Plant Physiology Preview. Published on May 15, 2017, as DOI:10.1104/pp.17.00481 1 2 NADPH thioredoxin reductase C and thioredoxins act concertedly in seedling development 3 4 Valle Ojeda1, Juan Manuel Pérez-Ruiz1*, Maricruz González1, Victoria A. Nájera1, 5 Mariam Sahrawy2, Antonio J. Serrato2, Peter Geigenberger3 and Francisco Javier 6 Cejudo1* 7 8 9 1 Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, 41092-Sevilla, Spain; 2 Department of 10 Biochemistry, Cell and Molecular Biology of Plants, Estación Experimental del Zaidín, 11 Consejo 12 Maximilians-Universität München, Department Biologie I, 82152 Martinsried, 13 Germany Superior de Investigaciones Científicas, Granada, Spain; 3 Ludwig- 14 15 *Corresponding authors: 16 Francisco Javier Cejudo ([email protected]) 17 Juan Manuel Pérez-Ruiz ([email protected]) 18 19 Short title: The concerted action of f- and x-type Trxs and NTRC 20 21 One Sentence Summary 22 23 NADPH thioredoxin reductase C plays a pivotal role required for the function of Trxs x and f and is essential for early seedling development. 24 25 Author contributions 26 J.M.P-R. and F.J.C. designed the study. V.O. performed most of the experiments; M.G. 27 and V.A.N. performed microscopy analyses; M.S. and A.J.S. performed FBPase in vitro 28 studies. J.M.P-R., P.G. and F.J.C. analyzed data. F.J.C. wrote the paper. J.M.P-R. and 29 P.G. revised the manuscript. All authors read and approved final manuscript. 30 31 32 33 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Copyright 2017 by the American Society of Plant Biologists 34 Financial support 35 This work was supported by European Regional Development Fund-cofinanced grant 36 (BIO2013-43556-P) from the Spanish Ministry of Innovation and Competiveness 37 (MINECO) and Grant CVI-5919 from Junta de Andalucía, Spain. V.O. was recipient of 38 a pre-doctoral fellowship from MINECO. P.G. gratefully acknowledges support from 39 the Deutsche Forschungsgemeinschaft (SFB-TR175 B02). 40 41 Keywords: Chloroplast, NTRC, Thioredoxin f, Thiredoxin x, Redox regulation, 42 Seedling 43 44 Journal research area: Biochemistry and Metabolism 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 2 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 68 ABSTRACT 69 70 Thiol-dependent redox regulation of enzyme activity plays a central role in the rapid 71 acclimation of chloroplast metabolism to ever fluctuating light availability. This 72 regulatory mechanism relies on ferredoxin (Fdx) reduced by the photosynthetic electron 73 transport chain, which fuels reducing power to thioredoxins (Trxs) via a Fdx-dependent 74 Trx reductase (FTR). In addition, chloroplasts harbour an NADPH-dependent Trx 75 reductase, which has a joint Trx domain at the C-terminus, termed NTRC. Thus, a 76 relevant issue concerning chloroplast function is to establish the relationship between 77 these two redox systems and its impact on plant development. To address this issue we 78 generated Arabidopsis thaliana mutants combining the deficiency of NTRC with those 79 of Trxs f, which participate in metabolic redox regulation, and Trx x, which has 80 antioxidant function. The ntrc-trxf1f2 and, to a lower extent, the ntrc-trxx mutants 81 showed severe growth retarded phenotypes, decreased photosynthesis performance and 82 almost abolished light-dependent reduction of fructose-1,6-bisphosphatase. Moreover, 83 the combined deficiency of both redox systems provokes aberrant chloroplast 84 ultrastructure. Remarkably, both the ntrc-trxf1f2 and the ntrc-trxx mutants showed high 85 mortality at the seedling stage, which was overcome by addition of an exogenous 86 carbon source. Based on these results, we propose that NTRC plays a pivotal role in 87 chloroplast redox regulation, being necessary for the activity of diverse Trxs with 88 unrelated functions. The interaction between the two thiol-redox systems is 89 indispensable to sustain photosynthesis performed by cotyledons chloroplasts, which is 90 essential for early plant development. 91 92 93 94 95 96 97 98 99 100 101 3 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 102 INTRODUCTION 103 104 Photosynthesis is a central feature of chloroplasts allowing the use of light and water for 105 the production of organic material, thus being the primary source of biomass and 106 oxygen in the biosphere. Beside their essential function as factories of metabolic 107 precursors, chloroplasts play also a relevant role harmonizing the growth of the different 108 organs of the plant as well as its acclimation to changing environmental conditions. 109 Therefore, chloroplast biogenesis and function are deeply integrated with plant growth 110 and development (Inaba and Ito-Inaba, 2010; Jarvis and Lopez-Juez, 2013). A classic 111 example of this integration occurs at the seedling stage, when true leaves are generated 112 (Waters and Langdale, 2009; Pogson et al., 2015). To fulfil these functions, chloroplast 113 metabolism needs to rapidly adjust to unpredictable changes of light availability. In this 114 regard, thiol-dependent redox regulation of enzyme activity plays a relevant role 115 (Couturier et al., 2013; Balsera et al., 2014), the disulphide reductase activity of 116 thioredoxins (Trxs) being central for this regulatory mechanism (Meyer et al., 2012; 117 Serrato et al., 2013). 118 Trx-dependent redox regulation is universally found in any kind of organisms 119 from bacteria and yeasts to plants and animals. In heterotrophic organisms and non- 120 photosynthetic compartments of plant cells, the reducing power for Trx reduction is 121 provided by NADPH in a reaction catalysed by an NADPH-dependent Trx reductase 122 (NTR) (Jacquot et al., 2009). In contrast, redox regulation in plant chloroplasts has 123 remarkable specific features. First, these organelles harbour a rather complex set of Trxs 124 (Meyer et al., 2012; Balsera et al., 2014), while in heterotrophic organisms Trx and 125 NTR are encoded by small gene families. Moreover, the source of reducing power for 126 Trx reduction in chloroplasts is not NADPH, as in heterotrophic organisms, but reduced 127 ferredoxin (Fdx), hence chloroplasts are equipped with a Fdx-dependent Trx reductase 128 (FTR) (Schurmann and Buchanan, 2008), which is specific of these organelles. Based 129 on the function of the FTR/Trx redox system, the classic view of redox regulation of 130 chloroplast metabolism states that metabolic pathways such as carbon assimilation by 131 the Calvin-Benson cycle are active during the day due to the reductive activation of 132 enzymes of the cycle, which relies on Fdx reduced by the photosynthetic electron 133 transport chain, thus linking metabolic regulation to light (Michelet et al., 2013; Serrato 134 et al., 2013). 4 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 135 The view of chloroplast redox regulation based on the action of the Fdx- 136 dependent FTR/Trx system was modified after the discovery of a novel type of NTR 137 with a joint Trx domain at the C-terminus, which was termed NTRC (Serrato et al., 138 2004). NTRC is exclusive of organisms that perform oxygenic photosynthesis and 139 shows plastid localization in plants (Kirchsteiger et al., 2012). Moreover, biochemical 140 analyses revealed that NTRC is able to conjugate both NTR and Trx activities to 141 efficiently reduce the H2O2 scavenging enzyme 2-Cys peroxiredoxin (2-Cys Prx) (Moon 142 et al., 2006; Perez-Ruiz et al., 2006; Alkhalfioui et al., 2007). Arabidopsis NTRC 143 knockout mutants show a characteristic phenotype of retarded growth and pale green 144 leaves, this phenotype being more severe under short-day conditions (Perez-Ruiz et al., 145 2006; Lepisto et al., 2009). Based on these results it was initially proposed that NTRC 146 constitutes an NADPH-dependent redox system which might have a complementary 147 function to the Fdx-dependent FTR/Trx system. Further evidence showed the 148 participation of NTRC in redox regulation of enzymes which were previously known to 149 be Trx-regulated. This is the case of ADP-glucose pyrophosphorylase (AGPase), a key 150 enzyme of starch biosynthesis (Michalska et al., 2009; Lepisto et al., 2013), and of 151 enzymes of the chlorophyll biosynthesis pathway (Richter et al., 2013; Perez-Ruiz et al., 152 2014). These results suggest that chloroplast redox regulation depends on the cross-talk 153 of both Fdx/FTR/Trx and NTRC redox systems, hence being more complex than 154 previously anticipated. 155 It was recently reported that a double mutant of Arabidopsis devoid of NTRC 156 and Trx f1, which is the most abundant f-type Trx, shows a very severe growth 157 inhibition phenotype and an almost complete abolishment of light activation of fructose- 158 1,6-bisphosphatase (FBPase), a redox-regulated enzyme of the Calvin-Benson cycle 159 (Thormahlen et al., 2015). Furthermore, the Arabidopsis double mutant deficient in 160 NTRC and FTR displays a lethal phenotype under autotrophic growth conditions 161 (Yoshida and Hisabori, 2016) suggesting that NTRC and the Fdx/FTR/Trx systems act 162 concertedly in redox regulation of common targets in planta. Bifluorescence 163 complementation (BiFC) assays showing that NTRC interacts in vivo with well- 164 established Trx-regulated enzymes (Nikkanen et al., 2016) further supports this notion. 165 The question arising is whether the effect of NTRC is exerted only on Trxs such as 166 those of the f type, which participate in redox regulation of metabolic pathways, or 167 affects the activity of other types of Trxs. To address this issue, we have analysed the 168 genetic interaction of NTRC with two functionally unrelated chloroplast Trxs: f-type, as 5 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 169 representative of Trxs involved in redox regulation of metabolic pathways (Michelet et 170 al., 2013), and x-type, as representative of Trxs involved in antioxidant defence (Collin 171 et al., 2003). The Arabidopsis ntrc-trxx double mutant and the ntrc-trxf1f2 triple mutant 172 were generated. While the Trx-deficient parental lines, trxf1f2 and trxx, showed a 173 visible phenotype similar to the wild type plants when grown under long day conditions, 174 these deficiencies caused a severe growth inhibition phenotype when combined with the 175 lack of NTRC. Moreover, the ntrc-trxx mutant and, to a higher extent, the ntrc-trxf1f2 176 mutant showed a massive mortality at the seedling stage. These results reveal that 177 NTRC is essential for the activity of unrelated Trxs, thus playing a pivotal role in 178 chloroplast redox regulation, which is critical during early stages of plant development. 179 180 RESULTS 181 182 The combined deficiencies of NTRC and f- or x-type Trxs cause severe growth 183 inhibition phenotype and the impairment of light-dependent regulation of FBPase 184 185 In our attempt to establish the function of NTRC in chloroplast redox regulation we 186 have studied the genetic interaction of NTRC with functionally divergent chloroplast 187 Trxs, such as Trxs f and Trx x. Previous results suggesting the concerted action of 188 NTRC and Trx f1 were based on the severe growth retard phenotype of the Arabidopsis 189 ntrc-trxf1 double mutant (Thormahlen et al., 2015). However, this mutant still contains 190 Trx f2 which constitutes approx. 10% of the total content of f-type Trxs in wild type 191 plants (Thormahlen et al., 2013). To avoid any effect of the residual Trx f2 in its 192 relationship with NTRC, we generated the triple mutant ntrc-trxf1f2 devoid of NTRC 193 and Trxs f. In addition, the ntrc mutant was crossed with the trxx single mutant (Pulido 194 et al., 2010) and the ntrc-trxx double mutant was obtained. These lines were effectively 195 knockout mutants as shown by the lack of transcripts of the corresponding genes in each 196 of the mutants as determined by RT-qPCR analyses (Fig. 1A). As previously reported, 197 the Trx-deficient lines trxf1f2 (Naranjo et al., 2016a) and trxx (Pulido et al., 2010) 198 showed a visible phenotype very similar to the wild type plants when grown under long- 199 day photoperiod (Fig. 1B, C), while the ntrc mutant showed growth retard and pale 200 green phenotype (Fig. 1B, C), in agreement with previous results (Serrato et al., 2004; 201 Lepisto et al., 2009). In contrast, the ntrc-trxx mutant, combining the deficiencies of 202 NTRC and Trx x, showed a very severe growth retarded phenotype, which was even 6 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 203 more severe in the case of the ntrc-trxf1f2 triple mutant (Fig. 1B). In line with their 204 phenotypes, the ntrc-trxf1f2 and ntrc-trxx mutants showed significantly lower content of 205 chlorophyll than their respective parent lines (Fig. 1C). It should be noted that despite 206 their severe growth inhibition both the ntrc-trxx and the ntrc-trxf1f2 mutants were able 207 to produce flowers and viable seeds, when grown under long-day photoperiod. 208 Therefore, while the lack of Trxs f or Trx x have little effect on plant phenotype, when 209 these deficiencies are combined with that of NTRC the effects become very severe. 210 To establish the impact of the combined deficiencies of NTRC and Trxs f and x 211 on redox regulation of chloroplast metabolic pathways, we analysed FBPase, a well- 212 established redox regulated enzyme of the Calvin-Benson cycle. First, activity assays 213 showed slightly lower FBPase activity in leaves of the ntrc, trxx and trxf1f2 mutants 214 than in the wild type, while the ntrc-trxx mutant showed lower activity, which was even 215 lower in the ntrc-trxf1f2 mutant (Fig. 2A). It should be taken into account that 216 Arabidopsis contains three isoforms of FBPase, one localized in the cytosol (Cséke and 217 Buchanan, 1980) and two in the chloroplast (Serrato et al., 2009), hence the FBPase 218 activity here determined reflects the contribution of these isoforms. However, only one 219 of the chloroplast-localized FBPase isoforms is redox regulated and Arabidopsis 220 mutants lacking this isoform have a more severe dwarf phenotype than mutants lacking 221 the cytosolic isoform (Rojas-González et al., 2015). Thus, to get more insight into the 222 function of NTRC, Trxs f and Trx x in chloroplast redox regulation we analysed the 223 light-dependent changes of the redox state of the plastid-localized FBPase isoform, 224 which is known to be regulated by Trxs f, not by Trx x (Michelet et al., 2013). As 225 previously reported (Thormählen et al., 2015; Naranjo et al., 2016a), thiol derivatization 226 with the alkylating agent MM(PEG)24 showed that FBPase was fully oxidized in leaves 227 from dark-adapted wild type plants and became reduced upon illumination, the level of 228 reduction being dependent of light intensity (Fig. 2B, C). Light-dependent FBPase 229 reduction was partially impaired in the trxf1f2 mutant and, surprisingly, also in the trxx 230 mutant (Fig. 2B, C). Interestingly, the degree of FBPase photo-reduction was even 231 lower in the ntrc mutant and almost abolished in mutants combining the deficiency of 232 NTRC with those of Trx x or Trxs f (Fig. 2B, C), in agreement with previous studies 233 with ntrc-trxf1 double mutants (Thormählen et al. 2015). Illumination with higher light 234 intensity resulted in a higher level of enzyme reduction though the pattern of FBPase 235 reduction of the different lines was similar to that obtained under growth light (Fig. 2B, 236 C). 7 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 237 These results are surprising since biochemical analyses have shown that FBPase 238 is regulated by Trxs f but not by NTRC (Yoshida and Hisabori, 2016) or Trx x (Collin et 239 al., 2003). Thus, to analyse further the role of these thiol redox systems in the regulation 240 of FBPase, we performed in vitro assays with the purified enzymes. While almost full 241 reduction of FBPase was accomplished with 0.5 μM concentration of either Trx f1 or 242 Trx f2, the concentration of Trx x to obtain a similar level of FBPase reduction was at 243 least ten-fold higher (Fig. 3), which is in contrast with the similar level of impairment of 244 light-dependent FBPase reduction in the trxx and trxf1f2 mutants (Fig. 2B, C). 245 Moreover, NTRC did not show any capacity to reduce FBPase in vitro (Fig. 3) despite 246 the fact that the degree of light-dependent FBPase reduction was greatly decreased in 247 the ntrc mutant (Fig. 2B, C). The severe impairment of light-dependent reduction of 248 FBPase in the ntrc-trxx and ntrc-trxf1f2 mutants demonstrates the concerted action of 249 both NTRC and f- or x-type Trxs on FBPase redox regulation, though these results 250 suggest that NTRC affects FBPase redox regulation by an indirect mechanism. 251 252 The combined deficiencies of NTRC and f- or x-type Trxs affect photosynthetic 253 performance and chloroplast structure 254 255 The effects of the combined deficiencies of NTRC and Trxs f or Trx x on plant 256 growth (Fig. 1) and the activity (Fig. 2A) and redox regulation (Fig. 2B, C) of FBPase 257 suggest that the impairment of these redox regulatory systems affects photosynthesis 258 performance. Previous reports have shown that the deficiency of NTRC, but not of Trxs 259 f or Trx x, provokes enhanced non-photochemical quenching (NPQ) at low light 260 intensity (Naranjo et al., 2016a, b), hence causing a poor efficiency in the utilization of 261 light energy by the ntrc mutant. Thus, as a first step to determine the effect of the 262 combined deficiencies of NTRC and Trxs f or x on photosynthetic performance, we 263 analysed NPQ in the different lines under study. In agreement with previous results, the 264 ntrc mutant showed enhanced NPQ at light intensity as low as 42 μmol quanta m-2 s-1, 265 while NPQ was only slightly enhanced in the trxx and trxf1f2 mutants (Fig. 4A). Similar 266 to the ntrc mutant, ntrc-trxx and ntrc-trxf1f2 plants showed extended NPQ values during 267 the whole illumination period, however, NPQ did not completely decay in the period of 268 darkness as it did in ntrc plants (Fig. 4A), showing that light utilization in ntrc-trxx and 269 ntrc-trxf1f2 mutants was even less efficient than in the ntrc mutant. In line with these 270 results, the photosynthetic electron transport rate (ETR) was also impaired. The 8 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 271 deficiency of NTRC affected the photosynthetic ETR more severely than the deficiency 272 of Trxs x and f (Fig. 4B). Notably, both the ntrc-trxx and ntrc-trxf1f2 mutants showed 273 dramatically reduced photosynthetic ETR at any of the light intensities analysed (Fig. 274 4B). Moreover, the stability of photosystem II (PS II), determined as the Fv/Fm ratio, 275 which was slightly affected in the ntrc and the trxx mutant, was also severely affected in 276 the mutants combining the deficiencies of NTRC with those of x or f type Trxs (Table 277 I). Finally, the net rate of CO2 fixation (AN) at growth light intensity (125 μE m-2 s-1), 278 which was lower in the ntrc mutant but unaffected in the trxx and trxf1f2 mutants, as 279 compared with the wild type, showed negative values in the ntrc-trxx and ntrc-trxf1f2 280 mutants (Fig. 4C), hence indicating that the rates of respiration and photorespiration 281 were higher than the rate of CO2 fixation in these plants. Moreover, the severe 282 impairment of photosynthetic performance in mutants simultaneously devoid of NTRC 283 and f- or x-type Trxs has a wider effect on chloroplast metabolism as shown by the 284 content of starch, which was also severely decreased in these mutants (Table I). 285 Therefore, these results show that the simultaneous deficiency of NTRC and Trxs f or x 286 has a severe effect on photosynthesis performance, in line with the severe growth 287 inhibition phenotype of these mutants. 288 Such a defective photosynthetic performance of the ntrc-trxx and ntrc-trxf1f2 289 mutants suggested as well alterations in chloroplast morphology. To test this possibility, 290 the chloroplast structure in the different lines under study were analysed by 291 transmission electron microscopy. The ntrc mutant contains chloroplasts with different 292 levels of ultrastructural alterations, as previously reported (Perez-Ruiz et al., 2006; 293 Lepisto et al., 2009), while chloroplasts in the trxx and trxf1f2 mutants showed similar 294 morphology to those in the wild-type (Fig. 5). In contrast, the ntrc-trxx and, to a higher 295 extent, the ntrc-trxf1f2 mutants showed heterogeneous chloroplast ultrastructure, with a 296 number of chloroplasts showing clear alterations (Fig. 5). The most remarkable 297 characteristic of chloroplasts from both the ntrc-trxx and the ntrc-trxf1f2 mutants was 298 the increased number and size of plastoglobules (Fig. 5), which is indicative of 299 oxidative stress and senescence (Austin et al., 2006). 300 As an additional approach to determine the effect of the combined deficiencies 301 of NTRC and Trxs f or Trx x on chloroplast function, selected proteins indicative of the 302 different chloroplast compartments were analysed by Western blot. The ntrc-trxx and 303 ntrc-trxf1f2 mutants showed decreased levels of D1, a core component of PSII, PsaC, a 304 core component of PSI, lhca1, a component of PSI antenna, and the α and γ subunits of 9 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 305 the ATPase (Fig. 6). However, no significant differences in the content of lhcb1, a 306 component of the PSII antenna, and the stromal Rubisco large subunit was detected 307 (Fig. 6). Altogether, these results show that the combined deficiency of NTRC and x- or 308 f-type Trxs affect chloroplast structure and key components of the chloroplast 309 photosynthetic electron transport chain, which is in agreement with the low 310 photosynthetic performance and severe growth retarded phenotype of these plants. The 311 increased number and size of plastoglobules in these chloroplasts suggest that the 312 deficiency of the redox regulatory network of these organelles cause oxidative stress. 313 314 The combined deficiencies of NTRC and f- or x-type Trxs cause high mortality at 315 the seedling stage 316 317 A remarkable feature of the ntrc-trxx and the ntrc-trxf1f2 mutants was the low 318 number of individuals that reached the adult phase, indicating that the combined 319 deficiency of these plastidial redox systems might be critical at early developmental 320 stages. To investigate this possibility we analysed embryonic (seed germination) and 321 postembryonic (production of roots and true leaves) growth and development. Of the 322 Arabidopsis lines under study only the ntrc-trxf1f2 triple mutant showed decreased seed 323 germination capacity (Fig. S1). At 5 days after germination (dag), all lines had produced 324 cotyledons, though these were slightly smaller and showed paler green colour in the 325 case of the ntrc-trxf1f2 mutant (Fig. 7A). At a later stage, 8 dag, seedlings of the wild 326 type, as well as those of the ntrc, trxf1f2 and trxx mutants produced true leaves, a 327 process that was delayed in the ntrc-trxx and, to a higher extent, in the ntrc-trxf1f2 328 mutants (Fig. 7A, B). This delay was coincident with a sharp decrease of seedling 329 viability in the case of the ntrc-trxf1f2 triple mutant, so that up to 95% of the seedlings 330 of this line did not reach this stage of development (Fig. 7A, C). Though not as 331 dramatic, the ntrc-trxx double mutant also showed a high decrease of viability at this 332 stage of development (Fig. 7A, C). Seedlings of the ntrc-trxx and ntrc-trxf1f2 mutants 333 that survived the true leaf stage were able to continue development though with 334 impaired growth rate, which was more severe for the ntrc-trxf1f2 triple mutant, as 335 shown above (Fig. 1B). 336 The high mortality of the ntrc-trxx and the ntrc-trxf1f2 mutants at the transition 337 of seedling to true leaves suggests that photosynthesis performed by cotyledons 338 chloroplasts is critical for the development of vegetative organs. However, these assays 10 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 339 were performed in soil and, thus, the nutritional conditions could not be strictly 340 controlled. Therefore, we analysed in more detail the contribution of photosynthesis in 341 cotyledons to seedling development. To this end, the generation of roots as a sink organ 342 was studied in synthetic medium supplemented or not with sucrose under continuous 343 light. Like the wild type, seedlings of the ntrc, trxx and trxf1f2 mutants produced roots 344 regardless of the presence of sucrose in the medium (Fig. 8A-C). In contrast, root 345 formation was completely abolished or severely impaired in seedlings of the ntrc-trxf1f2 346 and ntrc-trxx mutants, respectively (Fig. 8A, B). Root elongation was restored by the 347 addition of external sucrose, though the rate of root growth was still decreased in the 348 ntrc-trxx and ntrc-trxf1f2 mutants, as compared to the other lines under analysis (Fig. 349 8A, C). These results show the relevance of redox regulation in the photosynthetic 350 activity of cotyledons chloroplasts for early plant development. 351 352 DISCUSSION 353 354 NTRC acts concertedly with different types of Trxs to sustain chloroplast function 355 356 Chloroplasts play important roles in plant metabolism and development. A key 357 component of the rapid adjustment of chloroplast metabolism to ever fluctuating light 358 conditions is redox regulation of enzyme activity, which relies on two thiol redox 359 systems, the NADPH-dependent NTRC and the Fdx-dependent FTR/Trx pathways 360 (Spinola et al., 2008; Cejudo et al., 2012). Thus, a central issue to understand 361 chloroplast redox regulation is to establish the functional relationship between these two 362 redox systems and the relevance of chloroplast redox regulation to plant development. 363 In this work we have addressed this issue by performing a comparative analysis of 364 Arabidopsis mutants combining the deficiency of NTRC with that of two Trxs 365 previously proposed to have unrelated functions such as Trxs f, which participate in 366 redox regulation of metabolic pathways (Michelet et al., 2013), and Trx x, which was 367 proposed to have antioxidant function (Collin et al., 2003). Based on our results we 368 propose that NTRC exerts a pivotal role in chloroplast redox regulation. Moreover, the 369 high mortality of the ntrc-trxx and, to a higher extent, the ntrc-trxf1f2 seedlings 370 uncovers the essential function of cotyledon chloroplast redox regulation for early 371 stages of plant development. 11 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 372 Chloroplasts harbour a complex set of different Trxs (Meyer et al., 2012; Balsera 373 et al., 2014). Based on extensive biochemical analyses it was established that Trxs of 374 the types m and f are relevant in redox regulation of metabolic pathways (Buchanan and 375 Balmer, 2005; Michelet et al., 2013; Okegawa and Motohashi, 2015), while those of the 376 types x and y were proposed to perform antioxidant activity (Collin et al., 2003; Collin 377 et al., 2004). However, despite the major function proposed for Trxs f in redox 378 regulation of central metabolic pathways such as the Calvin-Benson cycle, Arabidopsis 379 mutants devoid of Trx f1 (Thormahlen et al., 2013) or Trx f1 and f2 (Yoshida et al., 380 2015; Naranjo et al., 2016a) show a visible phenotype very similar to that of the wild 381 type, and so does an Arabidopsis mutant devoid of Trx x (Pulido et al., 2010). These 382 results indicate that alternative redox systems, either additional chloroplast Trxs or 383 NTRC, might compensate for the deficiency of these Trxs. In contrast, when the 384 deficiency of Trx f1 (Thormahlen et al., 2015), Trxs f1 and f2 or Trx x is combined with 385 the deficiency of NTRC a dramatic effect on plant phenotype is produced (Fig. 1B, C). 386 As previously reported (Thormahlen et al., 2015; Naranjo et al., 2016a, b), the 387 deficiency of NTRC causes more severe impairment on photosynthesis performance 388 than the deficiency of type f Trxs, as shown by the extensive NPQ at low light intensity, 389 the lower photosynthetic ETR and the rate of carbon fixation (Fig. 4A-C) in the ntrc 390 mutant. Remarkably, these parameters were dramatically affected in both the ntrc-trxx 391 and the ntrc-trxf1f2 mutants, thus showing the poor efficiency of light energy utilization 392 by these mutants, which has a wide effect on chloroplast metabolism as indicated by the 393 lower content of starch in these mutants (Table I). 394 The above discussed results provide an explanation for the severe growth 395 inhibition phenotype of the ntrc-trxx and the ntrc-trxf1f2 mutants and suggest the 396 concerted action of both systems in the redox regulation of common targets in vivo, a 397 notion further supported by the finding that NTRC interacts with well-established Trx 398 targets (Nikkanen et al., 2016). Indeed, NTRC has been shown to participate in the 399 regulation of enzymes such as AGPase (Michalska et al., 2009), and different enzymes 400 of the pathway of tetrapyrrole synthesis (Richter et al., 2013; Perez-Ruiz et al., 2014; 401 Yoshida and Hisabori, 2016), which were previously identified as Trx-regulated 402 (Ballicora et al., 2000; Geigenberger et al., 2005; Ikegami et al., 2007). Here we have 403 addressed this issue by analysing FBPase, a well-established redox regulated enzyme of 404 the Calvin-Benson cycle. The impairment of redox regulation caused by the combined 405 deficiencies of NTRC and Trxs f or x affected FBPase as shown by the lower level of 12 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 406 activity of this enzyme in leaves of the ntrc-trxx and the ntrc-trxf1f2 mutants (Fig. 2A). 407 Interestingly, the in-vivo level of FBPase reduction in response to light was lower in the 408 ntrc than in the trxf1f2 and trxx mutants (Fig. 2B). However, in vitro assays showed that 409 Trxs f1 and f2 are more efficient reductants of FBPase than Trx x, while NTRC is 410 unable to reduce the enzyme (Fig. 3). These results strongly support the notion that the 411 in vivo effect of NTRC on redox regulation of FBPase is indirect. The deficiency of 412 NTRC may cause an imbalance of the redox state of the chloroplast, which in turn 413 affects the regulatory function of Trxs f with respect of its targets. 414 Trxs f and x interact with different targets (Collin et al., 2003; Yoshida et al., 415 2015) and, hence, are considered to have different functions in chloroplast redox 416 regulation (Meyer et al., 2012). Thus, an additional issue addressed in this work was to 417 establish whether NTRC is specifically required for the activity of Trxs involved in 418 regulation of metabolic pathways such as Trxs f, or is also required for Trxs involved in 419 antioxidant defence such as Trx x. The trxx mutant shows a phenotype indistinguishable 420 of the wild type plants (Pulido et al., 2010), whereas the ntrc-trxx double mutant shows 421 a severe growth retarded phenotype (Fig. 1B, C) and impairment of photosynthetic 422 performance (Fig. 4A-C and Table I), thus indicating that the function of Trx x is 423 dispensable in plants containing NTRC, but is not properly exerted in the absence of 424 NTRC. It should be noted that the level of light-dependent FBPase reduction was 425 similarly affected in the trxx and the trxf1f2 mutants (Fig. 2B, C). However, Trxs f, 426 which are about four-fold more abundant than Trx x in Arabidopsis chloroplasts 427 (Okegawa and Motohashi, 2015), are more efficient reductants of FBPase in vitro than 428 Trx x (Fig. 3). The phenotype of the ntrc-trxf1f2 mutant is more severe than that of the 429 ntrc-trxx mutant either at the stage of adult plant (Fig. 1B), seed germination capacity 430 (Fig. S1), or seedling viability (Fig. 7A-C), suggesting that the functions of Trxs f are 431 more relevant for plant growth than those of Trx x. 432 The deficiency of the redox regulatory network in the ntrc-trxx and ntrc-trxf1f2 433 mutants has a dramatic impact on photosynthetic performance as shown by the high 434 levels of NPQ at low light intensities (Fig. 4A), the corresponding decrease of the 435 photosynthetic ETR (Fig. 4B), PSII activity based on the Fv/Fm ratio (Table I) and the 436 rate of net photosynthesis (Fig. 4C). Previous reports have shown that the deficiency of 437 NTRC causes the impairment of light utilization and slightly affects the redox state of 438 the γ subunit of ATPase, hence affecting the qE component of NPQ (Carrillo et al., 439 2016; Naranjo et al., 2016b). Therefore, the combined deficiency of NTRC and f- or x13 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 440 type Trxs affects the redox regulation of chloroplast metabolic pathways such as the 441 Calvin-Benson cycle but also the efficiency of light utilization, which ultimately might 442 be the reason of the severe growth retard phenotype shown by the ntrc-trxx and the ntrc- 443 trxf1f2 mutants. These results reveal the pivotal role of NTRC in the thiol redox 444 network of the chloroplast stroma integrating the feedback control of photochemical 445 reactions and regulation of metabolic pathways. Moreover, a combined deficiency in 446 NADPH and Fdx dependent chloroplast redox networks has severe effects on the 447 structure of these organelles as shown by the presence of chloroplasts with aberrant 448 ultrastructure in both the ntrc-trxx and the ntrc-trxf1f2 mutants (Fig. 5), and the lower 449 content of representative components of PSI, PSII and ATPase (Fig. 6). 450 Therefore, the severe growth phenotype of the ntrc-trxx and ntrc-trxf1f2 mutants 451 is the result of the effect of these mutations on a wide variety of chloroplast processes 452 from photochemical reactions to carbon metabolism. Our results indicate that the 453 regulation of these processes is coordinated and that NTRC exerts a central function in 454 this coordination. The question arising is the mechanistic basis of this central function 455 of NTRC in chloroplast redox regulation. A possibility is that the lower efficiency of 456 light energy utilization caused by the lack of NTRC (Fig. 4A-C) affects the availability 457 of reducing equivalents for Trxs, hence impairing the light-dependent redox regulation 458 of Calvin-Benson enzymes such as FBPase. This would provide an explanation for the 459 lower level of reduction of FBPase in NTRC-deficient plants (Fig. 2A-C) despite the 460 fact that NTRC is unable to reduce FBPase in vitro (Fig. 3). An additional aspect to be 461 taken into account is that the deficiency of NTRC may perturb chloroplast redox 462 balance affecting the Trx activity. In this regard, it should be noted that the chloroplasts 463 of the ntrc-trxx and ntrc-trxf1f2 mutants show higher number and size of plastoglobules 464 (Fig. 5), which are indicative of oxidative stress (Austin et al., 2006), hence suggesting 465 that the severe alteration of the redox regulatory network in these mutants has also 466 important effects on the antioxidant machinery of the chloroplast. Indeed, NTRC is an 467 efficient reductant of the peroxide scavenging enzyme 2-Cys Prx (Pérez-Ruiz et al., 468 2006; Pulido et al., 2010). 469 470 Photosynthetic activity of cotyledon chloroplasts is essential for early plant 471 development 472 14 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 473 Most studies on chloroplast redox regulation have been performed at the adult 474 plant stage, hence when leaves are fully developed. However, beside the severe growth 475 inhibition of the ntrc-trxx and ntrc-trxf1f2 mutants (Fig. 1B, C), a remarkable feature of 476 the phenotype of these mutants was the low number of individuals that reached the adult 477 phase (Fig. 7A-C), suggesting that the photosynthetic function becomes critical at 478 earlier stages of plant development. It is known that embryonic photosynthesis affects 479 seed vigour (Allorent et al., 2015), thus, the lower germination capacity of seeds of the 480 ntrc-trxf1f2 (Fig. S1) suggests the relevance of plastid redox regulation in seed 481 germination. It should be noted that the ntrc-trxx mutant shows germination capacity 482 similar to those of the wild type (Fig. S1), which is in line with the other phenotypic 483 parameters here analysed, most of them being more affected in the ntrc-trxf1f2 mutant 484 than in the ntrc-trxx mutant. 485 A critical stage in the plant life cycle occurs after seed germination when the 486 growing seedling depends on the heterotrophic use of seed storage compounds until 487 autotrophic growth is possible (Kircher and Schopfer, 2012). Once germinated, the 488 cotyledons of the ntrc-trxx and the ntrc-trxf1f2 mutants were slightly smaller and 489 showed yellowish green colour, as compared with cotyledons from wild type, ntrc, trxx 490 or trxf1f2 mutants (Fig. 7A). This indicates that the developmental program of 491 photomorphogenesis is not compromised by the impairment of chloroplast redox 492 regulation at this early stage of development. This notion was further supported by 493 growth tests in synthetic medium supplemented or not with sucrose (Fig. 8A). In 494 contrast with the wild type and the ntrc, trxx and trxf1f2 mutants, which produced roots 495 in the absence of sucrose, root production was severely defective in the ntrc-trxx 496 mutant, and completely abolished in the ntrc-trxf1f2 mutant unless sucrose was added to 497 the medium to compensate for decreased photosynthesis (Fig. 8A-C). These results 498 provide further evidence showing that the impairment of redox regulation caused by the 499 combined deficiency in NTRC and Trxs f or Trx x severely affects photosynthetic 500 performance of cotyledons chloroplasts. However, while in adult plants this failure 501 causes growth retardation but is not lethal, in the case of cotyledons it produces the 502 delay in the generation of new organs such as roots and true leaves, which provokes 503 increased seedling mortality (Fig. 7A-C). Photomorphogenesis, the reprograming of the 504 seedling growth promoted by light, has received much attention and a complex set of 505 light perception and signalling components have been identified (Huang et al., 2014; 506 Wu, 2014; Pogson et al., 2015). Less attention has been given to the contribution of 15 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 507 photosynthesis to this developmental process. The reduced viability of the ntrc-trxx and, 508 to a higher extent, the ntrc-trxf1f2 seedlings uncovers the essential function of redox 509 regulation of photosynthesis at this developmental stage. 510 EXPERIMENTAL PROCEDURES 511 512 Biological material and growth conditions 513 Arabidopsis thaliana wild type (ecotype Columbia) and mutant plants were 514 routinely grown in soil in growth chambers under long-day (16-h light/8-h darkness) 515 conditions at 22ºC during the light and 20ºC during the dark periods and a light intensity 516 of 125 µE m-2 s-1. For in vitro culture experiments, seeds were surface sterilized using 517 chlorine gas for 16 h, plated on Murashige and Skoog (MS) medium (DUCHEFA), pH 518 5.8 containing 0.35% Gelrite (DUCHEFA) in the presence or absence of 0.5% (w/v) 519 sucrose and stratified at 4ºC for 2 to 3 days. Mutant plants ntrc, trxx and trxf1f2 were 520 described previously (Serrato et al., 2004; Pulido et al., 2010; Naranjo et al., 2016a) 521 (Supplemental Table S1). The single ntrc mutant was manually crossed with the single 522 trxx mutant and the double trxf1f2 mutant. Seeds resulting from these crosses were 523 checked for heterozygosity of the T-DNA insertions in the NTRC, TRX x, TRX f1 and 524 TRX f2 genes, respectively. Plants were then self-pollinized and the ntrc-trxx and ntrc- 525 trxf1f2 mutants were identified in the progeny by PCR analysis of genomic DNA. 526 Primer sequences for PCR are listed in Supplemental Table S2. 527 528 RNA extraction and RT-qPCR analysis 529 530 Total RNA was extracted using Trizol reagent (Invitrogen). cDNA synthesis was 531 performed with 2 µg of total RNA using the Maxima first-strand cDNA synthesis kit 532 (Fermentas) according to manufacturer’s instructions. Real-time quantitative PCR (RT- 533 qPCR) was performed using an IQ5 real-time PCR detection system (Bio-Rad). A 534 standard thermal profile (95 °C, 3 min; 40 cycles at 95 °C for 10 s, and 60 °C for 30 s) 535 was used for all reactions. After the PCR, a melting curve analysis (55–94 °C at 0.5 536 °C/30 s) was performed to confirm the specificity of the amplicon and to exclude 537 primer-dimers or non-specific amplification. Oligonucleotides used for RT-qPCR 538 analyses are listed in Supplementary Table S3. Expression levels were normalized using 539 two reference genes: ACTIN and AT5G25760 (Czechowski et al., 2005). 540 16 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 541 Protein extraction, FBPase activity, alkylation assays and Western blot analysis 542 543 Plant tissues were ground with a mortar and pestle under liquid nitrogen. FBPase 544 activity was determined as previously reported (Rojas-González et al., 2015) from 545 leaves of plants grown for 4 weeks under long-day photoperiod and harvested at 12 h of 546 the day period. For the determination of the redox state of thiol-regulated enzymes in 547 vivo, alkylation assays using methyl-maleimide polyethylene glycol (MM(PEG)24, 548 Thermo Scientific) were performed as described previously (Naranjo et al., 2016a). To 549 study chloroplast protein levels, the Minute Chloroplast Isolation Kit (Invent 550 Biotechnologies) was used following the manufacturer’s instructions. Intact chloroplasts 551 were isolated from leaves of plants adapted to the dark during 30 min and total protein 552 content was quantified using the Bradford reagent (BIO-RAD). 553 Protein samples were subjected to SDS-PAGE under reducing or non-reducing 554 conditions using various acrylamide gel concentrations, as stated in the figure legends, 555 and transferred onto nitrocellulose membranes, which were probed with the indicated 556 antibody. Specific anti-NTRC antibodies were previously raised in our laboratory 557 (Serrato et al., 2004). Other antibodies (D1, lhcb1, PsaC, lhca1, α-ATPase, γ-ATPase, 558 RBC-L) were purchased from Agrisera (Sweden). 559 560 In vitro FBPase reduction assay 561 562 Arabidopsis chloroplast FBPase (2.5 μM) was incubated for 30 min at 22ºC with 563 increasing concentration (0-10 μM) of NTRC, Trxs f1 and f2 or Trx x in reaction 564 mixtures containing 100 mM Tris-HCl pH 8.0 and 0.1 mM DTT. In order to prevent 565 further oxidations, free thiol were alkylated by incubation in the dark for 30 min at 37 566 ºC in the presence of equals volumes of a solution containing 60 mM iodoacetamide 567 (IAM), 2% CHAPS and 100 mM Tris-HCl pH 8.0. 568 569 Determination of chlorophylls, starch and FBPase activity 570 571 Leaf discs were weighed and frozen in liquid nitrogen. After extraction in 1 mL 572 methanol for 16 h at 4 °C, chlorophyll levels were measured spectrophotometrically, as 573 described in Porra et al. (1989), and normalized to fresh weight. Starch contents were 574 determined as previously reported (Rojas-González et al., 2015) from rosette leaves of 17 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 575 plants grown for 4 weeks under long-day photoperiod and harvested at 12 h of the day 576 period. 577 578 Measurements of chlorophyll a fluorescence and rate of carbon assimilation (AN) 579 580 Room temperature chlorophyll fluorescence was measured using a pulse- 581 amplitude modulation fluorimeter (DUAL-PAM-100, Walz, Effeltrich, Germany). The 582 maximum quantum yield of PSII was assayed after incubation of plants in the dark for 583 30 min by calculating the ratio of the variable fluorescence, Fv, to maximal 584 fluorescence, Fm (Fv/Fm). Induction-recovery curves were performed using red (635 nm) 585 actinic light at 42 μE m−2 s−1 for 8 min. Saturating pulses of red light at 10000 μE m−2 586 s−1 intensity and 0.6 s duration were applied every 60 s and recovery in darkness was 587 recorded for up to 10 min. The parameters Y(II) and Y(NPQ) corresponding to the 588 respective quantum yields of PSII photochemistry and non-photochemical quenching 589 (NPQ) were calculated by the DUAL-PAM-100 software according to the equations in 590 (Kramer et al., 2004). Relative linear electron transport rates were measured in leaves of 591 pre-illuminated plants by applying stepwise increasing actinic light intensities up to 592 2000 μE m−2 s−1. 593 Net CO2 assimilation rate (AN) was measured in leaves from wild type and 594 mutant plants grown under long-day conditions for 4 weeks using an open gas exchange 595 system Li-6400 equipped with the chamber head (Li-6400–40). Leaves were dark- 596 adapted and then illuminated with photosynthetically active radiation (PAR) of 125 μE 597 m−2 s−1 until the rate of CO2 assimilation was stabilised. Six leaves were measured per 598 line. Measurements were performed by the Service for Photosynthesis, Instituto de 599 Recursos Naturales y Agrobiología, Sevilla (Spain). 600 601 Determination of seedling development and survival 602 603 The growth and development of the lines under study were monitored based on 604 two parameters: the formation of true (post-embryonic) leaves and seedling mortality. 605 For each line, three sets of at least 60 seeds were sown on soil and grown during 28 606 days under long-day conditions. Seedling survival and true leaves generation were 607 scored at 3-4 days intervals. Seedlings that were still green/greenish, considered as 18 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 608 survivors, were quantified to calculate the survival rate. Seedlings that exhibit true 609 leaves were quantified to determine the rate of seedlings reaching the true leaf stage. 610 611 Root growth and germination capacity measurements 612 613 For root growth assays, at least 30 seedlings were grown for 7 days on vertically 614 oriented MS plates in the presence or absence of 0.5% (w/v) sucrose. Root elongation 615 was scored at 1 day intervals from day 3 until day 7. 616 For germination studies, five sets of at least 100 seeds were sown on 617 horizontally oriented MS plates and the percentage of germinated seeds was recorded at 618 day 2 and day 7. 619 620 Transmission electron microscopy analysis 621 622 Fully expanded leaves from plants cultured under long day photoperiod were 623 collected at bolting time, approx. after 28 days of growth, just when the first floral bud 624 was visible. Since growth of ntrc-trxx and ntrc-trxf1f2 plants is delayed, the leaves of 625 these mutants were collected after approx. 60 days of growth. Small pieces (2 mm2) of 626 leaves were cut with a razor blade and immediately fixed in 4% glutaraldehyde in 0.1 M 627 Na-cacodylate buffer, pH 7.4 (3 h at 4 ºC, under vacuum). After fixation, samples were 628 rinsed three times for 30 min at 4 ºC with the same buffer. Samples were post-fixed in 629 1% osmium tetraoxide in cacodilate buffer (0.1 M, pH 7.4) for 1 h at 4 ºC. After 630 washing, samples were immersed in 2% uranyl acetate, dehydrated through a gradient 631 acetone series (50, 70, 90, 100%) and embedded in Spurr resin. Semi-thin sections (300 632 nm thickness) were obtained with a glass knife and stained with 1% toluidine blue for 633 cell localization and reorientation using a conventional optic microscope. Once a 634 suitable block face of the selected area was trimmed, several ultrathin sections (70 nm) 635 were obtained using an ultramicrotome (Leica UC7) equipped with diamond knife 636 (Diatome) and collected on 200 mesh cupper grids. Sections were examined in a Zeiss 637 Libra 120 transmission electron microscope and a digitized (2048 x 2048 x 16 bits) 638 using an on axis-mounted TRS camera. Sample post-fixation and cutting were 639 performed by the Microscopy Service at the Centro de Investigación, Tecnología e 640 Innovación (CITIUS) from the University of Seville. 641 19 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 642 643 644 645 646 Table I. Effect of the combined deficiencies of NTRC and Trxs f or Trx x on PSII 647 stability and starch content 648 Plant line Fv/Fm WT ntrc trxx trxf1f2 ntrc-trxx ntrc-trxf1f2 0.78±0.03a 0.76±0.02b 0.75±0.03b 0.79±0.02a 0.62±0.11c 0.52±0.10d 8.11±2.06a 2.25±0.49cd 4.36±0.81b 3.57±1.65bc 0.82±0.34d 1.59±0.51d Starch (μg/mg FW) 649 650 The maximum PSII quantum yield was determined as variable fluorescence (Fv) to 651 maximal fluorescence (Fm), Fv/Fm, in dark adapted leaves of plants grown under long- 652 day conditions. The Fv/Fm values ± standard deviation (SD) is the average of at least 10 653 measurements. The content of starch was determined from rosette leaves of plants 654 grown under long-day for 31 days and harvested after 12 h of the light period. Values 655 represent mean ± SD of three independent samples. Letters indicate significant 656 differences with the Student´s t test (Fv/Fm) or the Tukey’s Least Significance Difference 657 test (starch content) and a confidence interval of 95%. 658 659 660 SUPPLEMENTAL DATA 661 662 663 664 665 666 Fig. S1. Effect of the deficiency in NTRC and x- or f-type Trxs on the germination capacity. Table S1. Arabidopsis mutants used in this study. Table S2. Oligonucleotides used for determination of Arabidopsis mutant genotypes. Table S3. Oligonucleotides used for RT-qPCR analyses. 667 Figure 1. The level of NTRC, Trx x, Trx f1 and Trx f2 transcripts and growth 668 phenotype of wild type and mutant plants. 669 A, The contents of transcripts of the genes NTRC, TRX x, TRX f1 and TRX f2 were 670 determined by RT-qPCR from total RNA samples, which were extracted from leaves of 671 Arabidopsis wild type and mutant lines, as indicated. The pairs of oligonucleotides used 20 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 672 for cDNA amplification are indicated in Supplementary Table S3. Transcript levels 673 were normalized to ACTIN and the AT5G25760 genes and referred to the level of each 674 of the genes in wild type plants. Determinations were performed three times and mean 675 values ± standard error (SE) are represented. B, Plants of wild type and mutant lines that 676 were grown under long-day conditions (16 h light / 8 h darkness, light intensity 125 μE 677 m-2 s-1) during 22 days. C, Chlorophyll content was determined from leaf discs (n=6) 678 and average values ±SE are represented. Letters indicate significant differences with the 679 Student’s t test and a confidence interval of 99%. 680 Figure 2. FBPase activity and in vivo redox state of FBPase in wild type and 681 mutant lines. 682 A, FBPase activity was assayed in leave extracts from plants grown for four weeks 683 under long-day photoperiod and harvested at 12 h of the day period. Results are the 684 mean ± standard error (SE) from three biological replicates. Different letters above each 685 bar represent significant difference (P < 0.05) determined by one-way analysis of 686 variance followed by Tukey’s post-test. B, The in vivo redox state of FBPase was 687 determined by derivatization of thiols with the alkylating agent MM(PEG)24, as 688 indicated in Methods. Plants of the wild type and mutant lines were grown under long 689 day conditions for four weeks. Samples were harvested at the end of the period of 690 darkness (D) and then illuminated for 30 min with light intensities of 125 μE m-2 s-1 691 (growth light, GL) or 500 μE m-2 s-1 (high light, HL). Protein extracts from leaves were 692 subjected to SDS-PAGE under non-reducing conditions, transferred onto nitrocellulose 693 filter and probed with an anti-FBPase antibody. C, Band intensities were quantified 694 (ScionImage) and the percentage of reduction was calculated as the ratio between the 695 shifted band (reduced form) and the sum of reduced and oxidized forms. Each value is 696 the mean of three independent experiments ± standard error (SE) and letters indicate 697 significant differences between mutants with the Student’s t test at 95% confidence 698 interval. 699 700 Figure 3. In vitro reduction of FBPase by NTRC and Trxs x or f. 701 702 The in vitro FBPase reduction assay was carried out by incubating a fixed concentration 703 of the purified enzyme (2.5 μM) in the presence of 0.1 mM DTT, with increasing 704 concentrations, as indicated, of NTRC, Trx f1, Trx f2 and Trx x. red, reduced; oxi, 705 oxidized. 21 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 706 707 708 Figure 4. Light-dependent NPQ, linear photosynthetic electron transport and net 709 CO2 fixation rate in wild type and mutant lines. 710 Quantum yields of NPQ (A) and relative linear electron transport rates of photosystem 711 II, ETR (II) (B), were measured in pre-illuminated attached leaves of plants grown at 712 125 µE m-2 s-1 under long-day conditions. Chlorophyll fluorescence of photosystem II 713 was determined using a pulse-amplitude modulation fluorimeter. Determinations were 714 performed at least five times and each data point is the mean ± SE. White and black bars 715 indicate light and dark periods. C, Net CO2 assimilation rate (AN) was measured using 716 an open gas exchange system in leaves of plants grown during 4 weeks under long-day 717 photoperiod, which were dark-adapted and then illuminated with a PAR of 125 μE m−2 718 s−1. Six leaves were measured per line and mean mean ± SE are represented. Letters 719 indicate significant differences with the Tukey Test and a confidence interval of 99.9%. 720 721 Figure 5. Electron transmission microscopy analysis of chloroplast structure from 722 wild type and mutant lines. 723 Leaves of plants cultured under a 16-h light/8-h dark regime were collected after the 724 first symptoms of bolting. An increase in plastoglobule (white arrowheads) number, size 725 and association is observed in ntrc-trxx and ntrc-trxf1f2 mutant plants as compared to 726 wild-type and single mutant plants. Bars represent 1 µm. c, chloroplasts; cw, cell wall; 727 v, vacuoles; S, starch granules. 728 Figure 6. Level of representative chloroplast proteins in wild type and mutant 729 plants. 730 Western blot analysis of the content of representative components of photosynthetic 731 electron transport (D1, Lhcb1, PsaC and Lhca1), ATP synthesis (α-ATPase and γ- 732 ATPase) and carbon assimilation (RBC-L) in the lines under study. Chloroplasts of the 733 indicated lines were isolated from 5-week old long-day grown plants and fractionated 734 into thylakoid and stromal fractions as described in Methods. Protein samples 735 corresponding to thylakoids (0.5 μg of chlorophyll) or stroma (1 μg of protein) were 736 subjected to SDS-PAGE under reducing conditions, transferred to nitrocellulose filters 737 and probed with antibodies against thylakoid (D1, Lhcb1, PsaC, Lhca1, α-ATPase, γ22 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 738 ATPase) and stromal (RBC-L) proteins. Additional amounts (3x and 1/4x) of wild type 739 extracts were loaded for comparison. The experiment was performed twice with similar 740 results. 741 742 Figure 7. Redox regulation impairment provokes high mortality at the seedling 743 stage. 744 A, Seeds of the wild type and mutant lines, as indicated, were allowed to germinate on 745 soil and representative seedlings at 5, 8 and 11 days after germination (dag) are shown. 746 Bars represent 0.5 cm. For each line, the percentage of seedlings with emerging true 747 leaves (B) and the percentage of seedlings that remained alive (C) at the indicated dag 748 were determined and represented. The experiment was performed twice and means 749 values ± SE from three replicates of each experiment are represented. 750 751 Figure 8. Effect of sucrose on root production from seedlings of the wild type and 752 mutant lines. 753 Seedlings were grown on MS synthetic medium supplemented or not with 0.5% (w/v) 754 sucrose. A, Seedlings of the different lines, as indicated, after 7 days of growth under 755 continuous light (125 μE m-2 s-1). Root growth in the absence (B) or presence (C) of 756 added sucrose was monitored and mean values ± SE from three replicates are 757 represented. 758 759 760 761 762 763 764 765 766 767 768 769 770 771 23 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. 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Plant Cell 24: 1534-1548 842 Kramer DM, Johnson G, Kiirats O, Edwards GE (2004) New fluorescence 843 parameters for the determination of q(a) redox state and excitation energy fluxes. 844 Photosynth Res 79: 209-218 845 Lepistö A, Kangasjärvi S, Luomala EM, Brader G, Sipari N, Keränen M, 846 Keinänen M, Rintamäki E (2009) Chloroplast NADPH-thioredoxin reductase 847 interacts with photoperiodic development in Arabidopsis. Plant Physiol 149: 848 1261-1276 849 Lepistö A, Pakula E, Toivola J, Krieger-Liszkay A, Vignols F, Rintamäki E (2013) 850 Deletion of chloroplast NADPH-dependent thioredoxin reductase results in 851 inability to regulate starch synthesis and causes stunted growth under short-day 852 photoperiods. J Exp Bot 64: 3843-3854 853 Meyer Y, Belin C, Delorme-Hinoux V, Reichheld JP, Riondet C (2012) Thioredoxin 854 and glutaredoxin systems in plants: molecular mechanisms, crosstalks, and 855 functional significance. Antioxid Redox Signal 17: 1124-1160 856 Michalska J, Zauber H, Buchanan BB, Cejudo FJ, Geigenberger P (2009) NTRC 857 links built-in thioredoxin to light and sucrose in regulating starch synthesis in 858 chloroplasts and amyloplasts. Proc Natl Acad Sci USA 106: 9908-9913 859 Michelet L, Zaffagnini M, Morisse S, Sparla F, Perez-Perez ME, Francia F, Danon 860 A, Marchand CH, Fermani S, Trost P, Lemaire SD (2013) Redox regulation 861 of the Calvin-Benson cycle: something old, something new. Front Plant Sci 4: 862 470 863 Moon JC, Jang HH, Chae HB, Lee JR, Lee SY, Jung YJ, Shin MR, Lim HS, 864 Chung WS, Yun DJ, Lee KO (2006) The C-type Arabidopsis thioredoxin 865 reductase ANTR-C acts as an electron donor to 2-Cys peroxiredoxins in 866 chloroplasts. Biochem Biophys Res Commun 348: 478-484 867 Naranjo B, Díaz-Espejo A, Lindahl M, Cejudo FJ (2016a) Type-f thioredoxins have 868 a role in the short-term activation of carbon metabolism and their loss affects 869 growth under short-day conditions in Arabidopsis thaliana. J Exp Bot 67: 1951- 870 1964 871 Naranjo B, Mignee C, Krieger-Liszkay A, Hornero-Méndez D, Gallardo-Guerrero 872 L, Cejudo FJ, Lindahl M (2016b) The chloroplast NADPH thioredoxin 26 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 873 reductase C, NTRC, controls non-photochemical quenching of light energy and 874 photosynthetic electron transport in Arabidopsis. Plant Cell Environ 39: 804-822 875 Nikkanen L, Toivola J, Rintamäki E (2016) Crosstalk between chloroplast 876 thioredoxin systems in regulation of photosynthesis. Plant Cell Environ 39: 877 1691-1705 878 Okegawa Y, Motohashi K (2015) Chloroplastic thioredoxin m functions as a major 879 regulator of Calvin cycle enzymes during photosynthesis in vivo. Plant J 84: 880 900-913 881 Pérez-Ruiz JM, Guinea M, Puerto-Galán L, Cejudo FJ (2014) NADPH thioredoxin 882 reductase C is involved in redox regulation of the Mg-chelatase I subunit in 883 Arabidopsis thaliana chloroplasts. MolPlant 7: 1252-1255 884 Pérez-Ruiz JM, Spinola MC, Kirchsteiger K, Moreno J, Sahrawy M, Cejudo FJ 885 (2006) Rice NTRC is a high-efficiency redox system for chloroplast protection 886 against oxidative damage. Plant Cell 18: 2356-2368 887 888 Pogson BJ, Ganguly D, Albrecht-Borth V (2015) Insights into chloroplast biogenesis and development. Biochim Biophys Acta 1847: 1017-1024 889 Porra RJ, Thompson WA, Kriedemann PE (1989) Determination of accurate 890 extintion coefficients and simultaneous equations for assaying chlorophylls a 891 and b extracted with four different solvents: verification of the concentration of 892 chlorophyll standards by atomic absorption spectroscopy. Biochim Biophys Acta 893 975: 384–394 894 Pulido P, Spinola MC, Kirchsteiger K, Guinea M, Pascual MB, Sahrawy M, 895 Sandalio LM, Dietz KJ, González M, Cejudo FJ (2010) Functional analysis 896 of the pathways for 2-Cys peroxiredoxin reduction in Arabidopsis thaliana 897 chloroplasts. J Exp Bot 61: 4043-4054 898 Richter AS, Peter E, Rothbart M, Schlicke H, Toivola J, Rintamäki E, Grimm B 899 (2013) Posttranslational influence of NADPH-dependent thioredoxin reductase 900 C on enzymes in tetrapyrrole synthesis. Plant Physiol 162: 63-73 901 Rojas-González JA, Soto-Suárez M, García-Díaz A, Romero-Puertas MC, 902 Sandalio LM, Mérida A, Thormählen I, Geigenberger P, Serrato AJ, 903 Sahrawy M (2015) Disruption of both chloroplastic and cytosolic FBPase genes 904 results in a dwarf phenotype and important starch and metabolite changes in 905 Arabidopsis thaliana. J Exp Bot 66: 2673-2689 27 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 906 907 Schürmann P, Buchanan BB (2008) The ferredoxin/thioredoxin system of oxygenic photosynthesis. Antioxid Redox Signal 10: 1235-1274 908 Serrato AJ, Fernández-Trijueque J, Barajas-López JD, Chueca A, Sahrawy M 909 (2013) Plastid thioredoxins: a "one-for-all" redox-signaling system in plants. 910 Front Plant Sci 4: 463 911 Serrato AJ, Pérez-Ruiz JM, Spinola MC, Cejudo FJ (2004) A novel NADPH 912 thioredoxin reductase, localized in the chloroplast, which deficiency causes 913 hypersensitivity to abiotic stress in Arabidopsis thaliana. J Biol Chem 279: 914 43821-43827 915 Serrato AJ, Yubero-Serrano EM, Sandalio LM, Muñoz-Blanco J, Chueca A, 916 Caballero JL, Sahrawy M (2009) cpFBPaseII, a novel redox-independent 917 chloroplastic isoform of fructose-1,6-bisphosphatase. Plant Cell Environ 32: 811- 918 827. 919 Spínola MC, Pérez-Ruiz JM, Pulido P, Kirchsteiger K, Guinea M, González M, 920 Cejudo FJ (2008) NTRC new ways of using NADPH in the chloroplast. Physiol 921 Plant 133: 516-524 922 Thormählen I, Meitzel T, Groysman J, Ochsner AB, von Roepenack-Lahaye E, 923 Naranjo B, Cejudo FJ, Geigenberger P (2015) Thioredoxin f1 and NADPH- 924 dependent thioredoxin reductase C have overlapping functions in regulating 925 photosynthetic metabolism and plant growth in response to varying light 926 conditions. Plant Physiol 169: 1766-1786 927 Thormählen I, Ruber J, von Roepenack-Lahaye E, Ehrlich SM, Massot V, 928 Hummer C, Tezycka J, Issakidis-Bourguet E, Geigenberger P (2013) 929 Inactivation of thioredoxin f1 leads to decreased light activation of ADP-glucose 930 pyrophosphorylase and altered diurnal starch turnover in leaves of Arabidopsis 931 plants. Plant Cell Environ 36: 16-29 932 933 934 935 936 937 Waters MT, Langdale JA (2009) The making of a chloroplast. EMBO J 28: 28612873 Wu SH (2014) Gene expression regulation in photomorphogenesis from the perspective of the central dogma. Annu Rev Plant Biol 65: 311-333 Yoshida K, Hara S, Hisabori T (2015) Thioredoxin selectivity for thiol-based redox regulation of target proteins in chloroplasts. J Biol Chem 290: 14278-14288 28 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. 938 Yoshida K, Hisabori T (2016) Two distinct redox cascades cooperatively regulate 939 chloroplast functions and sustain plant viability. Proc Natl Acad Sci USA 113: 940 3967-3976 941 942 943 944 29 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 1. The level of NTRC, Trx x, Trx f1 and Trx f2 transcripts and growth phenotype of wild type and mutant plants. A, The contents of transcripts of the genes NTRC, TRX x, TRX f1 and TRX f2 were determined by RT-qPCR from total RNA samples, which were extracted from leaves of Arabidopsis wild type and mutant lines, as indicated. The pairs of oligonucleotides used for cDNA amplification are indicated in Supplementary Table S3. Transcript levels were normalized to ACTIN and the AT5G25760 genes and referred to the level of each of the genes in wild type plants. Determinations were performed three times and mean values ± standard error (SE) are represented. B, Plants of wild type and mutant lines that were grown under long-day conditions (16 h light / 8 h darkness, light intensity 125 μE m-2 s-1) during 22 days. C, Chlorophyll content was determined from leaf discs (n=6) and average values ±SE are represented. Letters indicate significant differences with the Student’s t test and a confidence interval of 99%. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 2. FBPase activity and in vivo redox state of FBPase in wild type and mutant lines. A, FBPase activity was assayed in leave extracts from plants grown for four weeks under long-day photoperiod and harvested at 12 h of the day period. Results are the mean ± standard error (SE) from three biological replicates. Different letters above each bar represent significant difference (P < 0.05) determined by one-way analysis of variance followed by Tukey’s post-test. B, The in vivo redox state of FBPase was 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. determined by derivatization of thiols with the alkylating agent MM(PEG)24, as indicated in Methods. Plants of the wild type and mutant lines were grown under long day conditions for four weeks. Samples were harvested at the end of the period of darkness (D) and then illuminated for 30 min with light intensities of 125 μE m-2 s-1 (growth light, GL) or 500 μE m-2 s-1 (high light, HL). Protein extracts from leaves were subjected to SDS-PAGE under non-reducing conditions, transferred onto nitrocellulose filter and probed with an anti-FBPase antibody. C, Band intensities were quantified (ScionImage) and the percentage of reduction was calculated as the ratio between the shifted band (reduced form) and the sum of reduced and oxidized forms. Each value is the mean of three independent experiments ± standard error (SE) and letters indicate significant differences between mutants with the Student’s t test at 95% confidence interval. 2 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 3. In vitro reduction of FBPase by NTRC and Trxs x or f. The in vitro FBPase reduction assay was carried out by incubating a fixed concentration of the purified enzyme (2.5 μM) in the presence of 0.1 mM DTT, with increasing concentrations, as indicated, of NTRC, Trx f1, Trx f2 and Trx x. red, reduced; oxi, oxidized. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. A 0.6 WT ntrc trxx trxf1f2 ntrc-trxx ntrc-trxf1f2 Y (NPQ) 0.4 0.2 0.0 0 200 400 600 time (s) 800 1000 1200 B 25 ETR (II) 20 15 10 5 0 0 400 200 600 Light intensity C AN (µmol m-2 s-1) 2.0 a 1.5 ac 1.0 ac c 0.5 b 0.0 b -0.5 Figure 4. Light-dependent NPQ, linear photosynthetic electron transport and net CO2 fixation rate in wild type and mutant lines. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Quantum yields of NPQ (A) and relative linear electron transport rates of photosystem II, ETR (II) (B), were measured in pre-illuminated attached leaves of plants grown at 125 µE m-2 s-1 under long-day conditions. Chlorophyll fluorescence of photosystem II was determined using a pulse-amplitude modulation fluorimeter. Determinations were performed at least five times and each data point is the mean ± SE. White and black bars indicate light and dark periods. C, Net CO2 assimilation rate (AN) was measured using an open gas exchange system in leaves of plants grown during 4 weeks under long-day photoperiod, which were dark-adapted and then illuminated with a PAR of 125 μE m−2 s−1. Six leaves were measured per line and mean mean ± SE are represented. Letters indicate significant differences with the Tukey Test and a confidence interval of 99.9%. 2 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 5. Electron transmission microscopy analysis of chloroplast structure from wild type and mutant lines. Leaves of plants cultured under a 16-h light/8-h dark regime were collected after the first symptoms of bolting. An increase in plastoglobule (white arrowheads) number, size and association is observed in ntrc-trxx and ntrc-trxf1f2 mutant plants as compared to wild-type and single mutant plants. Bars represent 1 µm. c, chloroplasts; cw, cell wall; v, vacuoles; S, starch granules. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 6. Level of representative chloroplast proteins in wild type and mutant plants. Western blot analysis of the content of representative components of photosynthetic electron transport (D1, Lhcb1, PsaC and Lhca1), ATP synthesis (α-ATPase and γATPase) and carbon assimilation (RBC-L) in the lines under study. Chloroplasts of the indicated lines were isolated from 5-week old long-day grown plants and fractionated into thylakoid and stromal fractions as described in Methods. Protein samples corresponding to thylakoids (0.5 μg of chlorophyll) or stroma (1 μg of protein) were subjected to SDS-PAGE under reducing conditions, transferred to nitrocellulose filters and probed with antibodies against thylakoid (D1, Lhcb1, PsaC, Lhca1, α-ATPase, γATPase) and stromal (RBC-L) proteins. Additional amounts (3x and 1/4x) of wild type extracts were loaded for comparison. The experiment was performed twice with similar results. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 7. Redox regulation impairment provokes high mortality at the seedling stage. A, Seeds of the wild type and mutant lines, as indicated, were allowed to germinate on soil and representative seedlings at 5, 8 and 11 days after germination (dag) are shown. Bars represent 0.5 cm. For each line, the percentage of seedlings with emerging true leaves (B) and the percentage of seedlings that remained alive (C) at the indicated dag were determined and represented. The experiment was performed twice and means values ± SE from three replicates of each experiment are represented. 1 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2017 American Society of Plant Biologists. All rights reserved. Figure 8. Effect of sucrose on root production from seedlings of the wild type and mutant lines. Seedlings were grown on MS synthetic medium supplemented or not with 0.5% (w/v) sucrose. A, Seedlings of the different lines, as indicated, after 7 days of growth under continuous light (125 μE m-2 s-1). 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J Exp Bot 67: 1951-1964 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Naranjo B, Mignee C, Krieger-Liszkay A, Hornero-Méndez D, Gallardo-Guerrero L, Cejudo FJ, Lindahl M (2016b) The chloroplast NADPH thioredoxin reductase C, NTRC, controls non-photochemical quenching of light energy and photosynthetic electron transport in Arabidopsis. Plant Cell Environ 39: 804-822 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Nikkanen L, Toivola J, Rintamäki E (2016) Crosstalk between chloroplast thioredoxin systems in regulation of photosynthesis. Plant Cell Environ 39: 1691-1705 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Okegawa Y, Motohashi K (2015) Chloroplastic thioredoxin m functions as a major regulator of Calvin cycle enzymes during photosynthesis in vivo. Plant J 84: 900-913 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Pérez-Ruiz JM, Guinea M, Puerto-Galán L, Cejudo FJ (2014) NADPH thioredoxin reductase C is involved in redox regulation of the Mg-chelatase I subunit in Arabidopsis thaliana chloroplasts. MolPlant 7: 1252-1255 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Pérez-Ruiz JM, Spinola MC, Kirchsteiger K, Moreno J, Sahrawy M, Cejudo FJ (2006) Rice NTRC is a high-efficiency redox system for chloroplast protection against oxidative damage. Plant Cell 18: 2356-2368 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Pogson BJ, Ganguly D, Albrecht-Borth V (2015) Insights into chloroplast biogenesis and development. Biochim Biophys Acta 1847: 1017-1024 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Porra RJ, Thompson WA, Kriedemann PE (1989) Determination of accurate extintion coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim Biophys Acta 975: 384-394 Pubmed: Author and Title CrossRef: Author and Title Google Scholar: Author Only Title Only Author and Title Pulido P, Spinola MC, Kirchsteiger K, Guinea M, Pascual MB, Sahrawy M, Sandalio LM, Dietz KJ, González M, Cejudo FJ (2010) Functional analysis of the pathways for 2-Cys peroxiredoxin reduction in Arabidopsis thaliana chloroplasts. 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