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Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 Contents lists available at ScienceDirect Journal of Experimental Marine Biology and Ecology j o u r n a l h o m e p a g e : w w w. e l s ev i e r. c o m / l o c a t e / j e m b e Habitat variation, species diversity and ecological functioning in a marine system J.E. Hewitt a,⁎, S.F. Thrush a, P.D. Dayton b a b National Institute Water and Atmospheric Research, PO Box 11-115, Hamilton, New Zealand Scripps Institute of Oceanography, La Jolla, California 92093-0227 a r t i c l e i n f o Keywords: Biological traits Evenness Functional diversity Functional redundancy Habitat heterogeneity Richness a b s t r a c t The expectation that long-term, broad-scale changes in the relative abundance of species, homogenisation of habitats and decreases in diversity will affect ecosystem function has led to an increasing number of studies on functional diversity and composition. Such studies frequently consider the effect of environmental gradients and anthropogenic impacts, but rarely the effect of biogenic habitat variation. In marine softsediment systems, habitat variability is likely to be of particular importance because of the strong link between habitat and species diversity. In this study we examine the link between functional trait diversity (as richness and evenness) and composition, and habitat variation in two locations with different regional species pools. We found similar functional traits occurring in the two locations, but differences between habitats within the locations. High evenness within traits was apparent (across both locations and habitats) reflecting the potential for the maintenance of function with the loss of individual species. Between-habitat differences in functional traits were driven by differences in organism densities rather than the presence/ absence of individual traits, emphasising the importance of density shifts in driving function. Furthermore, our demonstration of habitat variation as a driver of functional composition and diversity suggests that habitat heterogeneity should be explicitly included within studies trying to predict the effect of species loss on ecosystem function. © 2008 Elsevier B.V. All rights reserved. 1. Introduction Globally, marine environments are under stress from a variety of human activities. Dramatic and chronic changes in the relative abundance of species, homogenisation of habitats and decreases in diversity have been documented in many places. Increasingly, ecologists expect that these changes will have concomitant effects on the way ecosystems function (e.g., Gray, 1997; Petchey, 2000; Loreau et al., 2001; Hughes et al., 2003). The need to prove to managers that decreases in biodiversity have ramifications beyond the simple loss of species, and to find generalities across regions with different species pools, has led to the concept of considering functional diversity and composition as a complement to species diversity. Assessments of functional diversity and composition are generally undertaken to address 4 main themes: comparisons across regions and along environmental gradients, the detection of anthropogenic impacts, relationships between species and functional diversity; and relationships with stability and resilience of ecosystem function. The concepts of functional diversity and composition are complex and often used without an accompanying definition. Those definitions that exist are based on the concept that the ability of an ecosystem to function ⁎ Corresponding author. NIWA, PO Box 11-115, Hamilton, New Zealand. Tel.: +64 7 8567026; fax: +64 7 856 0151. E-mail addresses: [email protected] (J.E. Hewitt), [email protected] (S.F. Thrush), [email protected] (P.D. Dayton). 0022-0981/$ – see front matter © 2008 Elsevier B.V. All rights reserved. doi:10.1016/j.jembe.2008.07.016 may be more related to species-specific traits than species richness (Walker, 1992; Loreau et al., 2001; Hooper et al., 2005). For example, functional diversity is “the value and range of the functional traits of organisms in a given ecosystem” (Tilman, 2000; Dıaz and Cabido, 2001). In simple terms, functional diversity leads to an understanding of communities and ecosystems based on what organisms do rather than on evolutionary history as reflected in taxonomic relationships (Petchey and Gaston, 2006). Although there are a burgeoning variety of methods for measuring functional diversity and composition (see Petchey and Gaston, 2006), this focus on functional or biological traits has highlighted the importance of integrating natural history into ecology (Dayton, 2003). Theoretical studies on the relationship between species and functional diversity suggest that the relationship will differ between systems, dependent on the number of species and organisms occurring within specific functional groups (Micheli and Halpern, 2005). The degree of this overlap (assumed to represent the potential for functional redundancy) is predicted to lead to differences in how loss of species will affect ecological functioning, with high functional redundancy expected to increase functional stability and resilience, mainly through niche partitioning. Higher niche complementarity should allow more complete use of the resource potentially increasing productivity and invasion resistance (Dukes, 2001; Petchey, 2003). If higher niche complementarity within a community reflects a greater variety of potential responses to environmental conditions, it may be expected to provide a buffer to change and increase ecosystem stability and resilience (Tilman, 1996; Doak et al., 1998). Author's personal copy J.E. Hewitt et al. / Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 The nature of the relationship between species and functional diversity is unknown for most ecosystems, posing important challenges for ecologists (Naeem, 2002; Micheli and Halpern, 2005; Norling et al., 2007). This is particularly true in marine benthic communities where the research effort is relatively recent, spear headed by the translation of biological trait analysis to the marine environment by Bremner et al. (2003). Furthermore, many studies of functional biodiversity focus on the number of functional traits, without considering within-trait diversity, and infer overall functional redundancy from differences between taxonomic and functional diversity. Studies on within-region differences are focussed on understanding impacts and the link between habitat (particularly biogenic-structured habitats) and functional diversity remains largely unexplored. This is despite work demonstrating the strong effect of habitat diversity on estimates of biodiversity (Conner and McCoy, 1979; Tokeshi, 1999; Ellingsen, 2002). In this study we attempt to merge work on habitat-biodiversity relationships with functional trait diversity and composition, and ask whether there are functional differences between soft-sediment habitats. We investigate within-functional-trait diversity explicitly, by considering within-trait species richness and evenness, with the aim of determining whether the potential for functional redundancy is related to specific functions and habitats. The study is carried out on soft-sediment macrofauna in two near-coast areas of New Zealand, oceanographically distinct with different species pools, both to create some generality and to allow us to determine whether differences in functionality occur as a result of different species pools constraining the pool of traits available to local areas. We expected that differences in functional composition would be more closely linked to habitats than regional species pools. 2. Methods 2.1. Data collection The data analysed in this study were collected from two locations in New Zealand likely to have different species pools, the Northern Hauraki Gulf (NHG, 36.4°S; 174.8°E), and Tonga Island Marine Reserve (TIMR, 40.9°S; 173.8°E). These locations are separated by approximately 500kms. NHG is on the northeast coast of the North Island, opening to the Pacific Ocean and within the North Auckland current system. TIMR is on the northwest coast of the South Island, opening to the Tasman Sea. Neither locations are exposed to commercial bottom fishing or industrial contamination, and both contain a variety of soft-sediment habitats. The collection of data analysed in this study is described by Thrush et al. (2006a) and (1998). Briefly, surveys were conducted in Kawau Bay and nearby exposed areas of the Hauraki Gulf (February 1994), in Kawau Bay (February 1999) and in TIMR (September 2003). For all three studies, detailed quantitative video sampling of 20m transects were used to describe habitats based on both physical characteristics and the density of habitat-forming organisms (Table 1). Macrofaunal core samples (10cm diam, 12cm deep), were located along the Table 1 Habitat descriptions derived from video imaging of the seafloor NHG Homogeneous bare sand (HSB) Atrina and sponges (BIO) Mud with worm tubes (MW) Coarse sand dense algal turf (ALG) TIMR Homogeneous sand, sparse epifauna (HSS) Sandy-mud, encrusted rubble patches (RP) Mud with hermit crabs (MC) Sand, bivalves and echinoderms (SBE) Shelly sand, mobile epifauna, tubeworms (SHM) Mud with dense Atrina zelandica beds (MA) Coarse sand, heavily bioturbated (CS) Sand with bivalves and gastropods (SBG) Sand, mobile epifauna (SME) 117 Table 2 Traits based on species behaviour, size and shape, selected as influencing, either directly or indirectly, important ecosystem functions General category Trait Motility Sedentary or only moving within fixed tube structure Limited free movement, e.g., withdrawal into sediment Freely motile in or on sediment Semi-pelagic Suspension, Deposit Predator Scavenger Grazer Permanent burrow Simple hole or pit Tube Mound Trough- producing troughs in sediment Trampling across sediment surface Surface (top 2 cm)-to-deep (N 2 cm deep) Deep-to-surface Surface mixing Deep mixing Small (0.5 - 5 mm longest dimension, exclusive) Medium (5-20 mm longest dimension, exclusive) Large (N = 20 mm longest dimension) Veniform length NNN width Globulose, length N or = width Contains calcium carbonate Protruding above sediment surface Attached to other animals or small hard surfaces Top 2 cm Deeper than 2 cm Feeding Habitat structure Sediment moving Size Form Living position in sediment Traits are grouped into general categories likely to be functional important. transects and collected by diving. In 1999 and 2003, 5 - 10 cores were collected per site such that within-site variability was maximised. In 1994, 15 core samples were collected at a number of sites throughout the Hauraki Gulf. For this paper, sites from exposed areas to the north of Kawau Bay were selected for use and 6 - 10 samples from each site chosen that maximised the within-site species richness (as per Ellingsen et al., 2007). Note that Ellingsen et al. (2007) investigated and dismissed the potential for differences between the 1994 and 1999 Kawau Bay data. In TIMR sites encompassed a maximum linear extent of about 10km with a depth range of 8-24m, while at NHG sites encompassed a maximum linear extent of 30km and ranged from 6-25m depth. Both locations had sites varying from sheltered to wave-exposed. Core samples were sieved on a 0.5mm mesh sieve and preserved in 70% Isopropyl alcohol. Later organisms were counted and identified to as low a taxonomic resolution as practical (generally to species level). The upper size of taxa represented in the data is considered to be ~ 75mm as larger, epibenthic, organisms were not considered to be well sampled. Given the dispersal potential of soft-sediment macrofauna and the spatial scale of our sampling, most species would have the potential to move from one habitat to another within each location. 2.2. Defining functional traits The use of functional traits to define functional diversity has been pioneered in terrestrial and freshwater systems (e.g., Keddy, 1992; Townsend and Hildrew,1994), where links between functional traits and ecosystem processes have been established (e.g., Usseglio-Polatera et al., 2000; Dıaz and Cabido, 2001). In marine systems, ecosystem functionality has for many years focussed on feeding mechanisms, but recently biological trait analysis has been developed (BTA, Bremner et al., 2003). The biological traits used generally reflect life history, morphology and behaviour that influence ecosystem processes (e.g., size, feeding, influence on sediment and hydrodynamics). Processes of importance Author's personal copy 118 J.E. Hewitt et al. / Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 in marine ecosystems are nutrient fluxes across the sediment –water interface, bioturbation and irrigation, habitat creation, secondary production, sediment stability/transport and carbon sequestration. The biological traits we have selected to represent functionality (Table 2) are either directly linked to these processes or are indirect indicators (as per Lavorel and Garnier, 2002). They contain traits found to be important by Bremner et al. (2003) and Norling et al. (2007), but do not include measures of fitness (Schratzberger et al., 2007) or estimates of the spatial extent or temporal frequency of dispersal. Disregarding traits that are not functionally significant at the scale of the study is critical for calculating a value that predicts ecosystem functioning well (Dıaz and Cabido, 2001). Information for assigning taxa to functional traits was derived from taxonomic and natural history texts, body characteristics (e.g., jaw structures) and personal observations from video and core processing. While for some general categories (e.g., size and shape, see Table 2), species were only allocated to one trait (e.g., small or large), for others species could either exhibit multiple traits (e.g. feeding as a predator Table 3 R- and p-values of ANOSIM comparisons between the functional composition of the different habitats at the two locations (NHG, TIMR) a- NHG SHM SBE ALG BIO CS HSB MA MW 0.72 0.001 0.69 0.001 0.54 0.001 0.03 0.246 0.32 0.001 0.10 0.088 0.52 0.001 0.60 0.001 0.31 0.001 -0.03 0.608 0.29 0.001 0.37 0.001 0.11 0.034 0.48 0.001 0.06 0.095 0.78 0.001 0.15 0.008 0.37 0.001 0.18 0.011 0.36 0.001 0.23 0.001 0.81 0.001 0.25 0.029 0.29 0.009 0.12 0.128 0.58 0.001 0.20 0.041 0.08 0.197 SBE ALG BIO CS HSB MA b- TIMR HSS SME 0.08 0.091 MC 0.27 0.009 0.04 0.307 SME RP 0.35 0.003 0.10 0.082 - 0.07 0.731 MC RP SBG 0.05 0.045 - 0.01 0.505 0.11 0.018 0.17 0.038 and a scavenger) or not exhibit a trait at all (e.g., sediment structuring). Where species exhibited multiple traits within a general category, fuzzy coding (Chevenet et al., 1994) was used to assign species to traits, with allocation across the general category summing to 1. Care was also taken that the traits used did not overlap in terms of functionality. Thus, at first glance some key ecosystem engineers may seem to be missing, (e.g., epibenthic bivalve beds), however, these are covered by combinations of traits (e.g., sedentary + surface living + contains calcium carbonate). Furthermore, we believe that by using traits that cover important functions we have avoided the pitfall of being limited by the number of guilds of functional groups present in a given assemblage (Mouillot et al., 2007). Frequently (although not in a majority of cases), information for individual genera or species was not available and information from other species in the same family were used. Where different species within a family had been recorded as exhibiting different traits, the taxon was assigned equal probabilities of a particular trait occurring. We do not feel that this will have compromised our analyses as changing a randomly selected 10% of these species to probabilities Table 4 Numbers of functional traits within each habitat for which the minimum number of taxa representing the trait was 0 or 1 taxon only at the within-core or within-site scale Location NHG TIMR Fig. 1. Non-metric multidimensional scaling ordination plots based on Bray-Curtis similarities calculated from raw data for (a) taxonomic and (b) functional trait information. Black-filled shapes represent site data from TIMR; other shapes represent data from NHG. Habitat SHM SBE ALG BIO CS HSB MA MW HSS SME MC RP SBG Within-core Within-site 0 Taxon 1 Taxon 0 Taxon 1 Taxon 11 17 10 19 11 7 12 8 12 12 7 12 14 5 3 4 7 3 7 1 6 8 8 7 9 4 4 3 1 3 1 2 1 0 1 3 0 1 1 2 0 2 2 3 2 0 4 3 3 4 2 1 Author's personal copy J.E. Hewitt et al. / Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 reflecting a dominant behaviour (randomly chosen) did not change our overall results. Two datasets were constructed. The first comprised the abundance of each species multiplied by its fuzzy coding for each trait. The second dataset was constructed from the first by summing across species to give a single value for each trait in each sample. The first dataset was used to calculate taxa richness (as number of taxa) and Pielou's evenness within each functional trait at a variety of scales (core, site, habitat and location). The second dataset was the basis for the comparisons of functional composition between regions and habitats 119 and for the calculations of functional-trait richness and evenness for each location/habitat combination. 2.3. Statistical analyses Statistical analyses were based around answering 3 main questions. 1 Are differences in function driven by regional species pools? To answer this question we tested whether there were differences in both species composition and functional traits between the Fig. 2. Taxa evenness and richness calculated across the two locations for each functional trait. Author's personal copy 120 J.E. Hewitt et al. / Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 two locations using one-way ANOSIMs (Clarke and Gorley, 2006) on Bray-Curtis similarities calculated from raw data. As there were differences in habitat types occurring at the two locations, we also tested for differences in species composition and functional traits between habitat types at each location separately (again using one-way ANOSIMs). One-way general linear models were used to test whether there were differences in functional trait richness or evenness between the two locations and then between habitat types in the two locations separately. 2 How does habitat affect function? This utilised the results of the one-way ANOSIMs conducted across habitat types at each location on functional traits. 3 Within-function diversity. To look at differences in taxa richness and evenness within functional traits between locations we used a t-test that paired the different functional traits. We also considered whether taxa richness within a functional trait was affected by total number of individuals in that trait and whether taxa evenness was affected by either taxa richness or total number of individuals, by calculating Spearman's rho correlations between these variables at each location separately. 3. Results 3.1. Are differences in function driven by regional species pools? Out of the 374 taxa observed across locations, only 112 were held in common. 79 taxa were only found in TIMR and 183 were only found in NHG. Clear differences in species composition were observed between the two locations (R = 0.65, p = 0.001) and between most of the habitat types within the locations (R = 0.725, p b 0.001 and R = 0.391, p = 0.001 for NHG and TIMR respectively) (Fig. 1). However, when the same analyses were conducted on functional trait composition, differences between habitats within a location were greater (R = 0.314, p = 0.001 and R = 0.113, p = 0.008 for NHG and TIMR respectively) than the differences between the two locations (R = 0.044, p = 0.06) (Fig. 1). What little difference was observed between locations may be a result of habitat differences between the two locations (Table 1). No differences in functional trait richness or evenness were observed between the two locations (dfmodel = 1, dferror = 234, p N 0.15 for both richness and evenness), although there were differences between habitats in functional trait richness at both locations (dfmodel = 4, dferror = 66, p = 0.0405 and dfmodel = 7, dferror = 158, p = 0.0605 at TIMR and NHG respectively) and in functional trait evenness at NHG (dfmodel = 4, dferror = 66, p = 0.2709 and dfmodel = 7, dferror = 158, p b 0.0001 at TIMR and NHG respectively). 3.2. How does habitat affect function? Differences in functional trait composition between habitats were observed at both locations, although there were more differences at NHG than at TIMR (Table 3). At NHG, the habitat that was most highly structured by epifauna (BIO) was less likely to be different from other habitats, probably due to its higher within-site variability of microhabitats and biodiversity. This also occurred at TIMR for the rubble habitat (RP), previously demonstrated to have high within-site variability (Hewitt et al., 2005). Although taxa had previously been demonstrated to show a high degree of habitat specificity (Thrush et al., 2006a), all functional traits occurred in most habitats. Thus, differences between habitats were most usually driven by higher numbers of taxa and individuals in functional traits, occurring in certain habitats, rather than absence of functional traits. However, at the within-core scale, functional traits were frequently missing, although the number of those missing varied between habitats (Table 4). This generally reflected within-site heterogeneity as, at the within-site scale, numbers of missing traits were generally low. 3.3. Within-function diversity Differences in taxa richness and evenness within functional traits were observed between locations (Fig. 2). Richness was higher at NHG overall traits (paired t-test, t = 6.43, p b 0.0001) and evenness was lower (t = 6.451 p b 0.0001). At TIMR very high evenness (N 0.95) was observed for attached organisms, predators and scavengers, organisms producing troughs and mounds in the sediment surface and organisms moving sediment from depth to the surface. At NHG, low evenness (b 0.65) was observed for organisms moving sediment from the surface to depth, those producing permanent burrows and semipelagic organisms. There were also differences between taxa richness and evenness within the functional traits in different habitats at the two locations. In both locations, the more mobile, exposed habitats with coarse sands, mobile epifauna and high species richness (SHM, SBE) were least likely to show within-trait evenness. Also, traits providing habitat structure on the sediment surface were most likely to exhibit high evenness (Table 5). At NHG, shape traits, followed by size, feeding and mobility traits, were next most likely to exhibit high evenness, while at TIMR feeding and size traits were next most likely to exhibit high evenness. In both locations traits related to position in the sediment and type of bioturbation were least likely to be highly even. There was no positive relationship (p b 0.05) between evenness and either richness or total number of individuals found in the Table 5 Numbers of each functional trait category exhibiting (a) high evenness (N0.95) and (b) low evenness (b 0.5) for each habitat type in both locations Types of functions total (a) NHG Sediment moving Feeding Motility Living position Form Size Habitat structure Sum 5 6 6 0 7 6 15 (a) TIMR Sediment moving Feeding Motility Living position Form Size Habitat structure Sum 2 7 5 2 4 6 11 (b) NHG Sediment moving Feeding Motility Living position Form Size Habitat structure Sum 1 0 2 1 1 0 3 (b) TIMR Sediment moving Feeding Motility Living position Form Size Habitat structure Sum 0 0 0 0 0 0 1 SHM HSB BIO ALG SBE CS MA MW 1 3 1 2 1 1 1 2 2 2 1 1 2 7 1 1 3 1 1 1 1 4 7 2 2 3 13 1 2 3 11 HSE 1 3 1 1 1 2 4 13 RP MC 1 2 1 1 2 5 1 2 3 9 SBG 1 2 2 1 1 1 HSB BIO ALG SBG CS MA MW 1 1 0 0 1 1 0 SME 1 2 4 SHM 1 1 3 1 1 1 8 1 1 5 0 0 1 2 0 SME HSE RP MC SBG 1 1 The values designated as high and low were defined by the distribution of values observed Total is the sum across the habitats for a category and sum is the sum across all traits for each habitat. Author's personal copy J.E. Hewitt et al. / Journal of Experimental Marine Biology and Ecology 366 (2008) 116–122 functional traits, at NHG, and only a weak one between evenness and total number of individuals (Spearmans rho = 0.31) at TIMR. Positive relationships between richness and total number of individuals were found in both locations (Spearmans rho = 0.65 and 0.85 at NHG and TIMR respectively). The lack of strong increasing relationships between evenness and either richness or total number of individuals found in the functional traits, suggests that these differences may be functionally important. 4. Discussion Our results demonstrate similar representation of functional traits across the two locations, suggesting that the regional species pool is not a major constraint. Differences were, however, observed between habitats within each location, confirming the importance of habitat filtering. High evenness within functional traits was apparent (across both locations and habitats). We also observed variation in ecological function both at the scale of habitats and within habitats. At the small scale (cores), not all functional traits were represented and many traits were represented by a single species, similar to Bremner et al. (2003)'s observation that the use of biological traits highlighted small-scale heterogeneity. However, between-habitat differences in functional traits were driven by differences in organism densities rather than the presence/absence of individual traits, emphasising the importance of density shifts in driving the functional attributes of habitats. This variation across scales in the distribution of functions underscores the need to scale-up and integrate across seafloor landscapes in order to accurately assess ecosystem functioning. The presence of high (or low) evenness is of fundamental importance to community dynamics. Evenness is often used to argue for or against the competing theories of species composition being driven by environmental filters rather than competition (Zobel, 1997), with high evenness suggesting that species have been environmental filtered and thus share many traits. High evenness within functions at the relatively coarse-scale description of ecosystem functions used in this and many other studies (Bremner et al., 2003; Bell, 2007; Mouillot et al., 2007; Schratzberger et al., 2007), also reflects the potential for the maintenance of function with the loss of individual species. Coastal seafloor areas that are not seriously degraded are recognised for their habitat diversity, which is considered to contribute to their often high species richness (Gray et al., 1997; Gray, 2002; Thrush and Dayton, 2002; Thrush et al., 2006b). Our results, showing differences in the densities of specific functional traits between habitats, emphasises the potential importance of habitat variation to ecosystem functioning in coastal soft-sediments. In particular, we observed higher numbers of organisms that transfer sediment from the surface to depth in shelly-sand habitats than muddy habitats. More suspension-feeders were found in complex biogenic habitats; while simple mud habitats were least likely to have large organisms but most likely to have organisms producing mounds on the sediment surface. In soft-sediment systems there is the potential for a strong feedback loop between certain functions and habitat, with species influencing sediment topography (e.g., Van Blaricom, 1982; Graf, 1999) and interacting with hydrodynamics (e.g., Green et al., 1998; Ciutat et al., 2007), to influence grain size (Rhoads, 1974), and creating small patches of hard surfaces for other species to colonise (Gutiérrez et al., 2003). This feedback is likely to be strongly influenced by three factors that also influence the role of organisms in contributing to ecosystem function: density, size and spatial arrangement (Thrush and Dayton, 2002 and references therein). In particular, the existence of this feedback increases the potential for densitydependent effects, and the spatial arrangement of functional traits and habitats, at a variety of scales to be important. The existence of different habitats with varying magnitude of specific functional traits increases functional diversity and suggests 121 that ecosystems have evolved as an interconnected landscape of habitats (Margalef, 1968). Thus, the functions supported by the traits we calculated may not only accumulate in importance with increasing area or habitat diversity but interactions between them may lead to more effective recycling and processing of energy and matter. Such phenomena have been proposed as system-scale indicators of ecosystem health (Rapport et al., 1998). Moreover decreasing diversity is likely to decouple interactions between functional groups (Thrush et al., 2008) with fewer species available to contribute to a number of functions. This is likely to decrease the potential for interactions between functions (e.g. facilitation between grazers and bioturbators) thereby decreasing ecosystem functionality. While integrated acrosshabitat field measures of fluxes and other ecosystems functions are needed to truly test the validity of such indicators, our analysis suggests that habitat variability and variation in the functional traits of macrofauna may well be a useful surrogate for more complicated measures of ecosystem health. Our findings also suggest that habitat heterogeneity will contribute in a non-random way to the implications of species loss for ecosystem functioning, especially in soft-sediments where much of the habitat structure is biogenic (Gray, 2002; Thrush and Dayton, 2002). The non-random nature of this contribution will be increased by the non-random nature of many impacts, which often focus on specific habitats or functional groups (e.g., trawling removing all habitat-structuring epifauna, or fishing focussing on large predators). Although relatively few studies have evaluated the functional consequences of realistic non-random changes in biodiversity, Bracken et al. (2008) suggest this can markedly alter conclusions and size of effects predicted. As the consistent conclusion of many studies of species loss due to anthropogenic activities is that coherent changes in species composition are observed as key species are removed or habitats altered (e.g., Thrush and Dayton, 2002; Altieri and Witman, 2006), the focus by theoretical studies on random removal of species becomes problematic. Moreover, our demonstration that habitat variation is a driver of functional composition and diversity also argues for a need to explicitly include habitat heterogeneity within studies trying to predict the effect of species loss on ecosystem function. Acknowledgements The datasets were collected under contract to the New Zealand Foundation for Research Science and Technology. Early work identifying potential habitats in the Tonga Island Marine Reserve was funded by the New Zealand Department of Conservation. Collaboration with John Gray fostered our interest in the role of habitat variation in affecting diversity. 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