RESEARCH ARTICLE Evidence for functional links between the Rgd1-Rho3 RhoGAPGTPase module and Tos2, a protein involved in polarized growth in Saccharomyces cerevisiae Sandra Claret1,2, Olivier Roumanie1,2, Valérie Prouzet-Mauleon1,2, Fabien Lefebvre1,2, Didier Thoraval1,2, Marc Crouzet1,2 & François Doignon1,2 1 RDPR, Institute of Cellular Biochemistry and Genetics, University of Bordeaux 2, Bordeaux, France; and 2CNRS, UMR 5095, Bordeaux, France Correspondence: François Doignon, RDPR, Institute of Cellular Biochemistry and Genetics, University of Bordeaux 2, Box 64, 146 rue Léo Saignat, 33076 Bordeaux Cedex, France. Tel.: 133 5 57 57 47 18; fax: 133 5 57 57 47 19; e-mail: francois.doignon@ u-bordeaux2.fr Received 23 July 2010; revised 20 October 2010; accepted 5 November 2010. Final version published online 8 December 2010. DOI:10.1111/j.1567-1364.2010.00704.x Editor: Ian Dawes Abstract The Rho GTPase-activating protein Rgd1p positively regulates the GTPase activity of Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively, in the budding yeast Saccharomyces cerevisiae. Two-hybrid screening identified Tos2p as a candidate Rgd1p-binding protein. Further analyses confirmed that Tos2p binds to the RhoGAP Rgd1p through its C-terminal region. Both Tos2p and Rgd1p are localized to polarized growth sites during the cell cycle and associated with detergent-resistant membranes. We observed that TOS2 overexpression suppressed rgd1D sensitivity to a low pH. In the tos2D strain, the amount of GTP-bound Rho3p was increased, suggesting an influence of Tos2p on Rgd1p activity in vivo. We also showed a functional interaction between the TOS2 and the RHO3 genes: TOS2 overexpression partially suppressed the growth defect of rho3-V51 cells at a restrictive temperature. We propose that Tos2p, a protein involved in polarized growth and most probably associated with the plasma membrane, modulates the action of Rgd1p and Rho3p in S. cerevisiae. Keywords Saccharomyces cerevisiae; polarized growth; Rho GTPases; Rgd1p; Tos2p. YEAST RESEARCH Introduction The budding yeast Saccharomyces cerevisiae exhibits polarized growth at several stages of its life cycle (Drubin & Nelson, 1996; Pruyne & Bretscher, 2000a). Polarized growth requires coordination between the synthesis of cell growth material and the asymmetrical delivery of cellular components between mother and daughter cells (Pruyne & Bretscher, 2000a, b; Brennwald & Rossi, 2007). Rho GTPases play a role in establishing and maintaining polarized growth during bud and septum formation (Johnson, 1999; Gladfelter et al., 2002; Bretscher, 2003). In the yeast S. cerevisiae, six Rho proteins, Cdc42p and Rho1p-Rho5p, were identified (Garcia-Ranea & Valencia, 1998; Roumanie et al., 2001). These small GTPases cycle between the GTP-bound active and the GDP-bound inactive conformations. The active form interacts with its specific targets and signals to different pathways involved in actin cytoskeleton organization and exocytosis (Tanaka & Takai, 1998; Adamo et al., 1999, 2001). This GDP–GTP cycle is tightly regulated spatiotemporally in cells FEMS Yeast Res 11 (2011) 179–191 by the positive regulators, guanine nucleotide-exchange factors (GEFs), and by the negative regulators, the GTPaseactivating proteins (GAPs). GEFs activate Rho GTPases by promoting the exchange of GDP for GTP (Cerione & Zheng, 1996) and GAPs enhance the intrinsic GTPase activity, leading to the inactive state of the GTPase (Tcherkezian & LamarcheVane, 2007). The dynamic properties of GDP–GTP cycling are important as shown for the Cdc42p GTPase in septin ring assembly and in cell fusion during mating (Gladfelter et al., 2002; Barale et al., 2006). The Rho3p and Rho4p GTPases are thought to be required for the maintenance, but not for the initiation, of polarized cell growth. (Matsui & Toh-e, 1992a, b). Indeed, the combined depletion of Rho3p and Rho4p causes cell death at 30 1C and results in large, round cells with a small bud and a disorganized actin cytoskeleton. The deletion of RHO3 alone also causes severe defects in cell growth. The overexpression of RHO4 suppresses the growth defects of rho3D, suggesting that certain functions of Rho3p and Rho4p may be overlapping (Matsui & Toh-e, 1992b). However, Rho3p and Rho4p 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c 180 S. Claret et al. GTPases appear to play distinct roles in bud extension and bud neck formation, respectively. Indeed, the production of GTP-blocked Rho3p in wild-type yeast results in abnormally elongated cells, whereas yeast cells producing GTP-blocked Rho4p are larger and rounder, with poorly defined bud necks (Fernandes et al., 2006). We showed previously that the Rgd1p protein displays RhoGAP activity for Rho3p and Rho4p GTPases (Doignon et al., 1999). Rgd1p has a molecular organization similar to several members of the F-BAR family (Dawson et al., 2006; Itoh & De Camilli, 2006); indeed, in addition to the C-terminal RhoGAP domain (aa 486–666), Rgd1p possesses an F-BAR domain (aa 1–300) at its N-terminus (ProuzetMauleon et al., 2008). The F-BAR domains, which include a FER/CIP4-homology (FCH) domain, followed by a coiledcoil sequence, are involved in membrane binding and tubulation (Itoh et al., 2005; Tsujita et al., 2006; Shimada et al., 2007). We showed that the F-BAR region of Rgd1p binds phosphoinositides in vitro and also plays a key role in the localization of the RhoGAP to the bud tip and neck during the cell cycle (Prouzet-Mauleon et al., 2008). Increasing evidence indicated that RhoGAPs are regulated by distinct mechanisms and play a role in a number of Rho-mediated signalling pathways (Bos et al., 2007; Tcherkezian & Lamarche-Vane, 2007). Therefore, we searched for partners of the Rgd1 RhoGAP to investigate for potential upstream regulators of the Rho3 and Rho4 GTPases and consequently of polarized growth. Using a two-hybrid screen, we identified a truncated form of Tos2p interacting with Rgd1p. The TOS2 gene belongs to a family of five genes called TOS (Horak & Snyder, 2002) for Target Of SBF (Swi4Swi6 cell cycle box Binding Factor) and it displays a strong cell cycle-dependent expression that peaks in G1 (Spellman et al., 1998). The Tos2 protein localizes to the bud tip and bud neck and is a component of a cell polarity protein interaction map (Drees et al., 2001; Sundin et al., 2004). Additionally, the Tos2 protein, which may act as a membrane anchor, is involved in the localization of Cdc24p, the GEF for Cdc42p, to the bud growth site (Toenjes et al., 2004). More recently, the TOS2 gene was found to be a highcopy suppressor of a temperature-sensitive strain carrying mutations in GIC1 and GIC2, which encode two effectors of the Cdc42p GTPase (Gandhi et al., 2006). In this study, we addressed the functional links between the Rgd1p RhoGAP and its binding partner Tos2p. Our analysis revealed a functional relationship between the protein Tos2 and the module Rgd1-Rho3. Materials and methods Yeast strains and growth conditions All basic and genetic yeast manipulations were carried out according to Guthrie & Fink (1991). The genotypes of yeast strains used are listed in Table 1. Yeast strains were grown at 30 1C in standard yeast extract peptone dextrose medium or synthetic dextrose (SD) minimal medium supplemented with appropriate amino acids. Acidic shock was performed by adding hydrochloric acid until the pH of the liquid medium was 2.8 (Gatti et al., 2005). Cell death was determined by methylene blue staining (de Bettignies et al., 2001). Yeast transformations were performed as described previously (Gietz et al., 1995). Plasmids The TOS2 gene was inserted into the low-copy vectors pUG35 with the URA3 marker and pUG23 with the HIS3 marker (Niedenthal et al., 1996); the TOS2 coding sequence Table 1. Saccharomyces cerevisiae strains Name Genotype Source FY1679a BY4742 rgd1D tos2D rgd1D tos2D tos2D rgd1D rho3-1 rho4D rho3D rho4D rho3-V51 BY647 BY646 HY (HF7c Y187) MATa, ura3-52, trp1D63, leu2D1 MATa, his3D1, leu2D0, lys2D0, ura3D0 BY4742; rgd1<kanMX4 BY4742; tos2<kanMX4 MATa, ura-52, his3 11,15 rgd1<HIS3 MATa, ura3-52, trp1D63, his3D200, tos2<kanMX4 MATa, ura3-52, trp1D63, his3 11,15 rgd1<HIS3, tos2<kanMX4 MATa, ura3-52, leu2-3,112, trp1, his3, rho3-1<TRP1, rho4<HIS3 MATa, ura3-52, trp1D63, rho3<kanMX4 MATa, ura3-52, leu2D1, trp1D63, rho4<kanMX4 MATa, his3D200, rho3<LEU2, RHO3-V51 MATa, CDC42, ura3-52 MATa, cdc42-6, ura3-52 MATa/MATa, ura3-52/ura3-52, his3-D200/his3-D200, ade2-101/ade2-101, trp1-901/trp1-901, leu2-3,112/leu2-3,112, gal4-542/gal4-542, gal80-538/gal80-538, lys2<GAL1-HIS3/LYS2, URA3<(GAL4 17-mers)3-CYC1-lacZ/URA3<GAL1-lacZ EUROFAN EUROSCARF EUROSCARF EUROSCARF Our lab D. Gallwitz Our lab Y. Matsui Our lab Our lab P. Brennwald P. Brennwald P. Brennwald Louvet et al. (1997) 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c FEMS Yeast Res 11 (2011) 179–191 181 Tos2p a functional partner of the Rgd1-Rho3 module C-terminus was fused to the yEGFP. The TOS2–GFP fusion gene in pUG35-TOS2 and pUG23-TOS2 plasmids was under the control of the MET25 promoter. TOS2 expression from the MET25 promoter was repressed by adding 2 mM methionine in the medium. Plasmids pUHA35 and pUHA36 were constructed by replacing the green fluorescent protein (GFP) sequence of pUG35 and pUG36 (Niedenthal et al., 1996) by a sequence encoding the 3HA epitope. The pUHA35 and pUHA36 vectors allow 3HA tagging at the C-terminal and N-terminal ends of the protein, respectively. The TOS2 coding sequence was inserted into the pUHA35 to yield pUHA35-TOS2. Similarly, the wild-type and constitutively activated (Q74L) forms of Rho3p (Roumanie et al., 2000) were tagged with 3HA at the N-terminus by inserting the coding sequences into the pUHA36 vector. The Rgd1p localization was followed by the use of the RGD1-3xGFP construct (Prouzet-Mauleon et al., 2008) integrated into the RGD1 locus of appropriate strains. reported previously (Doignon et al., 1999). The pODB80 plasmids encoding the DNA-binding domain fused to the inactivated (GDP-bound) of Rho3p (T30N) and Rho4p (T86N) forms or to wild-type forms were constructed after PCR amplification corresponding to RHO3 and RHO4 sequences cloned in the pCM185 plasmid (Roumanie et al., 2000). The two-hybrid interactions were analysed both by monitoring growth on selective medium and b-galactosidase activity. Yeast strains containing plasmid combinations that expressed only the different forms of Rgd1p or Tos2p fused with the different domains of Gal4p did not grow on selective medium or express b-galactosidase activity. c-Fos and c-Jun, two proteins known to interact strongly, were used as a standard positive control in the yeast two-hybrid protein–protein interaction assay by introducing the plasmids pPC76 (Fos-DB) and pPC79 (Jun-AD) (Chevray & Nathans, 1992) into the HY strain. In vitro protein-binding assays Yeast two-hybrid assays The RGD1 coding sequence (aa 1–666) fused to the Gal4p DNA-binding domain of pODB80 (TRP1 marker) was used as a bait and introduced into the yeast HY diploid strain (Louvet et al., 1997). The resulting strain was transformed with a yeast DNA library fused to the Gal4 activation domain (Clontech). The library was estimated to contain 6 106 independent clones with an insert size of 1.1 kb. Transformed HY cells were plated onto synthetic medium without leucine, tryptophan and histidine to allow the detection of clones that trigger the activation of reporter genes. A stringent response was elicited by adding 3 mM 3-amino 1,2,3-triazole; His1 clones were scored after replating on selective medium. Further confirmation of the interaction was obtained by measuring the expression of the second reporter gene, lacZ, in yeast strains (Louvet et al., 1997). Interactions between different forms of the RGD1 and TOS2 genes were tested using the pODB80 and the pACT2 (LEU2 marker) plasmids carrying the Gal4p activation domain (Clontech). The entire ORF of TOS2 (aa 1–622) and sequences corresponding to the TOS2D TM sequence (aa 62–622) and C-TOS2 (aa 410–622) identified in the twohybrid screen were amplified by PCR from genomic DNA and inserted in-frame into the activation domain (AD) of pACT2. Likewise, the RGD1 sequences encoding truncated forms containing the FCH and coiled coil (aa 1–183), the coiled coil and the GAP (aa 141–666) and the GAP (aa 483–666) regions were PCR amplified and fused to the DB domain in pODB80. DNA encoding the entire coding sequence (aa 1–734) and the C-ter (aa 522–734) of SKG6 was also PCR-amplified and inserted into both pODB80 and pACT2 plasmids. The production of activated forms of Rho3 (Q74L) and Rho4 (Q131L) using pODB80 has been FEMS Yeast Res 11 (2011) 179–191 The GST-Rgd1 and GST proteins used for in vitro binding reactions were produced in yeast S. cerevisiae using a galactose-inducible expression system and proteins were purified with glutathione-Sepharose beads essentially as described previously (Roumanie et al., 2001). The yield of GST-Rgd1 and GST proteins was estimated by Coomassie blue staining after separation by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) and by Western blotting with anti-Rgd1 antibodies. The GSTRgd1p was estimated to 4 90% of the total protein amount in the pull-down extract. The protein concentration was determined by comparing the intensities of bands with calibrated molecular weight standards (GE healthcare). The region encoding amino acids 410–622 of Tos2p was PCR-amplified from yeast genomic DNA and inserted into the pIVEX2.3-MCS vector (Roche). The resulting plasmid was used in coupled in vitro transcription–translation reactions using the RTS 100 E. coli HY kit (Roche) in the presence of [35S] methionine, following the manufacturer’s instructions. For the binding assay, 5 mL of the [35S] methionine-labelled reaction mixture containing the radioactive C-Tos2p diluted in 85 mL binding buffer (10 mM HEPES pH 7.4, 140 mM KCl, 2 mM MgCl2, 1% Triton X-100) was preincubated with 30 mL glutathione-Sepharose beads for 30 min on ice, followed by centrifugation at 10 000 g for 2 min. The supernatant was then used in a 100 mL binding reaction containing 1 mM of GST or GSTRgd1 proteins immobilized on glutathione–Sepharose beads (15 mL). The reaction was incubated for 2 h at 4 1C with slight agitation and centrifuged at 10 000 g for 2 min. The supernatant (80 mL) was boiled in sample buffer; the pellet was washed five times with 400 mL binding buffer to remove nonspecific interacting proteins before boiling in sample 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c 182 buffer. Equal volumes of samples were subjected to SDSPAGE, stained with coomassie blue, dried and exposed to an imaging screen on an FLA-5100 (Fujifilm). Fractionation and membrane extraction of proteins Experiments were carried out using the protocols as described previously (Lodder et al., 1999; Toenjes et al., 2004). The BY4742 strain, the BY4742 strain transformed with pUHA-TOS2 and expressing Tos2-3HA, and the FY1679 strain transformed with YEp352-WSC13HA (Rajavel et al., 1999) and expressing Wsc1-3HA (Fernandes et al., 2006), were grown in minimal medium to the mid-log phase (0.5 OD600 nm). Cells (25 U OD600 nm) were harvested, washed once with cold water and lysed in lysis buffer [0.8 M sorbitol, 50 mM Tris HCl pH 7.6, 1 mM EDTA, 1 mM phenylmethylsulphonyl fluoride supplemented with a protease inhibitor cocktail (Sigma)] with glass beads using a Mini-beadbeater (Biospec Products) at 4 1C. Cell lysates were clarified by spinning at 500 g for 5 min at 4 1C. The supernatants were centrifuged at 13 000 g for 10 min at 4 1C to yield supernatant (S13) and pellet (P13) fractions. P13 was resuspended in a volume equal to that of the supernatant. Equal volumes of supernatant and pellet fractions were separated on 8% SDS-PAGE and immunoblotted with anti-HA (12CA5) or anti-Rgd1 antibodies. For membrane extraction experiments, the lysate obtained after clearing at 500 g was divided into several aliquots. Aliquots were incubated at 4 1C for 15 min with 1 M NaCl, 1% Triton X-100, 1 M urea or a mixture of 1% Triton X-100 and 1 M urea in a final volume of 500 mL of lysis buffer. As a control, one aliquot was incubated without adding any extracting reagent. Lysates were then spun at 13 000 g for 10 min at 4 1C. P13 was resuspended in lysis buffer and S13 and P13 were separated on polyacrylamide gels and immunoblotted. The intensity of bands on a Western blot was evaluated by densitometry analysis. Pull-down assay for GTP-bound Rho3p The amount of GTP-bound Rho3p was analysed in vivo using the Rho pull-down assay (Ren et al., 1999) and developed in the yeast Schizosaccharomyces pombe by Calonge et al. (2003). It is based on the ability of the Rhobinding domain (RBD) from the effector protein Rhotekin to bind human Rho proteins (Ren et al., 1999). The wildtype, rgd1D and tos2D strains were transformed with the plasmid pUHA36-RHO3 expressing the wild-type 3HARho3p; the wild-type strain was also transformed with the plasmid pUHA36-GTP-RHO3 expressing constitutively activated Rho3p. The TOS2-3HA construct from the appropriate plasmid was also expressed in the wild-type strain carrying the pUHA36-RHO3. For this purpose, the URA3 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c S. Claret et al. marker of pUHA35-TOS2 was replaced by the HIS3 marker from pUG34 (Niedenthal et al., 1996). Transformants were selected on SD medium for uracil and/or histidine prototrophy. Cells were grown in the absence of methionine for the production of different tagged proteins and collected at 0.6 OD600 nm. Lysates were obtained by breaking cells with glass beads at 4 1C. The protein concentration of lysates was determined using the Bradford assay, the samples were adjusted to the same concentration and for each sample a total of 500 mg protein was used in the pull-down assay. GTP-bound Rho3p was pulled down from the cell extract by binding to GST-C21RBD (rhotekin RBD), previously obtained and purified from Escherichia coli (Reid et al., 1996). One fifth of Rho3 retained on GST-RBD beads was loaded on a polyacrylamide gel. The total amount of Rho3p in different strains was determined by loading equal quantities of protein (2.5 mg per lane) from yeast lysates on the gel. AntiHA 12CA5 monoclonal antibodies were used for Western blot analysis. Determination of the amounts of pulled-down GTPbound and total Rho3p levels in each condition were based on band intensity quantification. Densitometric analysis was performed from nonsaturated films. Results Identification of Tos2p as an Rgd1p physical partner Using a two-hybrid approach, a yeast genomic DNA library for proteins interacting with full-length Rgd1p was screened. We identified one clone that displayed a specific interaction. Using a positive control in a two-hybrid interaction based on c-Fos and c-Jun, two proteins known to interact strongly, this interaction was estimated at third of the control. Sequence analysis revealed that it encoded the carboxyterminal 213 amino acids of the protein Tos2. In silico analysis of full-length Tos2p revealed a single transmembrane domain in the amino-terminal part of the protein (aa 37–62) and a potential PEST sequence (aa 295–328; score 6.05 with ePESTfind program – http://www.expasy.org/ tools/; threshold of 5.0) (Fig. 1a). To determine whether these sequences affected the binding efficiency of Tos2p to Rgd1p, we performed two-hybrid analysis using full-length and truncated forms of Tos2p (Fig. 1b). We observed that the strength of interaction was not modified in the presence of the transmembrane domain or of the PEST motif. The region between amino acids 410 and 622 was sufficient for interaction with Rgd1p. We reported (Roumanie et al., 2000) that the Rgd1 protein comprises an N-terminal FCH domain (aa 33–144), followed by a coiled-coil motif (aa 139–172), both belonging to an F-BAR domain (ProuzetMauleon et al., 2008) and a RhoGAP domain at the carboxyterminal end (aa 486–666). We then determined the Rgd1p FEMS Yeast Res 11 (2011) 179–191 183 Tos2p a functional partner of the Rgd1-Rho3 module Fig. 1. The C-terminal region of the Tos2 protein interacts with the Rgd1p RhoGAP. (a) Schematic representation of Tos2 protein domains. Transmembrane (TM) and PEST motifs were identified using the TMpred and ePESTfind algorithms. Numbers indicate amino acid positions. (b) Twohybrid interactions between Rgd1p and Tos2p. Yeast two-hybrid assays were carried out as described in Materials and methods. HY diploid cells containing various combinations of the Gal4 DNA-binding domain and Gal4-activating domain fusions were tested for the transcriptional activation of the HIS3 reporter gene onto SD minus tryptophan, leucine and histidine (SD–TLH) containing 3-amino-1,2,3-triazole (3 mM). Plates were shown after 2 days of incubation at 30 1C. b-Galactosidase activity was indicated as nanomoles of cleaved O-nitrophenyl-b-D-galactopyranoside per minute and per milligram of yeast total proteins. , no interaction; 1, significant interaction. (c) Interaction of in vitro translated carboxy-terminal region of Tos2p (C-Tos2) with Rgd1p. C-Tos2p was produced and radiolabelled by coupled in vitro transcription–translation. Reaction products were incubated with 1 mM of immobilized GST or GST-Rgd1 fusion protein and washed. Bound and unbound C-Tos2p was separated by SDS-PAGE and analysed by autoradiography. The band corresponding to the C-Tos2 translation product is indicated by an arrow and the percentage of protein product bound to GST-Rgd1 is determined by comparison with the total C-Tos2 amount. The lower band indicated by an asterisk presumably represents a breakdown product. domain able to bind Tos2p in a two-hybrid assay testing different regions of Rgd1p with C-Tos2p, the carboxyterminal region of Tos2p encompassing residues 410–622. We found that the FCH and coiled-coil domains were not necessary for interaction (Fig. 1c). In fact, a truncated form FEMS Yeast Res 11 (2011) 179–191 of Rgd1p (aa 483–666) containing only the GAP domain was found to be sufficient for binding C-Tos2p (Fig. 1c). Tos2p is similar to Skg6p (Tomishige et al., 2005), with an overall 35% identity. C-Tos2p, in particular, is closely related to the Skg6p carboxy-terminal region (aa 522–734), with a 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c 184 higher identity score of 52%. We tested the ability of the Rgd1p RhoGAP domain to interact with the Skg6 fulllength protein or its C-terminal region (aa 522–734) using two-hybrid assays. No interaction was detected with either of the two forms of Skg6p tested. Tos2p interacts with the GAP domain of Rgd1p, the GAP for the Rho3p and Rho4p GTPases; thus, we tested whether Tos2p also interacted with Rho3p or Rho4p. We did not observe any interaction whatever the GTPase form used, i.e. wild-type, activated or inactivated forms. Thus, the two-hybrid interaction of Tos2p is restricted to the Rgd1 RhoGAP domain. To support our results, we produced C-Tos2p (aa 410–622) – identified above as sufficient to interact with Rgd1p – in vitro. We tested the ability of this construct to bind the GST-Rgd1p fusion protein produced in yeast and immobilized on beads. We found that C-Tos2p specifically associated with GST-Rgd1p and not with GST alone (Fig. 1d). Altogether, these results show that the Tos2 protein through its carboxy-terminal region is a physical partner of Rgd1p and two-hybrid assays provide evidence that this interaction might be mediated by the RhoGAP domain of Rgd1p. Both Tos2p and Rgd1p fractionate in detergentresistant membranes (DRMs) Toenjes et al. (2004) reported that Tos2p may help anchor Cdc24p, the GEF for Cdc42p, to sites of polarized growth. Thus, we examined whether Tos2p was associated with Rgd1p in vivo and influenced the Rgd1p localization. In silico analysis of Tos2p predicted one transmembrane domain. We confirmed that Tos2p was an intrinsic membrane protein. The Tos2p protein tagged with 3HA at its carboxy-terminus was produced from the low-copy plasmid pUHA35. Its fractionation was analysed after a centrifugation at 13 000 g for 10 min. Tos2p was recovered in the pellet (P13) and a large smear (Fig. 2) ranging from 85 to 4 130 kDa was observed instead of a band corresponding to the predicted molecular mass (73 288 Da), suggesting the existence of multiple post-translational modifications. This indicated that Tos2-3HA was associated with large membrane structures. The solubility of Tos2-3HA was examined by incubating cell extracts with various chemicals (Fig. 2). The tagged protein was resistant to solubilization after treatment with 1 M NaCl, 1% Triton X-100, 1 M urea and with a mixture of Triton X-100 and urea, followed by spinning at 13 000 g. Control experiments using the single transmembrane Wsc1p-3HA protein (Fig. 2) showed partial solubilization with triton X-100 and total solubilization with the mixture of triton X-100 and urea (Fig. 2), as reported previously (Lodder et al., 1999). Our results suggest that Tos2p is associated with DRMs (Bagnat et al., 2000; Wachtler & Balasubramanian, 2006). As Rgd1p possesses an F-BAR domain at its N-terminus, a domain described as 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c S. Claret et al. Fig. 2. Tos2p and Rgd1p are distributed in DRM fractions. Cell lysates were prepared from reference cells (BY4742) and from cells expressing Tos2-3HA or Wsc1-3HA grown at 30 1C at OD600 nm of 0.5 in minimal medium. The supernatants obtained after a 5-min centrifugation at 500 g were centrifuged at 13 000 g for 10 min. The supernatant (S) and pellet (P) were separated on an 8% polyacrylamide gel and immunoblotted with anti-HA or with anti-Rgd1p antibodies. The supernatant collected after the 500 g centrifugation was incubated for 15 min at 4 1C with the indicated compounds before centrifugation at 13 000 g. involved in membrane binding and tubulation (Itoh et al., 2005; Tsujita et al., 2006; Shimada et al., 2007), we also examined the fractionation of Rgd1p in the supernatant and the pellet after centrifugation. The RhoGAP sedimented at 13 000 g, in agreement with the presence of an F-BAR; treatment with the same chemicals used for Tos2p did not modify the fractionation of the RhoGAP (Fig. 2). Although surprising for a protein without a transmembrane domain, these findings suggest that Rgd1p was also associated with DRMs like its partner Tos2p and that both proteins are located in the same cellular compartment. These fractionation studies are consistent with previous studies showing that both Tos2p and Rgd1p localize to sites of polarized growth (Drees et al., 2001; Prouzet-Mauleon et al., 2008). As shown previously for Cdc24p (Toenjes et al., 2004), we hypothesized that Tos2p may affect Rgd1p anchoring at membrane structures. Thus, we examined the fractionation of the RhoGAP in tos2D and in wild-type cells overexpressing TOS2. We observed in both genetic backgrounds that Rgd1p was recovered in P13 similar to what happens in the wild type (data not shown). To further address the role of Tos2p in the interaction with the RhoGAP Rgd1p, we investigated the effect of TOS2 inactivation and overexpression on the subcellular distribution of Rgd1p. Rgd1-3GFP was localized to polarized growth sites in tos2D mutant as in wild-type cells overexpressing TOS2; the distribution of Rgd1p at the bud and the neck and other localization in both strains (Supporting Information, Fig. S1) were similar to that already reported (Prouzet-Mauleon et al., 2008). However, when TOS2 was overexpressed, nearly half the cells presented an elongated bud. Nevertheless, the distribution of Rgd1p between the bud tip and the bud neck in cells FEMS Yeast Res 11 (2011) 179–191 185 Tos2p a functional partner of the Rgd1-Rho3 module showing an elongated bud was not significantly different from wild-type cells. In the cells with an elongated bud, the fluorescence associated with Rgd1p-3GFP appeared to be restricted to the tip of the growing bud (Fig. S1). Although Tos2p and Rgd1p could locate in the same cellular compartment, the latter results indicated that the Rgd1p/Tos2p interaction was not necessary for the Rgd1p localization and distribution in yeast. The level of activated Rho3p is regulated by Tos2p The two-hybrid interaction of a Tos2p region with the RhoGAP domain of Rgd1p suggested that Tos2p acts through Rgd1p to activate GTP hydrolysis by the Rho3p and Rho4p GTPases. Thus, we tested Rgd1p RhoGAP activity in the presence and absence of Tos2p. The addition of full-length Tos2p or C-Tos2p (aa 410–622) to an in vitro RhoGAP activity assay for Rgd1p (Doignon et al., 1999) did not affect the quantity of GTP hydrolysed by Rho3p or Rho4p (data not shown). To examine the effect of Tos2p in vivo, we analysed the amount of activated GTPases in S. cerevisiae tos2D mutant and in wild-type cells overexpressing TOS2. We used the Rho-GTP pull-down assay developed by Ren et al. (1999) and previously applied to fission yeast S. pombe (Calonge et al., 2003). The RBD from human Rhotekin fused to a GST tag was used for affinity precipitation of cellular GTP-Rho3 and GTP-Rho4 proteins. However, under our experimental conditions, this approach was only successful with Rho3p. The Rho3p GTPase was tagged at its N-terminus with the 3HA epitope. The amount of Rho3 protein from the extracts was determined by Western blotting using the anti-HA 12CA5 monoclonal antibody. GTP-bound Rho3 proteins were pulled down from the extracts with GST-C21RBD, carrying the rhotekin-binding domain (Fig. 3a). A wild-type strain expressing the constitutively GTP-bound or the wild-type 3HA-Rho3 form was used to validate this GST-pull-down assay. GST-RBD beads retained substantial amounts of the GTP-bound Rho3p from lysates of cells expressing the constitutively GTPbound 3HA-Rho3 form, but only a small fraction of the total wild-type 3HA-tagged Rho3p (Fig. 3a); Rho3 proteins were not precipitated with the GST domain alone. We repeated this experiment using the rgd1D strain producing wild-type tagged Rho3p. The proportion of Rho3p obtained from rgd1D lysates was higher than that obtained from wildtype lysates, consistent with Rgd1p GAP activity in these cells (Fig. 3a). These findings demonstrated that the GSTRBD bait could be used to evaluate the proportion of active GTP-bound Rho3p in S. cerevisiae. We then determined the effect of TOS2 inactivation and overexpression on the amount of active Rho3p in vivo. The amount of GTP-bound Rho3p detected in the TOS2-overFEMS Yeast Res 11 (2011) 179–191 Fig. 3. Inactivation of TOS2 increases the amount of active Rho3p. (a) WT cells (BY4742) overexpressing Tos2-3HA or not and the rgd1D and tos2D mutant cells in the BY background were transformed by the vector pUHA36-RHO3 or pUHA36-GTP-RHO3. The plasmids pUHA36-RHO3 and pUHA36-GTP-RHO3- allow the production of either the wild-type (HA-Rho3) or constitutively GTP-bound Rho3 (HA-GTP-Rho3) tagged with 3HA. GTP-bound Rho3p was pulled down from cell extracts with GST-C21RBD and detected using the 12CA5 antibodies, as described in Materials and methods. GTP-bound Rho3p (lanes 1) and total HA-Rho3p (lanes 2) were revealed by a Western blot. The presence (1) or absence ( ) of vectors expressing the proteins is indicated on the left-hand side. (b) Quantitative analysis of GTP-bound Rho3p in the different strains after the pull-down assays. Bands were scanned and the corresponding protein levels were evaluated. The amount of pulled-down GTP-Rho3p relative to the total Rho3p levels was determined for each strain and the ratios were expressed as folds vs. the control from wild type (WT). Data are mean SD from three independent experiments. expressing strain was similar to that observed in wild-type cells. By contrast, TOS2 inactivation led to increased amounts of GTP-bound Rho3p, with the signal intensity higher than that observed in the reference strain (Fig. 3a). The amounts of pulled-down GTP-bound relative to the total Rho3p levels under each condition were determined on band intensity quantification from three independent experiments and the ratios were expressed as folds vs. the WT control (Fig. 3b). This analysis highlighted the effect of Tos2p absence on the abundance of the active Rho3p in yeast cells. When TOS2 was overexpressed, the quantification was equivalent to that observed for the wild type. Altogether, these data show that Tos2p participates in the in vivo modulation of Rho3p activation. Functional relationship between TOS2 and RGD1 To investigate the functional significance of the physical interaction between Rgd1p and Tos2p and to know whether 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c 186 S. Claret et al. vector lowered the rgd1 sensitivity to low pH (Fig. 4). The same effect was observed with pRS426-TOS2, a high-copy vector in which the TOS2 gene was not modified and under the control of its own promoter (data not shown). This response indicated that the TOS2 gene partially suppressed the RGD1 inactivation. This suppression, observed in the absence of Rgd1p, demonstrated that TOS2 must act on alternative pathways to suppress the rgd1D sensitivity to low pH through mechanisms that do not involve the interaction between Tos2p and the RhoGAP. Functional relationship between TOS2 and RHO3 Fig. 4. Cell death in wild-type and rgd1D cells overexpressing TOS2 after a shift to a low pH. Wild-type (FY1679a) and rgd1D cells transformed with the vector pUG35 with or without the TOS2 gene were grown at 30 1C to an OD600 nm of 0.5 in minimal medium. pH was decreased from 3.6 to 2.8. Cell lethality was determined 6 h after the acid shock. Results were obtained from three independent experiments; the bar indicates the SDs. these proteins act in common pathways, we first examined the effects of TOS2 deletion or overexpression in wild-type cells and compared these phenotypes with the rgd1D mutant phenotype. RGD1 inactivation leads to sensitivity to low pH; mortality of exponentially growing rgd1D cells reaches 50% 6 h after an acidic shock (Gatti et al., 2005). Cells inactivated for TOS2 had a normal size and morphology, as reported previously (Gandhi et al., 2006), and their viability was not affected by growing the mutant cells at a low pH. Concerning wild-type cells overexpressing TOS2, they exhibit normal growth and viability under standard growth conditions; however, as mentioned above for cells containing the pUHA35-TOS2 vector, overexpression from the pUG35-TOS2 vector also resulted in cell morphology alterations. Induction of TOS2 expression from the MET25 promoter in a low-copy plasmid led to elongated buds as described previously (Gandhi et al., 2006). Our findings showed the involvement of TOS2 in polarized growth and in controlling the timing of apical and isotropic growth as proposed by Gandhi et al. (2006). Cells overexpressing TOS2 from the MET25 promoter were slightly sensitive to a low pH; a shift to acidic pH induced cell death in about 18% of growing cells (Fig. 4). To carry on the study on the links between Rgd1p and Tos2p, the effects of TOS2 overexpression or inactivation were also analysed in the rgd1D genetic background. The deletion of TOS2 in the rgd1D strain did not change the rgd1 mutant sensitivity to low-pH shock (data not shown). On the contrary, the overexpression of TOS2 from the pUG35 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c Pull-down experiments revealed the effect of Tos2p absence on the abundance of the active Rho3p in yeast cells. Therefore, we also analysed the functional relationships between TOS2 and the genes encoding the Rho3 and Rho4 GTPases regulated by Rgd1. Initially, we overexpressed the TOS2 gene in the temperature-sensitive rho3-1 rho4D strain; rho3-1 rho4D cells did not grow at 37 1C (Imai et al., 1996). The TOS2 overexpressing cells as well as the control grew normally at 25 1C, but did not grow at 37 1C. However, we observed that overexpression of TOS2 reproducibly enhanced the Ts growth phenotype with the absence of growth at 35 1C (Fig. 5), indicating a negative effect of TOS2 overexpression in this strain. This effect may be linked to a lack of function of Rho3p, Rho4p or both GTPases. Thus, the effect of TOS2 overexpression was examined in the single mutants (Fig. 5). We used the strains deleted for RHO3 and RHO4; the rho3D has a nearly normal vegetative growth in a medium without an osmotic stabilizer. The rho3D and rho4D strains were transformed with the pUG35-TOS2. We observed that the overexpression of TOS2 was detrimental to the growth of rho3D. This effect was eliminated by repressing the MET25 promoter controlling TOS2 expression by adding methionine in the medium. No growth difference was detected in the rho4D background when TOS2 expression was induced. These results suggest that the negative effect observed in the rho3-1 rho4D double mutant was linked to Rho3 function. Rho3 acts as a regulator of cell polarity and exocytosis, coordinating several distinct events for the delivery of proteins to specific sites on the cell surface. The rho3-V51 allele exhibited a well-polarized actin cytoskeleton, but showed a severe defect in secretion after a shift to the restrictive temperature (Adamo et al., 1999). rho3-V51 cells grown at 14 1C show a cold-sensitive defect in the delivery of vesicles from mother to bud. Whereas the rho3-V51 strain transformed with the control vector did not grow at 14 1C, the same strain overexpressing TOS2 had a growth partially restored (Fig. 5). These strains presented a similar growth at the permissive temperature (25 1C). Thus, the overexpression of TOS2 can suppress the growth defect due to the rho3-V51 mutation. The cdc42-6 allele also revealed a role FEMS Yeast Res 11 (2011) 179–191 187 Tos2p a functional partner of the Rgd1-Rho3 module for Cdc42 in docking and fusion of secretory vesicles that was independent of its major functions in cell polarity (Adamo et al., 2001; Roumanie et al., 2005). Similar to what was observed for the rho3-V51 mutant, cdc42-6 cells have a severe exocytic defect, but show normal localization of markers for polarized exocytosis (Roumanie et al., 2005). In addition, the thermosensitive rho3-V51 and cdc42-6 mutations are suppressed by a same set of genes (Adamo et al., 2001). Therefore, we also tested TOS2 overexpression in the cdc42-6 strain (Fig. 5). cdc42-6 cells did not grow at 33 and 37 1C (Roumanie et al., 2005). TOS2 overexpression did not restore cdc42-6 growth at the restrictive temperature, but we observed a strongly reduced growth at 25 1C. This negative effect was not observed in the CDC42 background and was dosage dependent (data not shown). Thus, the TOS2 gene is not a suppressor of the cdc42-6 mutation and the suppression effect is restricted to the rho3-51 mutation. TOS2 might compensate a specific function associated with the Rho3 GTPase. Discussion Fig. 5. Effect of TOS2 overexpression in RHO3, RHO4 and CDC42 mutated backgrounds. The rho3-1 rho4D double mutant and the rho3D and rho4D single mutants were transformed with the control vector pUG35 ( ) and with pUG35-TOS2 (1TOS2). Serial dilutions were spotted onto SD medium minus uracil. rho3-1 rho4D cells were incubated at the permissive temperature (25 1C), at the nonpermissive temperature (37 1C) and at 35 1C; rho3D and rho4D cells were incubated at 25 1C under the inducing ( methionine) or the repressing (1methionine) conditions for TOS2 expression. rho3-1 rho4D and rho4D strains were grown for 2 days and rho3D for 4 days. rho3-V51 cells were transformed with the control vector pUG23 ( ) and with pUG23-TOS2 (1TOS2) and spotted onto SD medium minus histidine. rho3-V51 cells were grown at 25 1C for 3 days and at the restrictive temperature (14 1C) for 5 days. The cdc42-6 mutant and the CDC42 control strains were transformed with pUG35 ( ) and pUG35-TOS2 (1TOS2). Transformed cells were spotted onto SD medium minus uracil and grown for 2 days at 25 and 33 1C (restrictive temperature for the cdc42-6 mutation). FEMS Yeast Res 11 (2011) 179–191 We reported previously that Rgd1p is functionally linked to Las17p/Vrp1p, the yeast homologues of human WASP and WIP (Roumanie et al., 2000) as well as components of the protein kinase C (PKC) pathway, which control cell wall integrity in S. cerevisiae (de Bettignies et al., 1999, 2001). To gain an insight into Rgd1p function, we screened for physical partners in a two-hybrid screening assay. Tos2p was identified as a candidate Rgd1p-binding protein. Further analyses confirmed that Tos2p directly binds to Rgd1p through its C-terminal region and two-hybrid studies allowed us to speculate that the RhoGAP domain of Rgd1p is involved in this interaction. Consistent with this interaction, the Tos2p protein localizes to sites of cell growth including the nascent bud site, bud tip and bud neck (Drees et al., 2001; Sundin et al., 2004), overlapping with the localization of Rgd1p (Prouzet-Mauleon et al., 2008). To confirm the interaction between Tos2p and Rgd1p, we explored the characteristics of these proteins as well as their functions in a yeast cell. Based on our fractionation results, Tos2p is an integral membrane protein and, given its cellular localization and effect on the GEF Cdc24p (Toenjes et al., 2004), Tos2p must be inserted into the yeast plasma membrane. Following the treatment of cell membranes with Triton X-100, Tos2p was recovered after centrifugation in the nonsolubilized residue, indicating that it is associated with DRMs. Surprisingly, for a protein without transmembrane domain, the fractionation and solubilization of Rgd1p RhoGAP yielded results similar to those obtained for Tos2p, indicating that Rgd1 is also associated with DRMs. A large majority of yeast plasma membrane proteins studied for their potential association with rafts have been found in 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c 188 DRMs (Malinska et al., 2004); however, DRMs do not simply equate to lipid rafts in their native state (Wachtler & Balasubramanian, 2006). For instance, it was reported that the TOR kinases, TORC1 and TORC2 in yeast fractionate with a novel form of detergent-resistant-associated membranes (Aronova et al., 2007). A significant number of proteins identified within TOR-DRM correspond to proteins implicated in processes related to actin polymerization and/or endocytosis. Preliminary experiments using an iodixanol gradient indicate that Rgd1p associated with DRMs that are distinct from Pma1p-containing plasma membrane rafts. These fractionation properties are due to the F-BAR domain. Recently, in membrane flotation experiments in an Optitrep gradient, the F-BAR protein Cdc15 from S. pombe was also described to be located between the bottom of the gradient and the top fraction containing Pma1p (RobertsGalbraith et al., 2010). The F-BAR domain that was involved in interaction with lipid bilayers in vitro and in membrane binding (Itoh et al., 2005; Tsujita et al., 2006; Shimada et al., 2007) could have particular characteristics with regard to the membrane solubilization. Thus, Tos2p and Rgd1p are associated with membranes structures, and their similar behaviour following chemical treatment and centrifugation could be indicative of a localization of these proteins in a same cellular compartment consistent with an in vivo interaction. We observed that Tos2p did not affect the RhoGAP activity of Rgd1p in vitro, suggesting that Tos2p does not act directly on the ability of Rgd1p to activate GTP hydrolysis by Rho3p and Rho4p. However, using a pull-down assay, we showed that the depletion of Tos2p results in sustained levels of activated Rho3p in yeast. To explain this variation, it is tempting to propose an in vivo regulation of the GAP activity of Rgd1p by Tos2p. Tos2p might influence the RhoGAP activity through protein interaction with Rgd1p in a particular conformation or within a protein complex. Nevertheless, considering that the Rgd1p GAP activity was not directly measured from the TOS2-inactivated strain, other mechanisms cannot entirely be ruled out, for example an action of Tos2p on the GEF of Rho3p. Tos2p might also influence the active Rho3p abundance in other ways. Indeed, Tos2p interacts with Cdc24p, the guanidine nucleotide exchange factor required for the activation of Cdc42, and with the protein kinase C Pkc1p, which functions downstream of the Rho1 GTPase (Drees et al., 2001). Tos2p may provide a regulatory connection between Rho1- and Cdc42-regulated pathways and the Rgd1p/Rho3p module. In this case, an increase in active Rho3p abundance in the tos2D strain could result from multiple effects including the lack of Tos2p and those related to the Tos2 partners. However, whatever the mechanism for explaining the variation of active Rho3p, the data support the functional links between Tos2p and the GTPase. The suppressor effect of TOS2 overexpression on rgd1D sensitivity to low pH supports the existence of a pathway 2010 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved c S. Claret et al. compensating the absence of the Rgd1p protein. The suppression of rgd1D sensitivity may be mediated by interactions of Tos2p with other proteins such as Pkc1p or Cdc24p (Drees et al., 2001; Toenjes et al., 2004). The Pkc1p kinase could be implicated in this suppression phenomenon. We demonstrated that components of the PKC pathway are required for tolerance to low pH and that low-pH stress activates the PKC signalling pathway through phosphorylation of Slt2p, the last kinase in the MAP kinase cascade (Claret et al., 2005). Moreover, we reported that the overexpression of several components of the PKC pathway restores the viability of rgd1 cells at the stationary phase (de Bettignies et al., 2001). Cell death is caused by acidification of the medium during growth (Gatti et al., 2005); thus, activation of the PKC pathway can prevent cell death of the rgd1D mutant in an acidic medium. Using PST1-lacZ as a reporter gene for PKC pathway activation (Claret et al., 2005), we observed that TOS2 overexpression in wild-type cells increases the basal and activated levels of this pathway after an acidic shock (Fig. S2). Thus, the suppressor effect of TOS2 overexpression on rgd1D sensitivity to low pH could be explained by increased PKC-pathway activation. Altogether, these data, with those already reported (de Bettignies et al., 2001; Claret et al., 2005), suggest that Tos2p, Pkc1p and Rgd1p might belong to the same functional network. Finally, we showed functional interactions between TOS2 and mutated RHO3 alleles. During this analysis, it is interesting to note the suppressive effect of TOS2 overexpression on the rho3-V51 growth defect. This effect seems to be associated with a Rho3p-specific function, strengthening the functional relationship between Tos2p and the GTPase Rho3p. At the restrictive temperature, the rho3-V51 mutant has a defect in the transport of vesicles from the mother cell into the bud and shows a large accumulation of vesicles in mother cells. Thus, it would be particularly interesting to examine the vesicles distribution in the rho3V51 mutant overexpressing TOS2. We demonstrated in this study that Tos2p is a physical partner of the Rgd1p RhoGAP and acts on active Rho3 abundance, suggesting an overall effect of Tos2p on the Rgd1p/Rho3p module. Taking into account our current results, we can imagine that the protein Tos2p could participate in the establishment of a cellular environment modulating in vivo the GAP activity of Rgd1. In addition, we provided further evidence for the functional links between Tos2p and Pkc1p (Fig. S2). Toenjes et al. (2004) previously reported functional links between Tos2p and Cdc24p, the GEF for Cdc42p. Hence, through interactions with these partners, Tos2p is involved in several pathways controlling polarized growth in S. cerevisiae and could fine-tune signalling between the different pathways to optimize yeast growth. Phosphorylation of Tos2p by Cdc28p, a cell cycle cyclin-dependent kinase (Ubersax et al., 2003), together FEMS Yeast Res 11 (2011) 179–191 189 Tos2p a functional partner of the Rgd1-Rho3 module with the localization of Tos2p at the bud tip and bud neck, might contribute to this cellular role during growth by interacting with Cdc24p, Pkc1p and Rgd1p at particular times and locations. The lack of an obvious secondary structure for Tos2p could explain its ability to interact physically with different proteins, with Tos2p adapting its conformation according to the protein partner. Further studies will be necessary to understand the intriguing role of Tos2p in signalling between these different pathways all involved in polarized growth. Acknowledgements We thank D. Gallwitz for providing the tos2D in an FY background. We also thank P. Brennwald for the gift of rho3V51 and cdc42-6 strains and Y. Matsui for the rho3-1 rho4D strain. We are grateful to C. 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