ISSN 1054-660X, Laser Physics, 2007, Vol. 17, No. 4, pp. 583–589. QUANTUM INFORMATION AND QUANTUM COMPUTATION © MAIK “Nauka /Interperiodica” (Russia), 2007. Original Text © Astro, Ltd., 2007. UV-VIS Absorption Spectroscopy of Large Molecules for Applications in Matter Wave Interferometry N. Gotsche, H. Ulbricht, and M. Arndt* Fakultät für Physik, Universität Wien, Boltzmanngasse 5, Wien, A-1090 Austria *e-mail: [email protected] Received November 9, 2006 Abstract—We study the optical properties of various large molecules with respect to their suitability for new matter wave interference and detection schemes. Optical phase gratings for molecules will only be compatible with a sufficiently small absorption cross section visible while optical detection schemes may exploit strong UV resonances. We compare UV-VIS spectra of various biomolecules, such as amino acids, polypeptides, and proteins, with those of new perfluoroalkylated molecules and carbon nanotubes, and we discuss their suitability for coherent matter wave experiments. PACS numbers: 33.20.Ea, 33.20.Kf, 33.20.Lg, 39.10.+j, 39.30.+w, 78.67.Ch DOI: 10.1134/S1054660X07040433 1. NEW TECHNIQUES FOR MATTER WAVE INTERFEROMETRY WITH LARGE MOLECULES The physics of matter waves is a well-established research field and coherence experiments with massive objects have become textbook examples of quantum physics [1]. This also includes recent experiments with ultra-cold and weakly-bound degenerate atomic ensembles [2, 3], as well as studies with strongly-bound large and hot molecules [4]. Coherence experiments with large molecules are of interest for various reasons: on the one hand, they permit the exploration of elementary principles of quantum physics on a size and mass-scale that has not been experimentally tested so far. The internal complexity of molecules gives rise to various new decoherence effects—such as, for instance, thermally induced decoherence [5]—that cannot be observed in simpler atomic systems. But, also, applications in molecule metrology and molecule nano-lithography are conceivable. Diffraction and interferometry of molecules has been previously explored with cold dimers—such as I2 [6], He2 [7], and Na2 [8]—as well as with polyatomic helium clusters [9]. Beams of thermo-stable molecules even allowed for the extension of the mass and complexity range to small biomolecules and fullerene derivatives composed of up to more than 100 atoms [10]. in Fig. 1. The first grating prepares the coherence of the incident molecular beam. The central, optical grating serves as the diffraction, while the third structure acts as a scanning mask for the interferometrically generated molecular density pattern. The horizontal laser beam (B) at the end is used for detection through photo-ionization or laser induced fluorescence. For all optical interactions—grating and detection—it is important to know the spectral properties of those molecules that might be interesting for matter wave interferometry. In the present paper, we therefore discuss the absorption spectra of various biomolecules, novel perfluoroalkylated particles, and carbon nanotubes. Since the molecular beam sources will be very different for all of these particle classes, here we compare spectra of molecules in solution. One might expect sol- To push the mass limit in molecular matter wave interferometry even further, we need new concepts for the coherent manipulation of complex objects. Brezger et al. [11] suggested implementing a new interferometer type: a Kapitza–Dirac–Talbot–Lau interferometer (KDTLI) will combine the near-field setup of the Talbot–Lau interferometer [12, 13] with the Kapitza– Dirac effect [14], i.e. with optical gratings for molecules [15]. The idea of such an experiment is sketched 583 G1 G2 A G3 B Fig. 1. A Kapitza–Dirac–Talbot–Lau interferometer contains one standing light wave (A) and often one optical detection beam (B). 584 GOTSCHE et al. vent induced spectral shifts and changes in the extinction coefficient, but experiments with fullerenes [16] indicate that at least for nonpolar molecules the similarity between gas phase and solvent based spectra is so high that our procedure is justified for our purposes. Also, for polar biomolecules the trend of the spectrum is sufficiently clear in guiding our choice for future molecular beam experiments. ters, as one-photon absorption gratings seem to be feasible [19]. It is understood, however, that many technical difficulties would have to be overcome in the future: molecular beams of nanotubes, as well as their sorting by mass and chirality, will provide a whole scientific community still with challenging work for several years. 2. CHOICE OF MOLECULES Biomolecules are interesting candidates for matter wave interferometry as they exist essentially in a monodisperse form. They exhibit large polarizabilities and electric dipole moments. They are characterized by chirality, appear in different conformations and isomers, and, therefore, offer various new handles for investigations of coherence and decoherence with massive objects. Small biomolecules, such as tetraphenlyporphyrins, have already been successfully used in de Broglie interferometry before [10]. A new Kapitza– Dirac–Talbot–Lau interferometer installed in our lab is designed to be compatible with such high masses for beam velocities of up to 300 m/s. Recent experiments showed that pulsed laser desorption of pure biomaterials into an adiabatically expanding noble gas jet allows the beam formation for molecules at least up to the complexity level of medium-sized polypeptides [17]. Futhermore, we were successful in creating rather intense neutral beams of both tryptophan and gramicidin, which we could detect in a multiphoton ionization process at a 266 nm excitation wavelength. Tryptophan is an aromatic amino acid with a mass of 204 amu. The polypeptide gramicidin is composed of 15 amino acids with a mass of about 1900 amu. Sources and detectors for neutral gas-borne proteins are still a challenge, but Weickhardt et al. [18] already described the successful detection of neutral insulin (C257H383N65O77S6, m ~ 5800 amu) and one may hope to reach even further to cytochrome C (m ~ 12000 amu) or myoglobin (m ~ 16700 amu). Perfluorinated molecules have recently also attracted interest for matter wave experiments since they have low polarizabilities and high vapor pressures. Here, we study for the first time the optical properties of such molecules, which are four to nine times more massive than the fullerene C60. Since they do not have any simple common name, we designate them here by their mean molecular mass as perfluoro2634 (C62H36F93NOSi2), perfluoro2934 (C68H36F105NOSi2), perfluoro3379 (C96H48Cl2F102P2Pd), and “perfluoroalkylated buckyball” (C60[(CF2)11CF3]n). Carbon nanotubes are also intriguing candidates for future matter wave experiments: they exist in a large range of sizes, exhibit lower ionization potentials than biomolecules, have interesting aspect ratios, huge polarizabilities, and an enormous mechanical stability. Together with metal clusters they appear to be good candidates for purely optical Talbot–Lau interferome- All molecular materials were first dissolved in their appropriate solvents in well-defined concentrations, filled in a thin suprasil cuvette and then submitted to absorption spectroscopy inside a Varian Cary G5 photo spectrometer. Tryptophan and gramicidin were dissolved in ethanol. Insulin, myoglobin, and cytochrome C were studied in water, perfluoro2634 and perfluoro2934 in methanol, perfluoro3379 and the perfluoroalkylated buckyballs in perfluorooctane, C60 in toluene, and the carbon nanotubes again in water—after functionalization (see below). Most of these molecules occur with a unique mass—except for the natural small isotopic spread. Only gramicidin, the perfluoroalkylated buckyball, and the functionalized carbon nanotubes still deserve a further discussion. Gramicidin D is mixture of gramicidin A (80–85%), gramicidin B (6–7%), gramicidin C (10–15%), and gramicidin D (<1%). They all differ by the exchange of a single amino acid—which introduces only minor changes in the spectra and a mass variation on the percent-level—which is acceptable for the proposed de Broglie interferometry experiments. The perfluoroalkylated buckyballs were not mass selected in the chemical production process and, thus, still contain different numbers of (identical) side chains [(CF2)11CF3]n—with n varying between one and ten. Quadrupole mass spectroscopy on an effusive beam revealed that about 80% of the material was decorated by between seven and nine such side chains, with C60[(CF2)11CF3]7 being the dominant contribution that was taken as a reference to determine the molarity and extinction estimates below. The single-walled carbon nanotubes (HiPCO SWCNT) were purchased (CNI, Houston, United States) as a powdery mixture of bundled tubes. Following published recipes [20], we first sonicated them (Branson horn sonifier, 5 h, <100 W) in an aqueous solution to enforce their individualization in soap micelles. The following centrifugation at 30000 rpm separated the still remaining tube bundles from the individualized single tubes. Our own AFM measurements confirm that this process yields a typical distribution of isolated tubes with a diameter distribution peaked at ~1 nm and a length distribution between 200 and 900 nm. The optical spectra are known not to vary strongly with length. And, although an interference experiment would probably have to use further short- 3. UV-VIS ABSORPTION SPECTROSCOPY LASER PHYSICS Vol. 17 No. 4 2007 UV-VIS ABSORPTION SPECTROSCOPY OF LARGE MOLECULES Optical density, cm–1 Molarity, mmol/l 0.12 4 0.10 585 0.08 0.06 3 0.04 0.02 2 0 0.5 1.0 1.5 2.0 2.5 3.0 Optical density, cm–1 1 0 200 400 600 800 1000 1200 Wavelength, nm Fig. 2. Concentration dependent absorption spectra of myoglobin. The concentration ranges from 0.17 to 1.85 g/l. The inset shows the evaluation of the molar extinction coefficient according to Beer’s law at 633 (solid squares), 532 (upright triangles), and 266 nm (inverted triangles). ened tubes, we may take the optical properties of our sample already as a reference. Absorption spectra for all molecules were recorded for a set of different molecular concentrations to eliminate multiple scattering and saturation of the solvents. Bleaching and optical saturation were also avoided in all cases by keeping the samples in the dark when unused and by maintaining the probe intensity below 10 µW/cm2. The wavelength dependent molar extinction coefficient ε(λ) (in units [L mol–1 cm–1]) was then determined according to Beer’s law from the optical density I(λ) ε ( λ )lC = – log ⎛ ----------⎞ , ⎝ I0 ⎠ (1) where l is the thickness of the optical cell (in centimeters) and I and I0 are the measured transmission spectra with or without the dissolved molecules. The optical density for different molecule concentrations (molarities C) is shown in Fig. 2 for the example of myoglobin. We evaluate the extinction coefficient ε from a linear fit to this curve, as shown in the inset in Fig. 2. The effects of saturation or incomplete solvation would show up as a deviation from the straight line. The error bar on the extinction coefficient LASER PHYSICS Vol. 17 No. 4 2007 is mainly due to the weighing tolerances in the preparation of the solutions. The molecular absorption cross section (in units of cm2) is then derived from the extinction coefficient (in units [l/mol/cm]) according to σ(λ) = 1000ε(λ)/(NA log(e)), where NA is the Avogadro number and e is Euler’s number. Absolute absorption coefficients were also determined independently for all molecules in a separate measurement at the specific laser frequency of 632.8 nm to calibrate the spectra. For calibration purposes, we also recorded spectra of rhodamin B and tryptophan. Their literature spectra [21, 22] were found to be in very good agreement with our data. All other molecules were treated in a similar way. Their spectra are displayed in Fig. 3. From traces, as those appearing in Fig. 3, we can extract the extinction coefficients and absorption cross sections for the wavelengths 266, 532, and 1064 nm, which are of particular interest for ionization, laser induced fluorescence, optical phase gratings, and possibly optical traps. Their values are summarized in the table. In Fig. 4, we also show an absorption spectrum of both isolated (left) and mixed (bundled and isolated) single-walled carbon nanotubes. The graph immediately shows that absorption is rather significant over 300000 532 nm GOTSCHE et al. 266 nm 586 Cytochrom C 140 Myoglobin 120 100 80 200000 60 40 100000 pFC60 0 70 Gramicidin 60 Rhodamin B 50 0 150000 Insulin 100000 C60 40 30 20 50000 10 0 Cross section, 10–17 cm2 Molar extinction coefficient, l/mol cm 20 0 Perfluoro 3379 Perfluoro 2934 10000 5 4 Perfluoro 2634 Tryptophan 3 2 5000 1 0 200 400 600 0 800 Wavelength, nm Fig. 3. Molar extinction and absorption cross sections for molecules with potential interest for matter wave interferometry. One requirement for the molecules to be suitable for green optical phase gratings is to have a sufficiently low extinction at 532 nm, the wavelength of the phase grating laser. the entire spectrum and it varies only by about a factor of two for all wavelengths from the ultraviolet to the infrared. The overall sloped background on the blue side of the spectrum is caused by a plasmon resonance, which can be found in bundled and individualized tubes. The peak structure in the near-infrared is related to electronic transitions in individual tubes in the ensemble, and the rather good contrast after centrifugation is a clear indication of the high degree of individualization of the tubes in the solvent. We use again Beer’s law (1) to obtain the concentration of individualized tubes after sonication and centrifugation. We know that the spectrum is composed of two parts: the ubiquitous plasmon—exhibited by both the bundles and the individual tubes—and the resonant features of the individualized tubes. The latter become much more detailed and dominant in the course of cen- trifugation which sequentially removes the more dense remaining bundles. We, thus, evaluate a concentration of individual tubes after centrifugation of 13(2) mg/l from an initial concentration of 50(2) mg/l of bundles. 4. SUITABILITY FOR MATTER WAVE INTERFEROMETRY Within a matter wave experiment based on an optical phase grating—such as the Kapitza–Dirac-Talbot– Lau interferometer—the interaction of the molecules with the central laser light grating (at 532 nm) should be conservative and mediated by the optical dipole force alone. Scattered or spontaneously emitted photons have to be avoided as they impart a random recoil on different molecules, thus washing out the interference pattern. LASER PHYSICS Vol. 17 No. 4 2007 UV-VIS ABSORPTION SPECTROSCOPY OF LARGE MOLECULES 587 Optical properties of all molecules at those laser wavelengths which are supposed to be important for optical detection, diffraction, and trapping Molecule Tryptophan Gramicidin Insulin Cytochrom C Myoglobin Perfluoro2634 Perfluoro2934 Perfluoro3379 Perflouroalkylated C60 C60 C70 Rhodamin B ε [l/mol/cm] σ [cm2] @ 266 nm ε [l/mol/cm] σ [cm2] @ 532 nm ε [l/mol/cm] σ [cm2] @ 1064 nm 4.8(1) × 103 1.85(5) × 10–17 2.43(8) × 104 9.3(3) × 10–17 7.1(3) × 103 2.7(1) × 10–17 1.73(8) × 104 6.6(3) × 10–17 2.71(2) × 104 1.04(1) × 10–16 2.5(1) × 102 9.46(2) × 10–19 7.9(2) × 102 3.01(6) × 10–18 7.7(4) × 103 2.9(1) × 10–17 6 × 104 2 × 10–16 – 19 ± 1 7.2(2) × 10–20 4.3(2) × 102 1.64(8) × 10–18 4.6(2) × 103 1.77(8) × 10–17 9.3(4) × 103 3.6(2) × 10–17 6.5(1) × 103 2.52(2) × 10–17 63 ± 2 2.41(6) × 10–19 – 13 ± 1 5.2(2) × 10–20 3.2(2) × 102 1.23(6) × 10–18 3.8(1) × 103 1.47(6) × 10–17 3.6(3) × 102 1.4(1) × 10–18 1.26(1) × 103 4.80(4) × 10–18 88 ± 6 3.4(2) × 10–19 – – 2.59(4) × 104 9.9(2) × 10–17 2.2(1) × 103 8.4(4) × 10–18 4 × 103 1 × 10–17 7.6(1) × 102 2.89(4) × 10–18 2.0(5) × 10–17 [16] 5.36(9) × 104 2.05(3) × 10–16 709 ± 34 2.7(1) × 10–18 1 × 102 3 × 10–19 17 ± 1 6.4(2) × 10–20 2.6(1) × 102 1.0(2) × 10–18 One can argue that the optical absorption event itself—followed by an internal conversion instead of an emission process—would not destroy the interference, since it is a phase coherent process which always shifts the molecular fringe pattern by the same amount. However, the Poissonian nature of the laser light statistics implies that each molecule will absorb a different number of photons. Additionally, the superposition of unshifted, shifted, and multishifted curves then also reduces the interference contrast—even though it does not necessarily completely destroy it [15]. polarizability and the absorption cross section, both at the wavelength of the diffracting laser beam. Large particles are permitted to exhibit a higher absorption cross section than smaller ones, since one can afford to work at lower laser intensities. The phase acquired by the molecules during the passage through the laser field It is, therefore, generally preferable that the wavelength of the optical phase grating is far detuned with respect to all major molecular transition. Yet, it is also known that complex molecules, such as the fullerenes, as well as many of the objects discussed in the present work, have “resonances” that span several ten to hundred nanometers—at least when the molecules emerge from thermal beams. can still be high at a low laser intensity—and, thus, low absorption probability—if the polarizability is sufficiently high. Molecules are, therefore, assumed to be suitable candidates for a KDTL interferometer if their α/σ (532 nm) is comparable to or bigger than that of C70. However, it has recently been shown that KDTL interferometry can be achieved with C70 [23], even though it exhibits a finite absorption. It, thus, turns out that the figure-of-merit for phase gratings is defined by the ratio of α/σ (532 nm), i.e. by the ratio of the optical LASER PHYSICS Vol. 17 No. 4 2007 t1 φ = ∫ ( αE ( r, t )/2 ) dt 2 (2) t0 4.1. Biomolecules A glance at the table reveals that the absorption coefficient of tryptophan and gramicidin at 532 nm is between more than a factor of one hundred and a factor often smaller than that of C70. It is very reasonable to assume that these values will still stay way below the values of C70 in gas phase experiments. 588 GOTSCHE et al. Optical density, cm–1 0.8 0.7 0.04 1225 nm 703 nm 1003 nm Concentration, g/l 0.02 0 0.6 0.4 0.8 1.2 1.6 Optical density, cm–1 0.5 0.4 400 600 800 1000 1200 400 600 Wavelength, nm 800 1000 1200 Fig. 4. Left: Absorption spectrum of isolated and purified carbon nanotubes (see text). Right: Absorption spectra of unpurified tube samples at concentrations between 10 and 50 mg/l. Since this sample was not centrifuged, it provides us with concentration information: the off-resonant optical densities are identical for individualized tubes and bundles. The inset in the left panel shows the connection between the concentration and the optical density (squares 1225, circles 1003, and triangles 703 nm). The literature values for the polarizability amounts to 23 Å3 for tryptophan and 580 Å3 for insulin [24]. For the polarizability of larger proteins, such as cytochrome and myoglobin, it is justifiable to assume a proportionality of mass and polarizability as in hydrocarbons [25]. This rule is also consistent with the known data for amino acids and polypeptides as well as the fullerenes. Cytochrome C (12000 amu) and myoglobin (16700 amu) may, thus, be described by a static polarizability of 1200 and 1700 Å3, respectively. These polarizabilities exceed the fullerene value by factors of 15 and 20, respectively, whereas the absorption cross sections remain comparable to those of C70. The large width of all resonance lines implies that even on a slope of the absorption peak these values will change only by a small factor. We can, therefore, conclude that all selected biomolecules possess optical properties which are compatible with optical phase gratings as their α/σ (532 nm) values exceed that of C70. 4.2. Perfluoralkylated Molecules The polarizability of perfluoralkylated molecules has not yet been determined experimentally. In order to obtain a realistic estimate for future experiments, we refer to simulations for perfluoro2934 and perfluoro2634 using the Gaussian software. Generally, the response of a molecule to an external electric field will depend on the frequency of the laser field, on the temperature dependent configuration of the molecule, on the vibrational and rotational states, and more. It turns out, however, that the values vary by not more than 50% even for rather strong molecular deformations. This permits sufficiently reliable predictions about the suitability of a molecule as a potential candidate in interference experiments. The static polarizability is computed to be about 90 Å3 for both perfluoro2934 and perfluoro2634, i.e., it is nearly identical to the fullerene value. The values presented here describe the static polarizability, but, like for the fullerenes, the absence of dipole allowed transitions in the entire visible frequency band implies that the static value describes the polarizability over the visible range within about a factor of two [26]. Since the polarizability of all perfluorinated particles is nearly identical with that of C70 it suffices to compare their absorption cross section at 532 nm. The table reveals that the absorption of C70 surpasses all perfluorinated particles even though they latter contain up to eight times as many atoms. Thermal beams of these massive objects have recently been demonstrated in our lab. Perfluoralkylated molecules are, therefore, very LASER PHYSICS Vol. 17 No. 4 2007 UV-VIS ABSORPTION SPECTROSCOPY OF LARGE MOLECULES promising candidates for matter wave interferometry in the multi-kDa mass range. 4.3. Carbon Nanotubes The spectra evidently show significant absorption at 532 nm—and essentially all visible wavelengths. This has two reasons: on the one hand, the existence of a π-plasmon, which is common to all tube types—and on the other hand, the individual resonances that are related to the diameter and chirality of the tubes. With present techniques and mass selection alone, a phase grating seems, therefore, rather difficult to implement for SWCNTs. It should, however, be noted that optical phase gratings may be again be feasible as soon as chiralityselected tubes become available. Also, the polarizability of metallic tubes is known to surpass the simple polarizability-to-mass extrapolation. While this extrapolation works fine for hydrocarbons, the polarizability of metallic tubes may be more than tenfold higher. Complimentary to that, it is interesting to see, that matter wave interferometry may also be based on optical absorption gratings, where the term absorption now refers to the fact that a molecule might be removed from the molecular beam, when it passes the antinode of a standing laser light beam. For reasons similar to those given above, this is, however, only viable if the removal of the molecule is achieved for instance in single-photon ionization/shelving, and this usually means with the help of highly energetic light. The ionization potentials of biomolecules and perfluoroalkylated are generally situated in the range of 9– 12 eV, i.e. way beyond all existing laser photon energies. In contrast, carbon nanotubes have ionization potentials smaller than 7 eV, which are well accessible for VUV excimer lasers, such as a F2 laser at 157 nm. Nanotubes might, therefore, be well suited for absorptive diffraction gratings and also for detection schemes based on absorptive processes [19]; this holds independent of their internal properties and individual chirality. Summarizing, we can say that for all molecules studied here, the optical transitions and polarizabilities are such that optical gratings are generally conceivable. For biomolecules and perfluoralkylated particles, phase gratings will be the diffraction elements of choice, while carbon nanotubes are predicted to be appropriate candidates for absorptive ionization gratings. For all of these particles, matter wave interferometry itself will also be a useful method to determine the polarizabilities with higher accuracy. ACKNOWLEDGMENTS Our studies are funded by the Austrian Science Foundation (FWF) within the projects START Y177 and SFB F1505. 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