Ecology Letters, (2005) 8: 1264–1270 doi: 10.1111/j.1461-0248.2005.00831.x LETTER Tracking carbon from the atmosphere to the rhizosphere Pål A. Olsson* and Nancy C. Johnson Department of Microbial Ecology, Ecology Building, Lund University, SE-223 62 Lund, Sweden *Correspondence: E-mail: [email protected] Present address: Environmental and Biological Sciences, Northern Arizona University, Abstract Turnover rates of arbuscular mycorrhizal (AM) fungi may influence storage of soil organic carbon (SOC). We examined the longevity of AM hyphae in monoxenic cultures; and we also used 13C incorporation into signature fatty acids to study C dynamics in a mycorrhizal symbiosis involving Glomus intraradices and Plantago lanceolata. 13C enrichment of signature fatty acids showed rapid transfer of plant assimilates to AM fungi and a gradual release of C from roots to rhizosphere bacteria, but at a much slower rate. Furthermore, most C assimilated by AM fungi remained 32 days after labelling. These findings indicate that 13C labelled fatty acids can be used to track C flux from the atmosphere to the rhizosphere and that retention of C in AM fungal mycelium may contribute significantly to SOC. Flagstaff, AZ 86011-5694, USA. Keywords Arbuscular mycorrhiza, bacteria, 13C, carbon cycling, Glomus intraradices, Plantago lanceolata, signature fatty acids, stable isotope. Ecology Letters (2005) 8: 1264–1270 INTRODUCTION The size and activity of microbial biomass in the soil regulates the accumulation of soil organic carbon (SOC). Arbuscular mycorrhizal (AM) fungi are obligate biotrophs that are well known for their importance in plant nutrition (Smith & Read 1997) and the formation of soil structure (Miller & Jastrow 2000). These fungi are also important regulators of C flux from plants to the soil (Zhu & Miller 2003) because they can consume up to 20% of plant C (Jakobsen & Rosendahl 1990) and they are often the largest contributor to soil microbial biomass (Miller et al. 1995; Olsson et al. 1999). Mycorrhizal fungi form a variety of structures with varying function, morphology and longevity. AM fungi colonize host plant roots from spores, extraradical hyphae or previously colonized roots. Hyphae grow from colonized roots into the soil and form an extraradical mycelium composed of recalcitrant runner hyphae, short-lived absorbing hyphae and persistent reproductive spores (Friese & Allen 1991; Bago et al. 1998). Intraradical structures form in the root cortex. These structures include hyphae, arbuscules, which are critical sites for nutrient transfer between the symbionts and vesicles, which are lipid-filled storage structures (Smith & Read 1997). Arbuscules are short-lived structures believed to have a turnover rate of 1–2 weeks 2005 Blackwell Publishing Ltd/CNRS (Alexander et al. 1989), while vesicles may persist even in senescent roots. AM fungi convert plant photosynthate into lipids, which are transported throughout the intra- and extraradical mycelium and stored in high concentrations in vesicles and spores (Smith & Read 1997; Bago et al. 2002). Recent studies suggest that assimilated C can move very rapidly from plants into AM fungi and back to the atmosphere (Johnson et al. 2002). Staddon et al. (2003) estimated that extraradical AM fungal hyphae turn over within 5–6 days. However, this study focused solely on C flux in the extraradical hyphae near the surfaces of plant roots; therefore, it is of limited value for estimating the residence time of AM fungal biomass within soils because it did not account for the dynamics of intraradical mycelium or of the network of extraradical mycelium that may extend many cm into the soil volume. The residence time of all AM fungal tissues must be considered before they can be accounted for in models of SOC dynamics. Zhu & Miller (2003) noted that it is unlikely that the estimated turnover rate of 5–6 days can be generalized to all AM fungal tissues because AM fungal hyphae are composed of chitin and they produce glomalin, two compounds that are known to have extremely long residence times in the soil (Rillig 2004). Integrative research is needed to reconcile these different views. Tracking ecosystem carbon 1265 Our study uses a new method to track C flow into AM fungi and rhizosphere bacteria that will help to monitor the fate of organic C in the soil. Neutral lipids are storage compounds that may comprise up to 20% of the biomass of hyphae, vesicles and spores of AM fungi (Olsson & Johansen 2000). The neutral lipid fatty acid (NLFA) 16 : 1x5 and, to a lesser extent, the phospholipid fatty acid (PLFA) 16 : 1x5 are effective signatures for AM fungi (Olsson 1999; Van Aarle & Olsson 2003). Other PLFAs are signatures for rhizosphere bacteria (Frostegård & Bååth 1996). Phospholipids are easily decomposed through enzymatic actions in soil (White et al. 1979) and thus PLFAs can be assumed to reflect the occurrence of living organisms. On the contrary, NLFAs are stored in spores, which have a long residence time. Thus, it is likely that C is maintained in the NLFA pool in the mycelium. Degradation of neutral lipids in soil has not been studied, but it is likely that they are more persistent than the phospholipids (White et al. 1979). A recent study indicates that total 13C incorporation in AM fungal hyphae is correlated to that in NLFA 16 : 1x5 (Olsson et al. 2005). Consequently, 13C labelled signature fatty acids can be used to effectively track C flux from plants to intra- and extraradical AM fungal tissues and to other rhizosphere microorganisms (Olsson et al. 2002; Gavito & Olsson 2003). The objective of this study was to measure the flux of newly assimilated C into AM fungi and rhizosphere bacteria. This investigation examined whether residence time of C in intraradical mycelium differs from that in extraradical mycelium. Also, we tested the hypothesis that the flow of newly assimilated C to AM fungi is greater and faster than to rhizosphere bacteria. METHODS Glasshouse study We grew 20 pots of Plantago lanceolata L. plants colonized with the AM fungus Glomus intraradices in a greenhouse. Rectangular pots (13.5 · 11 · 9.5 cm, l · w · h) divided into two compartments by means of a 25-lm mesh nylon screen were used as experimental units. The screen allowed the penetration of mycorrhizal hyphae but prevented the passage of roots. The rooting compartment (5.5 cm w), was used to grow host plants. Extraradical mycorrhizal hyphae were expected to develop from the root compartment through the mesh and into the side compartment (8 cm w). The pots were filled with a 1 : 1 mixture of gamma irradiated (10 kGy) sandy loam soil and quartz sand, with 450 g inside the nylon mesh and 600 g outside the mesh. In 17 pots, 50 g of root fragments and rhizosphere soil from cultures of G. intraradices Schenk & Smith (BEG 87) grown with Trifolium subterraneum was added to the 450 g of soil mixture inside the nylon mesh. Instead the three non-mycorrhizal controls received 50 g of gamma-irradiated soil. All pots were given 5 ml of a microbial wash (Van Aarle & Olsson 2003). Seeds of P. lanceolata L. were surface sterilized, germinated on moist filter paper, and five 5-day-old seedlings were transplanted inside the nylon mesh in each pot. Pots were watered by weight to 70% of the soil : sand water holding capacity. Every second week each pot received 10 mg of N as NH4NO3. The pots were randomly arranged and regularly redistributed in a greenhouse with an average 22 C day and 18 C night temperature, a minimum of 270 lmol m2 s)1 photosynthetic photon flux density supplemented with 400 W Osram light (Osram AB, Haninge, Sweden) bulbs as required and 18 h photoperiod. When P. lanceolata plants were 8 weeks old they were exposed to a 13CO2 enriched atmosphere (Olsson et al. 2002; Gavito & Olsson 2003) by sealing the pots in a clear, airtight box to which 125 ml of 13CO2 (99% 13CO2; Larodan Fine Chemicals, Malmö, Sweden) was injected using a gas tight syringe through a septum. The CO2 concentration inside the box increased from 190–290 p.p.m. to around 1100 p.p.m. after injection. Air inside the box was circulated using a fan. The labelling period lasted 120 min at which time the CO2 concentration inside the box decreased to its initial level. Plants and soil were harvested five times over the following 32 days after labelling with three replicates at each sampling time. The duration of the experiment was chosen because most C was expected to turnover within 1 week (Staddon et al. 2003). At harvest shoots, roots and soil were separated. Shoots were oven dried and weighed. A subsample of roots was stained with trypan blue (0.1% in lactic acid, glycerol and water 1 : 2 : 2, v/v/v) and per cent root length colonization was measured using the gridline intersect method (Giovannetti & Mosse 1980). Soil and root samples were frozen immediately following harvest and they were freeze-dried prior to lipid analysis. Lipid extraction and analysis Lipids within soil and roots (ground with a pestle in a microcentrifuge tube with a few grains of sand) were extracted by vortex mixing (1 min) in a one-phase mixture of citrate buffer, methanol and chloroform (0.8 : 2 : 1, v/v/v, pH 4.0). The lipids were fractionated into neutral lipids, glycolipids and phospholipids on pre-packed silica columns (100 mg sorbent mass; Varian Medical Systems, Palo Alto, CA, USA) by eluting with 1.5 mL chloroform, 6 mL acetone and 1.5 mL methanol respectively. The fatty acid residues in neutral lipids and phospholipids were transformed into free fatty acid methyl esters and analysed by gas chromatography using a 50 m HP5 capillary fused silica column (Hewlett Packard, Palo Alto, CA, USA) with H2 as 2005 Blackwell Publishing Ltd/CNRS 1266 P. A. Olsson and N. C. Johnson the carrier gas (Gavito & Olsson 2003). The fatty acid methyl esters were identified and quantified in relation to the added internal standard (fatty acid methyl ester, 19 : 0). These were compared with those identified earlier by gas chromatography–mass spectrometry. No hyphae were detected in the root-free soil compartment (outside the nylon mesh) and thus soil from outside the nylon was not considered in further analyses. membranes, with rather low specificity as a signature because of relatively low content in AM fungi and a high background in soil originating from bacteria (Olsson et al. 1995). Ten bacteria-specific PLFAs (i15 : 0, a15 : 0, i16 : 0, 10 Me16 : 0, i17 : 0, a17 : 0, cy17 : 0, 10 Me17 : 0, 10 Me18 : 0 and cy19 : 0) can be used as indicators of bacterial biomass (Frostegård & Bååth 1996). Calculation of excess Determination of and fatty acids 13 C 13 C enrichment in crude tissue samples Freeze-dried and ball-milled root and shoot material (c. 100 lg) was enclosed in tin capsules (crude tissue samples) and analysed by continuous-flow isotope ratio mass spectrometry (IRMS) using an ANCA-NT 20–20 Stable Isotope Analyser interfaced to a solid/liquid preparation module (PDZ Europa Scientific Instruments, Crewe, UK). The ratio 13C : 12C of CO2 of the combusted samples (total C) were determined with a 0.1& precision. Data were expressed as atomic % of 13C with reference to a sucrose standard (BDH Laboratory Supplies, Poole, UK), calibrated against the Pee Dee Belemnite (PDB) standard (the limestone fossil Belemnitella americana from the Cretaceous Pee Dee formation in South Carolina, USA; Dawson & Brooks 2001). The 13C enrichment in fatty acid methyl esters was determined in the 20–20 IRMS interfaced with a Hewlett Packard 6890 gas chromatograph. The chromatographic conditions were as described for the lipid analysis except that He was used as the carrier gas. The effluent from the capillary column passed through an Al tube with CuO wires at 860 C, where the fatty acids were converted to CO2 released into the 20–20 IRMS. The atomic % of 13C values were calculated based on atomic 13C of the reference CO2 gas, injected three times at the beginning and end of a chromatographic run. The reference CO2 was standardized with the PDB standard using solid/liquid preparation module. The precision of the reference gas 13C was 0.2&. Integration for each peak was checked and corrected manually. The 13C enrichment of fatty acids was calculated after correction for the C added in the methanolysis step of the fatty acid analysis procedure. Background 13C levels were determined from two non-labelled controls (1.153% in plant shoots, 1.152% in plant roots, 1.135% in NLFA 16 : 1x5 in soil). The 13C enrichment (excess atomic % of 13 C) was calculated by subtracting the natural abundance (%) of 13C from each fraction. Signature fatty acids Neutral lipid fatty acid 16 : 1x5 is a sensitive signature of AM fungi in both roots and soil (Graham et al. 1995; Olsson et al. 1995). PLFA 16 : 1x5 is a constituent of AM fungal 2005 Blackwell Publishing Ltd/CNRS In addition to measuring 13C enrichment in different fractions, we also determined the total excess 13C. This is the most appropriate measure to indicate C flow because it accounts for variation in mass of different fractions and this is important in systems where biomass varies over time. Plant excess 13C (lg) was calculated by multiplying the 13C enrichment with the total biomass C (assuming 50% C of dry weight). Excess 13C in AM fungi (including both intraradical and extraradical mycelium) was calculated by multiplying the 13C enrichment in NLFA 16 : 1x5 with total amount of AM fungal NLFA 16 : 1x5 (minus background levels of 16 : 1x5 fatty acids determined from three nonmycorrhizal pots harvested 8 days after labelling) and then by multiplying with the conversion factor 2.7, which has been obtained in studies of pure G. intraradices mycelium grown in liquid culture (Olsson et al. 2005). This conversion factor had been calculated by comparing the flow of C from the host plant to the NLFA 16 : 1x5 from measurements of NLFA 16 : 1x5 in the mycelia and its 13C enrichment [NLFA 16 : 1x5-C (lg) · 13C enrichment in NLFA 16 : 1x5 (%/100) ¼ C flow to NLFA 16 : 1x5] and then relating this to the flow of total C to pure mycelia of G. intraradices from monoxenic cultures [mycelium biomass C (lg) · total 13C enrichment (%/100) ¼ C flow to mycelium]. Bacterial excess 13C was calculated by multiplying 13C enrichment in the bacteria-specific PLFAs with the bacterial biomass C. The bacterial biomass C was calculated using a conversion factor of 350 lmol bacterial PLFAs per g biomass C (Bååth 1994; Frostegård & Bååth 1996), assuming similar enrichment in the total bacterial biomass as in PLFAs. Study of monoxenic AM cultures In a separate experiment, we visually studied the dynamics of AM fungi in monoxenic cultures of transformed carrot roots and G. intraradices in a split-dish system prepared as described by St-Arnaud et al. (1995). Hyphal growth rate on solid medium was microscopically studied in a root-free compartment adjacent to a compartment containing monoxenic AM roots. After the passage of the first hyphae over the barrier separating the two compartments, the dynamics Tracking ecosystem carbon 1267 of runner hyphae, branched absorbing hyphae and spores (Bago et al. 1998) were documented by day-to-day observations over a 15- to 20-day period. RESULTS The roots of all of the inoculated plants were colonized with AM fungi and there was no AM colonization in the nonmycorrhizal controls. Levels of AM colonization was not significantly different across the five harvests (Table 1). There was significantly more PLFA 16 : 1x5 in mycorrhizal roots (24 nmol g)1, n ¼ 17) than in non-mycorrhizal controls (2.9 nmol g)1, n ¼ 3). The content of NLFA 16 : 1x5 was 8600 nmol g)1 in the mycorrhizal roots, and only 13 nmol g)1 in the roots of non-mycorrhizal controls (Table 1). PLFA 16 : 1x5 in the soil of mycorrhizal and non-mycorrhizal pots were not significantly different, while NLFA 16 : 1x5 was 12 times greater in the soil of mycorrhizal pots (19 nmol g)1) compared with the nonmycorrhizal pots (1.5 nmol g)1). This indicates that in our experiment, AM fungi are the major source of intraradical PLFA and NLFA 16 : 1x5 and of extraradical NLFA 16 : 1x5. The enrichment of 13C in these compounds can therefore be assumed to reflect 13C enrichment in the AM fungal lipids. Mass balance calculations of NLFA 16 : 1x5 indicates that 82% of the AM fungal lipids where present inside the roots (intraradical) and 18% in extraradical tissues. The AM signature fatty acids were enriched with 13C within 2 days of labelling (Fig. 1a), 13C enrichment in NLFA 16 : 1x5 in roots (intraradical) and soil (extraradical) remained stable through the last harvest of 32 days after labelling and was not significantly influenced by time (oneway ANOVA). In contrast, 13C enrichment decreased with time in root PLFA 16 : 1x5 (P < 0.05, Fig. 1a) and increased with time in bacterial PLFAs (P < 0.01, Fig. 1b). Labelling of soil PLFA 16 : 1x5 probably represents both the bacterial and AM fungal biomass. This is indicated by the fact that there was no significant increase of this signature because of growth of the AM fungus (Table 1). Nevertheless, the labelling pattern over time resembled that of AM fungal signature (Fig. 1a) and not of the bacterial PLFAs (Fig. 1b). The 13C enrichment in 10 bacteria-specific fatty acids revealed that there was significant transfer of plant C to the soil bacteria. Enrichment in the bacterial pool of PLFAs increased asymptotically with little difference after 8 days. The labelling of signature bacterial PLFAs was much lower than in the AM fungal signature 16 : 1x5 fatty acids. The 13C enrichment in the shoots decreased from 0.56% to 0.19% during the harvesting period and from 0.46% to 0.27% in roots. We used conversion factors to calculate the amount of excess 13C retained in shoots, roots, AM fungi and bacteria; between 2 and 32 days after pulse labelling (Fig. 2). Linear regression indicated that 13C in shoots decreased from 7.9 to 3.1 mg; the amount of excess 13C in the bacterial fraction increased significantly; and there was no significant trend for plant roots or AM fungi. Overall excess 13C retained in plant biomass was of two orders magnitude higher than that in AM fungi, which in turn was one order of magnitude higher than that in bacteria. In the monoxenic cultures of G. intraradices, we observed that runner hyphae grew at a rate of 4.9 ± 0.38 mm day)1 (SE, n ¼ 9) and persisted for the entire observation period. No runner hyphae or spores degenerated during the observation period. In contrast, average longevity of the finely branched absorbing hyphae was only 5.3 ± 0.52 days (n ¼ 7), after which time spores were formed and finely branched hyphae degenerated. This observation agrees with a previous study showing that branched absorbing hyphae degenerate into empty septate structures after 7 days (Bago et al. 1998). DISCUSSION Our results corroborate the view that AM fungi contribute to both fast and slow pools of SOC (Zhu & Miller 2003). Table 1 Root colonization (%) by the AM fungus Glomus intraradices in experimental plants Roots Colonization NM 2 days 4 days 8 days 16 days 32 days 37 24 35 28 31 0 ± ± ± ± ± 4.2 5.0 3.7 2.5 8.4 Soil PLFA 16 : 1x5 NLFA 16 : 1x5 PLFA 16 : 1x5 NLFA 16 : 1x5 2.9 18 46 19 22 22 13 5900 13000 7500 8500 10000 0.69 0.79 0.92 0.75 0.74 0.67 1.5 14 16 13 21 21 ± ± ± ± ± ± 0.70 2.5 15 2.6 2.3 4.1 ± ± ± ± ± ± 5.4 480 3500 680 920 2500 ± ± ± ± ± ± 0.13 0.05 0.04 0.18 0.06 0.07 ± ± ± ± ± ± 0.17 1.7 4.4 4.5 5.7 4.8 Amounts (nmol g)1) of the AM fungal signature PLFA and NLFA 16 : 1x5 in roots (intraradical) and soil (extraradical) in the mycorrhizal treatments and the NM control. Values given are mean ± SE. PLFA, phospholipid fatty acid; NLFA, neutral lipid fatty acid; AM, arbuscular mycorrhizal; NM, non-mycorrhizal. 2005 Blackwell Publishing Ltd/CNRS 1268 P. A. Olsson and N. C. Johnson Figure 2 Excess 13C retained in shoots (open squares), roots (closed squares), arbuscular mycorrhizal (AM) fungus (circles) and bacteria (triangles) as calculated from the 13C enrichment in solid samples (plant material) or signature fatty acids (microbial fractions). Regression coefficients (r2) were: root 0.10 (n.s.), shoot 0.35 (P < 0.05), AM fungi 0.17 (n.s.) and bacteria 0.58 (P < 0.01). Figure 1 13 C enrichment in the arbuscular mycorrhizal fungal signature 16 : 1x5 was: (a) determined in roots (closed symbols) and soil (open symbols), and in the neutral lipid fatty acid (squares; NLFA) 16 : 1x5 and phospholipid fatty acid (circles; PLFA) 16 : 1x5 fractions. 13C enrichment in bacterial fatty acids (b) was determined as a mean of 10 bacteria-specific PLFAs (i15 : 0, a15 : 0, i16 : 0, 10 Me16 : 0, i17 : 0, a17 : 0, cy17 : 0, 10 Me17 : 0, 10 Me18 : 0 and cy19 : 0). 13C enrichment denotes the excess 13C when the natural background has been subtracted as determined in nonlabelled systems. Regression lines were fitted to log-transformed data and the data are presented on a log-scale. During microbial growth, almost 50% of C substrate is normally used for energy production and the rest is used for biomass components such as storage (e.g. Sylvia et al. 1998). Microbial C used for energy production is rapidly respired, often within 1–2 days after application of the substrate (Tsai et al. 1997). This is in accordance with the finding that AM fungi released 13CO2 within 9–14 h after labelling of field vegetation (Johnson et al. 2002); and indicates that recently assimilated C is mainly used for energy production. However, the C respired represents only part of the C that has been transferred from plants to AM fungi; a large fraction is incorporated into fungal structural and storage compounds. AM fungal neutral lipids are usually stored in intraradical vesicles or in spores and make up a large 2005 Blackwell Publishing Ltd/CNRS proportion of the AM fungal biomass (Olsson & Johansen 2000; Bago et al. 2002; Olsson et al. 2002). In G. intraradices, 50–70% of the neutral lipids are the fatty acid 16 : 1x5 (Graham et al. 1995; Olsson & Johansen 2000; Olsson et al. 2002). Dynamics of this compound in our experimental system indicates that the C assimilated by AM fungi resides for much longer than 5–6 days, probably in intraradical vesicles and in intra- and extraradical spores. The finely branched hyphae, commonly formed along the runner hyphae, develop rapidly on new hyphae and degenerate within a few days. Our measurements of C flux together with the fact that these fine hyphae are emptied of cytoplasm followed by cross-wall formation (Bago et al. 1998) suggest that C is retracted from degenerating hyphae. The only fraction where we observed a decrease in C retention during the experimental period was in the PLFA 16 : 1x5. This signature inside roots probably reflects arbuscule formation (Van Aarle & Olsson 2003) and may therefore result from membrane lipids that are degraded when arbuscules turnover. Arbuscules are known to live only 1–2 weeks (Alexander et al. 1989). Although fine absorptive hyphae turnover rapidly, much of the C contained within AM fungi is translocated into spores or persistent hyphal networks that may remain in the soil for long periods. The close correlation we found in 13C enrichment of the signature lipid NLFA 16 : 1x5 of extraradical and intraradical hyphae indicate that lipids are translocated rapidly between fungal structures within the soil and roots levelling out any imbalance because of new input or consumption. Indeed, Bago et al. (2002) observed high rates of lipid transport in hyphae of G. intraradices. Their Tracking ecosystem carbon 1269 estimate of 4 lm s)1 means that lipids are transported more than a cm h)1. We suggest that analysis of the dynamics of signature fatty acids is an integrative approach to accurately assess rates of C flux through intraradical and extraradical AM tissues that are dispersed through biologically meaningful volumes of soil. Staddon et al. (2003) concluded that there was a rapid turnover of AM fungal C, but only hyphae were collected in their study. This means that any disappearance of C from the hyphae in their study may be due to translocation of lipids into spores. We present data here for only one AM fungal species and it is clear that the physiology of AM fungal taxa may vary widely. For example, one family the Gigasporaceae, does not form intraradical storage vesicles, but instead forms extraradical auxiliary cells; thus, a higher amount of the C may be expected to be transported to the extraradical mycelium in members of this family. This was observed in a comparison of lipids in Scutellospora calospora, a Gigasporaceae, with G. intraradices, a Glomaceae (Van Aarle & Olsson 2003). This means that the soil C turnover may differ depending on whether Gigasporaceae or Glomaceae dominates the ecosystem. Also, the soil environment as a whole may influence the rate of AM fungal C turnover. In our system we inoculated the soil with a microbial wash, but populations of soil microorganisms were probably still reduced when compared with natural environments. This means that in field the turnover may be more rapid than in our system because of a more rapid flux of C to other trophic levels. In particular soil animals missing in most experimental systems may have a fundamental influence. For example, collembola may feed on the hyphae of G. intraradices (Klironomos & Ursic 1998). Isotopic labelling of signature fatty acids could also be used to study C turnover in field-based experiments; however, it is not possible to estimate total C turnover unless the extent of individual mycelia can be determined. Carbon turnover may therefore be difficult to separate from translocation in mycelia in natural systems. It is likely that AM turnover rates will differ among ecosystems depending on longevity of roots and hyphal networks (Langley & Hungate 2003). 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