Resistance to quinclorac and ALS-inhibitor herbicides in Galium spurium is conferred by two distinct genes L L VAN EERD, M D M C LEAN, G R STEPHENSON & J C HALL Department of Environmental Biology, University of Guelph, Guelph, Ontario, Canada Received 10 July 2003 Revised version accepted 14 May 2004 Summary Classical Mendelian experiments were conducted to determine the genetics and inheritance of quinclorac and acetolactate synthase (ALS)-inhibitor resistance in a biotype of Galium spurium. Plants were screened with the formulated product of either quinclorac or the ALS-inhibitor, thifensulfuron, at the field dose of 125 or 6 g active ingredient (a.i.) ha)1 respectively. Segregation in the F2 generation indicated that quinclorac resistance was a single, recessive nuclear trait, based on a 1 : 3 segregation ratio [resistant : susceptible (R : S)]. Resistance to ALS inhibitors was due to a single, dominant nuclear trait, segregating in the F2 generation in a 3 : 1 ratio (R : S). The genetic models were confirmed by herbicide screens of F1 and backcrosses between the F1 and the S parent. F2 plants that Introduction Following lack of control from treatment with triasulfuron, an acetolactate synthase (ALS)-inhibitor herbicide, Galium spurium L. (false cleavers) seeds were collected from a field in central Alberta, Canada (Hall et al., 1998). Greenhouse experiments confirmed that this G. spurium biotype was resistant to several ALSinhibitor herbicides and coincidently to the auxinic herbicide quinclorac (Hall et al., 1998). The field from which resistant (R) seed was harvested had been sprayed 3 of 6 years with ALS inhibitors, but quinclorac had never been used (Hall et al., 1998). By comparing the R and susceptible (S) biotypes, the resistance was determined to be >6.7- and >14-fold for quinclorac and ALS inhibitors respectively (Hall et al., 1998). The mechanism of ALS-inhibitor resistance in the R biotype was due to altered herbicide inhibition of the ALS survived quinclorac treatment set seed and the resulting F3 progeny were screened with either herbicide. Quinclorac-treated F3 plants segregated in a 1 : 0 ratio (R : S), hence F2 progenitors were homozygous for quinclorac resistance. In contrast, F3 progeny segregated into three ratios: 1 : 0, 3 : 1 and 0 : 1 (R : S) in response to ALS-inhibitor treatment. This segregation pattern indicates that their F2 parents were either homozygous or heterozygous for ALS-inhibitor resistance. Therefore, there were clearly two distinct resistance mechanisms encoded by two genes that were not tightly linked as demonstrated by segregation patterns of the F3. Keywords: weed, genetics, inheritance, auxinic, thifensulfuron, multiple-herbicide, recessive trait, quinclorac, Galium spurium, resistant. enzyme (EC 4.1.3.18) (Hall et al., 1998), which resulted from a point mutation in the ALS gene that conferred an amino acid alteration in the ALS enzyme (Horsman & Devine, 2000). However, the mechanism of quinclorac resistance in G. spurium is not known. Quinclorac, a quinolinecarboxylic acid, is classified as an auxinic herbicide with monocot activity. At low concentrations, auxinic herbicides produce effects similar to the natural plant hormone auxin [indole-3-acetic acid (IAA)]. At high concentrations, auxinic herbicides are phytotoxic and produce a number of phenotypic characteristics such as cell and internode elongation, as well as leaf and stem epinasty/hyponasty, ultimately leading to plant necrosis and death. These symptoms are characteristic in susceptible dicots, such as G. spurium, treated with a quinolinecarboxylic acid. Although auxinic herbicides have been used for c. 60 years, their mechanism of action is not fully understood. In some, Correspondence: J C Hall, Department of Environmental Biology, University of Guelph, Guelph, Ontario, Canada, N1G 2W1. Tel: (+011)-519-8244120 ext. 52740; Fax: (+011)-519-837-0442; E-mail: [email protected] Present address: L L Van Eerd, Ridgetown College, University of Guelph, Ridgetown, Ontario, Canada N0P 2C0 European Weed Research Society Weed Research 2004 44, 355–365 356 L L Van Eerd et al. but not all (Valenzuela-Valenzuela et al., 2002), susceptible dicot species, auxinic herbicides induce 1-aminocyclopropane-1-carboxylic acid synthase activity, resulting in increased biosynthesis of ethylene, abscisic acid and ultimately hydrogen peroxide, which leads to cell necrosis (Hansen & Grossmann, 2000; Grossmann et al., 2001). The actual target site of quinclorac and other auxinic herbicides is not known. Sulfonylurea herbicides, such as thifensulfuron, inhibit ALS, also known as acetohydroxyacid synthase (AHAS), the first dedicated enzyme in the branchedchain amino acid biosynthetic pathway. The inhibition of ALS by sulfonylurea herbicides results in plant death, either by depletion of branched-chain amino acids or by accumulation of toxic intermediates such as a-ketobutyrate and a-amino-butyrate. Soon after its registration in the 1990s, resistance to quinclorac was observed in monocot species, Digitaria ischaemum L. (Schreb) Muhl. (Koo et al., 1994; Abdallah et al., 2004) and Echinochloa spp. (Lopez-Martinez et al., 1997; Menezes et al., 2000). Despite the widespread use of the auxinic herbicides for almost six decades, the incidences of auxinic herbicide resistance have been rather minor: only 24 resistant weed species reported worldwide (Heap, 2004). The mechanism of resistance in most of the auxinic herbicide-resistant species is not known. Absorption, translocation, root exudation or metabolism were not responsible for auxinic herbicide resistance in several weed biotypes including Centaurea solstitialis L. (Valenzuela-Valenzuela et al., 2001), Kochia scoparia L. (Cranston et al., 2001) and Sinapis arvensis L. (Penuik et al., 1993). In the aforementioned auxinic herbicide-resistant biotypes, the mechanism of resistances is hypothesized to be due to altered auxin binding to the target site or altered signal transduction along the auxin pathway (Penuik et al., 1993; Valenzuela-Valenzuela et al., 2001, 2002; Goss & Dyer, 2003). The inheritances of only two auxinic herbicide-resistant biotypes have been investigated. Resistance to the auxinic herbicide picloram in C. solstitialis is based on a recessive allele at a single, nuclear locus (Sabba et al., 2003). In contrast, resistance to the auxinic herbicide dicamba in an S. arvensis biotype was due to a completely dominant trait at a single, nuclear gene (Jasieniuk et al., 1995). The inheritance of quinclorac resistance has not been previously characterized. In contrast, weed resistance to ALS-inhibitor herbicides developed shortly after their introduction in 1982. Of the 286 herbicide-resistant weed biotypes, 83 have ALS-inhibitor resistance (Heap, 2004). In most ALSinhibitor-resistant species, resistance is a result of an altered ALS enzyme because of a point mutation in the ALS gene (Tranel & Wright, 2002; Heap, 2004), similar to that characterized in this R G. spurium biotype (Hall et al., 1998; Horsman & Devine, 2000). Understanding the inheritance of herbicide resistance provides insight into the likely speed at which resistance may spread. Furthermore, if quinclorac and ALSinhibitor resistance genes are linked, molecular analyses may provide insight into the mechanism of quinclorac resistance and perhaps the mode of action of quinclorac and auxinic herbicides in dicots. Consequently, conventional breeding and genetic techniques were conducted to characterize the inheritance of both quinclorac and ALS-inhibitor resistance in this G. spurium biotype. Thifensulfuron was used as the representative ALSinhibitor herbicide because only one ALS-inhibitor herbicide is necessary to demonstrate inheritance of target site-based ALS-inhibitor resistance (MallorySmith et al., 1990; Tranel & Wright, 2002). Classical Mendelian inheritance was studied to determine (i) the number of genes controlling resistance to both herbicides, (ii) gene linkage, (iii) whether resistance alleles were dominant or recessive, and (iv) whether the herbicide resistance locus/loci were nuclear or organellar. Materials and methods Growth of plants Seeds were sown in Premier Promix, a peat-mossbased potting medium (Premier Horticulture, Red Hill, PA, USA). After emergence, plants were thinned to one plant per 450-mL pot. The plants were irrigated with water as required and fertilized three to four times a week with 20 : 20 : 20 (N : P : K) fertilizer (20 g L)1) containing micronutrients. Plants were grown in a controlled environment growth room maintained at 24/18 ± 1C day/night temperature with a 16-h photoperiod and an average relative humidity of 65%. The irradiance level was constant at c. 400 lEinstein m)2 s)1. Development of parental lines In 1996, R G. spurium seeds from plants which survived triasulfuron treatment were collected from a field in central Alberta, Canada and known S seed were collected from a field outside of Edmonton, Alberta, Canada. Based on flower and seed morphology, both R and S biotypes were identified by Dorothy Fabian of the Vascular Plant Herbarium, University of Alberta, Edmonton, Canada as G. spurium L. and not G. aparine L. (common cleavers) (LM Hall & D Fabian, pers. comm.). G. spurium is a diploid (2n ¼ 20) and no polyploidy has been observed (Malik & Vanden Born, 1988). In contrast, G. aparine is typically polyploidy with the hexaploid (2n ¼ 66) most often observed (Malik & European Weed Research Society Weed Research 2004 44, 355–365 Herbicide resistance in Galium spurium 357 Vanden Born, 1988). Although, very little is known about the reproduction biology of G. spurium, generally, the Galium spp. are considered to be predominately selfpollinating (Ehrendorfer, 1971; Faegri & Van den Pijl, 1971; Moore, 1975; Malik & Vanden Born, 1988), but the level of out-crossing in G. spurium is not known. Plants were grown for seed production in the greenhouse in Alberta. At the University of Guelph, Canada, four to five breeding lines were established from the Alberta seed stock by subjecting R and S plants to two more generations of self-pollination. To ensure self-pollination, the entire plant was placed in a glassine pollination bag (Cryovac, Mississauga, ON, Canada) approximately 6 weeks after planting and prior to flowering. Plants readily self pollinated, with >1000 seeds produced per plant. Plants, which developed from seed produced after the second self-pollination, were used for reciprocal crosses to produce F1 progeny, or sprayed with either quinclorac or thifensulfuron as described below. Genetic crosses and production of F1, F2, F3, and backcross generations Reciprocal crosses were performed with individual R and S plants from the parental lines. G. spurium flowers were 1–1.5 mm in diameter, with four anthers and two pistils, with two seeds per flower. For detailed descriptions of flower morphology see Malik and Vanden Born (1988). To produce F1 progeny, individual axillary flower peduncles were selected. All open flowers and immature flower buds were physically removed. Under microscopic examination, unopened flowers were dissected with ultra fine forceps. All four anthers were removed without damaging the two pistils and ovary. The emasculated flowers on individual axillary peduncles were wrapped and sealed in a 5 cm · 12 cm glassine bag to prevent unwanted pollination, and the entire plant was enclosed in another glassine bag. The second day after emasculation, pollen from the male parent plant was placed on the receptive stigmas. Any nonpollinated flowers and immature flower buds were removed prior to resealing each individual axillary flower peduncle in a small pollination bag and enclosing the entire plant in another pollination bag. Seeds were allowed to develop to maturity on the plant inside the pollination bags. Terminal flower stems were not used for crosses because of the high density of flowers at various stages of development, including dormant flower buds. To ensure that pollination was controlled (i.e. selfing was zero), flowers were emasculated but not pollinated. F1 seed was germinated and grown to maturity to produce plants for F2 seed production, for backcrosses European Weed Research Society Weed Research 2004 44, 355–365 with S parents (designated F1BC1), or for screening with either herbicide. Ten of 149 germinating F1 plants were grown to flower and self-pollinated to produce F2 seed. Six pairs of backcrosses between F1 hybrids and S parents were performed as previously described. F2 plants at approximately the three-whorl stage of development were screened with either herbicide as described below. Fourteen days after herbicide treatment, plant survival was determined and plants were classified as R or S by comparing their responses with those of herbicide-treated R and S parental plants. Twelve F2 plants that survived quinclorac treatment were grown to maturity and self-pollinated to produce F2-derived F3 progeny. F3 seeds were sown and grown to approximately the three-whorl stage of development, treated with either herbicide and classified as R or S as described elsewhere. Herbicides used Quinclorac [Accord 75 DF, 75% (wt/wt) a.i., DF; BASF Canada] was applied with Merge (BASF Canada), an adjuvant containing a 1 : 1 surfactant and petroleum hydrocarbon solvents blend. Thifensulfuron [Pinnacle 75 DF, 75% (wt/wt) a.i., DF; Dupont Canada] was used with non-ionic surfactant Agral 90 (Dupont Canada), which contains 90% nonylphenoxy polyethyoxy ethanol. Dose–response experiments Dose–response experiments were conducted to determine the appropriate dose for use in inheritance studies. G. spurium were sprayed at approximately the threewhorl stage of foliar development with the formulated product and recommended adjuvant of quinclorac or thifensulfuron at doses ranging from 10.4 to 1500 g a.i. 1 ha)1 (12 · to 12· the recommended field dose of 1 125 g a.i. ha)1) or 0.38 to 96 g a.i. ha)1 (16 · to 16· the )1 recommended field dose of 6 g a.i. ha ) respectively. Spray applications were conducted with a motorized hood sprayer equipped with a flat-fan nozzle (TeeJet, 80015E, Spraying Systems, Guelph, Canada) calibrated to deliver 110 L ha)1 of spray solution at 250 kPa. Quinclorac- and thifensulfuron-treated plants were harvested 14 or 21 days after treatment (DAT), respectively, by severing the shoot at the soil level. Percentage survival and shoot dry weights were determined. Herbicide treatment of F1, F2, F3, and F1BC1 generations Plants were screened with only one herbicide, either quinclorac or thifensulfuron, at the recommended field 358 L L Van Eerd et al. dose of 125 or 6 g a.i. ha)1 respectively. Plants were sprayed at approximately the three-whorl stage of foliar development. Spray applications were conducted as previously described. Fourteen DAT, plant survival was determined and plants were classified as either R or S by comparing their phytotoxic response with that of herbicide-treated R and S parental seedlings. Statistical analysis Dose–response experiments were conducted as completely randomized designs with at least five replications per treatment and each experiment repeated once. Shoot dry-weight data were expressed as a percentage of the mean of the non-treated control prior to statistical analysis with the general linear model (PROC GLM) using SAS 8.02 software (SAS Institute, Cary, NC, USA). Shoot dry-weight data were expressed as a nonlinear model and the GR50 [dose (g a.i. ha)1) required to reduce shoot growth by 50% compared with the non-treated control] values were calculated with the nonlinear model (PROC NLIN) using SAS 8.02 software (SAS Institute, Cary, NC, USA). For each herbicide, plant mortality data was expressed as a generalized linear model (GLM) with a binomial response distribution and a probit link function (Bailer & Oris, 1997). Lethal concentration estimates (LD50; the lethal dose (g a.i. ha)1) to 50% of the plants tested) were obtained by solving the generated model for herbicide dose. For each herbicide, R and S phenotype frequencies were tabulated for F1, F2, F3, and F1BC1 generations. Goodness-of-fit to specific genetic ratios was determined using the chi-square (v2) test. The Yates correction term was used when there was only one degree of freedom. Homogeneity tests, using (v2) values without the Yates correction term, were conducted and data were pooled, where possible. For genetic models, twogene loci were considered: one locus for the quinclorac response (Qq) and the other for the thifensulfuron response (Tt), with Q and T being dominant over q and t respectively. The type I error rate (a) was 0.05 for all statistical tests. These results indicated that the breeding lines were homozygous for both quinclorac and ALS-inhibitor response. Dose–response The R biotype was resistant to quinclorac; LD50 values could not be calculated because there was no mortality at any dose tested (10.4–1500 g a.i. ha)1) (Fig. 1A). The calculated GR50 value for the R biotype treated with quinclorac was 266.25 g a.i. ha)1. The calculated LD50 and GR50 values for the quinclorac-treated S biotype were 48.75 and 6.25 g a.i. ha)1 respectively. At the lowest dose tested (10.4 g a.i. ha)1), there was a significant reduction in the shoot biomass of the S biotype compared with that of the non-treated control (Fig. 1C). Symptoms of quinclorac phytotoxicity in the S biotype included leaf hyponasty, reduced leaf area, chlorosis, necrosis, and plant death. Furthermore, despite reduced shoot growth in R plants treated with 1500 g a.i. ha)1 of quinclorac, there were no phytotoxic symptoms other than minor chlorosis of some leaf tips. The R G. spurium biotype was also resistant to thifensulfuron (Fig. 1B,D); LD50 and GR50 values could not be calculated for the R biotype because there was no mortality or significant dry weight reduction at any dose tested (0.38–96 g a.i. ha)1) (Fig. 1B,D). The calculated LD50 and GR50 values for the S biotype were 15.48 and 0.60 g a.i. ha)1 of thifensulfuron respectively. Symptoms of thifensulfuron phytotoxicity in the S biotype included inhibition of shoot growth, chlorosis, necrosis, and plant death. Despite up to a 60% reduction in shoot growth in R plants treated with very high doses of thifensulfuron, there were no observed phytotoxic symptoms 21 DAT. The recommended field doses of 125 or 6 g a.i. ha)1 of quinclorac or thifensulfuron, respectively, were selected for screening of F1, F2, F3, and F1BC1 plants. These doses were used because they represent the LD95 and GR95 for the S biotype treated with quinclorac and thifensulfuron respectively. The LD95 and GR95 dose clearly differentiates between R and S individuals (Fig. 1). F1 Results After each generation of controlled self-pollination, all tested R progeny (n ¼ 178) were resistant and all tested S progeny (n ¼ 175) were susceptible to both herbicides applied separately at the field dose (data not shown). Furthermore, no S plant was observed in the parental R seed stock and vice versa, which was used in our dose– response experiments (n ¼ 270) and in dose–response experiments conducted by Hall and colleagues (1998). The generation time, from seed to seed, was c. 4 months. Self- and cross-pollinated seeds readily germinated and no seed dormancy was observed. Based on emasculation without pollination, the pollination procedure was deemed successful because no seeds were produced as a result of uncontrolled pollination. F1 seed was sown and grown to generate the F2 population or used for backcrossing with S parental plants to produce F1BC1 progeny. The remaining F1 seeds were used in herbicide European Weed Research Society Weed Research 2004 44, 355–365 Herbicide resistance in Galium spurium 359 100 Resistant Resistant Survival (%) 80 60 40 20 Susceptible 0 Susceptible a c Shoot dry weight (% of untreated control) 100 80 Resistant 60 Resistant 40 Susceptible 20 Susceptible c d 0 0 7.8 15.6 31.25 62.5 125 250 500 1000 1500 0 Quinclorac Dose (g a.i. ha–1) 0.38 0.75 2 3 6 12 24 48 96 192 Thifensulfuron Dose (g a.i. ha–1) Fig. 1 Response characterized by percent survival (A, B) and reduction in shoot dry weight (C, D) of herbicide-resistant and -susceptible Galium spurium treated with the formulated products of either quinclorac (left) or thifensulfuron (right) and harvested 14 or 21 days after treatment respectively. Symbols represent sample means with standard error bars. Where no standard error bar is shown the standard error is smaller than the symbol. response experiments. F1 plants treated with 125 g a.i. ha)1 of quinclorac segregated in a 0 : 1 ratio (R : S; v2 ¼ 2.05 and P ¼ 0.15; data not shown) suggesting that quinclorac resistance may be a recessive trait. Of the 45 F1 plants sprayed with quinclorac, there was only one plant with an intermediate phenotype 21 DAT. There were no observed thifensulfuron-treated F1 plants (n ¼ 35) with an intermediate phenotype. At the recommended field dose, thifensulfuron-treated F1 plants segregated in a 1 : 0 ratio (R : S; v2 ¼ 0.86 and P ¼ 0.35; data not shown) indicating that thifensulfuron and thus ALS-inhibitor resistance may be a dominant trait. Dominance versus co-dominance of herbicide resistance based on herbicide dose–response experiments on the F1 could not be investigated in G. spurium plants because: (i) seed production was severely limited because of the laborious nature of crossing, i.e. only two seeds per 1.5 mm flower, (ii) there were no phenotypical markers for resistance (i.e. there were no phenotypic differences between the R and S biotypes); therefore, it European Weed Research Society Weed Research 2004 44, 355–365 was not possible to distinguish between successful F1 crosses and self-pollinated individuals without spraying and thereby sacrificing S plants and (iii) in cases where herbicide resistance is a recessive trait, treating F1 plants would be ineffective because the F1 heterozygote would have a susceptible phenotype and all F1 plants would die as a result of herbicide treatment. Therefore, non-treated F1 G. spurium plants were self-pollinated to produce F2 progeny. F2 There were no inheritance differences between reciprocal crosses for either herbicide, suggesting that nuclear gene(s) were involved (Table 1). With respect to quinclorac, segregation in the F2 generation did not differ from a 1 : 3 ratio (R : S; pooled v2 ¼ 0.10 and P ¼ 0.75; Table 1) indicating that quinclorac resistance at 125 g a.i. ha)1 in G. spurium was controlled by a single, recessive nuclear gene system. In the F2 generation sprayed with the field dose of thifensulfuron, segregation 360 L L Van Eerd et al. Table 1 R and S segregation in Galium spurium F2 generation in response to treatment with quinclorac or thifensulfuron* Quinclorac Cross $ · # F2 designation R2 · S2 R3 · S3 S1 · R1 S1 · R1 S1 · R1 S3 · R3 S3 · R3 R3 · S3 R2 · S2 R3 · S3 1 2 3 4 5 6 7 8 9 10 Thifensulfuron 2 No. of plants v R:S§ 1:3 expected 6:21 3:30 11:23 5:31 10:24 22:58 10:23 10:27 13:61 25:59 P No. of plants v2 R:S§ 3:1 expected P 0.11 4.45 0.98 2.37 0.35 0.27 0.49 0.08 2.18 1.02 0.74 0.03 0.32 0.12 0.55 0.60 0.48 0.78 0.14 0.31 21:6 21:15 25:9 23:10 23:11 63:19 26:14 30:7 48:20 60:15 0.11 5.33 0.04 0.49 0.98 0.11 2.13 0.73 0.70 1.00 0.74 0.02 0.84 0.48 0.32 0.74 0.14 0.39 0.40 0.32 12.30 0.10 12.20 0.26 0.75 0.20 340:126 11.62 1.03 10.59 0.31 0.31 0.30 Deduced F1 genotypeà Qq Qq Qq Qq Qq Qq Qq Qq Qq Qq Tt Tt Tt Tt Tt Tt Tt Tt Tt Tt Homogeneity Chi Square: All populations Total Pooled Homogeneity d.f. ¼ 10 d.f. ¼ 1 d.f. ¼ 9 115:357 *Fourteen days after application of the formulated product of quinclorac or thifensulfuron at the recommended field dose of 125 or 6 g a.i. ha)1 respectively. Chi square values (v2) with associated probabilities (P) were the result of tests for goodness of fit to a 1:3 and 3:1 (R:S) segregation ratio for quinclorac and thifensulfuron respectively. The type I error rate (a) was 0.05 for all statistical tests. à For genetic models, two gene loci were considered; one locus for the quinclorac response (Qq) and one for the thifensulfuron response (Tt), with Q and T being dominant over q and t respectively. § Resistant (R) and susceptible (S) classification was based on comparison with herbicide-treated R and S parental plants. did not differ from a 3 : 1 ratio (R : S; pooled v2 ¼ 1.03 and P ¼ 0.31; Table 1). These results indicate that thifensulfuron resistance at the field dose in G. spurium was conferred by a single, dominant nuclear allele. orac did not differ from the expected 0 : 1 (R : S) ratio (Fig. 2; Table 2). These results confirm that quinclorac resistance at the field dose in G. spurium was due to a recessive trait at a single, nuclear locus. Thifensulfurontreated F1BC1 plants segregated in the expected 1 : 1 (R : S) ratio (Fig. 2; Table 2), providing further evidence that ALS-inhibitor resistance was a single, dominant nuclear trait when treated at the field dose. Moreover, the segregation pattern of reciprocal F1BC1 Segregation among the progeny of backcrosses between F1 hybrids and the S parental line treated with quincl- S parent (QQ tt) Alleles Q F1 (Qq Tt) t Q T QQ Tt S-quinclorac, R-ALS q T Qq Tt S-quinclorac, R-ALS Q t QQ tt S-quinclorac, S-ALS q t Qq tt S-quinclorac, S-ALS Genotype Expected phenotypic ratios: Phenotype Quinclorac 0:1 (R:S) ALS 1:1 (R:S) Fig. 2 Segregation pattern of a two-gene model for backcrosses between F1 hybrids and S parental Galium spurium plants (F1BC1) treated with the formulated product of either quinclorac or thifensulfuron at 125 or 6 g a.i. ha)1 respectively. For the genetic model, there was one locus for the quinclorac response (Qq) and one for the thifensulfuron response (Tt), with Q and T being dominant over q and t respectively. ÔSÕ indicates susceptible response and ÔRÕ indicates resistance response to the herbicide. European Weed Research Society Weed Research 2004 44, 355–365 Herbicide resistance in Galium spurium 361 Table 2 R and S segregation in Galium spurium progeny among backcrosses between F1 hybrids and S parents (F1BC1) in response to treatment with quinclorac or thifensulfuron F1 backcrosses $ · # Genotype of parents S · (R · S) S · (S · R) (R · S) · S (S · R) · S Total Pooled Homogeneity QQtt · QqTt QQtt · QqTt QqTt · QQtt QqTt · QQtt d.f. ¼ 3 d.f. ¼ 1 d.f. ¼ 2 Quinclorac Thifensulfuron No. of plants No. of plants v2à R:S§ R:S§ 1:1 expected 0:12– 0:5 0:15 0:16 3:7 4:2 8:6 7:7 18:20 1.6 * 0.28 0 1.88 0.10 1.78 Pà 0.20 * 0.59 1 0.60 0.74 0.41 *Chi-squared test (v2) requires a minimum of 5 in the smallest class; the test could not be performed. Fourteen days after application of the formulated product of quinclorac or thifensulfuron at the recommended field dose of 125 or 6 g a.i. ha)1 respectively. à Chi-square values (v2) with associated probabilities (P) were the result of tests for goodness-of-fit to a 1:1 (R:S) segregation ratio for thifensulfuron. The type I error rate (a) was 0.05 for all statistical tests. § Resistant (R) and susceptible (S) classification was based on comparison to herbicide-treated R and S parental plants. – A 0:1 ratio was expected. Chi-squared tests were not possible because there is only one class. backcrosses [i.e. S · (R · S), S · (S · R), (R · S) · S, (S · R) · S] provide further evidence that the locus/loci for resistance were located in the nucleus for both herbicides (Table 2). thifensulfuron, further supporting the genetic model that ALS-inhibitor resistance in G. spurium was conferred by a single, dominant nuclear allele. Discussion F3 To test the two-gene model, F2 plants that survived quinclorac treatment were self-pollinated and allowed to set seed. The resulting F2-derived F3 progeny were screened for herbicide resistance. As expected, F3 plants sprayed with 125 g a.i. ha)1 of quinclorac segregated in a 1 : 0 ratio (R : S; v2 ¼ 0.03 and P ¼ 0.86; Table 3). Thus, the quinclorac-resistant F2 progenitors were homozygous at the quinclorac-resistance locus and had a genotype of qq. This provides further support for the genetic model that at the field dose quinclorac resistance was mediated by a single, recessive nuclear allele in G. spurium. In the 12 F2-derived F3 populations tested, thifensulfuron response segregated into three R : S ratios, 1 : 0, 3 : 1, and 0 : 1, indicating three F2 parental genotypes of TT, Tt, and tt, respectively, providing further evidence that ALS inhibitor resistance was mediated by a single, dominant nuclear allele (Table 3). Because the F2 progenitors were homozygous for quinclorac resistance (qq) and either homozygous (TT or tt) or heterozygous (Tt) for ALS-inhibitor resistance, resistance to each herbicide was controlled by two separate loci, which were not tightly linked. Six F3 families (designated 1c, 2e, 2f, 3g, 3h, and 4j) segregated in a 3 : 1 ratio (R : S; pooled v2 ¼ 0.65 and P ¼ 0.42; Table 3) when sprayed with the field dose of European Weed Research Society Weed Research 2004 44, 355–365 The R G. spurium biotype had one gene system controlling quinclorac resistance and another one for ALS-inhibitor resistance. The inheritance of ALS-inhibitor resistance in G. spurium was similar to all other characterized target-site based ALS-inhibitor-resistant plant species, which is due to a dominant allele at a single, nuclear locus. However, based on other researchersÕ results, the degree of dominance can vary from incomplete to complete (Mallory-Smith et al., 1990; Tranel & Wright, 2002). In contrast, quinclorac resistance at the field dose in G. spurium was mediated by a recessive allele at a single, nuclear gene. The inheritance of quinclorac resistance in various monocot species has not been characterized. The use of the F3 to identify two separate herbicide resistance mechanisms in one plant was a novel approach. Many other options were explored including foliar application of two herbicides at once on one plant, but this approach would only identify individuals that were resistant to both herbicides. Likewise, the method of treating numerous plants with one herbicide followed by treatment of survivors with the other herbicide 2 weeks later would only provide information on plants that were resistant to the initial herbicide. With sequence treatments there would be the potential for synergism of the two herbicides or age-related effects of the plants. Plant clones via 362 L L Van Eerd et al. Table 3 R and S segregation in Galium spurium F2-derived Fy3 generation in response to treatment with quinclorac or thifensulfuronà Quinclorac Thifensulfuron – F1 Cross $ · # F3 designation§ Expected ratio R:S (No. of plants) Expected ratio R2 · S2 1a 1b 1c 2d 2e 2f 3g 3h 3i 4j 4k 4l 1:0àà 1:0 1:0 1:0 1:0 1:0 1:0 1:0 1:0 1:0 1:0 1:0 19:2 30:0 13:0 28:1 25:0 20:0 24:0 11:0 37:0 20:0 35:0 26:0 0:1àà 0:1 3:1** 1:0 3:1 3:1 3:1 3:1 0:1 3:1 0:1 0:1 R3 · S3 S1 · R1 S1 · R1 Homogeneity chi-square Total Pooled Homogeneity R:S– (No. of plants) 0:39 0:56 10:3 43:0 38:9 36:10 31:14 20:10 0:33 23:13 0:50 0:35 v2** P** * * 0.86 0.26 0.90 1.11 0.36 0.61 0.34 0.29 2.37 0.12 5.50 0.65 4.85 0.36 0.42 0.3 Deduced F2 genotype qq qq qq qq qq qq qq qq qq qq qq qq tt tt Tt TT Tt Tt Tt Tt tt Tt tt tt Segregating families: 2e, 2f, 3g, 3h, 4j d.f. ¼ 5 d.f. ¼ 1 d.f. ¼ 4 148:56 *Chi-squared test (v2) requires a minimum of 5 in the smallest class; the test could not be performed. F3 generation was derived from F2 progenitors, which survived quinclorac treatment. à Fourteen days after application of the formulated product of quinclorac or thifensulfuron at the recommended field dose of 125 or 6 g a.i. ha)1 respectively. § The different letters in the F3 designation indicate different F2 progenitors. F3 populations designated with the same number were generated from the same F2 population, which resulted from the F1 cross indicated in the table. – Resistant (R) and susceptible (S) classification was based on comparison with herbicide-treated R and S parental plants. **Chi-square values (v2) with associated probabilities (P) were the result of tests for goodness-of-fit to a 3:1 (R:S) segregation ratio for thifensulfuron. The type I error rate (a) was 0.05 for all statistical tests. For genetic models, two gene loci were considered; one locus for the quinclorac response (Qq) and one for the thifensulfuron response (Tt), with Q and T being dominant over q and t respectively. àà Chi-squared tests were not possible where 1:0 and 0:1 ratios were expected because there is only one class. cuttings and in vitro multiplication was investigated but G. spurium was not easily amenable to cloning and the few acceptable clones that were produced quickly flowered. Furthermore, there was a concern that the response of clones to auxinic herbicide treatment might be affected by the propagation techniques, particularly because herbicide efficacy changes with plant age, especially with auxinic herbicides. In retrospect, a non-destructive test would have been an alternative approach to testing two herbicides in one plant. For instance, to determine acetyl-CoA carboxylase inhibitor resistance or susceptibility 3 lL of 1.05 mM diclofop-methyl solution was spotted onto Avena fatua L. leaves (Seefeldt et al., 1998). If necrosis occurred, then the plant was classified as susceptible. A similar test could be modified for G. spurium to characterize response to thifensulfuron based on the Ôspot testÕ. In the same plant, whole-plant response to quinclorac could be determined by foliar application a few days after the spot test. Regardless, the relatively quick generation time of G. spurium facilitated the use of the F3. It has been generally accepted that herbicide resistance is mainly controlled by single, nuclear dominant or co-dominant alleles (Jasieniuk et al., 1996). However, it is evident from the increasing discoveries of recessive herbicide resistance, such as trifluralin resistant Setaria viridis (L.) Beauv. (Jasieniuk et al., 1994), triallate resistant A. fatua (Kern et al., 2002), dinitroanaline resistant Eleusine indica (L.) Gaertn. (Zeng & Baird, 1999), auxinic herbicide resistant C. solstitialis (Sabba et al., 2003) and now quinclorac-resistant G. spurium, that recessive alleles do confer herbicide resistance. All the aforementioned weed species with recessive herbicide resistance, with the exception of C. solstitialis, are predominantly self-pollinating species. A self-pollinating breeding system facilitates the accumulation of a recessive trait within these populations (Jasieniuk et al., 1996). Although the rate of outcrossing of G. spurium is not known, G. spurium is a predominately self-pollinating species (Malik & Vanden Born, 1988), which provides support for the accumulation of R individuals without quinclorac selection pressure. European Weed Research Society Weed Research 2004 44, 355–365 Herbicide resistance in Galium spurium 363 Even when the resistance trait is a dominant allele at a single nuclear locus, as in acetyl-CoA carboxylase inhibitor resistant A. fatua, a predominantly selfpollinating species, the observed rate of outcrossing when grown in a Triticum aestivum L. crop is only 0.05% (Murray et al., 2002). Likewise, the spread of quinclorac resistance in G. spurium through pollenmediated gene flow is expected to be minimal. Therefore, it is imperative that control of this R G. spurium biotype focus on containment and eradication of its seed. Provided that seed of the R biotype is contained within the field where it is located, the likelihood for widespread quinclorac resistance in other G. spurium populations throughout the Canadian prairies is likely to be low for the following reasons: (i) viability of seed is typically 1–3 years (Malik & Vanden Born, 1988), (ii) the resistance trait is recessive, and (iii) pollen-mediated gene flow is expected to be minimal because of the predominantly self-pollinating nature of G. spurium. In fact, numerous G. spurium populations were screened for herbicide resistance, but no others had quinclorac resistance (LM Hall, pers. comm.). Moreover, resistance in other auxinic herbicide-resistant species has not become widespread, regardless of the inheritance mechanism (LM Hall, pers. comm.; Cranston et al., 2001; Sabba et al., 2003; Heap, 2004). Consequently, there is little evidence to suggest that quinclorac-resistant G. spurium will be a problem in the Canadian prairies or elsewhere. Nonetheless, good agronomic management practices should be maintained to avoid resistance development. Previously, it was generally assumed that for expression of auxinic herbicide resistance, there would need to be mutations at several loci. With the accumulation of information on the inheritance of auxinic herbicide resistance (Jasieniuk et al., 1995; Sabba et al., 2003) including quinclorac-resistant G. spurium, it is evident that a mutation at a single nuclear locus is adequate to cause the expression of auxinic herbicide resistance. Therefore, it is unlikely that auxinic herbicides have multiple mechanisms of action. The single gene product that controls quinclorac resistance in G. spurium and auxinic herbicide resistance in S. arvensis (Jasieniuk et al., 1995) and C. solstitialis (Sabba et al., 2003) is hypothesized to be either an auxin target-site protein or a protein along the auxin signal transduction pathway. When herbicide resistance to two or more target-site chemistries is caused by more than one genetic mutation, it is considered multiple resistance, as is the case with this R G. spurium biotype. There are a few weed biotypes with multiple-herbicide resistance such as Lolium spp. (Preston et al., 1996; Kuk et al., 2000), A. fatua (Nandula & Messersmith, 2003), K. scoparia (Foes et al., 1999) and Amaranthus powellii S. Wats. (Diebold et al., European Weed Research Society Weed Research 2004 44, 355–365 2003). Moreover, there are at least four other additional weed biotypes with resistance to the auxinic herbicides and the ALS inhibitors, including Papaver rhoeas L. in Spain, K. scoparia in Montana, USA, as well as Limnophila erecta Benth. and Limnocharis flava (L.) Buchenau in Malaysia (Heap, 2004). The inheritance of auxinic herbicide resistance is not known in these aforementioned biotypes. The widespread use of auxinics and ALS inhibitors has likely lead to the development of these biotypes (Heap, 2004). However, in G. spurium, although ALS-inhibitor use was somewhat intensive, quinclorac had never been used before. If one considers mutation rates commonly observed in plants at typical field densities of G. spurium, it is obvious that even with no selection pressure from frequent quinclorac use, the occurrence of at least one plant with resistance to both ALS-inhibitors and quinclorac is very likely (Table 4). For example, if one assumes a G. spurium density of 5 plants m)2 (Leeson et al., 2002) in a 30-ha field and a mutation rate of 1 · 10)6 gametes per locus per generation for both quinclorac and ALS-inhibitor resistance in a predominantly self-pollinating species (Jasieniuk et al., 1996), the probability of occurrence of one G. spurium plant with resistance to both herbicides would be 58% (Table 4). However, these tabulated probabilities do not take into account initial frequencies of resistance alleles, selection pressure because of frequent applications of ALS-inhibitor herbicides, weed fitness, and gene flow, which may increase the probability of occurrence of a plant with resistance to both quinclorac and ALS-inhibitor herbicides. Thus, although quinclorac was not previously used on the field where the R biotype was located, it is conceivable, based on mutation rates, weed densities and inheritance, that two distinct resistance mechanisms may arise in one plant without selection pressure to both herbicides. Furthermore, R individuals will rapidly accumulate in the field because G. spurium is predominately self-pollinated, it is usually found in the field in high abundance, i.e. >10 plants m)2 (Leeson et al., 2002), and one plant typically produces 3500 seeds (Malik & Vanden Born, 1988). With regard to the development of quinclorac resistance without herbicide selection, it may be that the gene controlling quinclorac resistance in G. spurium is particularly prone to spontaneous mutations. Perhaps Ônaturally occurringÕ resistant populations of G. spurium existed prior to quinclorac registration. However, this is unlikely because no other quinclorac-resistant G. spurium biotype has been found in weed surveys conducted in Alberta, Canada (LM Hall pers. comm.). Alternatively, extensive auxinic herbicide use may have selected for the resistance mutation. The R and S G. spurium biotypes were tolerant to the auxinic herbicides 2,4-D and clopyralid (Van Eerd, 2004). Only the R was highly 364 L L Van Eerd et al. Mutation rate (gametes/locus/generation) Density (per m2) 1 · 10)6 1 5 50 500 1 5 50 500 1 5 50 500 1 · 10)8 1 · 10)10 Probability of occurrence of one resistant G. spurium plant* Quinclorac ALSà Both herbicides§ 0.24 0.74 1.00 1.00 0.03 0.01 0.13 0.74 0.00003 0.0001 0.001 0.01 0.28 0.78 1.00 1.00 0.003 0.02 0.15 0.81 0.00003 0.0002 0.002 0.02 0.07 0.58 1.00 1.00 9 · 10)5 2 · 10)4 0.02 0.60 9 · 10)10 2 · 10)8 2 · 10)6 2 · 10)4 Table 4 Probabilities of occurrence of at least one resistant mutant G. spurium plant in a 30 hectare field with varying weed densities. Adapted from Jasieniuk and colleagues (1996) *Assuming that G. spurium is a 95% self-fertilizing species. Based on quinclorac resistance due to a single, recessive nuclear mutation. à Based on ALS-inhibitor resistance due to a single, completely dominant nuclear mutation. § Two gene mutations based on probability of quinclorac resistance · probability of thifensulfuron resistance. resistant to the quinolinecarboxylic acids, moderately resistant to MCPA, and resistant to the auxinic herbicides dicamba, picloram, fluroxypyr, and triclopyr (Van Eerd, 2004). Therefore, selection of the R biotype may have been due to the previous use of auxinic herbicides other than quinclorac. Ultimately, the elucidation and characterization of the target site of quinclorac is required to provide insight into the possible link between quinclorac and auxinic herbicide resistance in G. spurium. This is the first characterization of quinclorac resistance inheritance. To our knowledge, this is the first time an F3 population has been developed to illustrate that resistance to two different modes of action was due to two distinct genes. At the field dose, quinclorac resistance in G. spurium is mediated by a recessive allele at a single, nuclear locus. Conversely, ALS-inhibitor resistance was a dominant trait at a single, nuclear locus. The knowledge of the inheritance of quinclorac resistance will likely facilitate a better understanding of the genetic and biochemical mechanisms of auxinic herbicide resistance. Acknowledgements JCH and LL Van Eerd thank the Natural Sciences and Engineering Research Council (NSERC) of Canada for providing an NSERC Research Grant and NSERC graduate scholarship, respectively, and the Ontario Ministry of Agriculture and Food (OMAF) for their financial support of this research. 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