The Basics Identification of Functional Group, Intermolecular Forces, Shape and Polarity Question B1 Give examples of molecules that have each of the functional groups discussed in class without using any examples I used. If you find an example that has more than one such group, then all qualify towards the completion of this question. Good places to look are: your text, the CRC handbook, the Merck Index, and the Aldrich Catalog handbook of Fine Chemicals (reference section of the library). Reference your answers with source and page. Answer B1 There are of course, many answers to this question. One thing to watch out for: some more complex functional groups may contain the same atom sequence as another functional group. For example, acetic anhydride and ethyl acetate both look somewhat similar but they are different functional groups. O O O C C O H3C CH3 Acetic Anhydride C H3C O CH2 CH 3 Ethyl acetate Ethyl acetate is an ester. Acetic anhydride is classed as an anhydride, another carboxylic acid derivative. Beware. Question B2 (8 marks) Circle and label by name all of the functional groups present in the following molecules: H C C CHCl H3CH 2C C C OH H O A sedative. C NH2 N An analgesic. Answer B2 H Alkyne H3CH 2C C CHCl C Aziridine. O C C H OCH 2CH3 C NH2 Amide Alkyl Halide OCH 2CH3 Ether Alkene H Alcohol A sedative. H N OH Aromatic ring An analgesic. Aziridine. An amine. 1 Question One (four marks) Give the structures of all of the different possible molecules that have the molecular formula C4H8. You need only show the connectivity, not the 3-dimensional structure. Answer H3C H H2C C C H H C C CH2CH3 H H H C C CH3 CH3 H3C CH3 H H CH3 C CH3 Question (four marks) Draw all of the possible molecules that have the molecular formula C3H8O and identify to which class of compound they belong (i.e. the functional group). Answer H3C H2 C Alcohol C H2 OH CH3 H3C CH Alcohol OH H3C H2 C O CH3 Ether Question Three (4 marks) For each of the following pairs of molecules, indicate which will have the higher boiling point. Explain your reasoning. 1) O H3CCH2 C O OH or H3C C OCH 3 2) H3CH 2C O or CH2CH3 H3C O CH3 Answer 1) The first molecule is capable of forming hydrogen bonds with other molecules of its own kind. These interactions are strong and must be overcome for vapourization to occur. Indeed, carboxylic acids often exist as dimers even in the gas phase. The second molecule lacks any X-H bond (X = N, O, S) and cannot form H-bonds. 2) Both molecules are ethers and cannot form H-bonds. They will have similar dipoles so their dipolar interactions will be comparable. The larger ether will have more substantial London dispersive forces operating, so it will have the higher boiling point. Question Four (ten marks) For each of the following species: a.) Add lone pairs to all atoms such that their octets are full. b.) Add formal charges to those atoms that have formal charges. c.) Indicate the hybridization of all C, N and O atoms. d.) Redraw each of the species showing the proper geometry. Keep as many atoms in the plane of the page as possible and use dashes/wedges (where appropriate) to show 3-dimensional character. Building a model may help. e.) Draw the net molecular dipole for each molecule, if there is one. 2 O H3C CH BF3 H2C=CCl2 H3C CN Answer F B sp3 F C sp2 F sp2 O HH C sp3 H H H sp2 C Cl C sp2 H Cl H H sp3 C H C N sp sp Question B2 Draw three-dimensional structures of the following and show the net molecular dipole. ClHC (both isomers) CHCl O H3C S CH2Cl2 CH3 Answer B2 H H H C C Cl Cl C Cl + Cl C net dipole H O no net dipole H3C S Cl CH3 Cl C H H Dimethyl sulfoxide is actually a tetrahedral molecule due to the presence of a lone pair. The net molecular dipole still runs from S to O. Methylene chloride has a dipole that bisects the Cl-C-Cl bond angle. Question B3 Intermolecular H-bonds are those formed between different (i.e. separate) molecules. Intramolecular H-bonds are formed between functional groups attached to the same molecule. Of the following three molecules: Which form intermolecular H-bonds only with water? Which form intramolecular H-bonds? Which form intermolecular H-bonds with water and with itself? HO OH CH3CH2 N H CH3CH2CH2SH CH2CH3 Answer B3 Intermolecular H-bonds are formed between two or more molecules. These molecules may be the same type of molecule or different. For example, the first molecule shown (1,3-propanediol) can form Hbonds to other molecules of itself (as is the case when it is in its pure state) 3 HO O H H H O O H H O OH OH or with water (when a mixture): Note that BOTH of these cases are examples of intermolecular H-bonds. This molecule has TWO polar functional groups and is also capable of forming an intramolecular Hbond: O H O H Diethylamine can form H-bonds with other molecules that have a polar bond to an H atom; water for example: and with other molecules of its own kind: CH3 H H3CH 2C N H CH2CH3 N H CH3 H H3CH 2C CH3 O H N H CH3 H N CH2CH3 O H The S-H bond of propanethiol is not very polar (the same as a C-H bond, in fact) and for the purposes of this course, we do not consider it to donate H-bonds. It can accept H-bonds to the S lone pairs. For somewhat complex reasons it does form H-bonds in the pure state and with water. Evidence for this is found in the fact that ethanethiol is a liquid while ethane is a gas. Question Show all formal charges on the appropriate atoms in the following molecules. All non-bonding electron pairs (lone pairs) are shown. c.) CH3 C H3C CH3 Cl Cl C b.) H d.) O e.) N(CH3)4 H3C C CH3 : H H N : a.) : H N -1 on N Cl Cl C b.) no formal charges : H : a.) CH3 C+ H3C CH3 +1 on C c.) 4 : Answer d.) O H H3C C CH3 +1 on O e.) N(CH3)4 +1 on N Question Rationalize in terms of intermolecular forces the trends in the boiling points of the following three isomeric amines: H3CH 2CH2C N H3CH 2C H 36° 48°C N CH3 CH3 H H BP: N H3C CH3 3° Answer The ability to form hydrogen bonds is a key factor in determining the physical properties of a compound. Of these three compounds, the latter (trimethylamine) is incapable of forming hydrogen bonds because there are no N-H bonds in the molecule. It is capable of forming H-bonds with other compounds that have N-H or O-H bonds, but not with itself. C-H bonds are so non-polar that they do not participate in H-bonding. With the other two compounds there are several arguments that can be made to rationalize the difference in BP. The first compound (propylamine) has 2 N-H bonds per molecule so you might expect that it will form a greater number of H-bonds than is possible with the middle compound (NMethyl ethylamine). You might also argue that with the longer hydrocarbon chain of propylamine that there is a greater degree of London intermolecular forces possible. Both of these are quite acceptable answers. Question For each of the following molecules, show the hybridization of all non-hydrogen atoms and give the no. of p- and s-bonds in the molecule. Add lone pairs where appropriate. C N HC C O CH2OH H3C C O CH3 N H3C C CH3 Answer sp sp HC sp3 sp3 C CH2OH 7 s, 2 p sp2 sp sp sp2 C N sp2 6 s, 3 p All 6 C atoms are sp2. N H3C sp 3 C sp2 CH3 O sp2 H3C C O CH3 10 s, 1 p 2 3 sp sp 3 sp sp3 21 s, 4 p sp3 5 Question For the following molecules, do the following: a.) add lone pairs to all atoms such that their octets are full b.) determine the formal charge on the atoms in bold type. O H3C S O H3C N CH3 C O O Answer O O C O H3C N H3C S CH3 O 1) This molecule is known as dimethyl sulfoxide. It is very readily absorbed through the skin and has been touted as a cure for arthritis. It has also been explored as an alternative to needle injection method for administering drugs. The formal charges are shown. Note that the S atom is tetrahedral in geometry. 2) This molecule is nitromethane. We did this in class so it should not be a mystery to anyone. The N atom is sp2 hybridized and carries a +1 formal charge. The bottom O atom is sp3 hybridized and carries a -1 formal charge. 3) Carbon monoxide is a fascinating molecule. You will note that the formal charges are -1 on carbon and +1 on oxygen. CO has an unusual affinity for bonding to metals. When it does bond, it bonds through the lone pair on carbon, not on oxygen. Question Identify the bond dipoles and the net molecular dipoles of the following molecules: N H H3C NO2 H H C C C C BF3 C C C N C N H N Answer 1/2 O H3C N O O H3C H3C N O O N O 1/2 Nitromethane (again) has two resonance structures as shown. These are degenerate (equal in energy and therefore equal in importance) and tell us that both oxygens have identical character relative to the center nitrogen. Therefore, there will be significant and identical bond dipoles pointing from nitrogen to oxygen along both N-O bonds. The vector sum of these two bond dipoles is shown. It is colinear with the C-N bond and bisects the O-N-O bond angle. (You should recognize that the four atoms: C, N and the 2 Os are all coplanar. 6 H N H H C C C F C C C N C C N H B F N F The polar bond in this molecule is the C-N triple bond. Bond dipoles are shown and their vector sum is similar in nature to the previous case. The arrangement of the two CN groups (on the same side of the double bond) is known as cis. This molecule, you should know, is flat as a pancake. All atoms lie in the same plane. In this second molecule, the CN groups are on opposite sides of the double bond. This arrangement is known as trans. Because rotation around a C=C bond is a very high energy process (it requires the breaking of the p-bond) cis and trans compounds are not interconvertible at room temperature. The bond dipoles are the same for this compound but this time cancel out when added together. This molecules has no net dipole. An important difference with its very similar isomer above. Boron trifluoride is an unsual compound because it has an electron deficient atom, B, at its center. The B atom has only six electrons (three from B and one from each F atom). Boron is sp2 hybridized (as predicted by VSEPR) and is a trigonal planar molecule. There are bond dipoles point from Boron to Fluorine and since they radiate out in one plane in the manner shown, these cancel such that BF3 has no net dipole. Question Four Give the hybridization of the atoms in each of the following and determine their shape (linear, trigonal planar, tetrahedral). CH3 OH H C O H 1 C H H H H3C NO2 H2C C O H3C N CH3 CH3 CH3 N H3C CH3 H3C 2 O H C C O H 3 H3C N 4 O 1) Both Oxygen and Carbon atoms are sp2 hybridized and they are trigonal planar. This cationic species is flat. 2) All of the carbon atoms and the nitrogen atom are sp3 hybridized. This molecule is analogous to the ammonium cation but with CH3 groups instead of protons. 3) This molecule (known as ketene) is somewhat analogous to carbon dioxide. The C=C=O atoms are linear. The carbon bearing the two hydrogens is sp2 hybridized, as is the oxygen atom. The central carbon has no lone pairs attached to it and is attached to two atoms. This carbon must be sp hybridized. VSEPR predicts that this be linear, and it is indeed a linear molecule (except for the protons). 4) As described in this resonance structure, the top oxygen is sp2 hybridized as is the N atom. The bottom oxygen atom is sp3 hybridized. If you try to take both resonance structures into account here you will have trouble attaching a hybridization label to the O atoms. Just goes to show you what an artificial thing hybridization really is. Question Circle and label all of the functional groups on this molecule and classify them as 1°, 2°, 3° or allylic where appropriate. (Remember that more than one classification may apply, e.g. 2° and benzylic.) 7 O CH3 H3C HO N CH3 HO CH3 CH3CH2 O CH3 CH3 H3C O O O Picromycin was the first macrolide (big ring) antibiotic ever isolated. CH3 b.) Epoxides are cyclic versions of what functional group? c.) H N O This molecule, caprolactam, is the precursor C to Nylon 6. Cyclic versions of this functional group are called lactams. What is the functional group? Answer O Alkene Ketone CH3 3° Allylic alcohol 2°Alcohol H3C HO CH3 CH3 N CH3 HO CH3CH2 O CH3 H3C O Ether ester (lactone) 3° Amine O O CH3 b.) Epoxides are ethers. c.) Lactams are cyclic amides. 8 Ketone Question Identify and label the functional groups present in these molecules. Parthenin (a natural Phenampromide product that causes (an analgesic) contact dermatitus) CH3 HO H CH2 O H3C O N N CH3 C C CH2CH3 O O Epichlorohydrin (used in the manufacture of adhesives) O Cl Answer 3¡ Allylic alcohol HO CH3 Aromatic ring Alkene Alkyl halid Ketone H CH2 O H3C O C O 3¡ Amide 3¡ Amine N Alkene N CH3 Ester (lactone) 9 C O CH2CH3 O Ether Cl Question One (5 marks) Circle and label the functional groups on the following two molecules. CH3CH3 O C N HO N O HO Fentanyl, aka. Sublimaze, a relaxant. C O OH HO CF3 Fluprostenol, a prostaglandin used in treating infertility in mares. Question One (5 marks) Circle and label the functional groups on the following two molecules. 3° Amide O CH3CH2 C N 3° Amine Aromatic ring 2° Alcohol HO Alkene N HO AlkeneHO 2° Alcohol 2° Allylic alcohol Carboxylic Acid OH C O O Ether Aromatic ring CF3 Alkyl halide Question (4 marks) H2C O C HC O H2C O C O O C O The structure above is a triglyceride or lipid. This lipid is an oil. Fats are also lipids but they have fewer carbon-carbon double bonds and tend to be solids. a.) What is it about the structure of fats that makes them solids while oils tend to be liquids? Explain by making reference to the intermolecular forces (i.e. between molecules) involved. You may wish to add to the drawing above to help make your point. b.) How are oils transformed into fats and why is this an important industrial process? Especially in Southern Alberta? Answer a.) The intermolecular forces that keep non-polar molecules such as lipids together are London forces the instantaneous dipole-dipole interactions that occur between chains. The strength of these forces depends on the ability of the chains to lie closely to other chains. The occurence of a double bond introduces a "kink" in the chain which makes close approach impossible and thereby weakens the magnitude of the London force and lowering the boiling point. Unsaturated lipids (those with many kinks) tend to be liquids as a result. 10 b.) Oils are transformed into fats by catalytic hydrogenation. This is how margerine is made. Canola margerine is an important product in S. Alberta. Question Two (4 marks) Of the following two molecules: a.) which will be more soluble in water? Explain. b.) which will have the higher boiling point? Explain. O O C H3C OH 2 Ethanoic Acid . (Acetic Acid) C CH3CH2CH2CH2 OH 1 Pentanoic Acid (Valeric Acid) Answer a.) Acetic acid, which all of you know is very soluble in water, is the more soluble of the two. Valeric acid has the same polar functional group (COOH) which can interact with water, but also has a large non-polar group (CH2CH2CH2CH3) which will be hydrophobic, and render this molecule much less water soluble. We went throught these properties in class using butane, butanol, and ethanol for comparisons. b.) The general trend is that larger, higher molecular weight compounds tend to have higher boiling points. You must realize that both of these molecules have the same polar functional group. Any difference in their boiling point must be due to the alkyl part of the molecule. Van der WŠals forces in the alkyl chain of valeric acid serve to increase its boiling point. Such dipole-dipole interactions are not possible in acetic acid which has no alkyl chain. Question Three (3 marks) a.) Draw three dimensional structures of the following two molecules. Include the lone pairs, which do not appear on these diagrams. O C N H3C Acetonitrile H C CH CH2 Acrolein b.) Label all non-hydrogen atoms with their hybridization (do not draw the hybrid orbitals). H 3 180° sp sp C C N sp H H Acetonitrile O C H Acrolein H All atoms are sp2. C All are trigonal planar with C H 120° bond angles around them. H A few comments based on students answers. I asked for three dimensional drawings of these molecules, so you need to show the linearity of the CCN bonding in acetonitrile, despite the way it was shown in the question. You also need to show the tetrahedral nature of the CH 3 group. Acrolein is a two-D molecule, so the easiest way to draw it is in the plane of the page! All you needed to do then is get the 120° angles correct and you're all set. When discussing the bonding in ethylene in class, I often show this molecule (which is also a flat 2D molecule) in a perpendicular orientation to the page. But I do this only so that the orbitals making up the p-bond would be in the plane of the page. 11 Question Six (3 marks) H H H C C H C C H3C CH3 H H a.) Rank these three molecules in order of decreasing C-H bond length. Explain. b.) Rank these molecules by their relative acidity and explain your reasoning. Answer a.) Rank these three molecules in order of decreasing C-H bond length. Explain. This was discussed in class. Recall that s orbitals are closer to the nucleus and do not have a node at the nucleus, as do p orbitals. Since the C-H bond in acetylene is made from an sp hybrid orbital (50% s character), these bonding electrons are held more tightly by the carbon nucleus. This tends to make the C-H bond a little stronger and shorter than the corresponding bond in alkenes and alkanes. b.) Rank these molecules by their relative acidity and explain your reasoning. The same explanation applies to acidity. When acetylene loses a proton, the carbon bears a negative charge which is localized in an sp orbital. Carbon doesn't like to bear a negative charge but it is easiest to do so in an orbital with more s character because the charge can interact more strongly with the positively charged nucleus. This stabilization of the conjugate base of acetylene means that acetylene is relatively acidic, as hydrocarbons go. In fact, the difference in acidity between acetylene and ethane ismore than 20 orders of magnitude. That's a lot. This was a difficult question, but several students managed to get full marks. Question Two (3 marks) Match the following isomeric compounds with their correct boiling points and melting points. Explain your reasoning. Compounds: 2,2,3,3-tetramethylbutane and octane Boiling point: 106.5°, Melting point: -118.3°. Boiling point: 125.7°, Melting point: -100.7°. H3C CH3 H3C C C CH3 H3C H3C CH3 2,2,4,4-Tetramethylbutane H2 C C H2 H2 C C H2 H2 C C H2 CH3 Octane Answer The only intermolecular forces that apply to these molecules are London forces - the instantaneous dipole-dipole attractions. These forces operate best through a small separation between the C-C bonds, aligned parallel. The branching in the first molecule prevents close approach of the C-C bonds and diminishes the London Forces as a result. The second set of physical data correspond to octane. Question One (8 marks) Circle and label the functional groups present in these molecules and classify them as 1°, 2°or 3° as is appropriate. O H3C O C O CH2CH3 N C N Lofentanyl CH3 12 O H H C C H CH2OH Glycidol Answer Ester O H3C O C ether (or epoxide) 3° Amide O CH2CH3 C N O H H N Aromatic Ring 3° Amine CH3 C C H CH2OH 1° alcohol Question Three (5 marks) Examine the following two compounds. H3C H2 C 1 H3C N H H 2 C H2 H2 C C H2 H2 C C H2 H2 C N H H i.) Which of the two would you expect to be more soluble in water? Explain your reasoning. ii.) Which of the two would you expect to have a higher boiling point? Explain your reasoning. iii.) These molecules are examples of what functional group? Answer i.) Both molecules are amines and can form strong H-bonds to water. Water will solubilize the smaller molecule 1 more effectively, however, because it has a smaller hydrophobic chain. The 7-C chain of 2 will have a greater affinity for other molecules of 2 than it will for water. ii.) Both amine functional groups will have similar intermolecular attractive forces. The larger 2, however, will have more London forces operating due to its longer chain therefore 2 will have the higher boiling point. iii.) They are amines. Question Five (12 marks) For each of the following molecules: i.) draw the molecule in three dimensions (using dashed and wedged bonds). Note: no geometry is implied by the representations given. ii.) if the molecule has a substantial net dipole, indicate this by drawing a dipole vector. If it does not, state: no net dipole. iii.) indicate the hybridization of each non-hydrogen atom. iv.) name the functional group. O 1) H C 3 2) C H H3C OH 3) H3C C C H 13 Answer sp3 O 3 H sp C C sp 2 H H H 3 H sp C HH Aldehyde H sp3 C O H H sp sp C H non-polar H Alcohol C Alkyne v.) Which of the molecules in the Question Five will form hydrogen bonds with other molecules of its own kind? Only the alcohol. vi.) Which will form hydrogen bonds with H2O? The alcohol and the aldehyde. Question Five (12 marks) For each of the following molecules: i.) draw the molecule in three dimensions (using dashed and wedged bonds). Note: no geometry is implied by the representations given. ii.) if the molecule has a substantial net dipole, indicate this by drawing a dipole vector. If it does not, state: no net dipole. iii.) indicate the hybridization of each non-hydrogen atom. iv.) name the functional group. O 1.) H3C C O H 2.) H3C C H 3.) H3C C N H C H v.) Which of the molecules in the above question will form hydrogen bonds with other molecules of its own kind? vi.) Which will form hydrogen bonds with H2O? Answer sp3 H H C sp 2 O H H sp 3 C O sp2 Carboxylic Acid 2 H sp H C 3 H sp C C sp 2 H H H v.) Only the carboxylic acid. vi.) The carboxylic acid and the nitrile. non-polar Alkene 14 H sp3 C sp sp C H H Nitrile N Bonding and Moleculal Orbital Theory Question i) Construct an MO diagram for the Li2 molecule using the valence electrons only and show the atomic and molecular orbitals involved. ii) What is the bond order for the Li2 molecule? ii) Compare your result with the MO diagram of H 2. Comment on similarities and differences. Answer i) Li Li s*2s Li2 2s 2s s2s ii) 1 iii) It looks exactly the same and the orbitals are the same shape. They will be different in energy, though, and since they are made from 2s orbitals, they will be larger than the corresponding orbitals of H2. In principle, there are also p-orbitals just like all of the other second row diatomics. All such orbitals will be empty, though. Question As carbocations go, allyl carbocations are relatively stable while vinyl carbocations are relatively unstable. i.) For the allyl carbocation, how is the carbocation carbon hybridized? ii.) How is the carbocation stabilized by the adjacent double bond? iii.) For the vinyl carbocation, how is the carbocation carbon hybridized? iv.) How does the carbocation interact with the double bond? H H C C H H2C H Allyl carbocation C C H H Vinyl carbocation Answer i.) The carbocation carbon is sp2 hybridized and has an empty atomic p orbital. This empty orbital can align itself parallel to the double bond and be stabilized by overlap with it. H C H C H C H H iii.) In this case the carbocation carbon is sp hybridized, as predicted by VSEPR. The HCC bond is linear. The carbocation carbon uses its two hybrid orbitals to form the s-bonds to H and C. It has two unhybridized p orbitals, the 2py and the 2pz WHICH ARE ORTHOGONAL. One of these orbitals makes up part of the p-bond. 1 The other is vacant, and because it is orthogonal to the p-bond IT CANNOT OVERLAP WITH IN ANY WAY and therefore cannot derive any stabilization. p-bond in plane of page H C C H H C C H H H p-orbital perpendicular to page Question (4 marks) Sketch on the diagram below the atomic orbitals (on the right), and the molecular orbital (on the left) that make up the C-O p-bond of formaldehyde. Oxygen is more electronegative than carbon and this should be taken into account in your drawing. H H H C O H C O Answer H H H C O C H O The resulting p -bond is polarized toward the O atom as you'd expect on the basis of O's electronegativity despite the smaller size of the atomic p-orbital. Question (3 marks) The molecule shown below is called allene. It is in a class of molecules known as cumulenes. i.) What is the hybridization of each of the three carbon atoms? ii.) Draw a picture of allene (using wedge/dash bonds if necessary) to indicate its structure. You probably want to build a model of this molecule. iii.) How are the p-bonds of allene oriented with respect to one another? H2C C CH2 Answer i) The central C atom is sp hybridized - the other C atoms are sp2 hybridized. ii) H H H C C C H H H C C C H H iii) They are at right angles to one another. In the diagram above the p-bond on the right is in the plane of the page - the one on the right is orthogonal to the page. 2 H H H Csp H 2 Csp Csp 2 H The s-framework. H C C C H H The atomic orbitals making up the p-bonds. Note that the two p-orbitals that result must be orthogonal to each other. Question (8marks) The carbon-carbon double bond of ethylene consists of two different types of bond, given the symbols s and p. H H C C H H i.) How are the carbon atoms hybridized? ii.) Sketch the orbitals (atomic and/or hybrid orbitals) that are used to form the s bond and sketch the bonding molecular orbital that results from their overlap. iii.) Sketch the orbitals (atomic and/or hybrid orbitals) that are used to form the p bond and sketch the bonding molecular orbital that results from their overlap. iv.) Which of the two types of bonds (s or p) is stronger and why? v.) Rotation of the carbon-carbon bond in ethylene is not possible. Explain making reference to the bonding. Answer i) They are sp2 hybridized. ii) H H C C H H 1s atomic orbital H C sp2 hybrid C H H H iii) p-bond Unhybridized atomic p orbitals H H C C H H H H C C H H iv) Because s-bonds result in enhanced electron density in the region of space directly between the two positive nuclei, they will be stronger. The enhancement of electron density in the p-bonds is above and below the plane - less direct, therefore a p-bond is not quite as strong. Do not confuse the strength of a double vs. a single bond with this question. Double bonds are stronger than single bonds because they are composed of a s- and a pbond. 3 v) Rotation of one end of ethylene destroys the overlap of the atomic p-orbitals necessary for the formation of a p-bond. Effectively, the bond must be broken for rotation to occur. Question (8marks) The carbon-carbon triple bond of acetylene consists of two different types of bond, given the symbols s and p. H C C H i.) What is the hybridization of the carbon atoms? ii.) Sketch and label the atomic orbitals of carbon that are used to form the two hybrid orbitals and sketch the hybrid orbital(s) that result from them. iii.) Sketch the C-C s bonding molecular orbital that results from the overlap of the two hybrid orbitals. iv.) Sketch the atomic orbitals that are used to form one of the p bonds and sketch the bonding molecular orbital that results from their overlap. Answer i) They are sp hybridized. ii) Usually omitted for clarity. 2s C C 2p C 2 sp hybrids C 2p 2s iii) C C C C s-bond 2 sp hybrids iv) p-bond Unhybridized atomic p orbitals H C C H H C C 4 H Question Shown below is the MO diagram for the p-bond in cis-2-butene. i.) On the left diagram, sketch the two molecular p-orbitals and the atomic orbitals from which they are derived. ii.) Add the electrons to the diagram. iii.) If cis-2-butene is irradiated with UV light, then a facile bond rotation is possible: H H hn H C C H3C CH3 C C CH3 H3C H The light converts cis-2-butene into its first excited state (an electron excited state). In the right diagram, show what has happened to the electron distribution in the p-MOs upon excitation. v.) Why is bond rotation facilitated by irradiation? Answer ii and iii) C C p* p* p C p Ground state: p bond order = 1 C Excited state, p bond order = 0 v) This excitation does not effect the s-bond. But the p-bond order becomes zero since there are now equal numbers of bonding and antibonding electrons. The C-C bond effectively becomes single in character. 5 Question Sketch the bonding molecular orbital (MO) formed from the overlap of a N sp3 hybrid and hydrogen 1s atomic orbital. N H Answer N H Question (four marks) Metal carbonyls such as Fe(CO)5 are compounds made from transition metals and carbon monoxide. It is believed that part of the metal-carbon bond results from the overlap of a filled (with electrons) dxy Fe orbital with the p* orbital of carbon monoxide. These orbitals are shown below. CO OC Fe CO CO Fe C O Fe C O CO Fe(CO)5 a.) b.) c.) d.) Sketch the bonding molecular orbital that results from the overlap of these two orbitals. Does this MO resemble more closely a p-type or a s-type orbital? Why? Draw lines to show the position of all nodes. Which is longer: the C-O bond length in free carbon monoxide or the C-O bond length in Fe(CO)5 ? Explain your answer. Answer a) Fe C O Fe C O Nodes b) It is not radially symmetrical and has a node in the plane of the Fe-C bond. It is a p-type of orbital. c) Shown above. d) The orbital drawn above is bonding with respect to the Fe and C atoms, but anti-bonding with respect to the C and O atoms. If this orbital is populated with electrons, then you'd expect to see a weakening and lengthening of the CO bond. 6 Resonance Structures Arrow Pushing Practice The following is a collection of ions and neutral molecules for which several resonance structures can be drawn. For the ions, the charges can be delocalized implying greater stability; for the neutral molecules, electrons can be shuffled around to show areas of high or low electron density. Use electron arrows to show how one resonance structure can be transformed into another. In this example, a lone pair of electrons on an O atom is delocalized onto another O atom through the psystem as shown. Note that the arrows start at a pair of electrons. These resonance structures are used to explain the acidity of the carboxylic acid functional group. O H 3C For example: O C H 3C O C O The resonance structures below show how a charge-separated resonance structure can be drawn for a neutral molecule. This additional resonance structure suggests that the electron density is high on the carbon that bears a negative charge. Indeed, there is spectrascopic evidence that confirms this and this carbon acts as a nucleophile in many reactions. Note that the electron pushing is identical to that in the example above. H 3C O H 3C C O CH2 C CH2 H H The following resonance structures depict the allyl cation. Allyl cations are relatively stable (as cations go) due to delocalization of the positive charge. In this case, the p-electrons move towards the electron deficient carbon atom. Again, the arrow starts at an electron pair - the p-electrons in this case. H 2C CH2 CH2 H 2C Look for the similarities in these electron movement processes. There are only three basic kinds of electron movements in all of these examples: movement of a lone pair of electrons towards a p-bond, movement of a pbond towards a carbocation or movement of a lone pair towards a carbocation. The next example shows how an electron-deficient carbocation is stabilized by an adjacent atom that bears a lone pair. Again, note that the arrow starts at an electron pair. The resulting resonance structure is a very important one since, unlike the original (left) structure, all atoms have their octets. OH H OH C H H C H In the vinyl cation, the positive charge cannot be delocalized by the p-electrons because the empty porbital on C is orthogonal to the electrons in the p-bond. H C C H H 1 Armed with these examples, you should be able to discover all of the resonance structures of the following molecules. Enjoy. The allyl anion: The conj. base of nitromethane: The pentadienyl cation: H O H H 2C C H 2C N H 2C O CH2 The phenoxide anion Aniline: H C C C H The benzyl cation: Conj. base of acetaldehyde (ethanal) O CH2 NH2 (Conj. base of phenol) CH2 O H 2C The propargyl cation: Protonated acetone: C C CH2 H 3C CH3 O O C H H N H O O C H 3C C C OH C H 3C C H OCH3 H C 3 H H N H 3C O C H O CH3 H Conj. base of propionitrile: OH H C C N H 2 C NH2 Question In each of the following, judge which of the resonance structures are more or less important contributors than the others. Explain your reasoning. : + H2C CH CH2 _ O : : O H3C C +O CH3 : : CH3 H3C C + O : : : : : H3C C O CH3 _ : : O c.) CH2 : + b.) H2C CH CH2 + H3C O : : : + CH2 a.) H3C O Answer a) The left-hand structure has an electron deficient carbon where the right-hand structure has complete octets for all atoms. This makes the right-hand structure more favourable, even though it puts a positive charge on oxygen. b) These structures are degenerate (equal). Please note that these are DIFFERENT RESONANCE STRUCTURES NONETHELESS. These structures imply that the charge is delocalized over 2 carbon atoms, and indeed, this kind of carbocation (called an allylic carbocation) is resonance stabilized. c) The first structure is most favoured. It has no electron-deficient atoms, nor does it have any charge separations (as the third structure has). The third structure is favoured over the second (middle) structure for the reasons outlined in (a) above. Question Six For the following sets of resonance structures, check to see that all structures are valid according to the rules set out in your text. If they are not valid, indicate why not. H i.) H O C O C H H C H H O ii.) H C O H iv.) H 3C N (Formal charges O are omitted.) H 3C N O O C H H H iii.) C O O H C O C C . H H O C O O C O Answer i.) These are not resonance structures because a proton is shifting its position. This violates Rule 2. The process shown does take place but it represents a chemical equilibrium between two distinct chemical species. This is known as a tautomerism; in this case an enol-keto tautomerism. ii.) This looks a lot like (i.) but without the proton shift. These are valid resonance structures for a species known as the enolate anion, very important in carbonyl chemistry. iii.) If you count the electrons around the O atom with the negative formal charge you will note that it comes to 10, 2 more than an octet. This is not valid for 2nd row elements (see Rule 4). iv.) The structure on the left has two more electrons that the one on the right. This violates Rule 3. If you worked the formal charges out you probably noticed that these two species have different overall charges. That's not allowed either. 3 H3C O H3C CH2 O CH2 : a.) : : Question Four (four marks) Explain your reasoning. For the two species shown, evaluate the resonance structures and determine: i.) which atom bears most of the charge in the species? ii.) does the oxygen-CH2 bond length correspond more closely to a single or a double bond? Answer The right hand resonance structure contributes more to the character of this species since all atoms have their octets. As a result, the O atom clearly bears most of the charge and the O-CH2 bond length will be closer to double bond length. Question Five (six marks) The following are all valid resonance structures for methyl isopropenyl ether. All non-bonding electrons are shown. H3C O H3C C H3C O CH2 C H3C 1 H3C O CH2 C H3C 2 CH2 3 a) Rank them in decreasing order of importance, i.e. which structure contributes most to the character of this molecule, etc. Explain your reasoning. b) What do these structures imply about the C=C bond length? Answer Structure 1 is best since it is uncharged and all atoms have their octets. Structure 3 is next best because all atoms have octets. Structure 2 is the least important since carbon is electron deficient. These structures imply that there is a small amount of double bond character in the carbon-carbon bond making it a little shorter. : : Question One Give all reasonable resonance structures of the following. a) [H3COCHOCH3]+ b) [CH2NO2]c) d) O O C H N H3C S O : H3C H O 4 H3C C CH3 O H3C C H b) H2C H N : : O C H3C H3C H O S H N H d) CH3 H O H3C : C C O : : H3C H3C N O O CH3 O O N c) O H O H2C : : O : : O C N H This structure not always shown. O H3C O O S H : O : : : : a) : : Answer O H3C O O S O O Question The following pairs of resonance structures describe the molecule acetone (I) and protonated acetone (II). O I H3C C O II H3C C O CH3 H3C C H O CH3 H3C C CH3 H CH3 Examine the two pairs of resonance structures. Which the these two species (I or II) has the most electrophilic character? (In both cases, the right-hand structure has a carbocationic carbon that is capable of acting as an electrophile. You must keep in mind the rules for determining the "favourability" of certain resonance structures over others and also that molecules are hybrids (sort of weighted averages) of their resonance structures.) 5 Answer This is an important point but a tricky thing to perceive. We are comparing two species (I and II) each of which is represented by two resonance structures. In each pair of resonance structures, the left-hand structure is the one that contributes the most character (because all atoms have full octets). Comparing the right-hand structures, we note that for I we have a destabilizing charge separation and an electron deficient carbon while for II we have no charge separation, only the electron-deficient carbon. As a result, the right-hand structure of II contributes more to the character of II than the right-hand structure of I contributes to the character of I. Since the right-hand structure in each case is the one which has the electrophilic carbocation character, this means that II will be more electrophilic than I. Question (5 marks) a.) Rank the following resonance structures for this molecule in order of importance _ _ and state your reasoning. O O H H C N+ 2 H H H C N 1 O H C N H H + 3 . H b.) The molecule above can act as a Bršnsted base. Will it accept a proton on the O atom or the N atom? Explain your reasoning. Question Seven (5 marks) a.) Rank the following resonance structures for this molecule in order of importance _ _ and state your reasoning. O O H H C N+ 2 H H H C N 1 O H C N H H + 3 . H b.) The molecule above can act as a Bršnsted base. Will it accept a proton on the O atom or the N atom? Explain your reasoning. Answer a) The structure 1 is the most important contributor to the character of formamide. All atoms have octets and (unlike the latter two structures) there are no charge separations (see Rule 5). The next most important contributor is the middle structure. While it has a charge separation (making less important than the first structure) all atoms have complete octets (unlike the third structure). Another way of noting this is that it has one more bond than the last structure (three lines as opposed to only two). See Rule 4. The least important contributor is the last structure. It has a charge separation and also has an electron deficient carbon atom (having only six electrons; the carbon bearing the positive charge). b) To figure this out, you might have looked at the resonance structures of the conjugate acid of this compound that result from protonation on the O atom vs. protonation on the N atom. For O atom protonation there are three possible structures: + OH OH H H C N 1 H H C N+ 2 H H For N atom protonation there are only two: O OH C N H H + 3 . H _ O H C N H H + + 3 . H H H H C N+ 1 H 6 As a result, it is clear that the conjugate acid which results from protonation on the O atom is more resonance stabilized than that resulting from N protonation. This will make the O atom effectively more basic. Note, that this is opposite to the case described in question 4, where resonance factors are not involved. Question One (6 marks) i.) What functional group does this molecule contain? ii.) Rank the following resonance structures in order of importance by saying which one contributes most to the character of this molecule, and which contributes least. Explain your reasoning. H3C O O C C 1 O CH3 H3C O O CH3 2 H3C C O CH3 3 Answer i.) It is an ester. ii.) Structure 1 is best since there are no charges and no electron deficient atoms. Structure 2 is the smallest contributor since it has an electron deficient C atom and a charge separation. Structure3 is intermediate between 1 and 2 because it has a charge separation but more bonds (no electron deficient atoms) as does 2. Question (6 marks) The following resonance structures are used to describe the molecule diazomethane. It is a bright yellow, volatile, toxic, explosive and useful material. H2C N N H2C N N i.) Indicate the presence of any formal charges on these resonance structures by placing + and/or - signs above the appropriate atoms. Show all such charges in both structures. ii.) What is the hybridization of the central N atom? iii.) Which resonance structure contributes more to the character of diazaomethane: the one on the left or the one on the right? Explain your reasoning. iv.) Indicate in which direction the net molecular dipole of diazomethane points by labeling one of the structures with a dipole vector. v.) Where would a proton, H+, attack this molecule: on the C atom, the central N atom or on the terminal N atom? Answer i.) H2C N N H2C N N ii) It is sp hybridized. iii) Both structures are the same in terms of charge and the number of bonds. The left hand structure is best, in that the negative charge is located on the more electronegative atom. iv) Based on which structure dominates the character of this molecule, one would draw a dipole pointing from carbon to nitrogen. v) Dizaomethane protonates on carbon since C- is more basic than N- (C less electronegative than N). 7 Question (6 marks) i.) Rank the following resonance structures in order of importance by saying which one contributes most to the character of this molecule, and which contributes least. Identify any degenerate (equivalent) structures. Explain your reasoning. O H3C O C O CH3 1 H3C O O C O CH3 H3C O 2 O C O C O CH3 H3C O O CH3 4 3 Answer Structure 2 is the least important contributor (has fewer bonds - electron deficient carbon and bears charges). Structures 3 and 4 are degenerate (contribute equally). They have the same number of bonds as structure 1 but have charges present. Structure 1 is the most important contributor. No charges and no electron deficient atoms. Question (6 marks) The following resonance structures are used to describe the molecule methyl isocyanate. It is the toxic gas that was at the root of the Bhopal disaster. H3C N H3C C O N C H3C N O C O i.) Indicate the presence of any formal charges on these resonance structures by placing + and/or - signs above the appropriate atoms. Show all such charges in all structures. ii.) What is the hybridization of the central C atom? iii.) Of the two, which resonance structure contributes more to the character of methyl isocyanate: the one on the left or the one on the right? Explain your reasoning. iv.) Indicate in which direction the net molecular dipole of methyl isocyanate points by labeling one of the structures with a dipole vector. Answer I) H3C N H3C C O N C H3C N O C O ii) It is sp hybridized. iii) Both structures have the same number of bonds and same charges. The best structure will have the negative charge on the more electronegative atom. That would the the left hand structure. iv) The dipole should point towards the O atom. Question N2O is a linear molecule in which the atoms are ordered NNO. Draw the resonance structures for this molecule and indicate which contribute more to the character of this molecule. On the basis of this, what net dipole would you expect for this molecule? :N _ + N O: : : : : + N N O : _ : Answer The two resonance structures are: In both cases all atoms have their octets. In both cases their are two charges, one of them being a positive charge on the central N atom. The difference, then is the placement of the negative charge. This charge will prefer to sit on the more electronegative oxygen atom, therefore the right-hand structure will be major resonance structure and the net molecular dipole will point toward the O atom. Other valid resonance structures can be written but they involve large charge separations or incomplete octet atoms. 8 Alkanes/Nomenclature Question Draw the following molecules and, if necessary, give correct names to them. a.) 3-ethyl-4-methylpentane b.) 5-neopentyldecane c.) 2-ethyl-2,4,6-trimethylheptane d.) 3,4-dimethyl-1-isopropylcyclohexane (ignore cis/trans isomers) e.) 3-butyl-2,2-dimethylhexane (f.) cis-3-methyl-3-pentene Answer a) b) CH2 H3C C c) 3,3,5,7-tetramethyloctane CH3 3-Ethyl-2-methylpentane CH3 CH3 e) d) f) 4-t-butyloctane cis-3-methyl-2-pentene Question (7 marks) a.) Give systematic names for the following compounds. Do not include any stereochemical descriptors (i.e. configurational symbols R or S, E or Z). (a.) H2 C H3C CH CH3 (b.) F (c.) H3C CH3 CH3 CH3 Answer a) sec-butylbenzene (or s-butylbenzene) b) 2-fluoro-3,5-dimethylhexane c) 2-methylisopropylcyclopentane 1 H3C Question Give acceptable IUPAC names for the following eight molecules. b) a) H3CH2C CHCH CH3 CH2CH3 CH3 3 H3CH2CH2 C CH CH2CH3 C C C CHCH2CH3 H2 H2 CH3 CH2CH2CH3 H f) CH3CH2HC d) BrH2CH2CH2 CHCH3CH2 CH2C C C c) H C C ClH2 CH2CH2C e) H C C H H H3CH2CH2 C H C g) H3CH2CH2 C CH2CH(CH3)2 C CH2CHBrCH2 CHCH3 CH2CH3 Answer a) 4-ethyl-4-methylheptane b) 3-ethyl-5,5,7-trimethylnonane c) cyclopropylethyne d) 8-bromo-6-methyl-1-octyne e) 2-propyl-5-chloro-1-pentene f) trans-3-isobutyl-6-n-propylcyclohexane g) cis-7-bromo-9-methyl-4-undecene Question Two (7 marks) a.) Give systematic names for the following compounds. Do not include any stereochemical descriptors (i.e. configurational symbols R or S, E or Z). (a.) (b.) CH2CH3 CH2CH3 H3C (c.) CH CH CH2 CF2 CH3 CH3 C CH3 CH3 CH2CH3 Answer a) ethylcyclobutane or cyclobutylethane b) 4-ethyl-2,2-difluoro-5-methylheptane c) t-butylbenzene Question (4 marks) Name the following compounds. H Br CH3 a.) H3CH 2CH2C C CH CH(CH 3)2 H CH2CH2CH3 c.) b.) 2 d.) H3C CH2Cl Answer a) 3-bromocyclohexene b) 4-isopropyl-5-methyloctane c) vinylbenzene or phenylethene or phenylethylene d) 1-chloro-1-butyne Question (7 marks) a.) Give systematic names for the following compounds. Do not include any stereochemical descriptors (i.e. configurational symbols R or S, E or Z). (a.) CH2CH(CH3)2 CH3 (b.) F (c.) CH3 H3C CH3 Br CH3 Answe r a) isobutylbenzene b) 5-fluoro-2,3-dimethylhexane c) 1-bromo-2-methylcyclobutane Question (7 marks) a.) Give systematic names for the following compounds. Do not include any stereochemical descriptors (i.e. configurational symbols R or S, E or Z). (a.) H2 C H3C CH3 (b.) CH F H3C (c.) H3C CH3 CH3 CH3 Answer a) sec-butylbenzene or s-butylbenzene b) 3,5-dimethyl-2-fluorohexane c) 2-methylisopropylcyclopentane Question (3 marks) Give systematic names for the following compounds: Br F Answer a) 5-methyl-1-fluoroheptane b) isopropylcyclopropane c) 4-ethyl-2,2-dimethylhexane d) 3-bromocyclohexene Question (2 marks) Draw the most stable and least stable conformers of 2,3-dichlorobutane using Newman projections. Methyl groups are bigger than chlorines, by the way. 3 Answer CH3 Cl H H H H Cl CH3 CH3 CH3 Cl Cl Most stable Least stable Question Shown below are two isomeric decalins. Which one is more stable? Explain. H2 C H2C H2C C H2 H H2 C H2 C C CH2 H2C C CH2 H2C H C H2 C H2 H H2 C C CH2 C CH2 H C H2 cis-Decalin trans-Decalin Answer H H H H H trans-Decalin H cis-Decalin Note that this C-C bond is axial. This has the same effect as an axial substituent in that it interacts sterically with the 1,3-hydrogens. This destabilizes this isomer relative the the trans-isomer which lacks any 1,3-diaxial interactions. Question Two (nine marks) a.) Give systematic names for the following compounds. Include any stereochemical descriptors (i.e. configurational symbols R or S, E or Z) where possible. Part (c) is not a Fischer projection. (a.) F H (b.) H2 C H3C CH3 CH C H2 CH3 CH CH CH3 H3C CH2 Answer a) trans-1-fluoro-3-methylcyclopentane b) 6-ethyl-3,5-dimethylnonane c) sec-butylbenzene or s-butylbenzene 4 H H3C C CH2CH3 CH3 H2 C H2C H (c.) Question a.) Sketch the conformational energy diagram for rotation about the C1-C2 bond of 1,1- dichloropropane. b.) Label the diagram with Newman projections corresponding to the relative minima and maxima. c.) Identify the eclipsed and the staggered conformations. H H 1,1-Dichloropropane H3C C CHCl2 Answer Eclipsed Eclipsed Cl H Staggered Cl ∆E H H H Staggered Cl H H Eclipsed Cl H Cl CH3 Cl CH3 H Cl H CH3 CH3 H Cl H H Staggered Cl H Cl H Cl Cl H H CH3 CH3 H H Question Four (3 marks) Draw the Newman diagrams (looking down the C2-C3 bond) for: a.) the lowest energy staggered conformation b.) the lowest energy eclipsed conformation of 2,3-dimethylbutane. CH3 H3C CH CH CH3 2,3-Dimethylbutane CH3 c.) Draw the most stable conformation of cis-1-t-butyl-4-methylcyclohexane. t-Bu Me Answer a) CH3 H3C H H b) c) H3C H CH3 H CH3 CH3 H3C CH3 Lowest energy staggered. Lowest energy eclipsed. CH3 H C(CH3)3 H 5 The t-butyl group is much larger and will prefer to be equatorial. This forces the CH3 group to be axial. If both groups to be axial, one would need a different molecule. Question (4 marks) a.) Give a systematic name for the following molecule and, also, in addition, draw it in its most stable conformation. CH3 H3C C CH3 Br b.) Give a systematic name for the following molecule and, also, in addition, draw the Newman projection (along the C2-C3 bond) of its most stable conformer. Answer a) H C(CH3)3 Br H H H b) 2-Methylbutane CH3 CH3 H CH3 Question In a study of the acidities of alcohols, it was desired to compare the acidities of hydroxyl groups in the equatorial and axial positions. The equatorial case is easily measured since, in cyclohexanol, the hydroxyl group prefers to adopt an equatorial position. What structurally modified cyclohexanol would be useful in determining the acidity of an axial hydroxyl group? Explain your reasoning. Answer A couple of possibilties, both of which involve placing another substituent on the ring that has a strong preference for the equatorial position. OH OH H t-Bu H H a trans-decalin 6 Stereochemistry Question Consider cis-1,2-dimethylcyclohexane, shown below in its chair form. CH3 H cis-1,2-dimethylcyclohexane CH3 H i.) Is this conformation chiral? ii.) Is this molecule chiral? Why or why not? Answer Yes, this conformation is chiral because its mirror image is non-superimposable. The molecule is not considered chiral because these mirror image conformations can be converted into each other simply by ring inversion. You can also orient this molecule in the following conformation H3C CH3 H H mirror plane . In this conformation it is obvious that this is a meso compound. A good rule to remember is that if a molecule has any conformation in which it is achiral, then it is an achiral molecule. Question You dissolve 65.3 mg of camphor in 100. mL of methanol and measure (in a 1.00 dm sample tube) the optical rotation to be -2.88°. What is the specific rotation of camphor? Watch your significant figures, folks. Answer [α ]oD = α lc [α ]oD = −2.88° = −44.1° 0.0653g / 100mL ·1.00dm Question For each of the following pairs of molecules, identify the stereochemical relationship. Are they enantiomers, diastereomers, constitutional isomers (isomers with differing connectivity), or the same molecule. Building models of these will be a real help. ALSO IDENTIFY ANY MESO COMPOUNDS AS SUCH. a.) CHO H3C OH H CH3 H CHO OH As you can tell, these are Fischer projections. c.) H HO Cl HO Cl H d.) Br Br Br Br H b.) H 1 H H H Cl Cl Cl Cl H e.) H F H F CH2OH HOCH2 HO OH H g.) H3C H3C Cl H3C H H3C Cl H Answer a.) CHO H3C OH H H F HO H H H f.) h.) H CH3 H CH3 HO H F CH3 H F F CH3 H CH3 H CHO OH These are enantiomers. You may have noticed that one diagram can be converted into the other simply by rotating 90°. You can't do that with As you can tell, these are Fischer projections. Fischer projections. Remeber what how these projections are defined. CHO H3C OH H CHO CH3 CHO Rotate 90° H CHO H3C OH≠ H3C OH OH H H b.) HO c.) These are constitutional isomers. In the first molecule, the double bond is closer to the HO group; in the second it is closer to the Cl group. The connectivities Cl are therefore different. HO Cl H H These are enantiomers. Note that the other chair conformers of these molecules have both bromines axial, but these conformers are also going to be enantiomers. Br Br Br Br H H d.) H H H Cl Cl Cl e.) H F H Cl One is cis and the other trans-1,3-dichlorocyclobutane. They are stereoisomers in that the connectivities are the same. They are obviously not enantiomers, so H they must be diastereomers. H I love this question and use it every year. As F drawn these clearly are mirror images of each CH2OH HOCH2 OH H HO H other. But if you look carefully, there is no stereocenter in this molecule. This is obvious H if you draw it another way: H F CH2OH These represent the same molecule. This CH2OH is a wonderful example of how drawings can mislead you. If you got this wrong, and most of you will, take comfort: I blew it too. 2 f.) H F HO H F top stereocenter is different, the bottom one CH3 The is the same. These are diastereomers. H CH3 CH3 HO H CH3 g.) H These are planar molecules and have no Cl H3C H3C H3C stereocenters. E/Z isomerism is not possible since the left end of the double bond has two H3C Cl identical substituents. If you flip one of these over, it will be obvious that these are the same molecule. These are different drawings of the same molecule. F H This molecule lacks stereocenters and has an internal mirror plane of symmetry that runs through the CF bond and chops the ring in half. H h.) H F Question Give the configurational symbols (E/Z, R/S) for all of the stereocenters in each of the following molecules: a.) CHO H3C b.) H C 3 Cl OH H H CH2CH3 Answer 2 a.) CHO H c.) Br Br d.) HO O H H The Parity rule works well for Fischer projections. Recall that the horozontal bonds are coming towards you. This will H3C OH give the sequence 1432 as one possibility and 3421 as the other. 3 This molecule is S. H4 1 b.) 1 1 H3C Cl H After prioritizing each end of the double bond, we find both top priority groups on the same side. This molecule is Z. CH2CH3 2 H R c.) The best way here is to build a model and figure this out. Note that for this molecule, both symbols had to be the same. If they were opposite, then this would be a meso-compound. Br Br R H The problem here is distinguishing between the 2nd and 3rd priority groups. I guess the easiest way to explain this is to point out 4 that in one case you follow the sequence H R 2 C-O-C (as you go around the ring) HO 3 and the other way you go C-O-H. Since C has priority over H, the former path has higher priority. d.) 1 O 3 Question Assign configurational symbols to the following. CH3 H 3C N H CH 2 H 3C C C H 2C H H O OH H OCH3 C H 3C Darvon, a painkiller OH H O O H 3C CH3 H CH3 Isomenthol: a terpene, whatever that is. O ClCH2CH2 C C COOH H C N H CH3CH2 H 2N COOH H OH H CH2OH HO (-)-Serine, one of H those nifty amino acids L-Proline H Cl CH2CH3 OH H Br H 3C O H H CH3 H H OH O O H HO H C CH3 H NHCOCHCl2 F F CH2OH Chloramphenicol, an antibiotic used in the treatment of typhoid. 4 CH=CH-CH=CH2 Answer H 3C N H CH3 CH2 H 3C CR C S H 2C H H R O OH H Darvon, a painkiller OCH3 C H 3C H R S O O H 3C CH3 S R CH3 Isomenthol: a terpene, whatever that is. H O ClCH2CH2 COOH Z C C S N H H L-Proline H Cl H 3C Z H 2N COOH H CH3CH2 O R R H OH C S OH H CH2OH (-)-Serine, one of HO those nifty amino acids H OH R S H Z H R CH2CH3 H Br R CH3 H OH O O H HO H R C R H R R NHCOCHCl2 R CH2OH F F Chloramphenicol, an antibiotic used in the treatment of typhoid. 5 CH3 R CH=CH-CH=CH2 Question What is the stereochemical relationship between the following pairs of molecules? i) ii) Br Cl H H CH 3 CH3CH 2 Cl H iii) Br CH 2CH 3 CH 3 H iv) Cl CH 3 H Cl H COOH CH 3 COOH OH H HO HO H v) H H OH vi) H H H H H H 3C CH3 H 3C F F H CH 3 H F viii) O O CH3 CH3 O Cl H Cl Cl H CH 3 H H H H O H H 3C Cl ix) H x) Cl Cl Cl H Cl CH3 CH 3 CH 3 H H H H H 3C H H CH3 Cl H H CH2Cl xi) H 3CH 2C H 3C CH 3 CH 2CH 3 H 3C CH 2CH 3 H 3CH 2C CH 3 Answer i) identical molecules ii) enantiomers iii) enantiomers v) same molecule (a meso compound) vi) diastereomers viii) rotational isomers of the same molecule ix) enantiomers x) constitutional isomers xi) identical molecules 6 H F H H vii) F iv) enantiomers vii) enantiomers F Question (7 marks) Examine the following pairs of molecules. a.) What is the stereochemical relationship between the following pairs of molecules? Are they constitutional isomers, the same molecule (note: changing the conformation of a molecule does not make it a different molecule), enantiomers or diastereomers. b.) Clearly identify all meso compounds. a.) H3CH 2C H c.) CH3 OH CH3 H H3CH 2C CH3 Br b.) OH H CH3 H3C H Br H Br H Br Cl Cl H CH3 H3C H CH3 d.) H Cl CH3 CH3 Br e.) H Cl H H Br Answer a) same molecule b) enantiomers c) diastereomers, the left hand molecule is a meso compound d) same molecule, a meso compound e) same molecule Question The isolation of Cordycepic acid from a fungus was reported in the Journal of the American Pharmaceutical Association, 46, 114, (1957). It was found to be optically active with [a]26 = +40.3°. It was assigned the structure shown below in which all four hydroxyl groups are equatorial. HO HO HO O OH OH Should you believe everything you read? Elaborate making reference to the above example. 7 Answer This compound has several (two) chiral centers but also has an internal mirror plane of symmetry. It is achiral and cannot possibly be optically active. HO HOCO2H O OH HO OH HO HO OH OH Question 1.) Convert the following structure of Sorbitol, a sugar derivative and artificial sweetener, into its corresponding Fischer diagram. CH2OH OH H OH H CH2OH HO CH2 H OH H OH CH2OH Is Sorbitol chiral, yes or no? (three marks) Answer CH2OH OH H OH H HO CH2 H OH H H CH2OH HO H OH H CH2OH OH H or HO H HO H OH H OH HO CH2OH OH H CH2OH These are the same: take one and rotate by 180°. Yes, it is chiral. 8 Question a) Complete the Fischer projection diagrams for the two compounds shown below. H OH O HOCH2 H H OH H Reduction H OH HOCH2 OH CH2OH H D-(+)-Xylose OH H "Xylitol" CHO OH CH2OH CH2OH CH2OH b) Reduction of D-(+)-Xylose (a sugar, [a] = -9.3°) gives Xylitol (an artificial sweetener) which has no measurable optical activity. Why not? The product belongs to a special stereochemical class. What might that be? Answer Xylitol has an internal mirror plane of symmetry that xylose does not. Xylitol is a meso compound and therefore lacks any optical activity. 24 D-(+)-Xylose CHO H OH HO H H OH CH2OH "Xylitol" CH2OH H HO OH H H OH CH2OH Question Five (3 marks) a/) When looking at the structure of a molecule, how does one determine the maximum number of possible stereoisomers? b.) When is the actual number of stereoisomers less than that predicted by the procedure outlined in (a)? Answer a) One counts all of the chiral centers and double bonds that are E or Z. If we let n = the sum of these two numbers, then the maximum number of stereoisomers is 2n. b) If some of the stereoisomers are meso compounds, then this will reduce the total number of possible stereoisomers. Question Six (4 marks) a.) Examine the molecule below (drawn in 2-D). Is this molecule really flat? If not, draw it in three dimensions using dash/wedge bonds to present a more accurate descriptiton. Building a model is highly recommended. c.) Is this molecule chiral? b.) Label (single examples will suffice; you CH3 H need not label all examples): i.) a primary (1°) H atom ii.) an sp2 hybridized C atom iii.) a vinyl H atom H H3C iv.) an allylic C atom 9 Answer vinyl H 1° H atoms sp2 C H CH3 H3C H allylic C c) This molecule is not superimposable on its mirror image, therefore it is chiral (even though it has no chiral centers - remember chirality is a property of objects). Question Assign configurational symbols (R/S or E/Z) to the following molecules but do not name them. H OH H3C Br H H O H H3CH 2C H C C H C CH2CH3 H H CH3 Answer H 1 3 H3C R H 1 OH Br H 4 PR: 3124 = 2 = R H H S H3CH 2C 2 3 2 H3C 4 O 2 PR: 4123 = 3 = S 1 H C H 1C Z C H 2 CH2CH3 H 2 CH3 1 R Br H4 3 PR 4321 = 6 = R PR means using the parity rule. You may have gotten a different sequence BUT the first number should have been the same. 10 Question Three (7 marks) Examine the following pairs of molecules. a.) What is the stereochemical relationship between the following pairs of molecules? Are they constitutional isomers, the same molecule (note: changing the conformation of a molecule does not make it a different molecule), enantiomers or diastereomers. b.) Clearly identify all meso compounds. H OH a.) b.) H H H H H3C CH3 H3CH 2C H3CH 2C H c.) OH CH3 CH3 CH3 H3C d.) HCl CH3 Br e.) Br Br ClH Br Br HCl CH3 H3C CH3 H Cl H H Br Answer a.) H3CH 2C H H OH b.) H H H H3C CH3 H3CH 2C Br Br Br Br These are mirror images of the same molecule, a meso compound. OH Enantiomers c.) H CH3 CH3 H3C ClH Cl H CH3 d.) CH3 HCl CH3 H3C H Cl Diastereomers. The molecule on the right is a meso compound. CH3 Enantiomers e.) Br H H Br These are conformational isomers of the same achiral molecule. This molecule has an internal mirror plane of symmetry, but that does not make it a meso compound. 11 Question Six (2 marks) Optically pure R-Glycidol has a specific rotation, [a] of +12° (neat, i.e. without solvent). What would be the measured rotation of a sample of R-glycidol that is contaminated by its enantiomer such that 25% of the sample is S-glycidol? Answer CH2OH R-Glycidol H O You could reason this out. When pure the rotation is 12°. When 75% pure, the rotation would drop to 75% of 12 which is 9°. But since the impurity is its enantiomer, the impurity will rotate the plane polarized light 25% of -12° or -3°. 9°-3°= 6°, the correct answer. Another way to reason this out: 50% of each is racemic (0°). 100% is +12. Half way between the two must be 6°. Question Ten (3 marks) The enzyme aconitase catalyzes the hydration of aconitic acid to two products, citric acid (which is achiral) and isocitric acid (which is chiral). O O C C OH HO Aconitic acid O C H OH The respective products result from the Markovnikov and anti-Markovnikov addition of water to the carbon-carbon double bond. Identify the structures of citric and isocitric acid. Answer O O C C OH HO Aconitic acid O C OH H2O O O C HO HO O C OH O O C C HO HO OH O C Citric Acid OH H H2O O C OH H H O C HO H O C * C OH * OH H OH Isocitric Acid There are two possible regioisomeric structures that result from the addition of water to the double bond in aconitic acid. They can be distinguished by the fact that the one on the left (citric acid) has no assymetric atoms and is therefore achiral. The other (isocitric acid) has two assymetric centers and is chiral. You cannot predict the absolute configuration of the two assymetric centers. 12 Question Three (seven marks) For each of the following: i) assign group priorities and configurational symbols (R or S, E or Z) to all stereocenters where possible and ii) indicate whether the molecule is chiral or achiral. Part (c) is a Fischer projection of C-13 labeled glycerol. a) Br Br H CH3 c) O b) Br d) OH CH3 C H H3CH 2C H T D C T = 3H H D = 2H H = 1H H3C Answer a) Br R S Br H b) Br Z CH3 c) O d) OH CH3 C H C H3CH 2C H Achiral Achiral (meso) T D R Chiral T = 3H H D = 2H H = 1H H3C Chiral Question Five (eight marks) Examine each of the following pairs of molecules and indicate whether they are constitutional isomers, enantiomers, diastereomers or identical. i) CH2OH CH2OH H OH HO H H OH HO H CH2OH Fischer ProjectionS iii) F F ii) HO CH3 H3C OH CH2OH F F iv) H3C H C Br F C C Answer i) enantiomers ii) enantiomers iii) diastereomers iv) constitutional isomers 13 H3C F H C Br Question Six (two marks) Optically pure S-Glycidol has a specific rotation, [a] of -12° (neat, i.e. without solvent). What would be the measured rotation of a sample of S-glycidol that is contaminated by 25% of R-Pinene ([a] = +50.7° (neat))? Explain your answer. H CH3 CH2OH O (S)-(- )- Glycidol (R)-(+)-Pinene Answer The net rotation is: (0.75 x -12°) + (0.25x50.7°) = 3.7° Question Nine (eight marks) i) Using the following molecules, explain how classical resolution (the separation of enantiomers) works. F3C CH CH3 OCH 3 C OH C NH2 O R-Mosher's Acid (Optically pure) Racemic ii) Why is the preparation of optically pure compounds important? Answer i) The racemic mixture of the amine consists of molecules that are R or S. When mixed with the optically pure R-Mosher's acid one obtains a 1:1 mixture of salts: F3C OCH3 R CH S CH 3 3 OH C C C C H2N H H2N H O Racemic C H3N CH3 R-Mosher's Acid (Optically pure) F3C OCH3 F3C O C C H O CH3 C H3N H OCH3 C C O O SS salt RR salt The RR and SR salts are diastereomeric and can therefore be separated (in principal) by crystallization etc. ii) Phthalidomide is an excellent example of the importance of separating enantiomeric compounds. Often, one enantiomer has a desireable biological activity and the other has an undesireable or unknown effect. 14 Question Three (four marks) For reactions that are stereoselective (i.e. they form an asymmetric center but not a racemic mixture), the degree of selectivity is usually reported in terms of enantiomeric excess. measured [ a ]o of mixture enantiomeric excess = x100% [a ]oD for pure enantiomer D [a ]oD = For the following reaction: O C H3C OH H CH2CH3 Chiral reducing agent HO + C H3C a l×c CH2CH3 H3C H C CH2CH3 For the enantiomerically pure R isomer, a °D = -13° Given that the measured specific rotation of the mixture is -6.5°: a) What is the enantiomeric excess? b) What is the % of the mixture that is R and what is the % of the mixture that is S? c) What would be the measured specific rotation of the reaction mixture if an achiral reducing agent had been used? Explain. Answer a) 50%. b) 75% is R and 25% is S. Recall that the S isomer rotates plane polarized light in the opposite direction (+3.25° in this case). The 75% R rotates plane polarized light -9.75°. The sum of the rotations is -6.5°. c) An achiral reducing agent would give a racemic mixture: equal proportions of the R and S products. It would not have any net rotation of plane polarized light. Question Two (3 marks) a) Label, where appropriate, all of the stereocenters/double bonds in the following molecules with the correct configurational symbol. Write down your priority assignments if you want part marks. b) How many possible stereoisomers are there for this molecule? H Cl 4H Cl 1 1 1 H C 3 H3C 2 2 H 3 H 2 The stereocenter is R. The double bond is Z. To get the number of possible stereoisomers you must find the number of double bonds capable of being E or Z and the total number of asymmetric atoms capable of being R or S. No. stereoisomers = 2n: four in this case. 15 Question Four (five marks) Examine the following pairs of molecules. a.) What is the stereochemical relationship between the following pairs of molecules? Are they constitutional isomers, the same molecule, enantiomers or diastereomers. b.) Clearly identify all meso compounds, if any. Answer a: In these two molecules, one asymmetric center is the same and one is different. These are diastereomers. b: These molecules lack asymmetric carbon atoms, but then, so do golf clubs. These two molecules are non-superimposable mirror images of one another so they must be enantiomers. a.) CHO CHO OH H OH H OH HO H H CH2OH CH2OH (Fischer Projections) b.) H H H C C C C C C Cl Cl H Cl Cl Question a.) Give the structures of all possible stereoisomeric products of the following reaction. b.) What is the stereochemical relationship between all of the products? c.) Are the products formed in equal proportions? H3C O O C C 1) NaBH4, CH3OH 2) H+, H2O CH3 Answer All products will have the same connectivity, but there there are different stereochemical outcomes. H OH HO H H3C HO H CH3 H3C H OH H OH H OH CH3 H3C CH3 A meso-diastereomer Enantiomers, formed in exactly equal amounts. Three different stereoisomers are formed: a racemic mixture of enantiomeric compounds and a meso diastereomer. The amounts of the two enantiomers will be equal to each other, but the meso-compound can, and will likely be formed in some differing amount. Question What is/are the product(s) produced upon the catalytic hydrogenation of Z-3,4-dimethyl-3-hexene? Compare them to the product(s) formed when E-3,4-dimethyl-3-hexene is reduced under the same conditions. H3C H3C CH3 CH3 16 Answer Hydrogenation is a syn-addition and H2 is equally likely to add to the top or bottom face of the double bond. The resulting products are enantiomers of each other and are formed in equal amounts - in other words the reaction gives a racemic mixture. H H H3C H3C H Top face CH3 H3C H3C CH3 CH3 Bottom face H3C H3C H H H CH3 CH3 CH3 H3C H3C CH3 CH3 H H If the E isomer is hydrogenated, a single product is produced - a meso compound. H3C H H H Top face CH3 H3C H3C CH3 CH3 Bottom face H3C H3C CH3 CH3 CH3 H3C CH3 H3C H3C CH3 H H H H H H H H3C H3C CH3 CH3 Internal mirror plane of symmetry. Question Ethylene and many other alkenes react with bromine in an ionic reaction to form vicinal dibromides shown in the following mechanism. The central intermediate is called a bromonium ion. Due to symmetry, attack on either end of this ion is equally likely though only attack on the right end is shown the example below. Br H H Br H H Bromonium ion Br+ H H Br H H H Br - H H H Br This mechanism also applies to substituted olefins. Keeping this in mind, show the importa stereochemical differences in the nature of the products obtained when one reacts bromine with Zbutene and (separately) with E-2-butene to get 2,3-dibromobutane. 17 Answer This is quite complicated due to the number of possibilities. Bromine can add to either side of the molecule to form a bromonium ion. The two possible bromonium ions are enantiomers of each other. Each bromonium ion can undergo attack by bromide to either carbon (the two possibilities are represented by solid and dashed arrows) with equal likelihood. So, there are four possible paths in this case. Interestingly, they all give exactly the same product, a meso-compound. Br Bromonium ion Br Br Br+ CH3 H H3C H CH3 H H3C CH3 H H H3C Br H Br- H Br H3C Br H CH3 H Br CH3 H3C - Br CH3 H H 3C H H Br H H 3C H CH3 + Br Br H 3C H Br H CH3 Br Br Cis-2-butene gives an identical bromonium ion no matter which side the bromine attacks. Subsequent attack by bromide can, again, take two possible paths. In this case, however, one obtains a racemic mixture of dibromides (diastereomeric to the dibromide formed from the trans-2-butene. Br Bromonium ion Br Br H CH3 + Br H H3C H CH3 H H H3C H H3C R,R Br CH3 BrHas an internal plane of symmetry. H H3C Br 18 Br S,S H CH3 Question A 1.00 M solution of 2-chloropentane in chloroform in a 10 cm cell gives an observed a of +3.64°. Calculate [a]D the specific rotation. The molar mass of chloropentane is 106 g/mol. Answer [a ]oD = a 1.0 mol / L x 106 g / mol c = = 0.106g / mL l×c 1000mL / L The specific rotation is 34.3°. Question A mixture of diastereomeric butenes, 60% E and 40% Z, is treated with cold, dilute, basic KMnO 4. Knowing what you do about the stereochemistry of the formation of 1,2-diols from alkenes, a.) What are the products produced and in what proportions? b.) What is the stereoisomeric relationship between all of the products? (6 marks) H3C H3C H H CH3 H CH3 H Z-2-Butene E-2-Butene Answer This reaction results in the syn-addition of two hydroxyl groups to the double bond of the alkene. Addition to either face of Z-2-butene gives a meso-diol. Since the meso-diol is derived from the Zisomer, it constitutes 40% of the final mixture. O O Mn O H C O Mn H H3C O O C CH3 H O O C H C H3C CH3 HO OH H H C C CH3 H3C meso-diol In contrast, addition to the top face of E-2-butene gives one enantiomeric product, while addition to the bottom face gives the opposite enantiomer. The two enantiomers will be formed in equal amounts and each will constitute 30% of the entire mixture of three stereoisomeric products. 19 O O Mn O O O H C Mn CH3 C H3C H H3C H C C H CH3 O O Mn O O O O H C H3C H3C C CH3 H H C C H O O Mn O O O 20 CH3 HO H C H3C R OH CH3 C R H H3C S S C H HO C H CH3 OH
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