MAJOR ARTICLE Antimicrobial Resistance among Streptococcus pneumoniae in the United States: Have We Begun to Turn the Corner on Resistance to Certain Antimicrobial Classes? Gary V. Doern, Sandra S. Richter, Ashley Miller, Norma Miller, Cassie Rice, Kristopher Heilmann and Susan Beekmann Department of Pathology, University of Iowa College of Medicine, Iowa City Background. Antimicrobial resistance has emerged as a major problem in Streptococcus pneumoniae in the United States during the past 15 years. This study was undertaken to elucidate the current scope and magnitude of this problem in the United States and to assess resistance trends since 1994–1995. Methods. A total of 1817 S. pneumoniae isolates obtained from patients with community-acquired respiratory tract infections in 44 US medical centers were characterized during the winter of 2002–2003. The activity of 27 antimicrobial agents was assessed. In addition, selected isolates were examined for the presence of mutations in the quinolone-resistance determining regions (QRDRs) of parC and gyrA that resulted in diminished fluoroquinolone activity. The results of this survey were compared with the results of 4 previous surveys conducted in a similar manner since 1994–1995. Results. Overall rates of resistance (defined as the rate of intermediate resistance plus the rate of resistance) were as follows: penicillin, 34.2%; ceftriaxone, 6.9%; erythromycin, 29.5%; clindamycin, 9.4%; tetracycline, 16.2%; and trimethoprim-sulfamethoxazole (TMP-SMX), 31.9%. No resistance was observed with vancomycin, linezolid, or telithromycin; 22.2% of isolates were multidrug resistant; 2.3% of isolates had ciprofloxacin MICs of ⭓4.0 mg/ mL. It was estimated that 21.9% of the isolates in this national collection had mutations in the QRDRs of parC and/or gyrA, with parC only mutations occurring most often (in 21% of all isolates). Trend analysis since 1994– 1995 indicated that rates of resistance to b-lactams, macrolides, tetracyclines, TMP-SMX, and multiple drugs have either plateaued or have begun to decrease. Conversely, fluoroquinolone resistance among S. pneumoniae is becoming more prevalent. Conclusion. It appears that, as fluoroquinolone resistance emerges among S. pneumoniae in the United States, resistance to other antimicrobial classes is becoming less common. Antimicrobial resistance among clinical isolates of Streptococcus pneumoniae in the United States first emerged as a significant problem during the early 1990s [1]. Since then, the prevalence of resistance to b-lactams has increased steadily, with rates of nonsusceptibility to penicillin approaching 35% by 2002 [2–6]. A similar trend has been observed in the United States for multiple non–b-lactam antimicrobial classes, including Received 10 July 2004; accepted 3 March 2005; electronically published 7 June 2005. Reprints or correspondence: Prof. Gary V. Doern, Medical Microbiology Div., Dept. of Pathology, University of Iowa College of Medicine, Iowa City, IA 52242 ([email protected]). Clinical Infectious Diseases 2005; 41:139–48 2005 by the Infectious Diseases Society of America. All rights reserved. 1058-4838/2005/4102-0001$15.00 macrolides, clindamycin, tetracyclines, trimethoprimsulfamethoxazole (TMP-SMX), and chloramphenicol. Current rates of resistance to these agents among S. pneumoniae have been reported to be ∼30% [2], 9%– 10% [3], 15%–17% [4], 30%–40% [5], and 12% [6], respectively. The only class of orally administered antimicrobials that has seemingly escaped the problem of emerging resistance among S. pneumoniae is the fluoroquinolones [2–6]. However, in view of the recent introduction in the United States of oral fluoroquinolone therapy for the management of respiratory tract infections in adults, as well as the increasing use of agents such as levofloxacin (a compound with borderline potency against S. pneumoniae), fluoroquinolone resistance profiles for this pathogen might be expected to change. Antimicrobial Resistance among S. pneumoniae in the US • CID 2005:41 (15 July) • 139 With this in mind, it was of interest to examine the results of a recent national, multicenter surveillance program aimed at defining current antimicrobial resistance rates among S. pneumoniae in the United States. Since 1994–1995, we have maintained a longitudinal, multicenter surveillance program in the United States called the Global Respiratory Antimicrobial Surveillance Project (GRASP). In this study, clinically significant isolates of S. pneumoniae are collected from patients in medical centers throughout the country and are sent to a central laboratory for characterization by means of reference standard methods. This survey was conducted during 5 different winter seasons: 1994–1995, 1997–1998, 1999–2000, 2001–2002, and 2002–2003. The results of the first 4 surveys have been described elsewhere [2, 5, 6]. The results of the 2002–2003 survey are reported herein with comparisons made to the results of surveys conducted during the first 4 survey periods. from their respective manufacturers as laboratory-grade powders. Isolates were tested using Mueller-Hinton broth supplemented with 3% lysed horse blood at a final volume of 100 mL/well, with a final inoculum concentration of ∼5 ⫻ 10 5 cfu/ mL. Microdilution trays were incubated at 35C in ambient air for 22–24 h before the MICs were visually determined. The following quality-control strains were used throughout the study: S. pneumoniae (ATCC 49619) and 3 laboratory strains (I-01253, 01424, and 01590) that were selected to yield onscale MIC values within both the higher and lower concentration ranges of each antibiotic tested. The MIC interpretive criteria of the NCCLS were used to calculate percentages of isolates that were susceptible, intermediately resistant, and resistant to each agent [8]. Characterization of mutations in the quinolone-resistance determining regions (QRDRs) of the parC and gyrA genes was accomplished as described elsewhere [9]. MATERIALS AND METHODS A total of 1817 S. pneumoniae isolates were characterized in the current study. Isolates were collected at one of 45 different medical centers (table 1) between 1 December 2002 and 30 April 2003 and sent to the University of Iowa College of Medicine (Iowa City, IA) for further characterization. Isolates were collected consecutively from unique patients either seen in ambulatory care settings or hospitalized for !48 h. Pneumococcal isolates from the following specimens and media were included in the study: middle ear fluid, sinus aspirates, CSF and other normally sterile body fluids, blood cultures, and conjunctival swabs. In addition, isolates from lower respiratory tract specimens (mostly of sputum and bronchoalveolar lavage) were included, but only if the samples had been judged to be representative on the basis of Gram stain results and if the isolate was considered to be of clinical significance by the submitting laboratory. Isolates were shipped to the referral laboratory via overnight courier on polyester swabs in Amies transport media with charcoal. This transport method permitted recovery of 100% of shipped isolates. Isolates were reidentified as S. pneumoniae on the basis of Gram stain results and colony morphology, results of Optochin susceptibility tests, and sodium deoxycholate solubility. Stock cultures of isolates were prepared in the referral laboratory by means of the Microbank bead system (Pro-Lab Diagnostics) and were stored indefinitely at ⫺70C. MICs of the following 27 antimicrobial agents were determined by the broth microdilution method described by the NCCLS [7]: penicillin, amoxicillin, amoxicillin-clavulanate, cefaclor, cefprozil, cefuroxime axetil, ceftriaxone, cefpodoxime, cefdinir, cefditoren, chloramphenicol, clindamycin, erythromycin, azithromycin, clarithromycin, ciprofloxacin, levofloxacin, gatifloxacin, moxifloxacin, gemifloxacin, tetracycline, TMP-SMX, rifampin, vancomycin, linezolid, telithromycin, and quinupristin-dalfopristin. All antibiotics were received 140 • CID 2005:41 (15 July) • Doern et al. RESULTS The in vitro activities of 27 antimicrobial agents against 1817 isolates of S. pneumoniae examined in this study are summarized in table 2. The overall rate of penicillin resistance (defined as the rate of intermediate resistance plus the rate of resistance) was 34.2% (15.7% of isolates were intermediately resistant, and 18.5% were resistant). Among resistant strains, 208 (11.4%) had penicillin MICs of 2 mg/mL, 97 (5.3%) had MICs of 4 mg/ mL, and the remaining 31 (1.7%) had MICs of 8 mg/mL. Overall rates of resistance to other b-lactams varied between 6.9% (for ceftriaxone) and 33.6% (for cefaclor). In a comparison of antimicrobial MICs for individual isolates, amoxicillin, amoxicillin-clavulanate, and ceftriaxone MICs were generally the same as MICs across the range of penicillin agents; cefuroxime, cefpodoxime, and cefdinir MICs were 2 times higher; the cefprozil MIC was 4 times higher; and the cefaclor MIC was 32 times higher (data not shown). Cefditoren MICs were typically 2–4 times lower than penicillin MICs for individual isolates. The overall rates of resistance to macrolides ranged from 28.7% to 29.5%. Clarithromycin MICs were consistently 2 times lower than erythromycin MICs, which, in turn, were 2 times lower than azithromycin MICs. Among the 536 erythromycinresistant isolates, 371 (69.2%) expressed the efflux phenotype (erythromycin MICs of 0.5–32 mg/mL). All but 2 of these isolates had clindamycin MICs of ⭐2 mg/mL. A total of 165 isolates (30.8%) expressed the macrolide-lincomycin–streptogramin B (MLSB) phenotype (all had erythromycin MICs of ⭓64 mg/mL and clindamycin MICs of ⭓1 mg/mL). All but 3 of these isolates had clindamycin MICs of ⭓4 mg/mL. The overall rates of resistance to tetracycline, TMP-SMX, and chloramphenicol were 16.2%, 31.9%, and 4.7%, respectively. Telithromycin resistance was not observed. Only a single isolate was defined as being nonsusceptible to telithromycin Table 1. Location of and no. of isolates contributed by participants in the Global Respiratory Antimicrobial Surveillance Project, Winter, 2002–2003. Region, medical center Location No. of isolates New England Dartmouth-Hitchcock Medical Center Lebanon, NH Beth Israel Deaconess Medical Center Boston, MA 24 52 Danbury Hospital Danbury, CT 49 Lahey Clinic Burlington, MA 27 Middle Atlantic Columbia-Presbyterian Medical Center New York, NY 50 Temple University Hospital Philadelphia, PA 48 SUNY Upstate Medical University Syracuse, NY 34 Geisinger Medical Center Danville, PA 48 University of Rochester Medical Center Rochester, NY 49 North Shore–LIJ Health System Lake Success, NY 18 South Atlantic Children’s Hospital National Medical Center Washington, DC 5 University of North Carolina Hospital Chapel Hill, NC 50 Dekalb General Hospital Decatur, GA 50 Mt. Sinai Medical Center Miami Beach Miami Beach, FL 15 Carolinas Medical Center Charlotte, NC 49 Veterans Affairs Medical Center (VAMC) Tampa Tampa, FL Baptist Medical Center Jacksonville, FL 1 50 East North Central Cleveland Clinic Foundation Cleveland, OH 54 Children’s Hospital of Wisconsin Milwaukee, WI 34 Henry Ford Hospital Detroit, MI 48 Clarian Health Methodist Hospital Indianapolis, IN 52 Rush-Presbyterian St. Luke’s Medical Center Chicago, IL 36 Evanston Northwestern Healthcare Evanston, IL 27 East South Central University of South Alabama Medical Center Mobile, AL 50 University of Louisville Hospital Louisville, KY 39 University of Alabama at Birmingham Birmingham, AL 37 Mayo Clinic Rochester, MN 49 University of Iowa Hospitals and Clinics Iowa City, IA 42 Barnes-Jewish Hospital St. Louis, MO 49 University of Kansas Medical Center Kansas City, KS 51 Texas Children’s Hospital Houston, TX 49 Parkland Hospital and Health System Dallas, TX 37 University of Texas Health Science Center San Antonio, TX 49 St. Francis Hospital Tulsa, OK 51 University of New Mexico Health Sciences Center Albuquerque, NM 46 Denver Health Medical Center Denver, CO 50 University of Utah ARUP Laboratories Salt Lake City, UT 34 West North Central West South Central Mountain Good Samaritan Medical Center Phoenix, AZ 48 University Medical Center of Southern Nevada Las Vegas, NV 51 Pacific University of California (UC)–San Diego Medical Center San Diego, CA UC–Los Angeles Medical Center Los Angeles, CA 46 8 UC–San Francisco Medical Center San Francisco, CA 44 VAMC Portland Portland, OR 18 University of Washington Medical Center Seattle, WA 49 UC-Irvine Medical Center Irvine, CA 50 Table 2. In vitro activity of 27 antimicrobial agents against 1817 isolates of Streptococcus pneumoniae collected at 44 US medical centers, Winter, 2002–2003. MIC50, mg/mL MIC90, mg/mL Penicillin Amoxicillin 0.03 0.03 2 2 Amoxicillin-clavulanate Cefaclor Cefprozil 0.03 1 0.25 2 ⭓16 16 Cefuroxime axetil Cefpodoxime Cefdinir Cefditoren 0.06 0.06 0.12 0.015 Antimicrobial agent(s) Ceftriaxonea Erythromycin Azithromycin Clarithromycin Clindamycin Telithromycin Tetracycline Chloramphenicol TMP-SMX Rifampin Ciprofloxacin Levofloxacin Gatifloxacin Moxifloxacin Gemifloxacinb Vancomycin Linezolid Quinupristin-dalfopristin NOTE. 4 4 8 0.5 0.03 ⭐0.06 1 16 ⭐0.12 ⭐0.06 ⭐0.03 ⭐0.008 ⭐0.5 2 ⭐0.25 0.06 1 1 0.25 0.12 16 8 0.25 0.25 ⭓32 4 8 0.06 2 1 0.5 0.25 0.03 0.25 1 0.25 0.06 0.5 1 0.5 Intermediately resistant, % of isolates Resistant, % of isolates 15.7 3.2 18.5 5.3 ⭐0.008 to 16 ⭐0.25 to ⭓16 ⭐0.03 to 64 3.7 5.6 3.5 4.6 28.0 19.9 ⭐0.03 ⭐0.015 ⭐0.015 ⭐0.004 2.3 4.1 3.3 NA 21.6 21.0 23.5 NA ⭐0.008 to 16 ⭐0.06 to ⭓256 5.3 0.9 1.6 28.6 ⭐0.12 ⭐0.06 ⭐0.03 ⭐0.008 ⭐0.5 ⭐0.5 ⭐0.25 ⭐0.008 ⭐0.03 ⭐0.03 ⭐0.015 ⭐0.015 1.3 2.1 0.1 0.1 0.6 NA 6.6 0 NA 0.1 0.1 0.3 27.4 26.9 9.3 0 15.6 4.7 25.4 0.2 2.3 0.7 0.7 0.2 MIC range, mg/mL ⭐0.008 to 8 ⭐0.008 to 16 to to to to to to to to to to to to to to to to ⭓64 32 32 4 ⭓256 ⭓256 ⭓128 2 ⭓32 ⭓32 ⭓16 ⭓8 32 32 8 4 ⭐0.004 to 2 0.12–1 0.12–2 0.25–4 0.2 NA NA 0.3 0.2 0 0 0.06 NA, not available; TMP-SMX, trimethoprim-sulfamethoxazole. a The nonmeningeal MIC breakpoints of the NCCLS were used: susceptible, ⭐1 mg/mL; intermediate resistance, 2 mg/mL; and resistance, ⭓4 mg/mL [8]. b A total of 851 isolates were tested for susceptibility to gemifloxacin. (MIC, 2 mg/mL). No resistance to vancomycin or linezolid was recognized. Among the 1817 isolates characterized in this study, 404 (22.2%) were found to be multidrug resistant. Multidrug resistance was defined as intermediate resistance or resistance to penicillin plus intermediate resistance or resistance to at least 2 of the following 4 agents: erythromycin, TMP-SMX, chloramphenicol, and tetracycline. MIC frequency distributions for the 5 fluoroquinolones examined in this study are presented in table 3. Ciprofloxacin and levofloxacin MICs were generally the same for individual isolates. Gatifloxacin was consistently 4 times more active than ciprofloxacin and levofloxacin, moxifloxacin was 8 times more active, and gemifloxacin was 32 times more active. All 5 agents exhibited distinct modal MIC values, as follows: ciprofloxacin and levofloxacin, 1.0 mg/mL; gatifloxacin, 0.25 mg/mL; moxi142 • CID 2005:41 (15 July) • Doern et al. floxacin, 0.12 mg/mL; and gemifloxacin, 0.03 mg/mL. On the basis of current NCCLS interpretive criteria [8], the following percentages of isolates would have been classified as intermediately resistant or resistant to levofloxacin, gatifloxacin, moxifloxacin, and gemifloxacin: 0.8%, 0.7%, 0.5%, and 0.5%, respectively. MIC breakpoints for ciprofloxacin have not been defined by the NCCLS. However, Chen et al. [10] suggested that a single ciprofloxacin MIC breakpoint of ⭓4 mg/mL is a useful phenotypic means for assessing the overall activity of fluoroquinolones against pneumococci. Among the isolates characterized in this study, 2.3% had ciprofloxacin MICs of ⭓4.0 mg/mL. A total of 301 isolates were examined for the presence of mutations in the QRDRs of the genes encoding the C and E subunits of topoisomerase IV (parC and parE) and the genes encoding the A and B subunits of gyrase A (gyrA and gyrB). Table 3. Fluoroquinolone MIC frequency distributions for 1817 Streptococcus pneumoniae isolates recovered at 45 US medical centers, Winter, 2002–2003. No. (cumulative %) of isolates, by MIC in mg/mL Fluoroquinolone ⭐0.03 0.06 Ciprofloxacin 2 (0.1) 1 (0.2) 3 (0.3) 30 (2.0) Levofloxacin 1 (0.1) 0 3 (0.2) 14 (1.0) 0.12 0.25 0.5 1 2 4 8 16 32 190 (12.4) 1064 (71.0) 485 (97.7) 27 (99.2) 5 (99.5) 3 (99.6) 7 (100) 317 (18.4) 1416 (96.4) 52 (99.2) 2 (99.3) 5 (99.6) 6 (99.9) 1 (100) Gatifloxacin 3 (0.2) 9 (0.7) 190 (11.1) 1018 (67.1) 572 (98.6) 13 (99.3) 0 9 (99.8) 3 (100) … … Moxifloxacin 28 (1.5) 258 (15.7) 1328 (88.8) 188 (99.2) 3 (99.3) 2 (99.5) 6 (99.8) 4 (100) … … … 700 (82.3) 141 (98.8) 6 (99.5) 2 (99.8) 1 (99.9) 0 1 (100) … … … … Gemifloxacin a a Data are for 851 isolates. These included all 42 isolates with ciprofloxacin MICs of ⭓4 mg/mL, 176 randomly selected isolates with ciprofloxacin MICs of 2 mg/mL and 79 randomly selected isolates with ciprofloxacin MICs of 1 mg/mL. The results are presented in table 4. Overall rates of resistance to selected antimicrobial agents, sorted according to geographic region, patient age, and source of isolates, are depicted in table 5. Because this 2002–2003 survey represented a continuation of a survey that had been conducted 4 times previously (during the winters of 1994–1995, 1997–1998, 1999–2000, and 2001– 2002), it was of interest to examine antibiotic resistant trends among S. pneumoniae in the United States during the past decade. National rates of resistance to penicillin, erythromycin, tetracycline, TMP-SMX, and multiple drugs for the current study and the 4 previous surveys are presented in figure 1. In addition, the percentage of isolates with ciprofloxacin MICs of ⭓4 mg/mL during the different survey periods is presented. With penicillin, tetracycline, and multiple drugs, resistance rates appeared to peak in 1999–2000 and have leveled off since then. The rate of resistance to TMP-SMX appears to be decreasing, after a peak in 1999–2000. The rates of resistance to macrolides continue to increase. However, since 1999–2000, the rates of increase have slowed. The relative percentage of macrolide-resistant isolates expressing the M (efflux) phenotype versus the high-level MLSB phenotype has remained nearly constant during the 5 survey periods (65.2%–72.2% vs. 25.3%– 32.1%). Furthermore, the macrolide MIC distributions among strains with the M phenotype have also remained essentially unchanged during the 5 survey periods, both when all strains were examined collectively and when systemic pneumococcal isolates were examined separately (unpublished data). For example, the clarithromycin MIC50 and MIC90 values for isolates with the M phenotype were 2–4 and 8–16 mg/mL, respectively, during all 5 survey periods, both when the entire collections and when just systemic isolates were compared. A conspicuously different pattern was noted for fluoroquin- Table 4. Frequency of mutations in the quinolone-resistance determining regions for 1781 Streptococcus pneumoniae isolates recovered at 45 US medical centers, according to ciprofloxacin MICs, Winter, 2002–2003. Ciprofloxacin MIC 0.5 mg/mL No. of isolates tested/ no. recovered (%) No. of isolates, by mutation None parE only No. of isolates with indicated mutation, by gene Any parE parC only gyrA only parC + gyrA 4/190 (2.1) 2 2 2 0 0 0 1 mg/mL 79/1064 (7.4) 23 35 48 Lys137-Asn (18), Gly128-Asp (2), Ser52-Gly and Lys137-Asn (1) 0 0 2 mg/mL 176/485 (36.3) 36 109 132 Lys137-Asn (25), Asp147-Ile (1), Gly128-Asp (1), Glu100-Ala and Lys137-Asn (1), Ser79Phe (1), Ser79-Tyr (1) 4 mg/mL 27/27 (100) 2 10 19 Lys137-Asn (3), Asn91-Asp (2), Asp78-Ala (1), Asp83-Gly (1), Ser79-Phe (4), Ser79-Tyr (2), Ser79-Tyr and Lys137-Asn (1) 8 mg/mL 5/5 (100) 0 1 4 16 mg/mL 3/3 (100) 0 0 2 0 32 mg/mL 7/7 (100) 0 0 6 0 Lys137-Asn (2) Arg95-Cys (1) 0 Ser114-Gly (1), Ser81-Phe (1) Glu85-Ala (1) 0 0 Lys137-Asn + Ser81-Phe (1) 0 Ser79-Phe + Glu85-Lys (2) Ser79-Phe + Ser81-Phe (3), Ser79Phe and Asp83-Tyr + Ser81-Phe (1), Ser79-Phe and Lys137-Asn + Ser81-Phe (2), Ser79-Tyr and Leu130-Phe + Ser81-Phe (1) Antimicrobial Resistance among S. pneumoniae in the US • CID 2005:41 (15 July) • 143 Table 5. Geographic, demographic, and clinical characteristics associated with susceptibility rates, by antimicrobial agent, for 1817 pneumococcal isolates recovered at 45 US medical centers, Winter, 2002–2003. Variable No. of isolates Penicillin Erythromycin Tetracycline Chl TMP-SMX Multiple drugs Cpfx Region New England 152 15.1 and 13.8 2.6 and 20.4 0.7 and 11.2 4.6 5.3 and 18.4 13.2 5.3 Middle Atlantic 247 15.4 and 13.8 0.8 and 24.7 1.2 and 15.4 5.7 2.0 and 23.5 19.8 2.4 South Atlantic 220 16.4 and 24.1 0 and 30.9 0.5 and 10.9 2.7 5.0 and 31.4 25.5 0.9 East North Central 251 16.3 and 19.9 0.4 and 33.1 0.4 and 17.5 6.0 7.6 and 27.5 24.3 4.0 East South Central 126 14.3 and 20.6 0.8 and 40.5 0 and 15.1 5.6 7.1 and 31.0 30.2 0.8 West North Central 191 14.1 and 16.8 1.6 and 27.8 1.1 and 15.2 4.7 8.4 and 17.8 17.3 3.1 West South Central 186 18.3 and 20.4 0.5 and 31.2 0.5 and 15.1 2.2 8.6 and 30.7 26.3 1.1 Mountain 229 15.3 and 18.3 0.9 and 24.9 0 and 15.3 2.6 8.3 and 26.2 20.1 1.3 Pacific 215 15.4 and 18.6 1.4 and 26.5 0.9 and 22.8 8.4 7.4 and 21.9 24.2 1.9 0–5 years 366 18.9 and 27.9 0.8 and 38.5 1.1 and 19.7 3.3 9.0 and 36.5 32.0 0.6 6–20 years 173 17.3 and 19.1 1.2 and 28.3 0.6 and 15.0 6.9 6.9 and 26.0 24.9 3.5 21–64 years 876 14.5 and 15.0 0.8 and 24.7 0.6 and 13.1 4.5 5.4 and 21.5 18.2 2.4 ⭓65 years 399 14.8 and 17.0 1.3 and 28.1 0.3 and 17.5 5.8 6.8 and 23.6 21.3 3.3 473 13.8 and 13.5 0.6 and 22.2 0.4 and 9.3 3.8 5.5 and 21.4 18.4 0.6 53 22.6 and 18.9 1.9 and 35.9 0 and 18.9 3.8 13.2 and 18.9 22.6 3.8 115 9.6 and 33.0 0.9 and 36.5 0 and 21.7 3.5 8.7 and 32.2 31.3 0.9 a Age Site or specimen Blood CSF and/or sterile body fluid Ear Eye 70 20.0 and 5.7 2.9 and 31.4 1.4 and 17.1 1.4 7.1 and 22.9 17.1 1.4 LRT 888 16.7 and 18.8 1.1 and 28.7 0.8 and 16.4 6.1 6.4 and 25.5 21.7 3.2 Sinus 111 18.0 and 27.9 0 and 43.2 0 and 24.3 URT 82 13.4 and 17.1 0 and 25.6 1.2 and 17.1 Other 25 12.0 and 32.0 0 and 28.0 0 and 20.0 3.6 5.4 and 41.4 36.0 4.5 0 9.8 and 19.5 20.7 2.4 0 and 36.0 28.0 0 12.0 NOTE. Data are percentages expressed as either the rate of intermediate resistance and rate of resistance or the overall rate of resistance, unless otherwise indicated. Chl, chloramphenicol; Cpfx, ciprofloxacin; TMP-SMX, trimethoprim-sulfamethoxazole. a Age was unknown for 3 patients. olones. With a ciprofloxacin MIC of ⭓4 mg/mL as an indicator of diminished fluoroquinolone activity, a marked decrease in fluoroquinolone activity appeared to have occurred in the United States sometime during the 2-year period between the winters of 1999–2000 and 2001–2002. This change was sustained through the most recent survey period, the winter of 2002–2003. Another, perhaps more refined means for comparing pneumococci with respect to the effect of fluoroquinolones over time is mutation analysis. On the basis of the results presented in table 5, we estimate that 21.9% of the 2002–2003 collection of S. pneumoniae isolates had mutations in parC (21%), gyrA (0.3%), or both (0.6%). A similar analysis of the isolates evaluated during our 1997–1998 survey yielded an estimated QRDR mutation rate of 4.7% [9]. DISCUSSION The results of this study provide an objective comparison of the activity of various antimicrobial agents against a recent national collection of clinically significant isolates of S. pneumoniae. The overall rates of resistance to b-lactams varied considerably among different agents in this family, from a low of 144 • CID 2005:41 (15 July) • Doern et al. 6.9% for ceftriaxone to a high of 34.2% for penicillin. Variable rates of resistance to b-lactams were primarily the result of the different MIC interpretive criteria used to define S. pneumoniae resistance categories for the various b-lactam agents [8]. As has been reported elsewhere, the incremental effect of increasing penicillin MICs was constant for all agents in the b-lactam family across the entire range of penicillin MICs [11]. The percentages of isolates with penicillin MICs of 2, 4, and 8 mg/ mL were 11.5%, 5.3%, and 1.7%, respectively. No isolates with penicillin MICs of ⭓16 mg/mL were recognized. Overall rates of resistance to macrolides (i.e., clarithromycin, erythromycin, and azithromycin) were essentially the same (28.7%–29.5%), despite the fact that clarithromycin MICs were consistently 2 times lower than erythromycin MICs, which, in turn, were 2 times lower than azithromycin MICs. Rates of resistance to other antimicrobials varied between a high of 31.9% (for TMP-SMX) to no recognized resistance (for vancomycin, linezolid, and telithromycin). Overall, 22.2% of the isolates examined in this study were resistant to penicillin and at least 2 of the following agents: erythromycin, tetracycline, TMP-SMX, and chloramphenicol. These isolates were classified as being multidrug resistant. Figure 1. Rates of resistance to select antimicrobial agents among respiratory tract isolates of Streptococcus pneumoniae in the United States during 5 winters since 1994–1995. erm, ermB positive; I, intermediately resistant; mef, mefA positive; R, resistant; TMP-SMX, trimethoprimsulfamethoxazole. Five fluoroquinolones were examined in this study. As has been elucidated by others elsewhere [12–15], on a weight basis, gemifloxacin was the most active, ciprofloxacin and levofloxacin the least active. A ciprofloxacin MIC of ⭓4 mg/mL has been recommended as a single phenotypic measure of fluoroquinolone activity that can be used to reliably track the changing fluoroquinolone activity profile versus S. pneumoniae [10]. This recommendation is predicated on 2 observations. First, 98%–99% of S. pneumoniae isolates, which constitutes the modal population of organisms with low fluoroquinolone MICs, have ciprofloxacin MICs of ⭐2 mg/mL; therefore, a ciprofloxacin MIC of ⭓4 mg/mL represents a sensitive means for detecting an upward shift in MICs. Second, mutations in the QRDRs of parC and/ or gyrA begin to accumulate at a ciprofloxacin MIC of 4 mg/ mL [10, 16–18]. As is also true with levofloxacin, however, a single ciprofloxacin MIC breakpoint does not necessarily reflect the true prevalence of organisms with fluoroquinolone resistance mutations, because not infrequently, organisms with MICs lower than proposed breakpoints have mutations, especially mutations in the QRDR of parC only [16, 18, 19]. Assessment of the frequency with which resistance mutations occur, therefore, represents the most refined means for tracking changes in fluoroquinolone resistance patterns. In the current study, we estimated that 21.9% of the 1817 isolates examined had mutations in the QRDR of parC and/or gyrA. Among these, only 10 isolates (i.e., 0.6% of the total) had mutations in both parC and gyrA. The overall prevalence of organisms with mutations only in gyrA was estimated to be even lower (i.e., 0.3%). In other words, the vast majority of Antimicrobial Resistance among S. pneumoniae in the US • CID 2005:41 (15 July) • 145 organisms with QRDR mutations (∼382 [21%] of 1817 isolates) had mutations only in parC. Numerous different mutations were recognized in the QRDRs of both parC and gyrA, which raises the following question: what is the relevance of different individual mutations to diminished fluoroquinolone activity? Certain mutations, such as those at the ser79 and asp83 positions of parC and the ser81 and glu85 positions of gyrA, clearly seem to result in diminished fluoroquinolone effect [9, 16, 20–24]. But what is the significance of parC mutations at the lys137, gly128, asp147, and asn91 loci and the gyrA mutations at the arg95 and ser114 positions? If these latter mutations do not contribute to fluoroquinolone “resistance,” then the overall estimated mutation frequency in our study (i.e., 21.9%) may overstate the problem of changing fluoroquinolone activity against S. pneumoniae in the United States. We are left with the empirical observation that isolates of S. pneumoniae harboring these mutations are now recognized far more commonly than they have been in the past in the United States and that this increased prevalence seems to correspond to a period during which fluoroquinolones have come to be used more often in the management of respiratory tract infections. An analysis of resistance rates in the context of various demographic factors revealed several interesting patterns. With the exception of the fluoroquinolones, resistance rates for other agents were typically highest in the southern and southeastern regions of the United States. This has been reported by others and has seemingly been true since the problem of resistance with S. pneumoniae first started to emerge in the United States in the early 1990s [1–6]. With regard to fluoroquinolones, resistance was most often noted in New England and in the East North Central and West North Central regions of the country. Similarly, resistance to agents other than the fluoroquinolones was generally most common among isolates of S. pneumoniae from children ⭐5 years old and from persons with closedspaced infections, such as acute otitis media and rhinosinusitis. By contrast, fluoroquinolone resistance was least common among isolates from young children and from patients with acute otitis media. Because this survey represents a continuation of a longitudinal surveillance program that was started in 1994–1995, it provided us with an opportunity to assess trends in the development of antimicrobial resistance among S. pneumoniae during the past decade. Much to our surprise, such an analysis indicated that rates of resistance to b-lactams and tetracyclines seem to have plateaued in the United States beginning in 1999– 2000 and may even be decreasing. The same was true for the rate of multidrug resistance among S. pneumoniae. There appears to have been a downward trend in the rate of resistance to TMP-SMX during the first 3 years of the new millennium. 146 • CID 2005:41 (15 July) • Doern et al. The increase in the rate of resistance to macrolides has slowed substantially. The only class of orally administered antimicrobials currently relevant to the management of community-acquired respiratory tract infections for which resistance rates seem to be increasing markedly is the fluoroquinolones. With use of a single phenotypic definition of fluoroquinolone effect (i.e., a ciprofloxacin MIC of ⭓4 mg/mL), a conspicuous jump in resistance rates was noted beginning in 2001–2002, with a continuation of this trend 2 years later in 2002–2003. Fluoroquinolone resistance has been clearly documented in the most dominant clonal groups of antimicrobial-resistant S. pneumoniae in the United States, and there is now some evidence demonstrating clonal expansion of these strains [21–23, 25, 26]. As noted above, the actual scope of the problem of fluoroquinolone resistance in S. pneumoniae may be better judged by means of mutation analysis. A high percentage of isolates in the current study (∼21.9%) were estimated to have mutations in the QRDRs of parC and/or gyrA. This represents a mutation rate that is substantially higher than the rate of 4.7% observed in our 1997–1998 study [8]. The vast majority of these isolates had mutations only in the QRDR of parC and, as result, continued to have low MICs of the more potent fluoroquinolones, gatifloxacin, moxifloxacin, and gemifloxacin. These organisms, however, may represent a growing reservoir of pneumococci in nature that are 1 mutation step away from developing highlevel fluoroquinolone resistance as a result of mutations in both parC and gyrA. If we have really begun to turn the corner on S. pneumoniae resistance to agents other than fluoroquinolones in this country, the question can be asked, why? At least 4 possible factors may be involved. Perhaps national, regional, and local campaigns to encourage more-appropriate use of oral antibiotics in community-based practice in patients with acute respiratory tract illnesses are beginning to pay off with a resultant decreased burden of overall antibiotic selective pressure. There is at least some circumstantial evidence that this may be the case [27]. Second, increasing use of pediatric pneumococcal vaccines directed at preventing infections caused by antibiotic-resistant strains may be impacting resistance [28–33]. Third, during the period when resistance rates among S. pneumoniae seemed to level off if not decrease, there was a concomitant decrease in the prevalence of influenza, perhaps as a result of either increased numbers of people being vaccinated with influenza vaccine or increased vaccine efficacy [34, 35]. Viral respiratory tract infections, particularly influenza, result in clear predispositions to secondary bacterial respiratory tract infections. To wit, a lower prevalence of influenza results in fewer bacterial infections, including those caused by S. pneumoniae, which leads in turn to less selective pressure associated with antibiotic use. Finally, we may have unwittingly been the beneficiary of the relatively recent introduction of the fluoroquinolones into the US market specifically for purposes of treating respiratory tract infections in adults. Levofloxacin, the first fluoroquinolone used to treat respiratory infections, was introduced into clinical practice in the United States in 1997. It was followed in 2001– 2002 by gatifloxacin and then moxifloxacin. Levofloxacin, in particular, has become a very popular agent in the United States for the treatment of sinusitis, acute exacerbation of chronic bronchitis, and community-acquired pneumonia. As its popularity has grown, there has been a proportionate decrease in the use of nonfluoroquinolones for treating these infections. In view of the nature of the multidrug-resistant (i.e., coresistance to b-lactams, macrolides, tetracyclines, and/or TMP-SMX) S. pneumoniae with stable endemicity in the United States, decreased use of any of these agents could lead to decreased rates of resistance to all of them. Of course, another potential consequence of increased fluoroquinolone use in the management of respiratory tract infections could be the emergence of fluoroquinolone resistance in S. pneumoniae. On the basis of results of the current study, it now appears that we have entered a period of substantial change with respect to emerging fluoroquinolone resistance in S. pneumoniae in the United States. This is certainly consistent with recent reports of the failure of fluoroquinolone therapy in US patients with pneumococcal respiratory tract infections [36, 37]. This changing profile of activity overlaps a period during which the use of fluoroquinolones to treat respiratory tract infections has increased markedly. Levofloxacin, in particular, has clearly been shown to be associated with the emergence of S. pneumoniae resistance in individual patients [36–39]. It is possible that this relationship is influenced by the borderline potency of levofloxacin against S. pneumoniae. It is obvious that the emergence of resistance in any bacterial pathogen is a multifaceted problem. In the case of S. pneumoniae and the fluoroquinolones, it appears that we are just now beginning to observe change, at least in the United States. At present, given the newness and relatively modest scope of this problem, perhaps there is still an opportunity to forestall the development of an even bigger problem in the future. It is hoped that the results of this study are in some way instructive in this effort. Acknowledgments The authors are grateful to the following individuals for providing the isolates of S. pneumoniae characterized in this study: Joseph D. Schwartzman (Lebanon, NH), Paola C. De Girolami (Boston, MA), Paul Iannini (Danbury, CT), Kim Chapin (Burlington, MA), Phyllis Della-Latta (New York, NY), Allan L. Truant (Philadelphia, PA), Deanna L. Kiska (Syracuse, NY), Paul Bourbeau (Danville, PA), Dwight J. Hardy (Rochester, NY), Christine C. Ginocchio (Lake Success, NY), Joseph M. Campos (Washington, DC), Peter H. Gilligan (Chapel Hill, NC), Robert Jerris (Decatur, GA), Clarisa Suarez (Miami Beach, FL), Stephen Jenkins (Charlotte, NC), Ann Hall (Tampa, FL), Diane C. Halstead (Jacksonville, FL), Gerri Hall (Cleveland, OH), Susan Kehl (Milwaukee, WI), Eileen Burd (Detroit, MI), Gerald Denys (Indianapolis, IN), Mary Hayden (Chicago, IL), Richard Thomson, Jr. (Evanston, IL), Beth Grover (Mobile, AL), James Snyder (Louisville, KY), Ken B. Waites (Birmingham, AL), Franklin R. Cockerill III (Rochester, MN), Joan Hoppe-Bauer (St. Louis, MO), Rebecca Horvath (Kansas City, KS), James Versalovic (Houston, TX), Paul M. Southern, Jr. (Dallas, TX), James H. 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