Journal of Experimental Botany, Vol. 62, No. 1, pp. 39–57, 2011 doi:10.1093/jxb/erq271 Advance Access publication 16 September, 2010 REVIEW PAPER Ion transport in seminal and adventitious roots of cereals during O2 deficiency Timothy David Colmer* and Hank Greenway School of Plant Biology, Faculty of Natural and Agricultural Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia * To whom correspondence should be addressed: E-mail: [email protected] Received 14 June 2010; Revised 5 August 2010; Accepted 12 August 2010 Abstract O2 deficiency during soil waterlogging inhibits respiration in roots, resulting in severe energy deficits. Decreased root-to-shoot ratio and suboptimal functioning of the roots, result in nutrient deficiencies in the shoots. In N2flushed nutrient solutions, wheat seminal roots cease growth, while newly formed adventitious roots develop aerenchyma, and grow, albeit to a restricted length. When reliant on an internal O2 supply from the shoot, nutrient uptake by adventitious roots was inhibited less than in seminal roots. Epidermal and cortical cells are likely to receive sufficient O2 for oxidative phosphorylation and ion transport. By contrast, stelar hypoxia–anoxia can develop so that H+-ATPases in the xylem parenchyma would be inhibited; the diminished H+ gradients and depolarized membranes inhibit secondary energy-dependent ion transport and channel conductances. Thus, the presence of two transport steps, one in the epidermis and cortex to accumulate ions from the solution and another in the stele to load ions into the xylem, is important for understanding the inhibitory effects of root zone hypoxia on nutrient acquisition and xylem transport, as well as the regulation of delivery to the shoots of unwanted ions, such as Na+. Improvement of waterlogging tolerance in wheat will require an increased capacity for root growth, and more efficient root functioning, when in anaerobic media. Key words: Aerenchyma, anoxia, Hordeum vulgare, hypoxic stele, hypoxia, ion transport, soil waterlogging, Triticum aestivum, xylem, Zea mays. Introduction Waterlogged soils are usually anaerobic (Ponnamperuma, 1984). When water displaces gases in the soil, the inward flux of atmospheric O2 is inhibited by approximately 320 000 times, owing to the 104-fold slower diffusivity and the 32-fold lower solubility of O2 in water than in air (Armstrong and Drew, 2002). The rate of soil O2 depletion following waterlogging depends upon the metabolic activity of microorganisms and plant roots, so O2 depletion will be more rapid at warmer temperatures and with high organic matter in the soil (Drew, 1992). When O2 is lacking, oxidative phosphorylation ceases, causing severe energy deficits with adverse effects on growth and nutrient uptake, and even resulting in root death. Following the onset of anoxia, root cells of many plant species begin to die within a few hours, or at most days (Gibbs and Greenway, 2003). In addition to O2 deficiency, and depending on soil type, waterlogging can also pose other challenges to roots; Mn2+, Fe2+, S2–, carboxylic acids, CO2 and ethylene (C2H4) can accumulate owing to soil microbial activity (Ponnamperuma, 1984). In submerged tissues, endogenous Abbreviations: COPR, critical O2 pressure for respiration; COPE, critical O2 pressure for root extension; Lp, hydraulic conductivity; Lpc, hydraulic conductivity of root cortical cells; Lpr, hydraulic conductivity across roots, to the xylem; NORC, non-selective outward-rectifying channel; ROL, radial O2 loss; SKOR channel, selective K+ outward-rectifying channel. Definitions: Anoxia, zero O2. Hypoxia, O2 below the critical O2 pressure for respiration (COPR), but not zero. Anaerobiosis, strictly defined as a condition without O2, but has been used to describe N2-flushed solutions in which O2 would be close to zero, but are not sure to be anoxic. Hypoxic–anoxic stele, stele which receives inadequate O2 for oxidative phosphorylation, but with some uncertainties that the entire stele is truly anoxic (Darwent et al., 2003). ª The Author [2010]. Published by Oxford University Press [on behalf of the Society for Experimental Biology]. All rights reserved. For Permissions, please e-mail: [email protected] 40 | Colmer and Greenway ethylene typically increases to between 0.1 and 1 Pa, partial pressures at which maximum physiological effects are often elicited (Jackson, 2008). In waterlogged soils CO2 can increase to 5–40 kPa, with adverse effects on roots of some species (Greenway et al., 2006). ‘Soil toxins’ can affect ion transporters, however, this aspect is not discussed further here (for a recent review see Pang and Shabala, 2010). In addition, there may be adverse interaction between waterlogging and other chemical constraints such as salinity (Barrett-Lennard, 2003) and high Al (Setter et al., 2009). Nevertheless, no such complexities were found in a series of experiments on wheat (Triticum aestivum L.) lasting for 12 d: the response by wheat to anaerobic (i.e. N2-flushed) solutions (Trought and Drew, 1980a) simulated, to a large extent, the response to soil waterlogging in a pot experiment (14 C, sandy soil with 3.3% organic matter; Trought and Drew, 1980c). The similarities included slower relative growth rates of roots and shoots, dramatically reduced nutrient transport to the shoots resulting in nutrient deficiencies, and premature leaf senescence (Trought and Drew, 1980a, b, c). Similar to wheat, barley (Hordeum vulgare L.) also soon became nutrient deficient upon soil waterlogging (Drew and Sisworo, 1979). Roots in anoxic media depend on internal gas-phase diffusion of O2 from the shoots, via aerenchyma, to enable respiration (Armstrong, 1979). Aerenchyma provides large interconnected gas channels that greatly enhance O2 movement from the shoots into, and along, roots. The importance of aerenchyma to enable respiration in the roots of maize (Zea mays L.) seedlings when in an anoxic medium was demonstrated by the adenylate energy charges in the 5 mm root tips of intact plants with roots in an anoxic medium. The energy charges were 0.7 and 0.4 in roots with 13% and 4% gas-filled porosity, respectively, compared with 0.9 when the roots were in air (Drew et al., 1985). A gasfilled porosity of 13% represents relatively modest aerenchyma formation; this value for maize compares with root porosity of up to 41% in rice (Oryza sativa L.) (Colmer, 2003a). Even when there is some O2 in the root medium (i.e. hypoxia¼suboptimal, but not zero O2), longitudinal gasphase O2 diffusion within roots is an important component of O2 supply (Armstrong and Beckett, 1987). For roots receiving O2 via aerenchyma, the internal concentration will decrease in a curvilinear gradient with distance down the roots, since movement occurs via diffusion and O2 is consumed along the diffusion pathway (Armstrong, 1979). Radial gradients in O2 also occur, the steepness of these gradients depends upon resistances to O2 diffusion and O2 consumption rates. So, apical regions and the stele of roots may receive a suboptimal supply of O2, since these tissues are typically of low gas-filled porosity, both have relatively high O2 demands, and occur at the ends of longitudinal (gas phase) and radial (predominantly liquid phase) diffusion paths (Armstrong, 1979; Armstrong and Beckett, 1987; Armstrong et al., 1991; Gibbs et al., 1998a). The focus of this review is on growth and function of seminal and adventitious roots of wheat in O2-deficient media, but data for maize (Zea mays L.) and barley (Hordeum vulgare L.) are included for topics not yet wellstudied in wheat, and some comparisons are also made with rice (Oryza sativa L.). Inhibition of nutrient uptake in O2-deficient roots received early attention as a major component of waterlogging damage in wheat, at least for the first 12 d (key papers by Trought and Drew, 1980a, 1981) and other crops, including barley and maize (reviewed by Drew, 1988). Subsequent work, as reviewed here, has also identified poor root functioning as a key limitation for waterlogging tolerance in dryland crops (wheat, barley, and maize). An overview of the responses of wheat to soil waterlogging and associated root zone hypoxia–anoxia is given in Fig. 1. The present review highlights the links between root O2 supply, energy metabolism, and energydependent ion transport, particularly the inhibition of xylem loading when the stele becomes anoxic, or at least ‘severely hypoxic’, the preferred term by Darwent et al. (2003), based on their detailed radial O2 profiles in maize roots. Broader information on waterlogging tolerance in wheat (and barley) is available in the review by Setter and Waters (2003). Recent reviews, that complement the focus here, have discussed the influence of waterlogging on soil and plant parameters of a nutrient uptake model (Elzenga and van Veen, 2010) or have dealt more broadly with the adverse effects of, and plant adaptations to, soil waterlogging and complete submergence of the shoots (Bailey-Serres and Voesenek, 2008; Colmer and Voesenek, 2009). Techniques for studying plant responses to hypoxia using nutrient solutions Most studies of the function of roots in O2-deficient conditions have used nutrient solutions, as O2 and nutrient levels can be controlled and measured, and roots can be accessed and studied, more easily than in soils. ‘Anaerobic’ treatment was commonly imposed by flushing a nutrient solution with N2 gas, but in many studies anaerobiosis (i.e. zero O2) was not confirmed (Trought and Drew, 1980a). These solutions might still have contained some O2 (dissolved O2 was 0.003 mM in N2-flushed solutions in experiments by Kuiper et al., 1994); O2 supply to roots from N2-flushed solutions will depend upon the purity of the N2 gas, pot design, and the flushing rates used. Even when O2 concentration in the external solution is known, the O2 status of root tissues can still be uncertain, since internal O2 will depend upon respiration rates, turbulence as determined by rates of bubbling or stirring, pot size and design, root density in the solution, root diameters, diffusion resistances across unstirred boundary layers of various sizes and across tissues of various diameters. As these factors differ amongst studies and species, comparisons of results can be difficult across experiments. An alternative to continuous N2 flushing is the use of nutrient solutions containing 0.1% (w/v) agar, which can be de-oxygenated by N2 flushing prior to use. The dilute agar prevents convective movements in the solution so this stagnant solution better mimics the changes in gas Ion transport in hypoxic roots | 41 Soil waterlogging Death of distal portions of seminal roots Anoxia Growth of seminal roots ceases Decreased root:shoot ratio Increased ethylene Altered balance of hormones (ethylene, auxin, cytokinins, etc.) Uppermost part of seminal roots receive some O2 internally and survive Solute loss and entry of soil toxins Small nutrient uptake Leaf senescence Leaf necrosis Increased number of adventitious roots Aerenchyma forms, but relatively low porosity, lack of ROL barrier, hexagonal cell packing, large stele, impede O2 diffusion to stele and apex Short adventitious roots - growth restricted by O2 diffusion to apex Root:shoot ratio only partially restored Some altered hormonal balance persists Moderate nutrient uptake Shoots remain small Death Very little shoot growth Partial mitigation of nutrient deficiency Grain yield depends also on recovery of roots and shoots when water recedes Fig. 1. Simplified overview of the responses to soil waterlogging of wheat seminal and adventitious roots, and resulting restrictions for shoot growth. Intolerance of roots to anoxia, and the poor capacity for internal O2 transport impacts severely on seminal roots. Although adventitious root numbers can increase, and these form more aerenchyma than seminal roots, suboptimal characteristics related to O2 transport result in modest growth and suboptimal functioning in waterlogged soils. ROL, radial O2 loss. composition found in waterlogged soils; i.e. increases in CO2 and ethylene in addition to low O2 in the continuously N2-flushed solutions (Wiengweera et al., 1997). The advantage of using stagnant agar solution is that accumulation of ethylene enhances the development of aerenchyma (Shiono et al., 2008), so that roots of wheat in stagnant agar solution were of higher porosity than those in N2flushed solution (Wiengweera et al., 1997). On the other hand, the N2-flushed treatment can have the advantage, depending on the experimental objective, of only changing one factor (i.e. O2 concentration) from the condition in aerated controls. An overview of responses, of seminal and adventitious roots of wheat to these two methods of imposing O2 deficiency in the root zone, is given in Fig. 2. Adverse effects of O2 deficiency on growth and mineral nutrient status Declines in shoot growth of plants in anaerobic root media may be caused by: (i) reduced development of roots, causing a suboptimal root-to-shoot ratio (root:shoot), and/or (ii) impaired functioning of roots. Decreased root:shoot may lead to an altered balance of phytohormones that might slow shoot growth and stimulate adventitious root growth, keeping root:shoot within certain limits (Drew, 1983). In addition, the combination of a reduced size of the root system and suboptimal root functioning would compromise the provision of nutrients, and perhaps water, to the shoots. The reduced shoot and root growth is unlikely to be associated with a shortage of sugars for catabolism, or for incorporation into biomass, because during root zone O2 deficiency sugars accumulate in tissues as growth is inhibited relatively more than photosynthesis (Setter et al., 1987). In wheat with roots in N2-flushed solution for 12–14 d, sugars increased by 20–30% in shoots and by 55–70% in roots (Barrett-Lennard et al., 1988). Sugar accumulation was also reported in roots of barley when growth was inhibited by low O2 supply (Limpinuntana and Greenway, 1979). In view of these large increases in sugar concentrations, ethanol-insoluble dry weight (i.e. structural biomass with soluble sugars removed) rather than total dry weight has been used by some authors to assess growth (Barrett-Lennard et al., 1988). Thus, respiration in roots in N2-flushed solution would be inhibited by low O2 availability (see below), rather than shortage of substrate. Responses of wheat to anaerobic nutrient solution at the early tillering stage, from the key study by Trought and Drew (1980a), are provided in Tables 1 and 2, and these are discussed in more detail below. O2 deficiency decreases root-to-shoot ratio and has more severe effects on seminal, than on adventitious, root growth In the key study on wheat at the early tillering stage (Trought and Drew, 1980a), ratios of root-to-shoot (root:shoot, dry weight basis) were 0.57 and 0.18 in aerated and N2flushed nutrient solutions, respectively (Table 1). Other 42 | Colmer and Greenway Adventitious roots (moderate aerenchyma) Seminal roots (none or little aerenchyma) N2 flushed (turbulent, low O2 solution) Stagnant agar solution (deoxygenated) In both cases, aerenchyma forms, but more in stagnant solution (Enhanced by entrapped ethylene) Stagnant agar solution (deoxygenated) N2 flushed (turbulent, low O2 solution) Epidermis and cortex receive some O2 from solution, stele severely hypoxic/anoxic Low O2 inhibits growth No O2 from external solution Death of root tips Nutrient uptake possible in epidermis, but xylem loading inhibited Short roots Only most basal few cm receive some O2 via internal diffusion from shoot base Decreased capacity for nutrient uptake and inhibited delivery to shoots Shoot nutrient deficiency Inhibition of shoot growth Root growth ceases at length supported by internal O2 diffusion, distal portion of stele and apex severely hypoxic, but survive Aerobic epidermis and cortex, but stele hypoxic/anoxic in distal portions Nutrient uptake continues into roots, but active xylem loading almost abolished, so ion movement to xylem depends upon the gradient from the ‘aerobic cortex’ Most O2 derived from ROL is ‘stripped away’ Stelar hypoxia-anoxia possibly more prevalent Aerobic ‘rhizosphere’ develops where ROL is high Greater internal O2 supply reduces stelar hypoxia-anoxia in larger portion of root In both cases, adventitious root functioning is superior to that of seminal roots, although diminished nutrient delivery via xylem to shoots is still significant Moderate shoot growth Fig. 2. Oxygen status and associated impacts on ion transport processes in seminal and adventitious roots of wheat when in two systems used to impose O2 deficits in nutrient solution experiments. N2-flushed solutions contain very low O2 and turbulence reduces boundary layers so facilitates any O2 uptake from the solution, whereas 0.1% agar solutions are stagnant and can be deoxygenated prior to use. As ethylene accumulates in stagnant agar solution, this method is more analogous to the changes in gas composition in waterlogged soils. The contrasting responses of seminal and adventitious roots (low and moderate aerenchyma, respectively) and treatment methods (N2-flushed versus stagnant agar) are described. ROL, radial O2 loss. experiments on wheat (e.g. Kuiper et al., 1994) also found similar decreases in root:shoot, despite large differences in control plant growth and inhibitory effects of the N2 treatment on shoot relative growth rates between these experiments conducted at different temperatures (see footnote of Table 1). Root:shoot also decreased, albeit to a smaller extent, when stagnant agar was used (Watkin et al., 1998) rather than N2 flushing to impose the ‘anaerobic’ treatment. These decreases in root:shoot are mainly due to the cessation of seminal root growth. By contrast, adventitious roots emerge (also termed nodal or crown roots) which at least partially replace the damaged seminal roots (e.g. for wheat, Trought and Drew, 1980a; for other species see reviews by Drew, 1983; Jackson and Drew, 1984). These adventitious roots typically develop more aerenchyma than the pre-existing seminal roots, and so have an improved capacity for internal O2 supply (discussed below). So, after periods of anaerobiosis lasting longer than 2 weeks, the adventitious root system is the largest fraction of roots for wheat (Trought and Drew, 1980a; Barrett-Lennard et al., 1988). However, these roots cannot grow to their full lengths, so the increased numbers of adventitious roots, from 7.2 to 11 at 14 d of exposure to N2-flushed solution, only partially compensated for the reduced rates of elongation; the relative growth rate (ethanol-insoluble dry weight basis) of adventitious roots was 0.173 d1 in N2- flushed solution compared with 0.188 d1 in aerated solution (Barrett-Lennard et al., 1988). Increases in numbers of adventitious roots during hypoxia are usually found and sometimes can be quite large; for example, in a tolerant barley cultivar adventitious root number increased from 14 in drained soil to 33 in waterlogged soil (Pang et al., 2007). As examples of reduced root lengths, the main axes of adventitious roots of wheat in N2-flushed nutrient solutions only grew to 9 cm (Barrett-Lennard et al., 1988) or 12 cm (Trought and Drew, 1980a); extension ceases when roots reach a length beyond which internal O2 diffusion cannot sustain growth (Armstrong, 1979). Although growth ceased, the tips of the adventitious roots remained alive as shown by resumed extension upon re-aeration (Trought and Drew, 1980a; Barrett-Lennard et al., 1988). Evidence for nutrient deficiency in shoots of wheat with O2-deficient roots A persuasive case for nutrient deficiency in shoots of wheat, when grown with roots in N2-flushed nutrient solution, was made in the studies by Trought and Drew (1980a). After 14 d in the N2-flushed treatment, uptake of all macronutrients was reduced (Table 2). Decreases in nutrient concentrations in the shoots can be quite severe, as one example the N concentration (mmol g1 dry weight) was reduced to 24% of that in shoots of the aerated control (Trought and Drew, Ion transport in hypoxic roots | 43 Table 1. Responses of wheat to N2-flushed nutrient solutiona Plants (cv. Capelle Desprez) were raised in aerated solution for 13 d, with aeration then continued or replaced by N2 flushing for another 14 d, all at 14 C. Data from Trought and Drew (1980a); values are means 6standard errors. Parameter Aerated N2-flushed % of Control Shoot N concentration (mmol g1 dry weight) Shoot fresh weight (g) Shoot dry weight (mg) Seminal root dry weight (mg) Adventitious root dry weight (mg) Root:shoot (dry weight basis) Adventitious root numberb 2.9960.06 0.7260.07 24 2.5760.11 357619 175610 2763 0.8260.04 210612 2061 1762 32 59 11 63 0.57 Not given, but not different between treatments 2161 0.18 32 0 Not specified 10 25 Longest adventitious root (cm) Adventitious root aerenchyma (%) Towards tip Near base 1261 57 Table 2. Effect of N2-flushed treatment on nutrient uptake and transport to shoots of wheat Values were estimated based on changes in shoot content and total transpiration between samplings, assuming no recirculation from shoots to roots via phloem. Wheat (cv. Capelle Desprez) was raised in aerated solution for 14 d, with aeration then continued or replaced by N2 flushing for another 14 d, all at 14 C. Data from Trought and Drew (1980a). Overall, data were similar for 0–4, 4–8, and 8–14 d of N2 flushing and the data presented here are for 8–14 d. Element Nitrogena Phosphorus Potassiumb Calcium Magnesium Nutrient solution Calculated (mM) for xylem stream of plants with roots in (mM) Aerated N2 flushed 0.50 0.25 0.75 1.00 0.50 9.52 1.28 4.92 0.51 0.29 2.27 0.24 0.55 0.26 0.07 – – a The example given is from the key study by Trought and Drew (1980a), with the results being considered typical for wheat. Similar inhibitory effects on roots, as described above by Trought and Drew (1980a), were also seen for cv. Gamenya grown at 15/20 C night/day in Kuiper et al. (1994). Reductions in shoot growth were less when wheat was in N2-flushed solution with high nutrient concentrations (Trought and Drew, 1981; Barrett-Lennard et al., 1988), in which seminal root growth was still severely inhibited. b Numbers were not reported by Trought and Drew (1980a). In some studies adventitious root numbers have been reported to increase in N2-flushed conditions (e.g. from 7 to 11 per plant after 14 d of hypoxia in cv. Gamenya; Barrett-Lennard et al., 1988). 1980a). Decreased nutrient concentrations in the shoots were not only due to reduced root:shoot, but were also caused by poor functioning of the root system; i.e. the inhibition of ion transport to the shoot per unit of root, as shown by greatly reduced concentrations of macronutrients in the xylem (Table 2). The hypothesis that nutrient deficiencies retard the growth of wheat in waterlogged soil can be tested by the response to increased nutrient supply. Some success with this approach has been achieved, though few of the experiments restored the growth of plants with O2-deficient roots to that in aerated/drained controls. Shoot N concentrations were increased in wheat in both aerated and N2-flushed solutions when high external NO 3 (10 mM) was supplied; but growth was only improved when all nutrients in the medium were increased 4-fold (Trought and Drew, 1981). Then, shoot fresh weight (the best indicator available of growth in that experiment) of plants in N2-flushed solution was reduced by 45% compared with 60% when only NO 3 was increased, however, there was no significant improvement in root growth (Trought and Drew, 1981). Improved root growth at high mineral nutrition was indicated in another experiment with wheat in waterlogged sand culture; Nutrient uptake rates (mmol g1 dw root d1) in a Nitrogen Phosphorus Potassiumb Calcium Magnesium 0.50 0.25 0.75 1.00 0.50 Aerated N2-flushed 284 57 202 22 12 113 15 39 17 4 Water uptake rates (ml g1 dw root d1) in a Aerated N2-flushed 47 52 NO 3. Supplied as Potassium concentration in solution is uncertain as the value of 0.75 in Table 3 in Trought and Drew (1980a) and reproduced here, differs from the total of 5.0 mM specified in the composition of the nutrient solution in the Materials and methods. dw, dry weight. b when Hoagland nutrient solution was increased from halfto full-strength (7–14 mM NO 3 ) the decrease in root dry weight relative to drained controls of a tolerant variety was less severe (50% reduction at 14mM NO 3 compared with 75% reduction at 7mM NO ; Huang et al., 1994). That N 3 deficiency contributed to some extent to the adverse effects of waterlogging was shown by applying a 0.1 M foliar urea spray to wheat seedlings during the first 3 d of a 14 d waterlogging treatment; reductions in shoot fresh weight at the end of 14 d were decreased from 40% to 32% and in chlorophyll concentrations from 76% to 64% (Trought and Drew, 1980b). High nutrition may also aid recovery after a return to aerated conditions. Even when the fresh weight of wheat shoots was not improved in N2-flushed solution containing 5 mM rather than 0.1 mM NO 3 , transference to aerated solution containing 0.5 mM NO 3 , increased the 44 | Colmer and Greenway fresh weight of the shoots, relative to the weight at the time of transfer, by 60% and 140% for plants exposed to 0.1 mM and 5 mM NO 3 , respectively, during the preceding 14 d in N2flushed solution (Trought and Drew, 1981). Experiments with foliar nutrient sprays on barley support that nutrient deficiency contributes to decreased growth of dryland cereals during the first 14 d of soil waterlogging. Daily foliar sprays of complete Hoagland nutrient solution to barley in pots of waterlogged soil improved shoot and root growth, to varying degrees, of six genotypes; root dry weight in one of the two tolerant genotypes became as high as in the drained pots (Pang et al., 2007); i.e. foliar sprays were most effective when the particular genotype has an inherent high tolerance to waterlogging. The improvement of root growth is particularly noteworthy and needs verification. The foliar spray also increased N and K+ concentrations (% dry weight) in shoots and roots, reaching levels in the plants in drained soil for one of the tolerant genotypes. Foliar nutrient application also increased the number of adventitious roots by 30–40%, while the percentage of chlorotic leaves decreased. The experiment of Pang et al. (2007) lacked a treatment of foliar application of nutrients to the shoots of plants in drained soil, so whether the response was specific to plants in waterlogged soil was not determined. Together, these experiments (Trought and Drew, 1980b, 1981; Pang et al., 2007) support the notion of nutrient deficiency as a major factor limiting the shoot growth of wheat and barley in waterlogged soils. Nevertheless, adverse factors other than nutrient deficiencies probably also contribute to the inhibition of shoot growth when roots are in hypoxic nutrient solution. Barrett-Lennard et al. (1988) found that wheat with high nutrient levels in solution (e.g. with NO 3 at 15 mM) still showed small (7–10%) inhibitions of shoot relative growth rate in a N2-flushed treatment, even though shoot tissue nutrient concentrations remained above ‘sufficiency levels’. We suggest these remaining reductions in shoot growth of wheat in N2-flushed solution with high nutrients may be associated with the regulation of root:shoot, as the root system in the N2-flushed solutions was still relatively small (see below). Possible regulation of root:shoot via hormonal changes in plants in O2-deficient media, for example, inhibited production of IAA, cytokinins, and gibberellins, or increased ABA transport to the shoot, was reviewed by Armstrong and Drew (2002). Summing up; attempts to relieve inhibitions of growth of wheat in N2-flushed solutions by increasing nutrient supply have only been partially successful. One interesting limitation to this approach was shown in the experiments by Huang et al. (1994): an increase from half- to full-strength Hoagland nutrients reduced the percentage of aerenchyma in adventitious roots, in the tolerant cultivar from 30% to 24% (Huang et al., 1994); therefore improvements in nutrition may have been partly counteracted by reduced O2 transport from shoots to roots. So, although some improvement might be achieved by improved management (i.e. foliar sprays and/or higher fertilizer use), the key approach remains the development of cultivars with improved tolerance to waterlogging. At least two characteristics need attention, growth of a reasonably-sized root system in waterlogged soil, particularly in terms of root length and number of adventitious roots, and improvement of root function in O2-deficient media. In the sections below, key limitations to root functioning in hypoxic–anoxic media, are discussed. Aerenchyma and internal O2 supply to seminal and adventitious roots of wheat Internal O2 supply is crucial to both growth and ion transport in hypoxic roots. As much of this review concerns the response of wheat to N2-flushed treatments in nutrient solutions, a summary is given of what is known of the O2 status of the roots studied. Furthermore, limitations to internal O2 transport are considered for seminal and adventitious roots of wheat, as compared with rice. In the experiments by Trought and Drew (1980a) on wheat in N2-flushed solution, transverse sections of adventitious roots showed aerenchyma occupied 10% of the crosssection near the tip and 25% near the root–shoot junction. Further information on O2 supply to adventitious roots of wheat was obtained for intact plants grown with roots in N2-flushed nutrient solutions (Barrett-Lennard et al., 1988), in which adventitious root porosity was 14%. O2 concentrations in the cortical gas spaces of these adventitious roots were assessed using root-sleeving O2 electrodes (Armstrong and Wright, 1975); this technique requires transferring the roots from the N2-flushed solution into O2-free stagnant agar. Assessed O2 partial pressures near the root tip were 1 kPa for 90 mm long roots and 2 kPa for 60 mm long roots, whereas in basal root zones near the root–shoot junction the levels were 4 and 8 kPa, respectively (BarrettLennard et al., 1988). No O2 data for the seminal roots were obtained, but the proximal sections had only 3% porosity, compared with 14% in the adventitious roots (BarrettLennard et al., 1988), so internal O2 concentrations would almost certainly be much lower in the seminal than in the adventitious roots. Adventitious root elongation for wheat in stagnant agar nutrient solution increased in response to raising O2 around the shoots in short-term experiments, confirming root growth in this stagnant medium was limited by low O2 supply (Wiengweera and Greenway, 2004). Raising O2 around the shoots from 20 kPa to 40 kPa for 2 h and then to 80 kPa, increased root elongation by 5-fold for 11–12 cm long roots, and by 2-fold for both 5–6 and 1–2 cm long roots (Wiengweera and Greenway, 2004). The large stimulation in the 11–12 cm roots is consistent with the predicted low O2 near the apex for roots of this length with 15–20% porosity (Armstrong, 1979). Thus, when O2 around the shoots was increased, more O2 could diffuse to the root apex and elongation resumed. Similarly, in 5–7-d-old seminal roots of wheat which, contrary to older seminal roots can develop porosity (namely 12%) during hypoxia, there were also large stimulations of elongation when O2 around the shoots was increased to 100 kPa (Thomson et al., 1990). Ion transport in hypoxic roots | 45 The surprising result in Wiengweera and Greenway (2004) was the substantial stimulation of the short adventitious wheat roots, indicating O2 deficiency even in the tips of these short roots which are close to the potential O2 source at the shoot base. The crucial importance of this limitation is highlighted by the rather slow extension of these young roots when in stagnant agar solution, at ;50% of aerated controls, with ambient O2 around the shoots and hence we will discuss some reasons why the growth of even these short adventitious roots was suboptimal. O2 partial pressure around the shoots required to stimulate root extension in wheat exceeds by ;20-fold the 4 kPa required around shoots of rice for optimum extension of 5–7 cm long adventitious roots (Armstrong and Webb, 1985); i.e. with ambient O2 concentration around the shoots, O2 provision to the tips of rice roots in an anoxic medium was more than ample, but clearly suboptimal for roots of wheat. The rice was grown in waterlogged potting mix prior to being washed out and transferred into stagnant agar; the roots were reported to be aerenchymatous, but percentage porosity or aerenchyma was not given. Assuming porosity in the rice roots of up to 41% (e.g. stagnant agar-raised plants; Colmer, 2003a), the much lower porosity of 15% for wheat adventitious roots grown in stagnant agar (Wiengweera et al., 1997) would only partially explain the higher shoot O2 requirement to sustain extension in the short adventitious roots of wheat. Other possible reasons include: the 15% porosity reported by Wiengweera et al. (1997) was for the entire adventitious root system, but short roots might have had lower porosity than the longer roots (TD Colmer, personal observations for young adventitious roots of wheat). In addition to the lower amount of aerenchyma (i.e. lower maximum porosity) formed in roots of wheat, other factors presumably also contribute to the spectacular differences in O2 diffusion to the root apex, as compared with rice. Firstly, radial O2 loss (ROL) from basal parts of wheat adventitious roots with aerenchyma can be substantial (Thomson et al., 1992), whereas roots of rice possess a barrier against ROL in basal zones (Armstrong, 1971; Colmer, 2003a), although even in rice the barrier is less pronounced in short than in long roots (Colmer et al., 2006a). The barrier to ROL restricts radial losses, thus promoting longitudinal diffusion towards the apex (Armstrong, 1979). Secondly, as aerenchyma typically terminates a few cm behind root tips (e.g. rice, Armstrong, 1971; wheat, Thomson et al., 1992), diffusion to the apex depends on porosity in the intervening tissue, which is almost certainly less porous in wheat, than in rice. Root cortex cells in rice occur in a cubical arrangement (Justin and Armstrong, 1987), whereas in wheat the pattern is hexagonal (assessed from micrographs in Huang et al., 1994; TD Colmer, personal observations). These different cell packings can result in substantial differences in tissue porosity. In rice roots with cubic packing, porosity was ;9% near the non-aerenchymatous tip (Armstrong, 1971), whereas it can be as low as 1% in roots with hexagonal cell arrangements (Justin and Armstrong, 1987). Thus, very low porosity in the younger tissues in adventitious roots of wheat, resulting in high resistance to internal O2 diffusion, would explain the finding of Wiengweera and Greenway (2004) that, even in short roots, O2 supply from the shoot is suboptimal for root growth in an O2-free medium. Taking rice as a model species is useful but also has limitations for comparisons with dryland cereals. Adaptation of rice to flooded conditions involves a range of characteristics (traits in wetland plants were reviewed by Bailey-Serres and Voesenek, 2008; Colmer and Voesenek, 2009), which amplifies the challenge to achieve a large improvement in waterlogging tolerance of dryland species such as wheat. In any case, paddy rice may not be the best model, since dryland cereals such as wheat would typically experience transient waterlogging, while even 3 d waterlogging can severely retard development after drainage occurs (Malik et al., 2002). So upland and/or rain-fed rice, in which final growth might be in drying soils, might provide a better model for dryland cereals. Recovery upon drainage following waterlogging would be especially important for wheat, as rapid growth of deep roots following drainage will be required to obtain sufficient water later in the season in Mediterranean climates. Some traits of importance in rice, such as a barrier to ROL (Armstrong, 1971; Colmer, 2003a) might be counterproductive for species faced with transient or intermittent flooding; possible reductions in water and nutrient uptake for roots of wetland plants with a barrier to ROL were suggested by Koncalova (1990). However, the few experiments conducted to address this question have not found such drawbacks (e.g. NO 3 uptake by rice roots, Rubinigg et al., 2002; water uptake by Hordeum marinum roots, Garthwaite et al., 2006). The exception is a strong barrier induced in rice roots in response to soil toxins, then water permeability declined and toxin entry was impeded (Armstrong and Armstrong, 2005a). Even when the barrier in roots of rice was induced by growth in stagnant solution, toxin (namely Cu2+) entry was impeded (Kotula et al., 2009). One drawback of a barrier to ROL, however, could be restricted O2 entry into roots when the soil is not waterlogged, causing suboptimal O2 supply to persist in some root parts even in a drained soil. Such trade-offs, if any do occur, would be reduced in species with inducible barriers to ROL, as compared with those that constitutively develop a barrier (reviewed by Colmer, 2003b). Inducible barriers to ROL occur in rice (Colmer, 2003a) and in some wild relatives of cultivated dryland species in the Triticeae (McDonald et al., 2001; Garthwaite et al., 2003); however, in rice once the barrier has formed, it persists even upon re-aeration, while new root growth again lacks a barrier (MCH Cox and TD Colmer, unpublished data). Comparison of rice to wheat also emphasizes that in the search for more tolerant wheat cultivars, a combination of higher aerenchyma percentage and a larger root system containing aerenchyma should be sought in wheat (Thomson et al., 1992). Genetic diversity in capacity to form a large system of adventitious roots was recently reported for barley (Pang et al., 2007); after 14 d of soil waterlogging a tolerant genotype produced 1.7-times more 46 | Colmer and Greenway adventitious roots than an intolerant genotype. Increased porosity of seminal roots would also be beneficial. As stated earlier, young seminal roots of wheat formed 12% gas-filled porosity when raised in hypoxic nutrient solution (Thomson et al., 1990), and it would be beneficial if that capacity was enhanced in older seminal root systems. The capacity to form aerenchyma in seminal roots might differ between wheat genotypes, as aerenchyma did form in seminal roots of wheat in sand culture when waterlogging was imposed on 14-d-old plants; with the genotype Savanna forming aerenchyma along the entire root length and reaching 21% near the root–shoot junction. By contrast, in seminal roots of a less tolerant genotype no aerenchyma formed in the critical section near the root–shoot junction, although some aerenchyma formed in the lower sections (Huang et al., 1994). Yet, although during waterlogging growth in Savannah was better than in the second genotype, the dry weight of the shoots of Savannah at two levels of N supply (3 and 6 mM NO 3 ) was still only 50% and 70% of the drained controls, respectively (Huang et al., 1994). Experiments are needed to test the capacity for aerenchyma formation in seminal roots of a larger range of wheat genotypes. Similarly, tests are required for much older plants; when wheat in the booting stage (153-d-old) was waterlogged at 1.5–2 cm above the soil surface, cross-sections showed large aerenchyma formed within 96 h in 10–15 cm long adventitious roots (Jiang et al., 2010). Furthermore, development of constitutive aerenchyma in roots, both in adventitious and seminal systems, might enhance the tolerance of transient waterlogging, as aerenchyma takes time to develop fully; 72–102 h for wheat adventitious roots (Malik et al., 2003) and 48 h for 50–80 mm long seminal roots, as judged by O2 transport from the shoots to root tips (Thomson et al., 1990). In summary, for wheat in anaerobic media, the bulk of the seminal roots would receive very little O2 owing to low tissue porosity, while after exceeding a certain length or age, the seminal roots might not form aerenchyma (at least in one genotype, Thomson et al., 1990). Adventitious roots develop aerenchyma, so their internal O2 supply is superior to that of pre-existing seminal roots, but the low-to-moderate porosity and lack of a barrier against ROL (cf. Thomson et al., 1992) means the more distal portions (i.e. further from the root–shoot junction) of wheat adventitious roots still suffer from O2 deficits. These O2 deficits in the distal portions of the seminal and adventitious roots of wheat, including towards the apex and also within the stele, as reviewed below, will impact on functioning in anaerobic media. O2 gradients in roots: occurrence of stele hypoxia–anoxia O2 concentrations can differ markedly across roots. An example of an O2 profile, from the external medium to the centre of an excised, primary and non-aerenchymatous maize root, is shown in Fig. 3. Even in a flowing medium, a considerable boundary layer resistance was evident as a steep O2 gradient between bulk solution and epidermis. O2 also declined steeply across tissues of low porosity, namely the outer few cell layers of the root and again in the stele, whereas within the porous cortex the gradient was very gradual. Such concentration gradients are inherent when supply is via diffusion between a source and sink, as determined by resistance to diffusion and O2 consumption along the diffusion path (Armstrong and Beckett, 1987). The O2 concentration in the pericycle lining the protoxylem and metaxylem vessels of the roots shown in Fig. 3 has been Fig. 3. Profile of O2 concentration across an excised primary root of Zea mays in a flowing nutrient solution containing 0.05 mM O2, at 25 C. An O2 microelectrode was moved in steps towards, and then through, the root (75 mm behind the apex, total length 135 mm). The flow rate of the medium was 1.8 mm s1, calculated using the depth of the vessel as 10 mm (H. Greenway, personal communication), rather than the erroneous 100 mm stated by Gibbs et al. (1998). The line with symbols is the in-track, and that without symbols is the out-track. Reproduced from Gibbs et al. (1998) in Australian Journal of Plant Physiology with kind permission of CSIRO Publishing. Ion transport in hypoxic roots | 47 assessed at 3 lM or lower. No ready comparisons with other tissues of high O2 demands can be made, the best available data is for COPE of rice roots of 1.25–2.5 lM (assessed by Gibbs et al., 1998a from Armstrong and Webb, 1985). These rice root tips presumably had relatively low O2 requirements, as extension rates of 0.6 mm h1 (;14 mm d1) (Armstrong and Webb, 1985) were relatively low compared with up to 26 mm d1 (Colmer, 2003a), as the tips might have been low in sugars (Gibbs and Greenway, 2003). Thus, the low O2 concentration of 3 lM in the xylem parenchyma indicates severe hypoxia, since the cells loading ions into the xylem can be expected to have high rates of respiration (de Boer and Volkov, 2003). Gradients in O2 across roots were inferred by the classical studies of root respiration by Berry and Norris (1949); these authors hypothesized that as O2 was depleted from the bulk medium, hypoxia–anoxia would occur in the core of tissues, while more peripheral cells still received adequate O2 for oxidative phosphorylation. When the O2 concentration was below the critical O2 pressure for respiration (COPR) of excised onion root segments, the respiratory quotient (CO2 produced/O2 consumed) increased, implying a switch to ethanolic fermentation in cells of the innermost core (Berry and Norris, 1949). This interpretation of the onset of O2 deficits in the core of tissues when the external concentration declines below the COPR is consistent with mathematical modelling (Armstrong and Beckett, 1987; Armstrong et al., 2009); with progressive expansion of the volume of the anoxic core as external O2 supply decreases below the COPR (i.e. the distance decreases to which O2 can diffuse into the tissue before all is consumed). The length of root over which the stele becomes O2 deficient depends upon several factors, these have already been alluded to in the Introduction; applying these general principles of Armstrong and Beckett (1987) to the stele, the factors are: (i) the concentration of O2 in the cortical gas spaces (determined by external O2 concentration, O2 diffusion in any aerenchyma and/or in the porous cortex, rates of ROL along the root, and distance from the root– shoot junction), (ii) the resistance to radial O2 diffusion through the endodermis and stelar tissues, (iii) the rate of O2 consumption in the stele, (iv) the radius of the stele, determining its absorbing surface at the endodermis, subsequent diffusion-path distance to the centre, and total volume. So, one adaptation to restricted O2 supply in roots might be a narrower stele (Armstrong et al., 2000), reducing its volume-to-surface area ratio, and diffusion-path length for O2 to reach the parenchyma cells near the xylem. Species differ in the percentage of adventitious root cross-sectional area occupied by the stele, with wheat at 16% (assessed from micrographs in Huang et al., 1994) compared with only 5% in rice (McDonald et al., 2002). Morphological acclimation might also occur, the proportional area of stele in cross-sections of barley adventitious roots decreased by 20% in waterlogged soil, compared with drained controls (Pang et al., 2004). The O2 profile in Fig. 3 was for an excised maize root immersed in solution, so there was no other O2 source than the root medium. The O2 provision to roots of intact plants is less well-defined than for excised roots. In studies with intact maize, severe O2 deficiency in the stele was indicated for the ;20 mm root tip of a 105 mm long nonaerenchymatous root; by contrast, in roots with aerenchyma only the stele in the 10 mm root tip was low in O2 (Darwent et al., 2003). These authors discuss uncertainties in interpretations of values obtained with the O2 microelectrodes and conclude some O2 consumption might have occurred concurrently with anaerobic catabolism, hence they suggest referring to ‘severely hypoxic’ rather than ‘anoxic’ steles (Darwent et al., 2003). In view of these uncertainties, data on O2 concentrations need to be complemented with metabolic evidence. A hypoxic stele was indicated by the higher pyruvate decarboxylase activity in the stele versus the cortex from the intact primary root of intact maize seedlings in anoxic medium (Thomson and Greenway, 1991). Furthermore, ATP:ADP in roots of intact maize in N2-flushed solution (Table 3) are consistent with the notion that the cores of tissues can become O2 deficient (suboptimal respiration), whereas the outer layers receive adequate O2 to meet their respiratory demands. Near the root–shoot junction (the source of O2 for roots in anoxic medium), ATP:ADP in roots of ;14% porosity was more similar to that in aerated Table 3. ATP-to-ADP ratio (i.e. ATP:ADP) in intact adventitious roots of Zea mays pretreated with different O2 supplies so as to obtain a range of root porosity values, prior to transfer into N2flushed solution, with shoots in air Treatments were imposed on 12-d-old plants for 11 d, in solutions bubbled with 40% O2 (;4% root porosity), 5% O2 (;10% root porosity), or non-turbulent solution (;14% root porosity). ATP:ADP was measured on roots 75 min after transfer of the roots into the N2-flushed solution. Data from Drew et al. (1985). Segments at distance (mm) from the root– shoot junction 0–10 (basal segment) 100–110 135–145 145–150 (tips of roots with ;14% porosity) 200–205 205–210 (tips of roots with ;4 and ;10% porosity) ATP:ADPa in roots with porosity of ;4% ;10% ;14% 3.860.03 1.160.04 n.a.b n.a. 3.660.3 1.560.1 n.a. n.a. 4.460.05 3.260.5 1.760.02 2.060.15 0.560.02 0.760.02 1.760.05 1.560.2 n.a. n.a. a For comparison with the values in the table, ATP:ADP in root segments when excised and in aerated solution was 5.5 and when in N2-flushed was 0.66. b n.a. ¼ not applicable. n.a. entries in the table result from roots being of different lengths following pretreatments; roots from nonturbulent solution were shorter than those pretreated with 5% or 40% O2, so root tips were different distances from the root–shoot junction as indicated in the table. 48 | Colmer and Greenway roots, whereas in roots with ;4% and ;10% porosity ATP:ADP had declined, and the ratio then remained rather steady between 100 mm and 205 mm from the root–shoot junction (Table 3). The very low values for ATP:ADP of 0.5–0.7 in the distal part of the roots with ;4% porosity indicates these were, not unexpectedly, anoxic in the cortex as well as in the stele. The pattern down the roots and values in distal regions for the roots with ;10% porosity are to be expected when the porous cortex has sufficient O2 for oxidative phosphorylation, while the adjoining stele is at least severely hypoxic (models of Armstrong and Becket, 1987). Consistent with the O2 profiles from Darwent et al. (2003), roots with ;14% porosity only dropped to low ATP:ADP further than 110 mm from the root–shoot junction. ATP:ADP of 1.7–2 in the distal parts of these roots of ;14% porosity (Table 3) were presumably the composite of high values in the ‘aerobic cortex’ and low values in the ‘hypoxic–anoxic stele’. For an anoxic stele these values were assessed at 2.4–1.8 (see Appendix 1). An anoxic stele would have a large effect on ATP:ADP in the whole roots, since stelar cells are more cytoplasmic than those of the cortex (discussed in relation to ion transport by de Boer and Volkov, 2003; and based on differences in O2 consumption rates between stele and cortex, Armstrong and Beckett, 1987; Armstrong et al., 2000). Confirmation of these deductions may be obtained by separating stele from cortex for determinations of nucleotides, as was successfully done for the active–inactive state of PDC; i.e. the separation and liquid N2 freezing of the tissues was fast enough to prevent the expected rapid metabolic changes (Thomson and Greenway, 1991). The above evidence strongly indicates that resistances to diffusion limit O2 availability to the interior of roots when external O2 decreases below the COPR (Armstrong et al., 2009); however, an alternative hypothesis has been proposed of the down-regulation of respiration by plant tissues ‘sensing’ declines in O2 availability (Gupta et al., 2009). This alternative hypothesis, however, appears not to have accommodated the influence of diffusion limitations causing declines in O2 consumption rates by tissues when external O2 is below the COPR. In any case, the comprehensively documented occurrence of a severely hypoxic–anoxic stele in maize roots when external O2 declines below the COPR is adequate to account for the observed decreases in respiration of roots in hypoxic solutions (Atwell et al., 1985). The consequences of O2 deficiency in the stele, or part thereof, for ion transport by roots is considered in some detail later in this review. Water uptake and possible bypass flow of nutrients, in O2-deficient roots The possible inhibition of water transport is considered before reductions in ion transport, since flow rates of xylem sap can, under certain circumstances, determine the rates of ion transport to the shoots, for example, in plants of high ion status a 5-fold decrease in transpiration reduced K+ flow to the shoots by 4-fold (Russell and Barber, 1960). Effects of hypoxia–anoxia on root hydraulic conductivity (Lp) Short-term studies, of less than 1 h exposure, show that O2 deficits reduced hydraulic conductivity of wheat root cortical cells (Lpc) by 45%, while root hydraulic conductivity for flow to the xylem (Lpr) was reduced by 2–45%, presumably due to partial closure of aquaporins, either in the cortical cells or in the endodermis (Bramley et al., 2010). The partial closures of aquaporins may be part of a more general reduced permeability of membrane channels under hypoxia–anoxia, particularly since some aquaporins can also conduct several other small neutral solutes (Bramley and Tyerman, 2010). Reduced conductivity of ion channels has been shown for animal cells (Hochachka, 1991) and indicated for K+ channels in anoxic rice coleoptiles (Colmer et al., 2001). Furthermore, transcript abundances of most aquaporin genes decreased in Arabidopsis exposed to 0.03 mM O2, but transcripts of NIP 2:1 increased (Liu et al., 2005); of interest since the NIP 2:1 protein might transport small metabolites (Bramley and Tyerman, 2010). Presumably, the NIP protein also increased in abundance, although neither the turnover rates of aquaporins nor the functionality of this aquaporin under hypoxic conditions is known. Whether reductions in Lpr due to closure of aquaporins persist over longer periods remains uncertain. Any long-term reductions of Lpr are more likely to be associated with any of the following factors: cell death, modifications of cell walls, and plugging of the xylem vessels (Bramley and Tyerman, 2010). For maize, two studies have assessed Lpr of hypoxic roots for several hours both using excised roots. One study is relevant to roots with low gas-filled porosity in waterlogged soil; i.e. with time the roots became severely hypoxic or anoxic. In this study, the excised roots showed the first reductions in Lpr after 5 h of commencement of continuous N2 flushing, when O2 in the solution had decreased below 2 kPa; O2 would have continued to decline to very low levels and the Lpr remained reduced by ;60% for the last 17 h (Everard and Drew, 1987). A second study is relevant to aerenchymatous roots in waterlogged soil, since the excised maize roots were exposed to a steady O2 concentration of 0.05 mM so that the cortex would have been aerobic whereas the stele was hypoxic (cf. Fig. 3). These roots initially showed a ;25% reduction in Lpr, followed by at least partial recovery within 1.5–4 h (Gibbs et al., 1998b). Consistently, in the case of wheat in N2-flushed solution for 14 d, water uptake (root dry weight basis) was not reduced when compared with aerated controls (Table 2), and was even 50% higher in the N2-flushed treatment during the first 4 d (Trought and Drew, 1980a). Importantly, most of this flow must have been via the, putative, hypoxia-intolerant seminal root system, since at 4 d these roots still contributed ;90% to the total root mass (Trought and Drew, 1980a). Ion transport in hypoxic roots | 49 In summary, closure of aquaporins during the first few hours of root zone hypoxia remains interesting, but at present appears to be of little relevance to longer-term exposures of roots to hypoxia and anoxia. Longer-term studies of wheat are needed to confirm these deductions, and should evaluate possible acclimation in aquaporin regulation over a few days of hypoxic treatment, for both seminal and adventitious roots. Furthermore, it would be interesting to evaluate the cellular responses in the cortex and stele of the adventitious roots, as these are expected to differ in O2 supply when in an anoxic medium (aerobic cortex and hypoxic–anoxic stele can occur, as described earlier in this review). Ion transport across roots by mass flow? Trought and Drew (1980a) proposed that for wheat in N2flushed solution, water (and nutrients) might simply enter via mass flow through damaged roots in response to transpiration; an assessment based on comparisons of ion concentrations estimated in the xylem with those in the external solution (Table 2). We question this notion because energy-dependent transport of anions is indicated by similar phosphate and higher N in the xylem than in the external solution (Table 2). The more likely mechanism for the persisting, albeit greatly reduced, ion uptake by roots of wheat in N2-flushed nutrient solutions (Table 2) is secondary energy-dependent transport via the aerenchymatous adventitious roots, and through the basal portions of the seminal roots, which would still receive O2 from the shoots (Armstrong, 1979; Barrett-Lennard et al., 1988). Application of inhibitors of respiration to roots in N2-flushed solutions could be used to test whether the main pathway of the nutrient uptake is by mass flow, or by energy-dependent transport via the root portions still receiving O2 from the shoots. Furthermore, the possible occurrence of mass flow of external solution (also termed by some ‘by-pass flow’) can be tested by the addition to the nutrient solution of an apoplastic tracer such as PTS, as used so effectively in studies of rice (Yeo et al., 1987). By-pass flow was ;0.5% of total water flow in aerated wheat roots (Garcia et al., 1997), so any increase in such flows during root hypoxia should be easily detected. Nutrient uptake into roots, and transport into the xylem, during hypoxia A much larger effect of hypoxia on ion transport to the xylem than on net uptake into the root cells will be discussed using the scheme in Fig. 4 and also the crucial information discussed earlier that, depending on a number of root characteristics, low external O2 concentrations may lead to severe hypoxia in the stele over much of the root length, while the cortex and epidermis still receive sufficient O2 for oxidative phosphorylation. In fully-aerobic roots, ions taken up from the external solution are loaded into the xylem with energy provided by their plasma membrane H+-ATPases with subsequent ion release into the xylem (de Boer and Volkov, 2003). For example, K+ flux into the xylem is through SKOR channels; i.e. highly K+-selective outward rectifying channels (de Boer and Volkov, 2003; Pang and Shabala, 2010). This process is also dependent on the accumulation of high K+ in the xylem parenchyma cells (de Boer and Volkov, 2003), as supported by X-ray microanalysis, showing particularly high K+ concentrations in the xylem parenchyma cells bordering the protoxylem and early-maturing metaxylem vessels (Drew et al., 1990). During stelar hypoxia–anoxia, H+-ATPases in the xylem parenchyma would be inhibited, so the sophisticated regulatory mechanism of optimizing transport to the xylem is disrupted, as SKOR channels would close. We suggest that ions accumulated by the epidermis and cortex from the external solution might still flow via plasmodesmata to the xylem parenchyma by diffusion, facilitated by cytoplasmic streaming, while ions in the xylem parenchyma could still be released through non-selective ion channels, most likely via NORC (nonselective outward-rectifying channels, de Boer and Volkov, 2003; Pang and Shabala, 2010); these outward rectifying channels are strongly voltage dependent (Pang and Shabala, 2010). This, albeit reduced ion movement to the xylem, would be facilitated by the depolarization of the membranes of the xylem parenchyma, favouring passive cation flow into the xylem vessels. Overall, both the total flow of ions to the xylem and its K+/Na+ selectivity will be reduced in hypoxic roots. Electrochemical gradients for both anions and K+ transfer to the xylem vessels are likely to be favourable. Data on the effect of decreased O2 in the medium on trans-root electrical potential (i.e. electrical potential difference between external bathing medium and xylem sap) are available for Plantago, when O2 was lowered to 10 kPa the transroot electrical potential became more negative from –20 mV in aerated roots to –60 mV in the hypoxic roots (de Boer et al., 1983), presumably because the stele became hypoxic. During hypoxia, the xylem parenchyma cells are likely to depolarize to a value less negative than –100 mV; as measured for cortical cells of seminal roots of wheat (–90 mV at 0.008 mM O2, Buwalda et al., 1988b; –80 mV at 0.02–0.03 mM O2, Zhang and Tyerman, 1997). So the potential difference still favours anion release, but maintains, albeit less pronounced, an electrical gradient favouring K+ fluxes from the xylem into the parenchyma. Nevertheless, the free energy gradient for K+ fluxes may be from the parenchyma to the xylem, since the electrical component of the free energy can be more than balanced by a steep concentration gradient across the xylem parenchyma– xylem interface. The free energy gradient for diffusive ion movement between xylem parenchyma and xylem vessels can be assessed from the flux ratio equation (equation 3.24 in out o i zjFEM/RT Nobel, 1974; Jin ), where Jin j /Jj ¼cj /(cje j is the influx out of ion j, Jj is the efflux of ion j, coj and cij are outside and inside concentrations of ion j, e is the exponential, zj is the valence of ion j, F is Faraday, EM is the membrane potential, R is the gas constant, and T is the temperature in oK). 50 | Colmer and Greenway A Fully-aerobic root Xylem parenchyma Epidermis and cortex -120 mV ATP H+ Na+ H+ Anion B Aerobic epidermis/cortex and anoxic stele H+ E n d o d e r m i s -120 to -160 mV Na+ retrieval ATP Epidermis and cortex -20 to - 40 mV -120 mV Xylem parenchyma ATP HKT H+ H+ Na+ Ion K+ Ions Gated Cation Xylem H+ H+ H+ SKOR Anion NORC Ions -100 mV -60 mV E n Reduced Na+ d retrieval HKT o ATP d H+ e r m Ion i H+ s Gated SKOR Cations & Anions Cation Anion Xylem NORC Anion [ion] [ion] Hypothetical [ion] gradients across roots Ext. Epidermis and cortex Xylem parenchyma Xylem Ext. Epidermis and cortex Xylem parenchyma Xylem Fig. 4. Diagram of ion movements through roots to the xylem, based on de Boer and Volkov (2003), Munns and Tester (2008), and Pang and Shabala (2010), simplified by us to postulate on the consequences of a hypoxic–anoxic stele (see text). (A; Left half) In aerobic roots, ATP produced in respiration is available to membrane H+-ATPases, ‘energized membranes’ enable ion transport, so ions are accumulated to high concentrations in xylem parenchyma and released into the xylem (‘active loading’). (B; Right half) In roots with anoxic stele but aerobic cortex, active xylem loading is inhibited, and ion movement to the xylem depends upon ion levels accumulated in the aerobic cortex, with diffusion across the symplast to the xylem facilitated by cytoplasmic streaming. Below each main diagram, graphs show hypothetical K+ gradients across roots (note: Ext., external solution). Numerous ion transporters and channels are not shown in this simplified scheme. Channels of particular interest are: (i) SKOR which releases K+ into the xylem (highly selective for K+ over Na+) as part of the loading system, but which would close owing to the inhibition of the H+-ATPase and thus inhibition of energydependent transport in the hypoxic–anoxic stele, and (ii) NCOR a non-selective channel, transporting K+, Na+, and anions, that might be gated in aerobic cells but could open when membranes depolarize during hypoxia–anoxia. Na+ retrieval from the xylem is also shown via a HKT-type Na+ uniport (Munns and Tester, 1980); in a hypoxic–anoxic stele although retrieval would be reduced, some could possibly still occur, but Na+ would then need to move to the aerobic cortex and be compartmentalized in vacuoles (dependent upon transtonoplast H+ difference and Na+/H+ antiport; Munns and Tester, 2008). Assuming –100 mV, in the xylem parenchyma cells and –60 mV in the vessels, this equation shows the free energy gradient for K+ fluxes would be into the xylem provided the concentration in the parenchyma cells is at least five-times greater than in the xylem. That requirement can easily be achieved even at a high xylem K+ concentration of 10 mM, since K+ in the cytoplasm of xylem parenchyma would probably be 100 mM or higher (10-fold greater than in the xylem; Drew et al., 1990). The rate of delivery via this mechanism in roots with a hypoxic–anoxic stele would, however, be substantially lower than in aerobic roots, which have xylem loading. Consistent with the view that transport to the xylem can still occur, even though the loading process in the xylem parenchyma is inhibited, comes from a SKOR-minus mutant (i.e. SKOR being a central component of the loading mechanism); the mutant retained 50% of K+ transport to the shoot compared with the wild type (de Boer and Volkov, 2003). The available data for tissue ion concentrations, ion uptake and xylem transport in roots of cereals (discussed below) support the argument that xylem loading is inhibited more than net ion uptake by O2-deficient roots. After 14 d of N2-flushed treatment, there were only 0–15% decreases of P or N concentrations in either adventitious or seminal roots, compared with reductions of about 30% in the shoots (Buwalda et al., 1988a). These favourable nutrient concentrations in the hypoxic roots are not unique for the high external concentrations used in the experiment by Buwalda et al. (1988a). At a lower external K+ of 0.4 mM, K+ concentration in the shoots was reduced by 45% whereas the reduction was only 20% in adventitious roots, while in seminal roots K+ increased by ;25% (Kuiper et al., 1994). Effects on K+:Na+ selectivity will be discussed in a later section. Similarly to the reduction for other ions, wheat tissue Cl– concentrations were also decreased by ;50% in the shoots, but increased by 20–30% in the seminal roots and by 10– 30% in the adventitious roots, as compared with plants in aerated solution (Buwalda et al., 1988a, Cl– external at 1 mM). The, albeit, small increases of Cl– concentration in the adventitious roots are particularly noteworthy since the Ion transport in hypoxic roots | 51 relative growth rates of these roots was only 10% lower than in the aerated treatment (Barrett-Lennard et al., 1988). The decreased Cl– concentration in the shoots, despite increases in the roots, again support the notion that net ion uptake by the roots is less vulnerable to hypoxia than transport to the shoots. The above-described observations have the defect that the transport to the shoot was through a combination of adventitious and seminal roots, of different gas-filled porosity, and the internal O2 concentrations are either unknown, or based on deductions from measurements with cylindrical O2 electrodes. Such defects were avoided in studies using excised primary roots of maize in a flowing solution at 0.05 mM O2 (Gibbs et al., 1998a; Fig. 3 for radial O2 profile). Cl– was at 0.4 mM, a suitable concentration to study energy-dependent anion uptake. Anion uptake from low external concentrations must require energy since both the root cells and the xylem have negative electrical potentials relative to the medium. In these excised maize roots the amounts of Cl– transported to the xylem were, in % of aerated roots, 60% and 30% at 0.05 and 0.02 mM O2, respectively (Gibbs et al., 1998a). Despite these reductions in total Cl– transport, the remaining flux still required at least one energy-dependent transport step between external solution and the xylem, as shown by the ratios of [Cl–]xylem:[Cl–]medium in the root exudate at a range of O2 concentrations in the medium of: 93 at 0.27 mM O2, 70 at 0.05 mM O2, and 48 at 0.02 mM O2, but only 0.6 in anoxia (Gibbs et al., 1998a). These data are consistent with the development of, at least, a severely hypoxic stele (Fig. 3), which would inhibit the xylem loading step in the xylem parenchyma, but maintain Cl– accumulation in the epidermis and cortex. For these excised roots with the only O2 source in the external solution, sufficient O2 supply to the epidermis is ensured (Fig. 3). The above data for Cl– transport in excised maize roots (Gibbs et al., 1998a) also allow an estimate of residual transport to the xylem when H+-ATPase activity in the stele is diminished; i.e. xylem loading is inhibited. A conservative estimate of this residual ion movement is 30% of that in fully aerobic roots; i.e. the value given in the preceding paragraph for Cl– transport to the xylem at external O2 of 0.02 mM (as % of aerated roots). High ion concentrations in the cortex would provide a substantial diffusion gradient towards the xylem, and since plasmodesmata remain conductive in hypoxic roots (Cleland et al., 1994), cell-to-cell ion movement could occur in the symplast, facilitated by cytoplasmic streaming. Further testing of the hypothesis on the changes in uptake by the root cells and transport to the xylem, when the stele becomes hypoxic–anoxic, would include measuring the initial unidirectional Cl– influx over the first 60 min after supply of 36 – Cl as this represents the influx into the cytoplasm (cf. Tregeagle et al., 2010); the hypothesis predicts this flux would not be greatly affected by changing O2 between 0.27 mM and 0.02 mM in the flowing medium bathing excised roots. K+:Na+ selectivity Stelar hypoxia might, in addition to decreasing nutrient ion fluxes to the shoots, also impact on K+:Na+ selectivity of transport to the shoots. The present review only considers K+:Na+ selectivity for external Na+ at 10 mM or lower (i.e. low concentrations not considered as saline). In hypoxia– anoxia, net K+:Na+ selectivity to shoots is reduced and, as will be shown shortly, this is partly due to a substantial increase of Na+ flow to the shoots. This increase occurs, even though Na+ in aerated solutions is thought to be transported to the xylem by a SOS1 antiport (Munns and Tester, 2008), which presumably gets inhibited during O2 deficiency. We suggest any decrease in intake via this antiport is more than compensated for by opening of the non-selective NORC channels, as these open due to the strong membrane depolarization of xylem parenchyma cells (Pang and Shabala, 2010). Transport to the shoot would be mitigated by Na+ retrieval from the xylem and this possibility will also be discussed. For wheat in external K+ and Na+ both at 0.4 mM, shoot + K :Na+ decreased from 150 to 4.5 after 18 d in N2-flushed solution, while adventitious root K+:Na+ decreased from 10 to 2; both these declines were mainly due to increased Na+ (Kuiper et al., 1994). Similar decreases in K+:Na+ were found for 10–15-d-old maize; for example, at 0.025 mM O2 in the external solution with K+ at 1 mM and Na+ at 10 mM, the ratio decreased from 96 to 7 in the shoots, but only from 19 to 9.5 in the roots (Drew and Lauchli, 1985). At first sight it seems enigmatic that substantial decreases in K+:Na+ occur for the aerenchymatous roots of wheat, as described in Kuiper et al. (1994); i.e. for ion pools which are presumably mainly located in the ‘aerobic cortex’. However, it is possible that a substantial portion of the Na+ pool in the cortical cells was associated with retrieval of Na+ from the xylem. Since the cortical cells would have sufficient energy to sequester the Na+ into vacuoles, the crucial question is whether retrieval from the xylem sap is credible in these hypoxic roots. In roots with a substantial length of ‘aerobic’ stele towards the root–shoot junction (as indicated by models, Armstrong and Beckett, 1987; and shown in Darwent et al., 2003), Na+ retrieval from the xylem would presumably be important in mitigating Na+ flow to leaves (Johanson and Cheeseman, 1983), most likely via HKT transporters of subfamily 1 which function as a Na+ uniport (Munns and Tester, 2008). In most cases, where the root portions near the root–shoot junction still receives sufficient O2 to maintain oxidative phosphorylation in the stele as well as in the cortex, the driving force for Na+ retrieval would be very strong; taking –120 mV in the stelar parenchyma cells and –20 mV in the xylem of these upper portions receiving O2, the flux ratio equation (Nobel, 1974) indicates that Na+ retrieval would stop only when the Na+ concentration in the xylem parenchyma was 52 times higher than in the xylem. With an anoxic stele, potential for Na+ retrieval from the xylem via a HKT uniport is weaker; yet still likely, since the negative potential relative to the xylem of –40 mV (de Boer et al., 1983), will still permit a 5-fold 52 | Colmer and Greenway higher Na+ concentration in the xylem parenchyma than in the xylem before retrieval would cease. In xylem sap of barley, expressed from the cut end of the shoots of control plants grown in supported hydroponics without Na+ added (i.e. ‘background’ Na+ not defined), Na+ concentrations were about 2–3 mM (Shabala et al., 2010) and these concentrations would presumably decrease when there was rapid transpiration. So, taking reasonable concentrations of 0.5–2.5 mM Na+ in the xylem, Na+ retrieval would cease only when the symplast concentration reached 2.5–12.5 mM, these values are above the expected level if Na+ withdrawn from the xylem moves to the cortical cells and is sequestered into vacuoles. This suggestion needs further testing with focused experiments to elucidate for hypoxic roots whether the Na+ accumulated is derived straight from the medium, or by entry and subsequent retrieval of Na+ from the xylem. Summing up, the data reviewed here on O2 profiles, respiration, and ion transport in roots, some of which still need more rigorous testing, are all consistent with the dominant influence of development of a hypoxic–anoxic stele under hypoxia, rather than the result of downregulation of metabolism involving an O2-sensing system (as suggested by Geigenberger, 2003; Gupta et al., 2009). The one observation which does not fit well with the model of an ‘aerobic cortex’ and ‘hypoxic–anoxic stele’ is the depolarization by 34 mV in the cortical cells of wheat upon exposure to 0.02–0.03 mM O2 (Zhang and Tyerman, 1997), when these cells can be expected to be still ‘aerobic’, i.e. depolarization in the still aerobic cortex could be used as an argument in favour of the down-regulation of metabolism. However, depolarization in the cortex might result from ‘electrical coupling’, as the expected depolarization in the stele might be conveyed to cortical cells. This is possible even though the coupling ratio between cortical cells in the wheat roots was only 6% (Zhang and Tyerman, 1997), as the possible quantitative importance of coupling can not be readily gauged from the coupling ratio alone (Solocar, 1977). Ion uptake by seminal and adventitious roots of wheat in O2-deficient media Ion uptakes by seminal and adventitious roots of wheat in N2-flushed versus aerated solutions were measured separately, in split-root experiments (Kuiper et al., 1994). The net uptakes (root fresh weight basis), expressed as a percentage of the aerated controls, were 50% for K+ and 35% for NO 3 in seminal roots, and 82% and 55% in adventitious roots (average for 26 d and 33 d in N2-flushed solution; Kuiper et al., 1994). This difference between root types is less than expected in view of the much larger gas-filled porosity of 14% in the adventitious roots than the 3% in seminal roots (reported for the same cultivar by BarrettLennard et al., 1988). The seminal roots presumably benefited from the low O2 concentration of 0.003 mM in the N2-flushed solution, probably enabling respiration at least in the epidermis and thus ion uptake by this outermost cell layer. By contrast, when in stagnant agar nutrient solution, the lack of turbulence would negate O2 supply from the nutrient solution and hence the internal O2 supply will solely depend on diffusion via the aerenchyma, then net uptake of K+ and P by seminal roots (root fresh weight basis), never exceeded 20% of the aerated controls (Wiengweera and Greenway, 2004). This low uptake occurred even though K+ concentration in the shoots would have been 35% lower than in the aerated plants (Wiengweera et al., 1997). By contrast, in the adventitious roots, O2 supply to the epidermis was demonstrated by ROL (Barrett-Lennard et al., 1988) and, accordingly, net K+ uptakes by the adventitious roots, as a percentage of the aerated controls, were 70% between 4–8 d and 115% during the final 8–12 d (Wiengweera and Greenway, 2004). Thus, overall, in media without any O2 supplied externally, adventitious roots are capable of greater ion transport than seminal roots, presumably owing to the higher porosity enabling more O2 movement from the shoot to the root to sustain respiration in the adventitious roots. Surprisingly, measurements of O2 and ion uptake rates for the same roots, at various O2 supply, are generally lacking. The exception being the pioneering study of barley seedling roots in hypoxia (0.02 mM O2, 0.05% agar solution) by Pang et al. (2006) using ion-specific and O2 microelectrodes. At 10 mm behind the tip of 70 mm long roots, a position just behind the elongation zone, O2 influx was reduced by 80% in a hypoxia-tolerant cultivar and by 93% in a hypoxia-intolerant cultivar, as compared with rates when bulk medium O2 was 0.28 mM (Pang et al., 2006). It is not clear why the varieties differed in O2 uptake; root lengths and diameters were the same, and although root porosity values were not given, potential differences in internal O2 supply from the shoots were probably not a factor, since excised roots showed similar responses as intact roots (Pang et al., 2006). No response curve was determined for O2 uptake versus O2 concentration. Net K+ uptake from 0.2 mM external K+ concentration (also at 10 mm behind the root tip) was reduced by hypoxia by 35–65% in the intolerant cultivar, but was not affected in the tolerant cultivar (Pang et al., 2006). K+ net uptake by this tolerant cultivar at 0.02 mM O2 was 2.1 lmol g1 fresh weight h1, essentially the same as for seminal roots of wheat in turbulent solutions at 0.003 mM O2 (Kuiper et al., 1994); the Pang et al. (2006) data were converted by us from surface area to a fresh weight basis (average of Figs 6 and 7 in Pang et al., 2006). The persistence of a reasonably high net uptake in the barley was despite a reduction of 80% of O2 uptake in stagnant solution at 0.02 mM external O2 compared with that by roots in stagnant air-saturated solution. Net H+ efflux in the mature zone was changed into a net influx in the presence of vanadate, the inhibitor of the plasma membrane H+-ATPase. Pang and Shabala (2010) discussed these findings as being consistent with the possible engagement of the H+-ATPase under anoxia, citing the case for anoxic maize root tips (Xia and Roberts, 1996). However, the two situations are quite different, the barley Ion transport in hypoxic roots | 53 roots received O2 (see above) whereas the maize root tips were in anoxia. O2 uptake by the barley roots would have enabled oxidative phosphorylation in the epidermis and perhaps also in the outer cortical cells, so accordingly, ATP should have been available to the H+-ATPases in the root periphery. Although the outer cell layers would have received some O2, cells towards the interior would presumably have been severely hypoxic or even anoxic. Recovery of nutrient transport in O2-deficient roots upon re-aeration Recovery of nutrient uptake and transport to the xylem upon re-aeration following anaerobiosis has been evaluated on only a few occasions. To our knowledge, only one experiment has evaluated net ion uptake in the first hours after re-aeration of previously hypoxic wheat roots (Kuiper et al., 1994); in this experiment it took ; 4 h of re-aeration before net K+ uptake accelerated for both seminal and adventitious roots. These lags indicate that the membrane transport processes in the roots exposed to anaerobic solution were impaired, and not simply suffering a simple energy limitation, so that repairs were needed; whether the lags were associated with general metabolism (e.g. lag in recovery of mitochondria), to membranes, or to the ion uptake machinery, remains to be elucidated. The lag in recovery following re-aeration might be associated with the production of oxygen radicals after re-aeration, for example, 1–10 mM H2O2 caused pronounced membrane depolarization and massive K+ effluxes in roots of four barley cultivars (Chen et al., 2007). Kuiper et al. (1994) also assessed the recovery of K+ and NO 3 net uptakes during the first 23 h of re-aeration; rates were 1.3–3.5-fold higher for both seminal and adventitious roots, compared with roots that continued in the N2-flushed solution. In contrast to wheat, roots of rice grown in N2-flushed solution had, at most, minor reductions in ion uptake compared with continuously aerated plants (John et al., 1974). Somewhat unexpectedly, upon transfer of rice from N2-flushed to aerated solutions during the first 2 h there were substantial ‘overshoots’ (i.e. increases above rates in continuously aerated plants) for P, Cl–, and K+ uptakes by roots and transport to the shoots (John et al., 1974; rates determined by tracer uptake). Confirmation of these responses is needed using more refined techniques, but the ‘overshoots’ imply that, in rice, there may be acclimative changes in nutrient-transport systems, in addition to the well-known enlargement of aerenchyma. More studies of recovery following re-aeration are needed, using techniques with high temporal resolution (e.g. unidirectional influxes using isotopes cf. Davenport et al., 2005; ion-specific microelectrodes, cf. Pang et al., 2006). Use of elevated O2 around the shoots would enable recovery to be assessed with time-course measurements continuing in stagnant agar (i.e. maintaining the same conditions external to the roots, especially the unstirred medium for the microelectrode net flux measurements). No experiments to examine the influence of improved internal aeration on nutrient uptake by roots of cereals are available, but in young alder trees illumination of the stem improved O2 supply to the roots (Armstrong and Armstrong, 2005b); and the improved O2 status restored + net uptake of NO by roots in N2-flushed 3 , P and K solution above the rates in aerated solution (Grosse and Meyer, 1992). The improvements due to improved O2 supply in this experiment with alder seem in little doubt, but the extent of the restoration of nutrient uptake remains uncertain because of the high variability of the data by Grosse and Meyer (1992). Conclusions and perspectives Improved root growth and functioning will be required to alleviate shoot nutrient deficiencies, a main cause for reduced growth of wheat, barley, and maize in anaerobic solutions and very likely also in many waterlogged soils. Improved root functioning should also aid tolerance of ‘soil toxins’ in anaerobic soils, such as reduced metal ions and salinity, as well as promote recovery following transient waterlogging. Priority traits for improving the performance of wheat roots in waterlogged soils would be an ability to develop aerenchyma in seminal roots to prevent their death, as well as a larger volume of more efficient aerenchyma in adventitious roots. Another beneficial trait would be cubic cell packing in the root cortex to increase porosity of nonaerenchymatous tissue, as occurs in rice, whereas the three dryland cereals have hexagonal cell packings (few genotypes examined). Stelar hypoxia, which inhibits the sophisticated system of xylem loading, may not be alleviated merely by more aerenchyma but could be avoided with a smaller radius stele. In addition to improved internal aeration, other traits might also improve the functioning of hypoxic roots, such as protection against free radicals of oxygen. Oxidative damage might occur after cell damage (Smirnoff, 1995), so lipid peroxidation associated with membrane damage is possibly a secondary effect, nevertheless, studies of animal cells indicate that radicals formed can further accelerate the pathology (Arthur et al., 2008). So antioxidant systems should have ameliorating effects and might be important during recovery, which would be particularly relevant to survival following the transient waterlogging of seminal roots of low gas-filled porosity. Genetic differences in reactive-oxygen scavenging systems were important during the recovery of rice following de-submergence (Ella et al., 2003). A broad programme exploiting differences within and across species is needed to combine the necessary, complex characteristics; trait screening, physiological-based breeding and selection including development and use of molecular markers (Setter and Waters, 2003), and, where possible, wide hybridizations and cytogenetic approaches to make use of tolerant ‘wild’ relatives (Colmer et al., 2006). One of the exciting challenges for future physiological research is to elucidate more fully the functioning of roots with the intriguing combination of an aerobic cortex 54 | Colmer and Greenway (epidermis and cortex with sufficient O2 for oxidative phosphorylation) and a hypoxic–anoxic stele. The persistence of substantial, albeit reduced, ion transport to the xylem of roots with a hypoxic–anoxic stele might be viewed as a primitive system before evolution of the sophisticated system of xylem loading. The postulated different concentration gradients between epidermis and xylem may be tested using X-ray microanalysis (e.g. for salinity, see Lauchli et al., 2008). Further, physiological co-operation of the aerobic cortex and hypoxic–anoxic stele seems likely, such as consumption in the cortex of products of anaerobic metabolism in the stele and, crucially, a possible transfer of high energy compounds produced in the aerobic cortex to the hypoxic–anoxic stele (suggested by Gibbs and Greenway, 2003). Physiological experiments need to be more focused and less descriptive, using some techniques which have already shown promise, such as measurements of both net uptake by the root cells and transport to the xylem, while measuring the trans-root electrical potential and O2 profiles across roots. Further net flux measurements along roots, using ion-selective microelectrodes with concurrent O2 fluxes also measured, would contribute to the elucidation of ion transport and K+:Na+ selectivity as affected by hypoxia. Recovery following re-aeration (or elevation of O2 supply around shoots) should also be included in future experiments, with measurements taken as soon as possible after the O2 supply is increased. Such experiments will address whether transport activity is merely limited by low energy associated with low O2 supply, or also by other lesions in metabolic capacity including transport capacity or loss of membrane integrity. the stele than in the cortex plus epidermis, a value based on the ratio of O2 uptake rates in the stele versus the cortex (Armstrong and Beckett, 1987). Then, the fraction of the nucleotide pool in the cortex plus epidermis¼(0.7631)/[(0.7631)+(0.2435.5)]¼0.36, and for the stele¼(0.2435.5)/[(0.7631)+(0.2435.5)]¼0.64. Thus the ATP:ADP in a root segment as a whole with a hypoxic–anoxic stele, becomes (0.3635.5)+(0.6430.66)¼2.4. The assessment of the nucleotide concentration in stele versus cortex is not sure, however, even if we take the unlikely high value of 10-times higher concentration in the stele than cortex, and repeating the calculation above, then the ATP:ADP is 1.8; i.e., not all that much lower than when assuming a 5.5-times difference. Acknowledgements Armstrong W, Beckett PM, Justin SHFW, Lythe S. 1991. Modelling, and other aspects of root aeration by diffusion. In: Jackson MB, Davies DD, Lambers H, eds. Plant life under oxygen deprivation. The Hague: SPB Academic Publishing, 267–282. For incisive criticisms on a final draft: Sergey Shabala for the whole review; Helen Bramley for the water transport section; Bill Armstrong on the hypoxic–anoxic stele; and Natasha Teakle for useful comments on the whole review. The Grains Research and Development Corporation in Australia is thanked for supporting research by TDC on waterlogging tolerance in wheat and wild species in the Triticeae. Appendix Here we assess that the ratio of ATP-to-ADP (i.e. ATP:ADP) in a mature root segment of maize, with an anoxic stele and ‘aerobic cortex’ that still receives sufficient O2 for oxidative phosphorylation, will be in the range 2.4 to 1.8. This assessment is based on the following values for maize: (i) proportion of the root occupied by stele and cortex are 0.24 and 0.76 (Gibbs et al., 1998); (ii) ATP:ADP in aerobic tissues of 5.5 and in anoxic tissues of 0.66 (Drew et al., 1985). These values are for roots exposed to 1 mM NaF, since Drew et al. (1985) used this inhibitor of glycolysis in addition to an anoxic medium in their studies with roots of intact plants; (iii) assumed values for proportions of the nucleotide pool contained in the cortex and stele, based on their proportional volumes and expected differences in cytoplasm content. As an example, we assume 5.5-times higher nucleotide concentration in References Armstrong J, Armstrong W. 2005a. 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