Uniquely aligned
(A)
(B)
Aligned two times
Perfect match
1 mismatch
2 mismatch
20
0.6
0.6
2
3
4
5
6
7
8
9
10
11
12
13
14
Log2(Reads count)
15
16
17
18
19
0
1
0
0
0
-7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5
Log2(RPKM)
6
7
8
9
10
11
12
13
Standard Deviation
Frequency (%)
15
10
Standard Deviation
5
15
10
5
0
Frequency (%)
Sib
-/rx3
25
(D)
Sib
-/rx3
20
(C)
25
Aligned >=three
times
Reads without
alignment