Name: Date of Final Exam: Final Exam Review Sheet for Biology

 Name:________________________ Date of Final Exam:_________________ Final Exam Review Sheet for Biology 2016 ATP ­ ​
Adenosine Triphosphate​
​
stores the most energy​
in ​
3 Phosphate chemical bonds The ​
last chemical bond gets broken first ​
when energy is needed The only ​
fuel ​
a cell can use ​
directly for life’s activities. Very quick release of energy when needed and very quick storage (rechargable) ATP production stops with death Cellular Respiration­ Process that breaks down Glucose into ATP​
​
takes place in the ​
mitochondria and is an ​
aerobic process During Cellular Respiration​
, 36 ATP ​
​
is produced inside ​
the mitochondria​
​
using oxygen Aerobic​
­ requires ​
oxygen Anaerobic​
­ ​
does ​
not need oxygen​
examples: ​
Glycolysis, Alcoholic Fermentation and Lactic Acid Fermentation ​
are anaerobic reactions that ​
do not need oxygen ​
to proceed. Glucose­ (C​
H​
O​
)​
the most important ​
sugar​
needed by all living cells 6​
12​
6​
Poly​
saccharides​
­ poly​
mers​
long chains of energy found in starches like ​
potatoes, bagels, and pasta; (many sugars) ; saccharide= sugar ​
Glycogen­ “human starch”​
made in the ​
human liver and stored in muscles​
for energy Diabetes­​
disease that affects the ​
Glucose ​
level in the blood. People who are diabetic cannot produce enough insulin (hormone) so they must inject the insulin as medicine. ​
“Carb loading”­​
Athletes eat ​
starch food (polymers­ polysaccharides)​
24 hours before a big athletic event for a lot of energy. Remember starch has a lot of chemical bonds 100,000,000 Cellulose​
­ carbohydrate that is found in all plant cell walls. ​
Cellulose ​
gives cells ​
strength and shape. Stems ​
of large trees are cut down to ​
make wood and paper. Fiber­ ​
term that humans use ​
for cellulose. ​
Examples include celery, fruits, vegetables, lettuce leaves. Humans­ ​
cannot chemical break down cellulose (fiber) because humans ​
do not produce an enzyme to break it down into ATP.​
Enzyme is ​
Cellulase​
. Moose, Deer, Rabbits do have enzyme and derive nutrients from Cellulose. Enzymes Enzymes­Special protein catalyst​
that ​
speed up chemical reactions​
in our cells but do not get used up instead ​
recycled All chemical reactions that occur in living organisms need ENZYMES!!!! Enzymes ​
are named based on ​
the substrate (reactant)​
they act on and end in the suffix ​
–ase Sucrase­ is the enzyme​
that breaks ​
down sucrose­ table sugar DNA Polymerase ­ ​
is the enzyme that makes DNA ATP Synthase ​
­ is the enzyme that breaks and rebuilds ATP molecules Lock and Key Model­ ​
Enzymes ​
are very specific acting​
enzymes are like a key that will only unlock 1 door Ex. classroom door lock and correct key . (Like 2 puzzle pieces that fit perfectly together.) Study the diagram below​
. You must know all parts of ​
Enzyme Substrate Complex and in correct order to label on the final. Steps: 1. ​
Substrate =Reactant​
and Enzyme attach to each Other ​
at Active Site 2. Old Chemical Bonds get broken and changed into​
new chemical bonds at Active Site hence the word ACTIVE​
3​
. New Products​
are released 4. Enzyme gets recycled​
to perform the chemical process over and over again Enzymes ​
­are represented as the ​
“smaller hill”​
on the graphs. Analogy: Remember ​
you can run faster over a smaller hill than a larger hill!​
This is why ​
adding an enzyme makes chemical reactions go very fast! (CHNOPS)­ represent elements Carbon, Oxygen, Nitrogen, Hydrogen and Phosphorous, Sulfur These ​
6 elements​
make up the ​
four Organic compounds​
that are needed for Life: 1. Nucleic Acids ­ DNA and RNA ​
are two types of these organic molecule​
=Heredity 2. Proteins=Enzymes and Amino Acids=build cells, tissues, organs, organ systems 3. Carbohydrates=Sugar and Starch= ENERGY and cell walls for plants/insects 4. Lipids (fats, oils and waxes)= Long Term Energy Storage Chromosomes S​
ex chromosomes​
­ the two chromosomes (​
XX and XY)​
that determine the sex of an organism only 2 in humans ​
XX=​
female ​
XY​
= male Autosomes​
­ chromosomes that contain genes that code for body traits 44 or 22 pairs Trisomy 21​
= has 3 chromosomes instead of two at “chromosome pair 21” aka Down’s Syndrome DNA Nucleic Acids​
–found in the ​
nucleus ​
and are made of nucleotides Nucleotides­ are building blocks of nucleic acids DNA and RNA. DNA is the abbreviation for ​
deoxyribonucleic acid. ​
The sugar is called​
​
deoxyribose DNA is shaped like a ​
double helix/twisted ladder You have to label this picture on the final. ●
●
●
Phosphate Deoxyribose (sugar) Nitrogen Base DNA ​
alphabet has 4 letters​
:​
​
A=T ​
and ​
G=C In a DNA molecule, ​
Adenine​
​
(A)​
bonds to Thymine (T) In a DNA molecule, ​
Cytosine​
​
(C) ​
bonds to Guanine​
​
(G​
) Weak hydrogen bonds​
hold DNA’s complementary bases together. Complementary Base Pair ATCGGGTATA TAGCCCATAT Triplet= 3 bases of 3 nucleotides on DNA and every​
3 bases code for an amino acid DNA Replication ­ ​
The process in which DNA makes a copy of itself It happens when DNA is unwound and opened up by the ​
weak hydrogen bonds ​
breaking between ​
A=T and C=G Controlled by an enzymes ​
DNA Polymerase Chargaff’s Rule­ ​
The amount of ​
Adenine is equal to Thymine ​
and the amount of ​
Cytosine is equal to Guanine​
​
Example: DNA sample Adenine Thymine Cytosine Guanine 100% 35% 35% 15% 15% 100% 12% 12% 38% 38% James Watson and Francis Crick “​
allegedly” ​
discovered the structure of DNA and built the first correct model. ●
There was controversy because James Watson viewed ​
Rosalind Franklin’s picture made using x­ray technology. Rosalind Franklin did not give Watson her permission to view the DNA x­ray picture. ●
This x­ray proved that DNA was a double helix and that is the evidence Watson and Crick used to st​
build the 1​
model. ●
James Watson, Francis Crick and Maurice Wilkins­ won a Nobel Prize for their correct structure of of DNA but Rosalind Franklin died of cancer ​
and could not receive the Nobel Prize posthumously (in death) Alfred Hershey and Martha Chase used radioactive isotopes ​
to determine if protein or DNA making up a ​
bacteriophage (virus)​
was the genetic material. DNA ­​
proved to be the infecting material of the bacteriophage This is a picture of a virus that infects bacteria. Another name for it is bacteriophage Viruses are not cells. Viruses cannot reproduce on their own must infect a host Recombinant Technology​
­ one form of Genetic Engineering that creates “​
Small human chemical Factories​
“ for ​
Insulin and Human Growth Hormone production ●
Uses 2 different species –a ​
Human​
​
gene/DNA and inserts into Plasmid​
​
of Bacteria ●
This technology has created Transgenic organism­ 2 different species’ types of DNA ●
Safer and Less Expensive – helps millions of more people ●
rd​
Used to make Rice more nutritious in 3​
World Countries(very poor) ●
This technology has created Transgenic organism­ 2 different specie’s types of DNA Mutation​
­ a change or mistake in DNA base pairing. Can be ​
bad, good or even neutral​
depending on where the mistake is the DNA molecule and also if the mutation gives an advantage in a certain environment Sickle Cell Anemia­ ​
inherited disease that can be found mostly in African Ancestors (Black) individuals and others in which ​
the red bloods are irregularly shaped like a “sickle­ farm instrument” or crescent moon In USA and Europe individuals with Sickle Cell Anemia Trait have a disadvantage­difficult to breath normally and cannot participate in strenuous physical activities. In Africa and countries where Malaria is still prevalent ​
Sickle Cell Anemia trait gives the person immunity or resistance to Malaria Energy Terms: Autotroph­​
another name for ​
a primary producer aka producer Autotrophic bacteria​
living in the dark, cold ​
ocean floors​
​
where hydrothermal vents​
are located use this process to survive and ​
support an entire food web that scientist did not know existed until 1970’s. The bacteria are the bottom of the food chain (the base) and the most important! Photosynthesis­​
​
a process in which producers use ​
light energy​
to make Glucose/carbohydrate Photosynthesis​
is used by plants, algae, and plankton to make glucose from sunlight Note: ​
Most of planet Earth’s oxygen is made by phytoplankton​
– that are photosynthesizing and floating in the Ocean. Heterotroph​
­another name for a ​
consumer. ​
These organisms do not have the ability to undergo photosynthesis or chemosynthesis. ​
Heterotrophs eat others. Heterotrophs include: 1. Primary consumers­ ​
1st​
​
level consumer eats producers. Herbivory­ refers to Herbivores­ ​
are organisms that eat only plants. Herbivores are the predator and plant is the prey 2. Secondary consumers­ ​
2nd​
​ level consumers eat primary consumers. Can be a carnivore or an omnivore. Carnivore­​
eats only meat (carne) Omnivore ​
–eats both meat and plants 3. Tertiary consumers­​
3rd​
​
level consumer eats the secondary consumer 4. Quaternary Consumers­ ​
4th​
​
level consumer eats the tertiary consumer 5. Decomposers­ ​
eat dead and decomposing organisms. ​
Bacteria and Fungi​
are Decomposers All food webs ​
need decomposers and detrivores​
to return ​
elements (CHNOPS​
) back ​
to the soil or water to be used again by producers. Detrivores­ ​
eat decomposed leaves and organic matter which is detritus aka humus. ​
Worms and Crabs are detrivores 10 % Rule­ ​
only 10 % of Energy is moved to the next feeding level. 90 % is given off as heat Trophic level­ feeding level. There are usually no more ​
than 5 trophic levels s​
ince there will be so litte energy available to the top level Consumers! The sun is ​
the source of energy​
for this food pyramid Biomagnification­ ​
harmful pollutants such as DDT , Mercury, Lead​
and PCBs build up in top level consumer’s body tissue and cause health problems, cancer and even death. It almost caused our ​
country’s Bald Eagles​
to become extinct in 1970s; weakened their egg shells so the shells broke and no babies could be incubated and develop! Ecology terms Succession​
­ a change in an ecosystem over time. Primary succession​
­ occurs on bare rocks and volcanic islands where no soil exist​
. Soil​
takes a long to form due to erosion Pioneer species​
­ the first colonizers to a barren area​
; lichen and mosses​
are pioneer species because they do not need soil to live and reproduce. Secondary succession​
­ occurs after a forest fire or cutting because soil still exist. Climax Community­​
older ecosystem with well­established older trees and a lot of biodiversity. Biomes Biome​
­ very large geographical area that has the same climate and precipitation Temperate Deciduous Forest Biome­ ​
area that has seasons and average temperature and precipitation. NJ and the entire East Coast of USA​
is a Temperate Deciduous Forest Biome. Deciduous ​
– refers to dropping of leaves in autumn Ex maple, oak hickory, black walnut trees Tundra Biome­ ​
has ​
permafrost or frozen soil​
most of the year. Very cold temperature and no grasses just moss and small shrubs. Polar Bears and Caribou. Tropical Rain Forest Biome­ High temperature​
and ​
high amounts of precipitations​
(rain) because it is at the equator­Tropical Region of Earth ​
Most biodiversity​
of ​
plants and animals C4 photosynthesis plants: Sugar cane and Corn grow use the high sunlight intensity Desert Biome­ High Temperature and Low Precipitation plants​
and animals have adaptations that allow them to live in these harsh conditions.​
Cactuses ​
store water and have CAM photosynthesis. Stoma opened ​
only at night​
to avoid a lot of water loss due to​
transpiration – ​
evaporation of water from plants. Ecosystems and Populations Estuary­​
a wetland that forms when a river meets the sea. Estuaries are called the ​
World’s Nursery because so many aquatic organisms give birth in these warm and shallow areas. Aphotic zone­ ​
the dark region in a body of water where ​
no photosynthesis occurs​
and it is cold and high pressure.Strange animals live here in the aphotic zone. Certain jellyfish and hatchet fish have​
​
the ability to make their own natural light​
so they can ​
“Glow in the Dark”.​
This ability is called bioluminescence. Brackish water​
­ salt water mixed with fresh water. Less salty than ocean Ecosystem​
­ all the living (biotic) organisms in one area and their non­living (abiotic) physical environment Abiotic​
­ nonliving factors include rocks, soil, salt, water Biotic​
­living factors include trees, plants, fungi, cats Community­​
includes many different populations of organisms living in one place. All the deer, rabbits, dogs and humans in Hawthorne, NJ Population­​
includes all the members of the same species in an area. Humans in Hawthorne, NJ. There are several hundred squirrels living in an oak forest. S Population Growth Curve​
­ Shows how populations grow up to a specific point known as the ​
carrying capacity​
. Organisms cannot continually grow because they run out of food or space and must level off Organism​
­ individual of a Genus and specie Ex. ​
Homo sapien​
Organisms of the same species can interbreed to make a fertile offspring Symbiosis​
­very close feeding relationship between 2 different species. 3 Types of symbiosis: ●
●
●
Mutualism​
­ Both species benefit; ​
+ and +​
Ex. Clownfish and Anemone; Blind Person and Seeing Eye Dog and LICHEN­ which is an algae and a fungus Parasitism​
­ one organism benefits and the other is harmed. ​
+ and –​
Ex. Fleas on Dog Commensalism​
­ one organism benefits and the other is not helped or harmed ​
+ and 0​
Ex. Barnacles on a Whale Evolution Taxonomy­​
The science of naming and grouping organisms according to ​
Binomial nomenclature ­2 part scientific name (​
Genus and species) ●
●
Genus and species​
and written in Latin Ex. ​
Homo sapien ​
(human) or ​
Ursa arctos (​
bear) Binomial nomenclature­ 2­part scientific naming system made by Carolus Linnaeus Phylogeny​
­The study of how living and extinct organisms are related to one another ●
●
●
clade​
­A group of species that includes a single common ​
ancestor and all descendants of that ancestor phylogenetic​
tree aka cladogram­shows relative degrees of relatedness among lineages. Derived trait​
­ is a trait or characteristic that arose in the most recent common ancestor of a particular lineage, and was passed along to its descendants Interpretation of the above Cladogram: Amphibians­​
are the oldest species or clade since they are located at “the bottom of the branch” Interpretation of the Cladogram (continued): Then the sequence of evolution is Amphibians→ Reptiles → Marsupials→​
Dogs and relatives​
→Cats Cats​
­ evolved last and are the most recent in evolutionary time. They are located at the Very top of the branch Node​
­ the fork area where a new species evolved from a common ancestor represented a the main branch Represents a derived trait “every species to the right of the has that trait Amniotic Eggs​
­is a derived trait can be found in Reptiles, Marsupials, Dogs, and Cat Hair​
­ is a derived trait found in Marsupials, Dogs, and Cat Retractable claws​
­ as a derived trait and found only in cats Proximity​
­ the closer the location of the 2 different organisms the more common DNA they share and the more recently they evolved from a common ancestor ●
●
Amphibians and cats share the least amount of similar DNA/Genes Dogs and relatives share the most similar DNA/Genes Evolution​
­ a change in the DNA in a population of a species over many generations. Evolution​
– results from ●
●
random variation in characteristic’s due to sexual reproduction mutations of DNA producing new traits Common Descent​
­ the idea that all organisms evolved from a common ancestor a long time ago and today there is much ​
Biodiversity­ many different species Charles Darwin​
­ Gave the most correct ​
Evolutionary Theory. Darwin’s Theory includes these 4 main ideas: 1. Variation​
– differences in traits are natural in all populations and will serve as the basis for evolution 2. Common Descent​
­Organisms descended from a common ancestor a long time ago and underwent “Descent with Modification” traits were modified based on environment. 3. Gradualism​
­Evolution takes a long, long time known a ​
Gradualism ​
and the planet is very old (4.5 billion years) 4. “Survival of the Fittest”­​
Most organisms will produce more young that will not survive. Only the most fit will survive an reproduce and pass on the healthy and strong traits to new generations Adaptive radiation​
aka divergent evolution­ new species evolve from a common ancestor due to living in different environments/ habitats. ●
14 different species of ​
finches (birds) on the Galapagos Islands​
descended from a common finch from South America ●
Tortoises (turtles)​
descended from a common ancestor from South America ●
Evolution is still going on all around us today ex. Antibiotic Resistance ●
Geographic isolation­ ​
a barrier such as a mountain or ocean prevents 2 members of the same specie to reproduce thus causing speciation to occur.​
Ex. Finches and Turtles of the Galapagos Islands off the coast of South America East Coast and even the 2 different squirrels of the Grand Canyon Evidence that support Evolutionary Theory: 1. DNA Testing­ the most accurate 2. Embryology­ ​
all embryos have the same genes when first formed; tails, gills, webbed toes and fingers 3. Fossils­ found in ​
sedimentary rock a​
nd the use of radiometric dating – ​
proves the real age of Earth and in age extinct organisms Ex Dinosaurs and Mass Extinction 4. Anatomy­​
study of bones Homologous Organs​
­ Humans, horses, whales, birds have the ​
same exact bones​
even though they are not used for the same function Vestigial Organ​
­ ​
has no present day function or use​
ex. Human appendix and tail bone Cell Structure & Function Chloroplast​
­ ​
organelle ​
where photosynthesis takes place Granum aka Grana – (looks like a stack of green m& m)­​
made of ​
thylakoids( one m& m) The ​
location of the Light Dependent Reaction o​
f photosynthesis occurs in the​
​
thylakoid membranes of the grana Stroma­​
​
fluid –​
is where the ​
Calvin Cycle or Dark Reaction​
of ​
Photosynthesis t​
akes place Be prepared to label the Stroma, Granum (Grana), and the Thyklakoid on the final! Be prepared to label this diagram on the final! Blue, Violet and Red Light­​
are the wavelengths of Light that are ​
used during photosynthesis. Green Light­​
are ​
not used in photosynthesis ​
and is reflected by plants Stoma­ also called stomata​
opening on the bottom of leaves that allow ​
carbon dioxide and water vapor to diffuse in​
and ​
oxygen to diffuse out. Guard Cells­ special cells that open and close ​
the stoma. Work because of ​
Osmosis –​
water diffusion ( see picture above) Cuticle­ waxy covering ​
on leaf that protects from water loss. Photosynthesis­ takes place in the palisades and mesophyll cells​
not in cuticle or epidermis! See above the small dots are chloroplasts. Transpiration­​
Water Loss in Plants (“plant perspiration”) due to evaporation to air Veins of leaves ­ ​
are made of xylem and phloem­ ​
vascular tissues Phloem­​
moves ​
glucose​
­ the ​
food ​
made in the leaves throughout the entire plant even down to the roots. This is done because of ​
Active Transport and Osmosis! Xylem­​
​
moves water and ions from the soil​
into the roots and up the stem to the leaves and then out of the leaves because of transpiration. Root hairs­ ​
special adaptations that that allows for ​
more osmosis (water) to move in through the roots of plants Flower­ reproductive organ of the plant​
. Contains the stigma that makes egg and anther makes the sperm aka pollen Fruit­​
developing embryo (baby plant) of a plant and comes from the flower Legumes­​
Special plants ( peas, beans, peanuts, soybeans) that can take ​
Nitrogen Gas​
from the air and chemically change it into usable Nitrate and Nitrite compounds needed by all plants. Nitrogen Fixation­ process in which ​
Nitrogen Gas​
from the air gets chemically change it into usable Nitrate and Nitrite compounds needed by all plants. Performed by Bacteria in the soil, legumes and natural /artificial fertilizers Nitrogen Gas​
is the ​
most abundant element in the atmosphere​
/air around us ​
NOT oxygen! Fluid Mosaic Theory​
­ the cell membrane is a thick fluid (jello) always changing in shape due to the phospholipid composition and cholesterol and proteins embedded in it! Phospholipids​
– special lipids that give the cell membranes ​
fluidity​
due to chemical makeup: ● phosphate heads­​
polar​
= hydrophilic= water loving ● lipid tails= ​
nonpolar​
= hydrophobic water hating Semipermeable­ ​
aka ​
selectively permeable​
= allowing only certain molecules to pass through the cell membrane Cell transport=​
movement of ​
materials through the cell membrane​
2 types: ​
passive and active Concentration gradient= ​
difference in ​
concentration either high or low or low to high Passive transport=​
no ATP/Energy needed, moves from high to low (downhill) include: 1. Diffusion­​
any substance that moves from a high concentration to a low concentration ex. Oxygen, CO2​
, “perfume = analogy” 2. Facilitated diffusion­​
protein channels that help to move substances through the cell membrane ex. Glucose 3. Osmosis​
­ water diffusion from high to low concentration and can occur in 3 different environments with different effects on the cell. a. Hypertonic​
­ ​
more solute outside the cell​
and more water inside so water will move out of cell­shrink ex. Swimming in Salt water on skin cells or drinking soda to quench thirst only dehydrates more!!!! b. Isotonic​
­ ​
equal amounts of solutes inside and outside the cell​
so water moves in and out at an equal rate called Osmotic Equilibrium= ideal situation for cells no change in the shape/size of the cell= balanced state c. Hypotonic ­less solute outside the cell​
and less water inside so water will move into the cell­and the cell will get bigger and can ​
pop or lyse​
Ex red blood cells in fresh water= burst see red smear , salt water fish in fresh water tank will die due to all cells popping! Active transport=​
ATP/Energy needed to move bulk /large amounts, moves from ​
low to high​
(uphill) includes: 1. Endocytosis­​
substances moving into the cell by fluid cell membrane surrounding the substance and engulfing : 2 methods= a. Pinocytosis=​
cellular drinking ​
using ATP a. Phagocytosis​
= cellular eating 2. Exocytosis­​
substances moving out of the cell needed to for cell products­proteins, hormones, steroids, and waste 3. Protein pumps= ​
transporters of charged​
ions ex Na, M, K