Lesson Plan Day: Date: Class: 5 th Year Length of class: 80 mins Subject: Biology – Genetics Topic: DNA structure, replication and profiling. Introduction: Within the topic of genetics and the structure of DNA, many misconceptions can easily arise from prior knowledge acquired by students from social media, media and home, and ill-directed information in lessons. This is why it is integral to the teaching of this topic that misconceptions be addressed and fixed while building this information for students, so that they do not leave second level to study science at third level with incorrect information. Previous Knowledge and Experience:For this topic, I would expect students would have limited previous knowledge. They should be familiar with terms and concepts used within the topic from previous biological cell lessons. For example, all students should be familiar with cell structure and the fact that DNA is located within the nucleus of the cell, they should also be able to recognise the difference between chromosomes and genes, and how they are linked. With regards to genes, students should also be familiar with the concept of a genome and gene expression, and should be able to link this to the structure of DNA throughout the lesson. Students will also have knowledge on cell division, including the difference between mitosis and meiosis, and how mutations such as cancer can occur from these processes. Students should also have previous knowledge in the area of classification and heredity, and should be familiar with the concept of variation between and within species. All of this previous knowledge that the students should have, is outlined by the Leaving Certificate Biology syllabus under the topic codes of: 2.1.2, 2.1.3, 2.1.4, 2.3.1, 2.3.2, 2.3.3, 2.3.4, 2.3.5, 2.3.6, 2.3.7, 2.3.8, 2.5.1, 2.5.2, 2.5.3 (NCCA 2001). Some knowledge the students possibly have surrounding this topic that may not be linked to specific previous lessons, may be the shape of a DNA molecule. This could be common knowledge picked up from television, or perhaps posters found in the science room/lab. I would expect all students to have an idea of the shape of a DNA molecule, but perhaps they may not know the specific name – double helix. Knowledge that I would not expect the students to be aware of would be the fact that DNA can coil up, i.e. is not in straight lines. Also, students may not know of the detailed structure of these strands, e.g. nucleotides, amino acids etc. I would also expect that they would not be aware of the four bases that make up DNA, their names, and how they specifically combine – adenine, cytosine, guanine, and thymine. I would also presume that the students would be unaware of codons within DNA for specific amino acids, and similarly I would expect they would not be aware of non-coding DNA. Aims: To introduce the topic of DNA structure, details of how these structures combine, and the significance of these combinations. To overcome pupils misconceptions surrounding DNA structure and its purpose. Objectives: Pupils should gain an understanding of how the structure of DNA is imperative to its function in sustaining life. Pupils should acquire an interest in and appreciation of the importance of DNA in cell structure, and why it should be studied. Pupils should be able to overcome any misconceptions identified in the lesson, and form an accurate, scientific understanding of the topics covered in the lesson. Pupils should improve their communication skills through the use of group-work in the lesson Pupils should improve their literacy skills in combining sequences and mastering the spelling of the bases contained in DNA. Subject Matter: Students will learn firstly the basic structure of DNA, double helix shape, containing the four bases adenine (A), cytosine (C), guanine (G), and thymine (T). They will also learn that these bases are combined in a specific sequence,A to T and C to G, and why this sequence is so important in the formation of DNA. They will then learn a more detailed structure of DNA, including nucleotide structure (phosphate, sugar, and nitrogen base), how the nitrogen bases are categorised into purines (adenine and guanine) and pyrimidines (thymine and cytosine). Students will also learn about the hydrogen bonding that occurs between the base pairs, and the significance of the helical shape. Students will also learn about the combinations that these bases can make, creating genetic code, and the implications of this genetic code. Resources: Mini whiteboards, whiteboard markers, activity sheets, Power-point slideshow,coloured Lego, concept cartoons, DNA sweets model materials ( 10 groups – 2 liquorice strands, white marshmallows, pink marshmallows, red gummy bears, green gummy bears, and cocktail sticks), DNA extraction equipment (Kiwi, washing-up liquid (not the concentrated type), blender, distilled water, sharp knife, table salt (3 g), chopping board, protease enzyme e.g. trypsin (1%), coffee filter paper, ethanol at freezer temperature, droppers, water bath (60 °C), spatula, ice-water bath, plastic syringe (10 cm3), 2 beakers (250 cm3), timer, boiling tube, test tube rack, graduated cylinder (100 cm3), retort stand, glass rod, electronic balance, large funnel, weigh boat, glass stirrer, plastic syringe, disposable gloves, thermometer.). Assessment: To assess what the students learn successfully throughout the lesson, I will use a mixture of higher and lower order cognitive questioning, using various levels of Bloom’s taxonomy, at the beginning and end of the lesson. During the lesson there will be hands on activities which will assess both knowledge obtained in the lesson, and develop and assess psychomotor skills. By using activity sheets in conjunction with these practical activities students’ literacy skills will also be assessed. A keyword chart will also be utilised during the lesson as well as a homework assignment of creating a graphic organiser, through these tasks assessment for learning will be addressed to enhance students’ learning. Classroom Management:The main aspect to classroom management in this lesson will be using direct instruction to avoid confusion and disruption during group-work tasks. Also monitoring throughout the tasks by circulating the room will keep students on task, and will allow time for evaluation of students’ progress. As usual, the seats for this class are assigned according to the seating chart drawn up, to avoid disruption due to pairing of certain students. To keep tasks running smoothly, and to help time keeping, an online timer is used to assign time in which each task should be completed. A strike system will also be implemented with the class, so that once three strikes are built up due to bad behaviour during the lesson an extra question is added for homework. Safety Precautions: The main safety precaution for this lesson is to have a tidy bag system, so that every student’s bag is placed beneath their desk so when moving around during tasks no one will trip over them. There is also a risk assessment attached for the experiment carried out as a demonstration at the beginning of the lesson. Time Pupil Activity Teacher Activity References Goal Conception for Set Induction: Common Misconception in relation to Set • The basic structure of DNA – double helix, Induction: • That DNA, in this helical structure, will ladder like structure. • Naming the bases contained in a molecule stay straight and upright, that it won’t of DNA,adenine (A), cytosine (C), guanine coil up around itself and other DNA (G), and thymine (T),and knowing how molecules in order to fit in the nucleus they match up within the molecule A to T of the cell. • That the bases can bond to any other and G to C. that they choose, that they do not follow rules regarding bonding. Set Induction: (50 minutes) Pupils will observe the sample being 5 mins passed around the class in a test tube, and make suggestions as a whole class as to what the sample is, by raising their hands, they will also be guided by questioning as to what it is. What could this substance be? What does it remind you of? Using the sample prepared before the lesson, pass the sample of DNA around the class for observation, without saying what the sample is. Ask questions as to what Once identified as DNA, through class the sample could be. discussion students will identify a way 5 mins to isolate the molecule briefly, as By use of probing students will have an opportunity to questions, as listed carry out this experiment at a later below, get the students lesson. From observing this sample of to draw up their own DNA hopefully the misconception of image of what a DNA DNA being strictly straight in nature as molecule looks like. in diagrams will be overcome. Then students through probing questions will identify their prior knowledge surrounding the structure of DNA, which should mostly consist of a double helix shape, which will be drawn up on the board by the student which suggests it. 15 mins Then students will view a power point presentation going through the basic structure of DNA which should mirror what was suggested from the previous discussion. Students will learn about the bases that make up DNA, adenine (A), cytosine (C), guanine (G), and thymine (T), and then how they match up within the molecule A to T and G to C. Once this By having a hands up to answer questions, a general view of how many student’s feel confident in their prior knowledge is obtained. Engage: By using a tangible example of the DNA sample, student’s interest will be sparked as to why this substance is deemed important. “students are supposed to cultivate scientific patterns of thinking, logical reasoning, curiosity, openness to new ideas and scepticism in the evaluation of claims and arguments.” – (SyhJong, 2007, p.1) Present Power-point slides about the helical structure of DNA, “develop inquiry including the naming abilities through their of the bases, and how own experiences with they match up together conducting to form the rungs of inquiry science the DNA ladder. (NRC, 2000).”– is covered in the Power-point, students Then hand out activity (Morrison and Estes, have the opportunity to answer sheet 1, and explain 2007, p. 1) question which may have arisen. the task of writing a An activity sheet 1 is then handed out matching sequence of Explain: Students’ to each student on which they match DNA in which the are formally the base pairs to various sequences of students must presented with the DNA. When completed these sheets are understand how the information, with the swapped with the person beside them base pairs match up, aim of introducing and is corrected through an answer without the aid of the correct conception of sheet on the Power-point. Power-point slides.Set the topic. a timer through the projector so that Explore: Through students are aware of the activity sheet the time remaining to student’s will have complete the task. the opportunity to Circulate the room as play around with the students complete the pairing of the bases, activity sheet, and then and develop an go through the understanding of the answers. pattern in which the Once this activity is complete, the bases bond. 5 mins students will then listen to teacher Explain the set up of instructions about the following task, the DNA sweet model, building an edible model of DNA and write up chart regarding which sweet represents which section of the DNA Students will then, in pairs, build a structure. model of DNA, using two strands of 20 liquorice as the backbone strand, white Circulate the room as Explore: Student’s mins marshmallows to represent adenine, students carry out the will have the pink marshmallows to represent task, answering any opportunity to create guanine, a red gummy bear to represent questions that arise. their own models of thymine, and a green gummy bear to Also set a timer DNA, thus exploring represent cytosine, using cocktail sticks through the projector the concept of the to represent the bonds between the so that students are structure of the bases. Hopefully overcoming the aware of the time molecule – making misconception that the bases will bind remaining to complete the abstract concrete. to anything other than the allotted base the task. pair. Key Questions for Set Induction: • What could this substance be? • What does it remind you of? • Do you think this is found in all organisms? • Why would this substance be important in organisms? • What function does DNA have? • Could we live without it? • What shape do you think DNA has? • (Once shape is drawn on the board) Why is it that the substance I passed around didn’t look like this? • How could we see that kind of structure then? • Why do those bases need to bind to specific pairs? • If they were to bind to the wrong one what would happen? • So using the materials here (sweets) how could we make a model of this molecule to show other students, or even primary school children? Goal Conception for Development: Common Misconception in relation to • The detailed structure of DNA – development: • Structure of the nucleotides. nucleotides (phosphate, sugar, and nitrogen base), how the nitrogen bases are • Differences between the purines and categorised into purines (adenine and pyrimidines. guanine) and pyrimidines (thymine and • Hydrogen bonding being the only type of cytosine). bonding that occurs in DNA molecules. • Hydrogen bonding that occurs between • Genetic code can be read using a the base pairs, and the significance of the microscope. • Genetic code is only ever found in one helical shape. • Genetic code, and the implications of this sequence, without variation. code. Development: (20 minutes) Using the models students have just Present Power-point Explain:Students’ 5 mins created, they will then view a Power- slides aboutthe are formally point presentation about the detailed detailed structure of presented with the structure of DNA, including the DNA, including the information, with the structure of nucleotides, the presence of structure of aim of introducing hydrogen bonds between base pairs, nucleotides, the correct development while referring to the sweet presence of hydrogen of the topic. models.How the nitrogen bases are bonds between base categorised into purines (adenine and pairs, while referring guanine) and pyrimidines (thymine and to the sweet models. cytosine). 15 Explore: By mins Then by answering probing questions, Ask probing questions allowing time for students will gather any previous about how DNA bases students’ to explore knowledge or knowledge they can now bind together, and if it the different piece together about genetic code – of any significance to combinations that the different combinations of the base pairs the structure of DNA, Lego blocks can leading to different traits. if the sequence is make to represent the Then to develop literacy skills, students always going to be the sequencing of DNA, will combine various colours of Lego same for every human, students will create a blocks and make note of how many if so what are the concrete idea based different combinations they can create, implications (clones). around an abstract and write this number on their Then once these topic. individual mini whiteboards. These questions and whiteboards are then held up once the misconceptions are Elaborate: By online timer runs out for this activity, addressed, Lego explaining and and this will hopefully address the blocks are handed out presenting the misconception that there is only one and then directions are combinations created type of sequence for DNA. given as to how these with their Lego blocks represent bases, pieces, students’ will and how they bind further develop their together in different knowledge sequences to form surrounding this DNA. topic. “generally studentoriented, to working with openended tasks and doing scientific investigations. The aims of these may generally be described as enhancing science learning through stimulating students' interest and excitement.” – (Kind and Kind, 2007,p.26) Key Questions for Development: • What are the names of the nitrogen bases that will make up a nucleotide? • What do I mean when I say a hydrogen bond? • Why isn’t it an oxygen bond? • Find how many combination of Lego you can make • How many were made? • What do you think this represents in terms of DNA? • Why is it that sequences need to vary like this? • What does this lead to? • Are variations in genetic code always a good/bad thing? Conclusion: (10 minutes) 10 mins Students will end the lesson by taking part in a whole class activity involving turn taking at writing on the whiteboard, filling out DNA sequence, and while doing this students will need to use the abbreviation to write the matching base sequence as well as saying the full word in order to familiarise themselves with the pronunciation of the bases contained in Direct the whole class activity of creating the matching DNA sequence on the board by calling on students to come to the board. During this activity any misconceptions or confusing surrounding the topic that show up Evaluate: During this time the teacher can see how the topic is being perceived by the students’ by seeing how they can use the information learned to tackle the questions put to them. DNA. This activity will allow for the will be addressed Elaborate: Students’ students to address any misconceptions, before the end of the will have the and make this abstract notion concrete lesson. opportunity to deepen before finishing the lesson. Similarly the use of a their understanding of Students will also answer concept concept cartoon here the topic area, while cartoons surround the information will address any addressing covered in the lesson using their mini misconceptions, which misconceptions and whiteboards, which will address will be seen by overcoming these possible misconceptions that may arise answers given on the through the use of in the lessons. mini whiteboards. concept cartoons. “Using concept cartoons is one of the ways that reveal students’ existing knowledge and remedying misconceptions about Scientific phenomena.” – (Akamca, Ellez, Hamurcu, 2009, p. 6) Reference List • Akamca, G. O., Ellez, A. M., Hamurcu, H. (2009) ‘Effects of computer aided concept cartoons on learning outcomes’, Science Direct [online], 9 January 2009, p.1-6, available: www.ul.ie/~library, [accessed 21 April 2014]. • Kind, P. M., Kind, V. (2007) 'Creativity in Science Education: Perspectives and Challenges for Developing School Science', Studies in Science Education [online], p.43: 1, 1 — 37, available: DOI: 10.1080/03057260708560225[accessed 21 April 2014]. • Morrison, J. A., Estes, J. C. (2007) ‘Using Scientists and Real-World Scenarios in Professional Development for Middle School Science Teachers’, Journal of Science Teacher Education [online], 17 January 2007, p.18:165–184, available: DOI: 10.1007/s10972-006-9034-3 [accessed 21 April 2014]. • NCCA, (2001) Leaving Certificate Biology Syllabus, Dublin, Ireland: Government of Ireland. • Syh-Jong, J. (2007)'A study of students' construction of science knowledge: talk and writing in a collaborative group',Educational Research [online], 1 March 2007, p.49:1,65 — 81, available: DOI: 10.1080/00131880701200781 [accessed 21 April 2014]. Resources Risk Assessment: Activity Name of Teacher Hazard identified Isolate DNA from a plant tissue Nature of risk Who is at risk Control measure(s) to reduce risk Onion Consumption Washing-up liquid (not the concentrated type) Consumption Blender Laceration Sharp knife Laceration Table salt (3 g) Consumption Protease enzyme e.g. Consumption All present Use only at bench. No running/ walking around the lab with glassware. Verbally warn all students of the nature of risk and monitor all students at all times. Ensure caution when using all equipment in the lab. Insist on the use of gloves at all times. trypsin (1%) Ethanol at freezer temperature Narcotic in large quantity, Highly Flammable vapour, Burns Water bath (60 °C) Flesh Wound Beakers Flesh Wound Boiling tube Flesh Wound Graduated cylinder Flesh Wound Glass rod Flesh Wound Thermometer Additional control measures Personal protective equipment required Waste disposal Emergency action Teacher signature All spills are to be cleaned up immediately using sand where available, and using gloves as an extra precaution White coat, safety glasses, gloves, and appropriate footwear Solutions will be poured down the sink with plenty of water as it is safe to do this with the chemicals used in this experiment. Date- Power-point slides: (Attached) Activity Sheet 1: Find the matching bases for the following: 1) AAATTGCGTCGATGATCGATAGCTGAGGAAG 2) GGCTAGATGCTAGCTAGCTAGATAGATAGCA 3) ACGCTAGCTAGTGATAGGGTTAGGAATTCGC 4) CGTAGCATGCATGCATGCTAGCATGCTAGCG 5) ATGCTGCATGCATACGATGCTGATGACTGAT 6) AAACGATTAGATAGCTATCGATCGCCGCCTA 7) GTCAGTCGATGCATCGATGCATGCTAAGAGG Concept Cartoon: DNA Model Activity: Lego genetic sequence: (https://www.google.ie/search? q=dna+model+using+sweets&source=lnms&tbm=isch&sa=X&ei=OONcUu5BKTY7AbhmYBY&ved=0CAYQ_AUoAQ&biw=1280&bih=894#q=dna+sqeuence+lego&tbm=isch&facrc=_ &imgdii=_&imgrc=qTfWAMjqXgTo2M%253A%3BHTq6Ip_2uQGA7M%3Bhttp%253A%252F%252Fwww.four h.purdue.edu%252Fgame%252Fimages%252FLesson3%252Flego12.gif%3Bhttp%253A%252F%252Fwww.fo ur-h.purdue.edu%252Fgame%252Flesson3.html%3B200%3B247)
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