Plant Physiological Adaptations to the Massive Foreign Protein Synthesis Occurring in Recombinant Chloroplasts[W] Julia Bally, Marie Nadai, Maxime Vitel, Anne Rolland, Raphael Dumain, and Manuel Dubald* Bayer CropScience, Bioscience, F–69263 Lyon cedex 09, France (J.B., M.N., M.V., A.R., R.D., M.D.); and Centre National de la Recherche Scientifique-Bayer CropScience Joint Laboratory, UMR 5240, F–69263 Lyon cedex 09, France (J.B.) Genetically engineered chloroplasts have an extraordinary capacity to accumulate recombinant proteins. We have investigated in tobacco (Nicotiana tabacum) the possible consequences of such additional products on several parameters of plant development and composition. Plastid transformants were analyzed that express abundantly either bacterial enzymes, alkaline phosphatase (PhoA-S and PhoA-L) and 4-hydroxyphenyl pyruvate dioxygenase (HPPD), or a green fluorescent protein (GFP). In leaves, the HPPD and GFP recombinant proteins are the major polypeptides and accumulate to higher levels than Rubisco. Nevertheless, these engineered metabolic sinks do not cause a measurable difference in growth rate or photosynthetic parameters. The total amino acid content of transgenic leaves is also not significantly affected, showing that plant cells have a limited protein biosynthetic capacity. Recombinant products are made at the expense of resident proteins. Rubisco, which constitutes the major leaf amino acid store, is the most clearly and strongly down-regulated plant protein. This reduction is even more dramatic under conditions of limited nitrogen supply, whereas recombinant proteins accumulate to even higher relative levels. These changes are regulated posttranscriptionally since transcript levels of resident plastid genes are not affected. Our results show that plants are able to produce massive amounts of recombinant proteins in chloroplasts without profound metabolic perturbation and that Rubisco, acting as a nitrogen buffer, is a key player in maintaining homeostasis and limiting pleiotropic effects. The genetic modification of the plastid genome was achieved in higher plants more than 15 years ago (Svab et al., 1990; Svab and Maliga, 1993). This recombinant technology presents distinctive features that are very attractive from a biotechnological perspective. The most attractive of these features is the potential for extremely high expression of the transgene in plastid transformants, up to 70% of total soluble proteins (tsp) in leaves for an antibacterial lysin (Oey et al., 2009). A variety of pharmaceutical proteins have also been produced at very high levels in transgenic chloroplasts (Daniell et al., 2004; Daniell, 2006). The other characteristics of the technology have been extensively reviewed recently (Maliga, 2004; Bock, 2007; Verma and Daniell, 2007; Dubald et al., 2008) and concern (1) the targeted insertion of the transgenes, (2) the possibility to engineer more easily complex pathways using polycistronic vectors, (3) the apparent absence of epigenetic regulation, and (4) the natural confinement of * Corresponding author; e-mail manuel.dubald1@bayercropscience. com. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantphysiol.org) is: Manuel Dubald ([email protected]). [W] The online version of this article contains Web-only data. www.plantphysiol.org/cgi/doi/10.1104/pp.109.139816 1474 the transgenes as a result of the almost exclusive maternal inheritance of these organelles. Chloroplasts have an extraordinary capacity to synthesize and accumulate foreign proteins. Curiously, very little attention has been devoted to evaluate and analyze the consequences on the plant physiology of this significant metabolic burden. In most reports, which include an insecticidal toxin expressed at 46% tsp (De Cosa et al., 2001), or a GFP expressed at 38% tsp (Yabuta et al., 2008), no obvious phenotypic defect, such as growth retardation, has been observed in plastid transformants. When phenotypic modifications were noted, these were directly linked to the specific properties of the expressed transgenes (Tregoning et al., 2003; Magee et al., 2004; Ruiz and Daniell, 2005; Chakrabarti et al., 2006; Hasunuma et al., 2008; Tissot et al., 2008). Only in the case of lysin was the hyperexpression of the recombinant protein reported to limit plant development by exhausting the protein synthetic capacity of chloroplasts (Oey et al., 2009). A number of issues are therefore still very unclear: (1) are the recombinant proteins produced on top of the resident proteins, meaning that plants naturally have the capacity to make significantly more proteins, at least if a sink is provided? Otherwise, (2) are they produced at the expense of all, or of only some, resident proteins, implying that these resident proteins are normally synthesized in excess? And (3), how are resources allocated between resident and recombinant proteins Plant PhysiologyÒ, July 2009, Vol. 150, pp. 1474–1481, www.plantphysiol.org Ó 2009 American Society of Plant Biologists Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. How Plants Cope with Massive Recombinant Protein Synthesis when the cell budget is reduced, in particular when there is a limitation in nitrogen supply? Plastid transformants expressing recombinant proteins at a high level provide a unique material to address these fundamental questions. To draw generic conclusions, we have for the first time, to our knowledge, studied in parallel transgenic tobacco (Nicotiana tabacum) lines expressing recombinant proteins of completely different nature: (1) a hydroxyphenyl pyruvate dioxygenase (HPPD) from Pseudomonas (Dufourmantel et al., 2007), which participates in plants in the synthesis of plastoquinones and is the target of various herbicides (Matringe et al., 2005); (2) an alkaline phosphatase from Escherichia coli (Bally et al., 2008) with no known substrate in chloroplasts, targeted to the thylakoids (PhoA-L) or expressed at a lower level in the stroma (PhoA-S); and (3) a GFP, with no enzymatic function, accumulating strongly in the stroma. We have started investigating the impact that massive transgene expression in chloroplasts may have on plant development, photosynthesis, leaf proteome, chloroplast transcriptome, and amino acid composition. RESULTS Chloroplast Expression Vectors and Transgenic Tobacco Lines Tobacco plants of generation T1 obtained by selfing and corresponding to four different vectors (Fig. 1) were selected for analysis. These vectors target the transgenes encoding alkaline phosphatase (PhoA-S or PhoA-L), HPPD, or GFP to the same integration site between the Rubisco large subunit (rbcL) and acetylCoA carboxylase subunit D (accD) chloroplast genes. The coding regions are under the control of the strong tobacco plastid PSII subunit D1 (psbA) gene promoter, including its complete 5# untranslated region, except for GFP. The latter is expressed from a dicistronic cassette driven by the corn (Zea mays) 16SrDNA plastid promoter (Prrn) and the ribosome binding site region from phage lambda gene 10 (Ye et al., 2001). The generation of homoplasmic tobacco lines and their analysis at the DNA and protein levels has already been documented for HPPD (Dufourmantel et al., 2007) and PhoA (Bally et al., 2008). Concerning pCLT554, GFP was recoded to better fit the tobacco plastid codon usage, and we selected for analysis one T0 transformant that displayed under UV a uniform and strong GFP signal in leaves, localized in the chloroplasts. The T1 progeny of this transformant uniformly expressed both antibiotic resistance and GFP fluorescence (Supplemental Fig. S1) as expected for a homoplasmic tobacco plastid transformant. Normal Growth with Diminished Rubisco Levels in Hyperexpressing Lines The growth of the transgenic lines (T1 generation) was carefully followed in the greenhouse, and no Figure 1. Recombinant plastome genetic maps. A, Targeted tobacco plastid genome region. B, Transformation vectors. LHRR and RHRR are the left and right plastid recombination regions, respectively, present in all transforming vectors. RBS, Ribosome binding site; g10L, phage lambda gene 10; aadA, spectinomycin resistance gene. All promoters and terminators were derived from the tobacco plastid genome except in pCLT554 (Zm, corn). phenotypic difference was observed compared to wild-type tobacco during the vegetative phase (Fig. 2, A–C). Accordingly, no variation of the maximum photochemical efficiency of PSII in the dark-adapted state (Fv/Fm; 0.73–0.76) or of the effective quantum yield (Fig. 2D) was measured by fluorometry on leaves of 3-month-old plants. Expression of the recombinant proteins in mature leaves was analyzed by SDS-PAGE and Coomassie Brilliant Blue staining (Fig. 3A). Rubisco large (LSU) and small (SSU) subunits are the prevalent polypeptides in wild-type tobacco. In contrast, the HPPD and GFP recombinant proteins are expressed at an extraordinary high level and represent in the transgenic leaves the major protein. We have scanned the gel and quantified by densitometry the four recombinant proteins, LSU, and SSU. The HPPD and GFP proteins are expressed at a level close to that of LSU in wild-type tobacco (Fig. 3B) and represent 30% to 40% tsp. When the LSU and SSU amounts are plotted against the level of recombinant protein, there is a clear negative correlation (Fig. 3B). Over this range of values, the LSU to SSU ratio remains always close to 3 to 4, which matches the ratio of their respective Mrs and is in accordance to their equal stoichiometric contribution in Rubisco. This shows that the expression of the nucleus-encoded SSU remains tightly coupled to the expression of the plastid-encoded LSU, suggesting that the plastid-to-nucleus retrograde signaling pathways (Nott et al., 2006) are not perturbed. The level of many other proteins is visibly constant, suggesting that the down-regulation of Rubisco is Plant Physiol. Vol. 150, 2009 1475 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. Bally et al. Figure 2. Phenotype of transgenic lines. Comparison of T1 generation growth 2 weeks (A), 5 weeks (B), and 3 months (C) after sowing for the wild type (WT; 1) and for recombinant lines expressing PhoA-S (2), PhoA-L (3), GFP (4), and HPPD (5). D, Comparison of effective PSII photochemical quantum yields of 3-month-old plants. Error bars represent the SD calculated for each category from two leaves with three independent measurements per leaf. specific. At the flowering stage, a specific difference was observed in flowers of plants expressing HPPD, which systematically lacked the usual pink pigmentation due to anthocyanins (Supplemental Fig. S2A). The plastid transgenes encoding HPPD, GFP, and PhoA-L are strongly expressed in the chromoplasts of tobacco corolla (Supplemental Fig. S2B), albeit at a lower level than in leaf chloroplasts. Plastid Resident Transcript Levels Are Not Affected in Transgenic Lines High-level transgene expression could negatively impact the plastid resident transcriptome and be responsible for the depressed level of Rubisco. A semiquantitative reverse transcription (RT)-PCR analysis was carried out on total RNA extracted from mature leaves at the same stage during the day. Sets of specific primers, amplifying unique fragments, were selected to follow in parallel the recombinant RNAs and nine resident transcripts synthesized either by the plastidencoded polymerase (PEP) and/or by the nuclearencoded polymerase. The results (Supplemental Fig. S3) show that the recombinant RNAs are particularly abundant and that there is no drastic change in the level of any of the analyzed plastid resident transcripts. There is no variation in the amount of rbcL transcripts despite the large variation reported above at the protein level (Fig. 3). This is consistent with the fact that translation initiation is considered as the limiting step in chloroplast protein synthesis, and there is generally a poor correlation between transcript and corresponding protein levels (Eberhard et al., 2002). It is also noteworthy that (1) there is no up-regulation of accD transcripts, a gene poorly transcribed by nuclear-encoded polymerase that flanks the strongly PEP-transcribed transgenes at their 3# ends; and (2) there is no variation at the RNA level for psbA despite the use of its promoter and 5# untranslated region to drive the expression of recombinant PhoA and HPPD. 1476 Plant Physiol. Vol. 150, 2009 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. How Plants Cope with Massive Recombinant Protein Synthesis is observed for plants treated with 0.2 mM ammonium nitrate. Whatever the nitrogen supply, even at the suboptimal 2 mM concentration, there is no difference in growth between transgenic lines or versus wildtype tobacco. Tobacco Leaf Protein Amino Acid Composition under Various Nitrogen Regimes Figure 3. Protein profiles of leaves after SDS-PAGE separation. A, Coomassie Brilliant Blue staining of protein extracts (20 mg) from wildtype tobacco (1) and from plants expressing HPPD (2), PhoA-S (3), PhoA-L (4), and GFP (5). The position of the recombinant proteins is indicated in the respective lanes. B, Correlation between Rubisco (LSU in blue; SSU in red) and recombinant proteins expressed in arbitrary units (AU). WT, Wild type. Limiting Nitrogen Supply Does Not Unveil Any Growth Penalty Under normal growing conditions, we observed no difference in the growth and development of tobacco plants expressing extremely high levels of GFP or HPPD, despite their depressed level of Rubisco. We decided to investigate this situation in conditions of limited nitrogen and to analyze how resources are then allocated between resident and recombinant proteins. Three-week-old wild-type and transgenic seedlings from generation T1, sown in soil, were transplanted on vermiculite and drenched every 2 to 3 d with a nutritive solution containing ammonium nitrate as the sole source of nitrogen. Four different concentrations of ammonium nitrate were provided, from 0 to 20 mM, which is the concentration used in standard plant tissue culture media (Murashige and Skoog, 1962), and the experiment was followed over 5 weeks before leaves were harvested for analysis. Five days after the start of the experiment, a positive effect on growth is already visible on all lines at the highest nitrogen dose (Fig. 4A-1). After 5 weeks (Fig. 4A-2), plants submitted to complete nitrogen deprivation have not grown at all and have become chlorotic. Very limited development After 5 weeks, proteins were extracted from leaves of plants shown on Figure 4A-2 and separated by SDSPAGE (Fig. 4B). At 20 mM ammonium nitrate, providing nitrogen in excess, the pattern is very similar to that of plants grown in soil (Fig. 3). Remarkably, when the supply of nitrogen is limited (below 2 mM), the amount of Rubisco (LSU and SSU) is very strongly reduced, whereas in all cases, the recombinant proteins accumulate at least at the same level as under optimal conditions. PhoA-L, expressed at a much lower level than HPPD or GFP, becomes the major leaf polypeptide, exceeding largely LSU at 2 mM and below. Even PhoA-S, which is normally completely masked by LSU, becomes clearly visible under those conditions (Fig. 4B). One question that arises is whether the recombinant proteins are synthesized in addition to the resident proteins or if they are produced at their expense. Leaves were harvested and the total amino acid content (free + protein-bound) was determined for each line and at each nitrogen level. The total amino acid content is positively correlated to the supply in ammonium nitrate, and whatever the level of nitrogen, transgenic plants that express recombinant proteins clearly don’t have an increased total content in amino acids (Supplemental Fig. S4A). The amino acid composition of transplastomic and wild-type leaves from plants grown under different conditions of nitrogen supply was then compared (Supplemental Fig. S4B), showing that most amino acids remain quantitatively stable, the strongest variation being noted for Lys, which increases in proportion with the level of nitrogen. DISCUSSION Our objective was to investigate how plants cope with the massive expression of an alien gene, a situation frequently encountered with plastid transformants. Indeed, two of the transgenic tobacco lines that we have analyzed express recombinant proteins (HPPD and GFP) in chloroplasts at spectacular high levels, above those of Rubisco, which is normally the most abundant leaf protein, representing up to 60% of the soluble proteins in C3 plants (Spreitzer and Salvucci, 2002; Hirel and Gallais, 2006). Rubisco has a dual role, first in carbon fixation, and second as a potential dynamic nitrogen store, since it is present in excess versus the amount needed to fulfill the photosynthetic requirements (Irving and Robinson, 2006; Plant Physiol. Vol. 150, 2009 1477 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. Bally et al. Figure 4. Effect of nitrogen supply on growth and proteome. A, Tobacco seedlings of the wild type and of the four different transgenic lines 5 d (1) or 5 weeks (2) after treatment with nutritive solutions containing 0 to 20 mM ammonium nitrate as unique nitrogen source. B, SDS-PAGE and Coomassie Brilliant Blue staining of leaf proteins (20 mg) harvested after 5 weeks of treatment. WT, Wild type. Feller et al., 2008). The nitrogen store function of Rubisco has been essentially documented during leaf senescence, when proteins are remobilized and translocated for seed filling (Murchie et al., 2002; Houtz and Portis, 2003). Hyperexpressing plastid transformants provide an interesting model for studying protein homeostasis, Rubisco turnover, and the plant cell nitrogen budget. We have found that total amino acid content of leaves overexpressing HPPD or GFP is unchanged versus the wild type, showing that the synthesis of the recombinant proteins occurs at the expense of the resident proteins. Our data show that this concerns particularly Rubisco, the major nitrogen and amino acid pool in plant cells. The reduced level of this enzyme could be the result of a down-regulated synthesis or of a higher turnover. The latter hypothesis is more likely, based on the literature related to enhanced and programmed Rubisco degradation during senescence or under environmental stress (Houtz and Portis, 2003; Hirel and Gallais, 2006; Feller et al., 2008). The same compensation between Rubisco and the recombinant protein(s) also occurs very clearly for the high-level transient leaf expression system, based on viral replicons (Marillonnet et al., 2005). The buffering role of Rubisco also occurs on wild-type plants under conditions of limited nitrogen (Fig. 4). Interestingly, a recent large-scale proteomic analysis performed on nuclear transgenic rice (Oryza sativa), expressing a human therapeutic protein in the endosperm, has also reported a decrease in endogenous storage proteins (Luo et al., 2009). A scenario can also be envisaged at the RNA level, where the specific down-regulation of Rubisco would result from the presence of the tobacco rbcL terminator in the transgenes cassettes (Fig. 1). High-level expression of the transgenes could compete for RNA binding factors essential for the stability or translation of the rbcL transcript. This has been reported for the resident tobacco chloroplast clpP gene when transgenes incorporated the 5# untranslated region of this gene (Kuroda and Maliga, 2002). Nevertheless, this scenario is not compatible with our finding that the steady-state transcript levels of recombinant PhoA-S or PhoA-L are similar to those of GFP or HPPD (Supplemental Fig. S3) but do not strongly impact the level of Rubisco (Fig. 3). 1478 Plant Physiol. Vol. 150, 2009 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. How Plants Cope with Massive Recombinant Protein Synthesis We also investigated whether there is some obvious alteration of the chloroplast transcriptome in tobacco plastid transformants, as a consequence of high-level transgene expression or of competition for transcription or messenger stabilizing factors. The transcript levels of nine plastid resident genes transcribed either by the plastid-encoded and/or nuclear-encoded polymerase (for review, see Hess and Börner, 1999) have been followed by quantitative RT-PCR. To our knowledge, this type of analysis has not been reported yet in the literature for any higher-plant plastid transformant. We have found that the transgenes driven by either the psbA (PhoA-S, PhoA-L, and HPPD) or fulllength Prrn (GFP) have a very high mRNA steady state, only two to four times lower than the resident psbA mRNA. No drastic or general modification has been observed for any of the nine analyzed resident transcripts. We have followed the development of transgenic lines expressing PhoA-S, PhoA-L, GFP, and HPPD and compared it to wild-type tobacco. No visible difference in leaf pigmentation, growth rate, flowering time, and PSII quantum yields has been noted, despite the massive accumulation of HPPD or GFP, accompanied by a sharp drop of Rubisco in those lines. The absence of penalty on plant development of such a reduction is surprising but in line with results from past experiments using antisense RNA to down-regulate the rbcS gene. These studies have shown that a visible phenotype is only observed in very severely impaired lines (Quick et al., 1991; Stitt et al., 1991; Hudson et al., 1992). Our results contrast with the recent report mentioning an exhaustion of the protein synthetic capacity of the chloroplast and a strongly impaired growth in tobacco lines expressing massively a phage lytic protein (Oey et al., 2009). This could be the consequence of this lysin’s extraordinary expression level (70% tsp). Nevertheless, this general statement was extrapolated only from the observed down-regulation of Rubisco and could also result from a toxic effect of the recombinant protein. A global exhaustion of the chloroplast protein synthetic capacity should also negatively impact the level of the PEP, and therefore the level of transcripts produced by PEP, at least if the amount of this enzyme limits transcription under normal conditions. This was not observed in this study for the rbcL transcript though (Oey et al., 2009). Our results show that at least up to a recombinant protein expression level of 30% to 40% tsp there is no penalty for plant growth in our greenhouse conditions. Up to that expression level also, there is no impact on PSII quantum yield measurements, showing that the biosynthesis of the various plastid-encoded subunits of this photosystem is not affected as well as the rest of the electron transport chain and the major Calvin processes. The quantitative drop of Rubisco is possibly compensated for by a higher specific activity that is dependent on its catalytic chaperone, Rubisco activase (Parry et al., 2003; Portis, 2003). Differences in growth could possibly be detected under other environmental conditions where the photosynthetic activity of Rubisco could be limiting, such as higher light or temperature stress, since a reduced growth rate has for instance been reported for antisense tobacco lines having ,40% of normal Rubisco level (Jiang and Rodermerl, 1995). It could also be anticipated that under conditions of limited nitrogen supply, the cost of the massive synthesis of a recombinant protein would become apparent and differences in growth observed. This was not the case in our conditions over a 5-week period, whatever the supply in ammonium nitrate (from 0–20 mM). Growth of tobacco seedlings was affected in proportion to the severity of the nitrogen deficiency but independent of the genetic background. This illustrates the extraordinary metabolic plasticity of plant cells that can adapt under various conditions to the additional important sink represented by the recombinant proteins. At the molecular level, after 5 weeks, the major modification that was observed in the protein profile is a further specific reduction in the amount of Rubisco allowing visualization on Coomassie blue-stained one-dimensional gels with recombinant PhoA-S and PhoA-L (50 kD), which are normally masked by the major 53-kD large subunit of Rubisco. PhoA-L even becomes the most abundant leaf protein when the nitrogen supply is limited, and the levels of GFP and HPPD then clearly exceed 50% of the leaf soluble proteins. The proteolytic degradation machinery of plant cells is known to regulate the chloroplast protein composition and Rubisco turnover (Feller et al., 2008) and seems therefore less able to deal with any of the foreign proteins (HPPD, Pho-A, or GFP). As a consequence, these products accumulate to higher relative levels. This finding has potential interest for molecular farming applications. A nitrogen starving step applied on transgenic plant material before protein extraction could increase the relative proportion of the recombinant protein of interest and therefore facilitate its purification. The total amino acid composition (free and proteinbound) of leaves of plantlets grown hydroponically at different nitrogen levels has been measured. The total leaf amino acid content per fresh weight drops strongly when ammonium nitrate is limiting, but there is no difference between transgenic lines or versus the wild type. Also, despite the fact that under nitrogen deficiency the recombinant proteins often become by far the predominant leaf protein (HPPD and GFP), the global amino acid composition remains rather constant whatever the growing conditions. The reason for this remarkable stability is probably due to the fact that the amino acid composition of the expressed recombinant proteins is not strikingly different from those of Rubisco or wild-type leaves (Supplemental Fig. S4C). This may in turn also explain why these recombinant proteins can be expressed at such a high level by plant cells. The massive expression of a transgene in chloroplasts surprisingly has a rather low impact on plant Plant Physiol. Vol. 150, 2009 1479 Downloaded from on June 17, 2017 - Published by www.plantphysiol.org Copyright © 2009 American Society of Plant Biologists. All rights reserved. Bally et al. development and physiology. The recombinant proteins are synthesized at the expense of resident proteins, and Rubisco works in this respect as the major source of nitrogen and of protein homeostasis. Interestingly, foreign proteins proportionally accumulate at even higher levels when the nitrogen budget is limited, escaping somehow from the programmed plant degradation machinery. We have detected only limited changes on the one-dimensional protein profile of leaves, the effective and maximum quantum yields of PSII, the amino acid composition, and the transcript level of plastid resident genes. This article provides a set of data on how plants cope globally with high-level transgene expression in leaves. We are currently proceeding to a more detailed leaf proteomic analysis to determine if proteins other than Rubisco are affected by high-level recombinant protein expression. The consequences on other parts of the plant metabolism under different growing conditions also merit further investigation. tions and was reverse transcribed using random hexamer primers and the Thermoscript RT-PCR system (Invitrogen). The amplification of the different target cDNAs was performed simultaneously with a LightCycler (Roche) using the LightCycler FastStart DNA MasterPlus SYBR Green I kit (Roche Applied Science). Each sample was run in triplicate starting with 5 ng of cDNA, and very little variation was observed between repetitions. The amplification conditions were the following: 10 min activation step at 95°C for one cycle, 10 s of denaturation at 95°C, 5 s of annealing of primers at 60°C, and 10 s of elongation at 72°C, for 45 cycles. The primer sets used in the experiments are listed in Supplemental Figure S3B. Data analysis was performed using the comparative Cp method described by Livak and Schmittgen (2001). The most abundant plastid transcript according to our analysis (16SrRNA) was chosen as reference. Hydroponic Nitrogen Supply Transplastomic tobacco and wild-type seeds were sown in soil in the greenhouse at a temperature of 25°C with a daily lighting of 16 h. After 3 weeks, the seedlings were washed with water, transferred to trays filled with vermiculite, and then received by drenching every 2 to 3 d a nutrient solution containing microelements, iron, and vitamins (nicotinic acid, pyridoxine, and thiamine) according to Murashige and Skoog (1962) and macroelements according to Heller (1953) but without sodium nitrate. Different concentrations of ammonium nitrate were then added to this basal solution. Protein Content and Amino Acid Composition MATERIALS AND METHODS Transformation Vectors and Plant Material Transformation vectors pCLT515, pCLT516, and pCLT111 and the analysis of the tobacco (Nicotiana tabacum) transgenic lines (cv PBD6) expressing PhoA and HPPD are described by Bally et al. (2008) and Dufourmantel et al. (2007), respectively. Transgenic tobacco lines (cv PBD6) expressing GFP (vector pCLT554) were selected according to the procedure of Svab and Maliga (1993) on Murashige and Skoog (1962) medium supplemented with 2 mg/L 4-benzylaminopurine and 0.05 mg/L 1-naphthaleneacetic acid. Briefly, the abaxial side of leaves from in vitro plants measuring 3 to 5 cm were bombarded with DNA-coated gold particles using a particle gun built in the laboratory according to the model described by Finer et al. (1992). After 2 d, the treated leaves were then cut into squares of on average 1 cm length and the selection of the transformants performed with 500 mg/L of spectinomycine hydrochloride. Explants were subcultured on fresh selection medium every 10 d. After 4 to 6 weeks, green calli or plantlets appearing on the bleached explants were isolated and transferred to hormone-free medium for regeneration and rooting before transfer to the greenhouse. In the greenhouse, natural light was supplemented 16 h per day by sodium lamps providing 110 mE×m22×s21. Protein Extraction and SDS-PAGE Total soluble proteins were extracted from leaf material ground in liquid nitrogen using as extraction buffer (50 mM Tris-HCl, 100 mM NaCl, and 1 mM dithiothreitol, pH 8) supplemented with protease inhibitor cocktail tablets (Roche Transnichon Diagnostics). Protein quantification was performed according to Bradford (1976) using the Protein Assay Reagent kit from BioRad. Samples were combined with Laemmli (1970) buffer supplemented with 10% (v/v) b-mercaptoethanol and boiled for 5 min before separation by SDSPAGE (12%). Measurements of Photosynthetic Parameters The effective (Fm# 2 F)/Fm# and maximum Fv/Fm photochemical quantum yields of PSII (Kitajima and Butler, 1975; Genty et al., 1989) were measured with a portable PAM-2500 fluorometer (Walz) on leaves from 3-month-old tobacco plants grown under greenhouse conditions. Comparison of Plastid Transcript Levels by Quantitative RT-PCR Total RNA from each tobacco line was isolated from mature leaves using the RNeasy Plant Mini kit (Qiagen) according to the manufacturer’s instruc- Total amino acid composition of leaves from transgenic and wild-type tobacco was analyzed using HPLC by the Amino Acids Analysis technical platform of the UMR 0203 INRA/INSA (Lyon, France). Two independent measurements were made for each line from two different samples giving almost identical results. One set of data is presented. Sequence data of the transforming vectors can be found in the GenBank database under accession numbers pCLT515 (DQ882176), pCLT516 (DQ882177), pCLT111 (CQ830291), and pCLT554 (EU870886). Supplemental Data The following materials are available in the online version of this article. Supplemental Figure S1. UV detection of GFP expression in tobacco seedlings. Supplemental Figure S2. Phenotype and protein profiles in flowers. Supplemental Figure S3. RT-qPCR analysis of chloroplast transcripts. Supplemental Figure S4. Effect of nitrogen supply on amino acid content and composition. ACKNOWLEDGMENT The Ph.D. dissertation of Julia Bally was supported in part by the French Ministry of Industry. Received April 10, 2009; accepted May 14, 2009; published May 20, 2009. 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