Journal of Ptanktoo Research Vol.18 no.9 pp.1521-1533, 1996 Rates of microbial degradation of dissolved organic carbon from phytoplankton cultures Wenhao Chen and Peter J.Wangersky1 Department of Oceanography, Dalhousie University, Halifax, Nova Scotia, B3H 4JI, Canada 'To whom correspondence should be addressed at: School of Earth and Ocean Sciences, PO Box 1700, University of Victoria, Victoria, BC, V8W2Y2, Canada Abstract Dissolved organic carbon (DOC) decay was measured for samples from cultures of the diatoms Chaetoceros grecilii and Phaeodactyhun tricomutum, the flagellate Isochrysis galbana, the dinoflagellate Alexandrium tamarense, and a natural algal assemblage from the Northwest Arm, Nova Scotia, Canada, by a high-temperature catalytic oxidation (HTCO) method. Decay rate constants were determined using first-order reaction kinetics in the multi-G model of Benter (In Early Diagenais, a Theoretical Approach, Princeton University Press, 1980). Decay rates as high as 037 day-1 were obtained, which demonstrated that DOC released by phytoplankton might be highly labile to bacterial utilization and could be degraded significantly within hours. Decay rates for most species tested followed much the same pattern, with KOi values around 03-0.4, A^ values around 0.03, and Km and A^ values around 10~3 day 1 . DOC released by the senescent cells of A.Uonarense was found to be essentially bacteria resistant, in contrast to that of the other species tested. The decay of DOC was directly temperature dependent over the 10-20°C range. Six methods for DOC preservation were tested. Acidification with HC1 and refrigerated storage was demonstrated to be the most convenient and practical method. This method can be used for both short- and long-term preservation of DOC samples containing highly labile organic compounds. Introduction The breakdown of photosynthetically fixed organic carbon in the oceans is one of the most important transformations in the global carbon cycle. Yet, there is surprisingly little agreement on the processes involved and the rates by which particulate and dissolved organic carbon (POC and DOC) are recycled to carbon dioxide and inorganic nutrients. Most DOC in seawater is considered to be resistant to microbial mineralization (Barber, 1968; Menzel, 1970). The few estimates of the fraction that is biologically 'labile' are typically in the range of 1-50% of the total DOC (Ammerman et al., 1984; Carlucci et al., 1987). Recent controversy over the actual quantity of DOC present in seawater suggests that the labile fraction could have been significantly underestimated, especially in surface waters (Sugimura and Suzuki, 1988), although the actual size of the underestimation is now open to question (Suzuki, 1993). As observed in studies of POC mineralization (Westrich and Berner, 1984; Pert, 1989), bulk seawater DOC is also mineralized in two or more stages (Ogura, 1972, 1975).The proportions of these fractions in the total DOC, however, are extremely variable in time and space, depending on the activities of the primary producers and their consumers. Consumption and transformation of DOC by bacteria rapidly eliminates much of the low-molecular-weight fraction of DOC, leaving the more refractory materials to accumulate in seawater (Wolter, 1982; Chrost and Faust, 1983; Iturriaga and Zsolnay, 1983; Jensen, 1983; Bell, 1984; Brophy and O Oxford University Press 1521 W.Chen and PJ.Wangenky Carlson, 1989). It is indicative of the degree of variability, perhaps locally, in the composition of the DOC that other workers have reported faster turnover rates for the higher-molecular-weight materials (Araon and Benner, 1994). Numerous determinations of uptake kinetics for bulk seawater DOC and algal exudates have yielded turnover times ranging from hours to years. Most of the determinations were based on either short-term radiotracer investigations of simple organic compounds (Wright and Hobbie, 1966; Gocke, 1977; Hagstrom et al., 1984) and phytoplankton exudates and detritus (Iturriaga and Hoppe, 1977; Iturriaga and Zsolnay, 1983; Biddanda, 1988; Pert, 1989), or trace analyses of extremely labile exudates released by algae (Brockmann et al., 1979; Mopper and Lindroth, 1982; Lancelot and Billen, 1984; Bauerfeind, 1985). These studies have given some insight into the dynamics of bacterial uptake of simple labile components of dissolved organic matter in natural waters. However, these determinations have their limitations.The single substrates added might be taken up in a manner different from that of naturally occurring, more complex mixtures of solutes. At best, the technique of adding labeled organic compounds to samples of seawater measures a rate of utilization of a specific compound by some small portion of the population present At worst, it selects conditions favorable only to bacterial utilization (Wangersky, 1978). On the other hand, no single substrate is used with equal efficiency by all bacteria; the choice of substrate determines the uptake rate measured (Hamilton and Preslan, 1970; Douglas, 1983). Therefore, for all 14C uptake measurements, the question remains as to whether the simple 14C-labeled compounds used are taken up in the same way as the more varied and complex 12C substrates already in the water sample (Bauerfeind, 1985). The uptake rates for the extremely labile compounds do not represent the bacterial uptake rates for bulk DOC in natural seawater, as demonstrated in this paper. The kinetic studies on the uptake of simple organic substrates mentioned earlier are normally conducted by the addition of relatively simple compounds of low molecular weight, such as amino acids and monosaccharides, and are thus likely to apply only to the relatively small labile component of photoassimilated carbon released during the decomposition phase of a phytoplankton bloom. Furthermore, the recent work already mentioned suggests that a portion of the DOC released both during log-phase growth and senescence, unlike the simple pure compounds usually used in addition experiments, is not susceptible to UV photo-oxidation.The composition of this fraction is unknown, except that it seems to contain neither nitrogen (Walsh, 1989) nor phosphorus (Ridal and Moore, 1992). To avoid the problems involved in the above methods, degradation of phytoplankton detritus has been followed by POC and DOC analyses (Newell et al., 1981) or oxygen consumption (Bauerfeind, 1985). Degradation of intact cells (Fukami et id., 1985) was followed by POC and DOC measurements. However, few rates of DOC degradation have been obtained by these methods. All DOC analyses in these experiments were done by wet UV or chemical oxidation methods, which have been shown to underdetennine DOC content significantly (Chen and Wangersky, 1993a,b; Wangersky, 1993). No experiments have been run with dissolved phytoplankton exudates only, and DOC was not measured by hightemperature catalytic oxidation (HTCO) methods in the experiments reported. 1522 Rates of degradation of DOC While a number of researchers have reported little or no difference between wet oxidation and high-temperature combustion analyses of oceanic samples (Ogura and Ogura, 1992; de Baar et al., 1993; Sharp et al., 1993a;Tugrul, 1993), what is actually stated in these papers is that the differences found lie within the variability of the two methods. Much of the variability in the HTCO method is the result of uncertainty in the method of handling the blank determination, due to the lack of zerocarbon water (Hedges et al., 1993). In our analyses, blank values were determined using water which had been subjected to HTCO under conditions more rigorous than those used in the actual analysis (Chen and Wangersky, 1993a); if any organic carbon escaped oxidation in the purification process, it would certainly not be detected in the analysis. Using this water as our blank, we have found amounts of organic carbon ranging from 25 to 30 uM in water subjected to various treatments for the removal of dissolved organic matter. Since only the machine blank, and not the carbon contributed by the water 'blank', should be subtracted from the raw data, the use of an improper blank both reduces the amount of DOC found by the HTCO method and increases its variability. The precision of our method for DOC is typically in the range of 1-2 uM of carbon, based on a minimum of three replicate injections, with standard and blank samples interspersed throughout the sample runs. The method is discussed in greater detail in Chen and Wangersky (1993b). Using both HTCO and UV methods, we followed the microbially mediated decay of DOC in a phytoplankton culture of the diatom Chaetoceros gracilis and in a seawater sample from the Northwest Arm, Nova Scotia, Canada (Chen and Wangersky, 1993a). Here, we present further results of our long-term decay experiments with DOC from algal cultures of the diatom Phaeodactylum tricomutum, the flagellate Isochrysis galbana, the dinoflagellate Alexandrium tamarense, and a natural algal assemblage from the Northwest Arm, Nova Scotia, Canada. Recently, there has been an accumulation of evidence showing that bacterial abundance in seawater had been underestimated by an order of magnitude, and that bacterial production is much higher than was believed in the past (Azam and Cho, 1987). Thus, the rate of bacterial utilization of organic matter in the sea might be much higher than was thought. High turnover rates of seawater DOC in blooms (0.363 day 1 ; Kirchman et al., 1991) and diatom cultures (0.50 day 1 ; Chen and Wangersky, 1993a) have been reported. These results suggest the importance of sample preservation for DOC measurement; in a region of high primary productivity, the time involved in sample taking and filtration could cause a considerable loss in DOC Without some method of preservation which stops bacterial decomposition of the more biologically labile materials as soon as possible after sampling, we are really determining an undefined portion of the DOC, related in some unknown fashion to the in situ value (Wangersky, 1993). In order to determine an effective method for the routine preservation of samples, we have tested a number of sample preservation methods. These results will also be presented here. Method The preservation methods for DOC analysis were tested using substrate from a culture of the diatom P.tricornutum in log-phase growth. Aliquots of a 0.8 um 1523 W.Chen and PJ.Wangewfcy filtrate of the culture were preserved by six different methods: (i) and (ii) were both poisoned by the addition of a 2.5% mercuric chloride solution to a final concentration of 0.1 %, acidified by 1 M H Q to a final pH of between 2 and 3, and stored at 2 and 20°C, respectively; (iii) and (iv) were both poisoned with mercuric chloride but not acidified, and stored at 2 and 20°C, respectively; (v) and (vi) were both acidified with HC1, and stored at 2 and 20°C, respectively. This test was conducted for a relatively short term of 35 days. Long-term preservation by acidification with H Q and storage in the cold was tested using samples from a bloom culture of the natural phytoplankton population from the Northwest Arm and seawater from the Bedford Basin, Nova Scotia, Canada. About 250 ml of the samples were 0.8 um filtered, acidified with H Q to a pH between 2 and 3, and stored at 2°C in 300 ml glass bottles. The bottles had previously been combusted at 500°C for 12 h and rinsed with the filtrates three times to reduce possible sorption by the glass surface (Sharp et al., 1993b). The bottles and samples were sealed tightly with caps with Teflon linings. Samples for DOC measurements were taken with a 5 ml pipette to avoid any contact between the substrates and the caps. This test was conducted for 145 days. In all of the above experiments, samples for DOC analysis were taken at short time intervals at the beginning of the experiment, and at longer intervals later. DOC was measured by an HTCO method (Chen and Wangersky, 1993a,b). The organisms used for the decay experiments were grown in batch culture, using the method described elsewhere (Chen and Wangersky, 1993b). When the cultures were brought to the desired growth stage, they were filtered through a 10 um Nuclepore filter and then through a 0.8 um Nuclepore filter cartridge by gravity filtration. About 900 ml of filtrate were mixed with -100 ml of 0.8 um filtered seawater from the Northwest Arm. This dilution ensured that the natural bacterial populations in seawater were also present in the experimental samples. For two of the decay samples from the natural algal assemblages, filtered seawater which had been used to leach sediments was also added, to ensure the presence of the natural bacterial population in the samples, and to examine the effect of bacterial species abundance and activity on the turnover of DOC The mixture was kept in the dark at 20°C and bubbled with organic-free oxygen to prevent it from becoming anoxia The bubbling was kept at the lowest rate possible (~3 ml mirr1) to reduce evaporation. The effect of temperature on the decay rate of DOC was investigated using culture medium in which the diatom Cgracilis had reached the exponential phase of growth. Two aliquots of 21 of a 0.8 urn culture filtrate were kept at 10 and 20°C in the dark. The aliquots were bubbled with 0.22 um filtered compressed air. The flow rate of the air was ~3 ml min"1. Sampling and analysis were carried out in the same manner as in the other experiments. Results and discussion Sample preservation The results of short-term sample preservation methods are shown in Table I. With the exception of samples acidified with H Q and stored at room temperature, all 1524 Rates of degradation of DOC Table L Preservation of DOC samples from a P.tricomutum culture; quantities in micromolar carbon Day 0 1 3 7 14 35 Hgdj + HCl HgOj 20°C 2°C 20°C 2"C 20°C 2°C 128 128 129 128 126 129 128 125 128 127 126 127 128 126 128 129 125 128 128 126 124 126 123 122 128 128 125 129 127 127 , 128 128 125 129 128 130 HC1 the methods tested were satisfactory for DOC preservation for at least 35 days. Acidifying with H O alone and storage at room temperature resulted in a consistent slow decrease of DOC, with - 7 % of the DOC lost after 35 days storage. Since our analytical precision was of the order of 1-2%, we feel this method of preservation for DOC at room temperature, and had been shown previously to be satisfactory for DOC preservation in the cold (2°C) for as long as 87 days (Chen and Wangersky, 1993a). Poisoning with mercuric chloride thus seems to be the most convenient method for short-term preservation of DOC, and poisoning and storage in the cold for long-term preservation. However, since mercuric chloride is a highly toxic substance, it may cause problems in DOC measurement afterwards. It could produce a toxic exhaust gas, harmful to the analyst, or poison the Pt catalyst used in the HTCO system (Bauer et al., 1993). No poisoning effect was observed in our HTCO system when samples treated with mercuric chloride were measured, but the number of samples analysed with this preservative present was relatively small. The results of the long-term preservation studies are shown in Table II. Fluctuations around the starting values were within analytical error and exhibited no consistent trends over the 145 day storage period. DOC samples preserved by this method are stable toward bacterial utilization and physical loss. Therefore, of the methods tested, acidification with HC1 and storage in the cold appears to be the most convenient and practical method for DOC preservation for both short and long periods. Table IL Preservation of DOC (tiM) from a P.tricomutum culture with HO and storage at 2°C Day Surface seawater ~~0 Hi 204 Culture filtrate 7 15 30 62 100 145 115 118 113 115 117 111 212 208 205 204 207 203 1525 W.Chen and RiWangersky Decay experiments The results of the decay experiments are shown in Figures 1-4 and Table III. The data could be described by non-linear equations; however, since the shape of the decay curves was determined both by decay constants and by amounts of each of the fractions of DOC present, particularly of the most labile fraction, the exact equations resulting would depend upon where in the growth and senescence Table m . DOC (mM) from cultures of A.iamarensc grown in medium originally autoclaved or filtered Days Autoclaved Filtered 0 0.09 0.17 0.53 1.0 Z0 4.0 8.5 153 303 57.0 287 275 278 288 287 288 295 293 300 292 288 273 265 260 265 267 263 270 275 287 283 262 C. gradlis 40 60 Days 80 100 •*- Senescent - » • Log phase Fig. L Decay of DOC from cultures of Cgracilis. 200 Fig. 2. Decay of DOC from cultures of P.tricomutum. 1526 120 Rates of degradation of DOC 240 O ;200 160 120 • logPhase • Sene«c«nt Fig. 3. Decay of DOC from cultures of I.galbana. 20 40 60 80 100 120 140 Days -»- Log phase (added filtrate) - • - Log phase (no filtrate) — Senescent (added filtrate) Fig. 4. Decay of DOC from natural algal assemblage. process the sample was taken. Comparison between species, or even between samples drawn at different times from the same culture, would be difficult or misleading. The decay of DOC could also be described by the first-order reaction kinetics of Berner's (1980) multi-G model. In this model, the plot of the log decay curve is divided into straight-line segments. The slope of each line segment is the decay rate for the corresponding DOC fraction, and the size of the carbon pool for that fraction can be calculated. The decay rates and sizes of pools calculated by the multi-G model are shown in Table IV. The decay rates and pool sizes differed with species, physiological state and culture batch. The rates obtained ranged from 0.12 to 0.49 day"1 for the G01 fraction, 0.02 to 0.08 day 1 for the G02 fraction, 7.6 x 10"3 to 0.03 day 1 for the G(o fraction, and 1.0 x 10~3to3.7 x 10~3 for the Go4fraction.The pool sizes varied 1527 W.Ctaen and RXWangersky Table IV. DOC decay rates Substrate Duration (days) DOC pool %of!DOC K Rate (day 1 ) CgracUis log phase 106 13.5 19.2 13.5 5.8 /Cm 0.48 0.07 Hi 36.2 9.9 3.8 01 Go, Go: Go3 Go4 CgracUis senescent 88 Go, G02 64 Go4 Go, Go: Gm Go4 10.5 33 7.2 83 P.tricornutum senescent 60 OOOO S 8 S2 P.tricornutum log phase 8.9 16.0 10.5 6.8 I.galbana log phase 34 Goi 10.2 16.0 I.galbana 27 Go, 3.7 115 Go, 10.8 5.8 13.7 15.5 senescent Natural assemblage log phase, no additive G02 Natural assemblage log phase, added eluate 107 Seawater 135 106 Km Km 0.49 0.08 0.03 1.0 X 13-3 034 0.02 0.01 1.8 x 10-3 0.19 0.03 0.01 Z7 X 10-3 0.03 6.5 x 10-3 Km Km 13 X 10-3 0.12 0.03 7.6 x 10-3 2.9 x 10-3 6.1 17.0 15.1 14.4 Km 037 0.05 0.01 3.1 x lO-3 5.0 15.1 35.6 KQ\ 031 0.05 0.01 3.7 X 10-3 Go, 20.7 6.7 Go, Gnj Go* Natural assemblage senescent, added eluate ^03 8.0 X 10-3 1.0 X 10-3 OOOO S S B2 G£ Km KQQ Km, 4.7 x lO-3 4.7 x lO-3 from 5.0% of the total DOC to 135% for Pool GOi, 3.3 to 36.2% for Pool G^, 7.2 to 35.6% for Pool G03 and 3.8 to 15.5% for Pool G04 The initial high turnover rates decreased rapidly as the DOC was consumed (Figures l-4,Table IV), decreasing by an order of magnitude within hours to days. In the case of CgracUis, the Goi fraction was gone within a few hours, the G02 fraction was present until the third day, the G03fractionuntil the 23rd day and the G04 fraction was still decaying on the 118th day. After a few weeks of decay, the rates decreased to the order of 10"3, two orders of magnitude slower. The decrease in the rate of bacterial degradation may result from the changing nature of the DOM (Wolter, 1982; Chrost and Faust, 1983; Iturriaga and Zsolnay, 1983; Jensen, 1983; Bell, 1984; Brophy and Carlson, 1989). The bacteria consume the compounds in the order of their ease of oxidation, until only the most resistant 1528 Rates or degradation of DOC or nutrient-poor fraction remains. An alternate possibility is that the bacteria require an additional nutrient to metabolize DOM, and that this nutrient becomes limiting as the incubation experiment progresses (Parsons et al., 1980/1981; Kirchman et al., 1990,1991). In either case, this simple decay experiment has given us insight into the cycling of DOM in the upper ocean. The DOC in the cultures of Qgracilis, P.tricomutum and the natural assemblage decayed rapidly during the first day, with decay rates ranging from 0.12 to 0.49 day"1 (see Table IV). The decay rate then slowed down markedly. Most of the labile DOC was degraded within a few days to a few weeks. After that, the DOC decayed at a much slower rate. By the end of the experiment, no further decay was detectable by our HTCO method. The residual DOC was either resistant to bacterial degradation or degradable at a rate too slow to be detected over a period of a few months. No decay was observed for the DOC from the senescent culture of the dinoflagellate A.tamarense (Table HI). While some phytoplankton species are known to release bacteriostatic compounds (Duff et al., 1966; Bruce et al., 1967; Chrost, 1975), bacteria are natural constituents of A.tamarense red tides.The lack of decay in this medium suggests that the bacteria normally associated with these red tides subsist on material coming from sources other than the dinoflagellates. Because autoclaving of the medium sometimes results in precipitation of some components, and thus may affect phytoplankton growth, we ran the experiment with medium originally sterilized either by autoclaving or by filtration. The diatom GgracUis, both in log phase and senescence, showed the highest decay rates and largest pool sizes for the Gm and G02 fractions. This result was consistent with the high percentages of low molecular weight observed for DOM from this species in both log phase and early senescence, 82 and 84%, respectively (Chen and Wangersky, submitted). The DOM from the flagellate I.galbana decays much more slowly than that of the diatom. Compared to the diatom, in fact, no rate for the GOi pool was observed for substrate from the culture in mid-log phase, and a rate for the G04 fraction was obtained only for the substrate from the culture in stationary stage. These results suggest that the DOM released by I.galbana is much less labile to bacterial degradation, and may possess antibacterial properties (Bruce et al., 1967). This suggestion is supported by the result of molecular weight fractionation of the DOM released by this species, which was composed largely of high-molecular-weight material (Chen and Wangersky, submitted). The low values for the decay constants in the seawater sample (see Table IV) suggest that these were in fact K& and K&, the more labile DOM responsible for the KQI and K^ values having already disappeared, probably before the samples were taken. The substrates from these experimental cultures and from the natural algae assemblage at different growth stages decayed with significantly different rates for the GQI fraction, and with almost identical constants for all other fractions.This suggests that the G01 fraction from cultures in log-phase growth is more biolabile than that in senescent stages. The substrates from senescent cultures of diatoms and the natural algal assemblage, whose bloom species were diatoms (Chen and 1529 W.Cben and PJ.Wangersky Wangersky, submitted), exhibited high decay rates.The cultures used were in their early senescent stage, within 3 days after the population crash, and had high DOC values. At that time, a large amount of DOC was released by the senescent cells as a result of autolysis and decomposition, while bacterial populations had not yet had time to increase. A considerable amount of biolabile DOC still remained in these cultures. If substrates had been taken from very old cultures, whose most labile DOC had already been used by bacteria, the cultures should have displayed decay constants as low as those observed for seawater in Table IV. It is significant that the rapid utilization of high-molecular-weight materials observed by Amon and Benner (1994) was with material from a plankton bloom; the smaller molecules, which were used much more slowly, may have been composed of compounds from the ^03 and KM pools. The decay rates observed for the DOC from the two batches of the natural assemblage cultures, both in log phase, differed in KQX, K^ and Km significantly.The substrate with added sediment leaching solution decayed with a KQX three times as high, and with K^ and K^ twice as high as those for the substrate without the added leaching solution. These results suggest that the species, abundance and activity of bacteria are important factors in determining the turnover rate of the DOC The decay constants obtained in these experiments demonstrated that biolabile DOC produced by phytoplankton in cultures could be divided into four fractions, decaying in hours to days, days to weeks, weeks to months and months to years, respectively. This is consistent with results obtained by a 14C tracer method for DOC decay from detrital Skletonema costatum cells (Pett, 1989). The amounts of materials falling into each of the fractions were highly variable with species, ages and bacterial activities in the cultures. The decay rates observed in our experiments might be much higher than natural or in situ rates since most of the grazers of bacteria (e.g. microflagellates) were removed from the decay substrates by 0.8 um filtration. Although the numbers of bacteria in the decay substrates were not measured, thtlack of grazers should lead to higher than natural seawater bacterial abundances, and hence to increased decay rates of DOC. It is obvious that the turnover rates obtained by these experiments are specific to the DOM and organisms existing in the substrates used, and cannot be generalized to natural seawater. The results of the effect of temperature on decay of DOC are shown in Figure 5. The bubbling air used in this experiment was not entirely organic free and hence gave some degree of contamination to the decay substrates. The contamination rate from the compressed air used was monitored using a control sample of Super Q water with added salt: the DOC increased from 12.5 umol C at the beginning to 29.2 umol C by the 60th day. This rate of contamination was relatively minor compared to the decay rate of the DOC in the first 30 days. However, it was significant after that time and became higher than the decay rate of the DOC after -45 days. In spite of the contamination from the bubbling air, the results shown in Figure 5 do demonstrate that the decay of DOC by bacteria, and hence the growth of bacteria, is temperature dependent: it was more rapid at 20°C than at 10°CThis is consistent with the work of Takahashi and Ichimura (1971), who found a similar temperature limitation on glucose uptake in seawater. 1530 ..... a,. Rates of degradation of DOC 30 -»-10C-«-2OC Fig. 5. Temperature effects on the decay of DOC from a culture of Cgracitis. Figure 5 shows that the GOi fraction decayed much more slowly at 10°C At 20°C, 33.3 umol of DOC disappeared within 0.75 days, with a decay rate of 030 day 1 , while it took 4.5 days to remove the same amount of DOC at 10°C. Moreover, at 10°C, it took two steps to decay this fraction of DOC, with decay rates of 0.15 and 0.036 day-1, respectively. 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