen in the expression patterns of most segmentation genes in Drosophila. Indeed, all of the segmentation genes examined thus far in Apis, apart from Amgsb2, from both the pair-rule and segment polarity phases of segmentation, show this temporal regulation. This implies that temporal regulation plays a major role in the molecular control of segmentation in this long-germ insect. In Drosophila, paired regulates gooseberry which in turn transactivates gooseberry-neuro (Gutjahr et al. 1993b; Li and Noll 1993). While deletions of each of these genes can be rescued by one of the other genes, their different temporal expression gives them unique functions (Li and Noll 1994). One of the main functions of these three genes is to regulate engrailed and thereby the parasegment boundary (Gutjahr et al. 1993b; Li and Noll 1993; DumanScheel et al. 1997). Double labelling embryos for any of the honeybee PGIII genes and engrailed-like proteins indicate that PGIII expression overlaps with engrailed-like by one to two cell rows as they do in Drosophila. This implies that Amprd, Amgsb1 and Amgsb2 probably have functions similar to their Drosophila homologues, despite having slightly modified expression patterns. Evolution of long germband segmentation A. mellifera, like Drosophila, is a long-germ insect, with all of the body regions of the embryo represented in the blastoderm, but it is not known if these two forms of longgerm development are independent derivations from an intermediate germ ancestor. Studies of the expression patterns of PGIII genes (this study) and previous studies of engrailed-like (Fleig 1990) and even-skipped (Binner and Sander 1997) expression in the honeybee indicate that, unlike Drosophila, much of the segmentation cascade is modulated by anterior–posterior temporal control. Two scenarios may explain this difference. It is possible that Apis segmentation represents a form of segmentation intermediate between the long-germ development of Drosophila and the intermediate germ development proposed for the ancestor of holometabolous insects, perhaps similar to that of Tribolium. The evolution of the derived Drosophila form of development would thus be characterised by loss of temporal modulation of segmentation. The other scenario is that Apis segmentation represents an independent derivation of long germband segmentation, in which temporal modulation plays a major role in the molecular control of segmentation. This scenario is supported by recent molecular phylogenies of holometabolous insects that indicate that Hymenoptera are not the sister group of Diptera and groups of holometabola with intermediate germband development are closer relatives of the Diptera (Whiting 2002; Krauss et al. 2004; Philippe et al. 2005). To determine which of these scenarios is accurate, it will be necessary to investigate in detail the molecular control of segmentation in both Apis and Tribolium and, in particular, to determine which characters are ancestral and which are derived. Clearly, the Drosophila mode of segmentation is not the only way to produce a long-germ embryo. Identification of the molecular basis of the temporal modulation of segmentation in short germ, intermediate germ and Apis will be particularly important to the understanding of the evolution of segmentation mechanisms. 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