TABLE 3. A list of Arabidopsis MADS-box genes
Gene name
AGI/
GenBank
acc. no.
New
accession
number
Accession
number for
splicing
variant
Gene
size (bp)
Protein
(aa)
Phylogenetic
group
PISTILLATA
At5g20240
2006
208
MIKC
APETALA3
At3g54340
1660
232
MIKC
AGAMOUS
At4g18960
4247
252a
MIKC
AGL1=SHP1
At3g58780
2617
248
MIKC
AGL2=SEP1
At5g15800
2174
251
MIKC
AGL3
At2g03710
2007
258
MIKC
AGL4=SEP2
At3g02310
2134
250
MIKC
AGL5=SHP2
At2g42830
3205
246
MIKC
AGL6
At2g45650
1839
252
MIKC
AGL7=AP1
At1g69120
3527
256
MIKC
AGL8=FUL
At5g60910
3278
242
MIKC
AGL9=SEP3
At1g24260
2074
251
MIKC
AY141229
Function (Ref.)
Goto and Meyerowitz,
(1994) Genes Dev. 8,
1548-1560
Jack et al. (1992) Cell 68,
683-697
Yanofsky et al. (1990)
Nature 346, 35-39
Liljegren et al. (2000)
Nature 404, 766-770
Pelaz et al. (2000) Nature
405, 200-203
no
Pelaz et al. (2000) Nature
405, 200-203
Liljegren et al. (2000)
Nature 404, 766-770
no
Irish and Sussex (1990)
Plant Cell 2, 741-753
Gu
et
al.
(1998)
Development 125, 15091517
Pelaz et al. (2000) Nature
405, 200-203
Expression (Ref.)
Idem
idem
idem
Ma et al. (1991) Genes
Dev. 5, 484-495
Ma et al. (1991) Genes
Dev. 5, 484-495
Ma et al. (1991) Genes
Dev. 5, 484-495
Savidge et al. (1995)
Plant Cell 7, 721-733
Savidge et al. (1995)
Plant Cell 7, 721-733
Ma et al. (1991) Genes
Dev. 5, 484-495
Mandel et al. (1992)
Nature 360, 273-277
Mandel and Yanofsky
(1995) Plant Cell 7,
1763-1771
Mandel and Yanofsky
(1998) Plant Sex.Repr.
AGL10=CAL
At1g26310
3181
255
MIKC
AGL11
At4g09960
2697
230
MIKC
AGL12
At1g71692
2037
211
MIKC
AGL13
At3g61120
2053
244
MIKC
AGL14
At4g11880
3597
221
MIKC
AGL15
At5g13790
1675
268
MIKC
AGL16
At3g57230
2962
239
MIKC
AGL17
At2g22630
3270
227
MIKC
AGL18
At3g57390
1826
256
MIKC
AGL19
At4g22950
3476
219
MIKC
AGL20=SOC1
At2g45660
2394
214
MIKC
AY141209
11, 22-28
Bowman et al. (1993) Kempin, et al. (1995)
Development 119, 721- Science 267, 522-525
743
no
Rounsley et al. (1995)
Plant Cell 7, 1259-1269
no
Rounsley et al. (1995)
Plant Cell 7, 1259-1269;
Burgeff et al. (2002)
Planta 214, 365-372
no
Rounsley et al. (1995)
Plant Cell 7, 1259-1269
no
Rounsley et al. (1995)
Plant Cell 7, 1259-1269
no
Heck et al. (1995) Plant
Cell 7, 1271-1282
no
Alvarez-Buylla et al.
(2000) Plant J. 24, 457466
no
Rounsley et al. (1995)
Plant Cell 7, 1259-1269;
Burgeff et al. (2002)
Planta 214, 365-372
no
Alvarez-Buylla et al.
(2000) Plant J. 24, 457466
no
Alvarez-Buylla et al.
(2000) Plant J. 24, 457466
Lee et al. (2000) Genes idem
AGL21
At4g37940
2927
228
MIKC
AGL22=SVP
At2g22540
2137
210
MIKC
AGL23
AGL24
At1g65360
At4g24540
819
2486
226
220
Mα
MIKC
AGL25=FLC
At5g10140
5616
196
MIKC
AGL26
AGL27=FLM
At5g26870
At1g77080
366
4167
121
196
Mβ
MIKC
AGL28
AGL29
AGL30
AGL31
At1g01530
At2g34440
At2g03060
At5g65050
1023
519
1956
3700
247
172
337
196
Mα
Mα
Mδ
MIKC
AGL32=TT16
At5g23260
1899
252
MIKC
AY141211
AY141212
Dev. 14, 2366-2376;
Borner et al. (2000) Plant
J. 24, 591-599; Samach
et al. (2000) Science 288,
1613-1616
no
Burgeff et al. (2002)
Planta 214, 365-372
yes (Hartmann et al. idem
(2000) Plant J. 21, 351360
no
Michaels et al. (2003) idem
Plant J. 33, 867-874
Michaels and Amassino idem
(1999) Plant Cell 11,
949-956
no
Ratcliffe, et al. (2001) Alvarez-Buylla et al.
Plant Physiol. 126, 122- (2000) Plant J. 24, 457132; Scortecci et al. 466
(2001) Plant J. 26, 229236
no
no
no
no
Alvarez-Buylla et al.
(2000) Plant J. 24, 457466
Nesi et al. (2002) Plant idem
Cell 14, 2463-2479
AGL33
AGL34
AGL35
AGL36
AGL37
AGL38
AGL39
AGL40
AGL41
AGL42
AGL43
AGL44=ANR1
At2g26320
At5g26575
At5g26625
At5g26645
At1g65330
At1g65300
At5g27130
At4g36590
At2g26880
At5g62165
At5g40220
At2g14210
AGL45
AGL46
AGL47
AGL48
AGL49
AGL50
AGL51
AGL52
AGL53
AGL54
AGL55
AGL56
AGL57
AGL58
AGL59
AGL60
At3g05860
At2g28700
At5g55690
At2g40210
At1g60040
At1g59810
At4g02240
At4g11250
At5g27070
At5g27090
At1g60920
At1g60880
At3g04100
At1g28450
At1g28460
At1g72350
AY141248
AY141247
AY141247
AY141245
AY141253
AY141223
AY141251
AY141215
AY141218
AY141252
330
1038
657
1101
840
837
900
1044
803
3363
975
4745
109
345
218
366
279
278
299
248
67
210
324
234
none
Mγ
Mγ
Mγ
Mγ
Mγ
Mα
Mα
Mγ
MIKC
Mβ
MIKC
950
771
834
1116
855
852
757
990
864
564
576
606
624
558
549
675
260
256
277
371
284
283
196
329
287
187
191
201
207
185
182
224
Mγ
Mγ
Mβ
Mγ
Mβ
Mβ
Mβ
Mβ
Mβ
Mβ
Mα
Mα
Mα
Mα
Mα
Mα
no
no
no
no
no
no
no
no
no
no
no
Zhang and Forde (1998) idem
Science 279, 407-409
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
AGL61
AGL62
AGL63
AGL64
AGL65
AGL66
AGL67
AGL68
AGL69
AGL70
AGL71
AGL72
AGL73
AGL74
AGL75
AGL76
AGL77
AGL78
AGL79
AGL80
AGL81
AGL82
AGL83
AGL84
AGL85
AGL86
AGL87
AGL88
At2g24840
At5g60440
At1g31140
At1g29960
At1g18750
At1g77980
At1g77950
At5g65080
At5g65070
At5g65060
At5g51870
At5g51860
At5g38620
At1g48150
At5g41200
At5g40120
At5g38740
At5g65330
At3g30260
/
At3g30270
At5g48670
At5g39750
At5g58890
At5g49490
At5g49420
At1g54760
At1g31630
At1g22590
At2g11990
AY141236
AY141243
AY141244
AY143172
AY141242
AY141219
AY141254
AY141238
AY141239
AY141250
AY233210
795
1192
1643
558
2375
1856
1830
4541
3621
3539
2289
2283
1050
972
993
1158
1281
1026
3762
264
279
213
185
389
332
124
198
231
196
207
211
349
323
330
385
426
341
249
Mα
Mα
MIKC
Mα
Mδ
Mδ
Mδ
MIKC
MIKC
MIKC
MIKC
MIKC
Mα
Mα
Mβ
Mβ
Mβ
Mβ
MIKC
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
no
966
1068
885
858
1498
486
1020
492
390
321
355
294
285
334
161
339
163
129
Mγ
Mβ
Mβ
Mα
Mα
Mα
Mγ
Mγ
Mα
no
no
no
no
no
no
no
no
no
AGL89
AGL90
AGL91
AGL92 b
AGL93
AGL94
AGL95
AGL96
AGL97
AGL98
AGL99
AGL100
AGL101 C
AGL102
AGL103
AGL104
AGL105
At5g27580
672
223
Mβ
no
At5g27960
AY141249
1092
363
no
Mγ
At3g66656
537
178
Mα
no
At1g31640
1485
464
no
Mγ
At5g26950
870
289
Mβ
no
At1g69540
1825
378
Mδ
no
At2g15660
1082
333
no
Mγ
At5g06500
729
242
no
Mγ
At1g46408
801
266
Mα
no
At5g39810
1067
329
Mβ
no
At5g04640
969
322
Mα
no
At1g17310
654
217
Mα
no
At5g27050
363
120
Mβ
no
At1g47760
709
184
Mα
no
At3g18650
1161
386
Mβ
no
At1g22130
1873
335
Mδ
no
At5g37420 AY141227
988
237
Mβ
no
a
the protein length of AGAMOUS as described by Riechmann J.L., Ito T., Meyerowitz E.M. (1999). Non-AUG initiation of
AGAMOUS mRNA translation in Arabidopsis thaliana. Molecular and Cellular Biology 99, 8505-8512.
b
this gene was amplified in two consecutive PCRs and the 3’ end of the sequence was unclear, therefore we used here the AGI
prediction
C
a gene found after finishing the analysis of the MADS-box family and thus not analysed