Enzyme Activity Guided Inquiry
Lab Turnip Peroxidase
Introduction
SCIENTIFIC
BIO FAX!
Peroxidase enzymes are widely distributed in plants and animals, including bacteria, to protect cells against the effects of
oxidative stress and cell damage due to hydrogen peroxide. Peroxidases are easily extracted from turnips and other root vegetables and provide a model enzyme for studying enzyme activity—how the rate of an enzyme-catalyzed reaction depends
on biotic and abiotic factors. Enzyme activity studies reflect enzyme structure and function and provide the foundation for
understanding the mechanism or theory of enzyme action.
Background
The term peroxidase refers to both a class of oxidoreductase enzymes and to specific enzymes within that class. As a general
class of enzymes, peroxidases catalyze the oxidation−reduction decomposition reaction of hydrogen peroxide. There are
two general types of peroxidases—catalase and peroxidase. Catalase catalyzes the disproportionation reaction of hydrogen
peroxide to water and oxygen gas (Equation 1). In reactions mediated by catalase, hydrogen peroxide substrate molecules
act as both oxidizing agent (electron acceptor) and reducing agent (electron donor). In contrast, peroxidase acts in the presence of other naturally occurring organic reducing agents, such as ascorbic acid and glutathione, to catalyze the decomposition of hydrogen peroxide. Organic reducing agents, abbreviated AH2, transfer hydrogen atoms and electrons to hydrogen
peroxide, resulting in the formation of water and oxidized organic substrates such as A2 in Equation 2. Oxygen gas is not
produced in this latter reaction.
Catalase-catalyzed reaction
Peroxidase-catalyzed reaction
2H2O2 → 2H2O + O2
Equation 1
2H2O2 + 2AH2 → 4H2O + A2
Equation 2
The differences in the two equations shown above provide a basis for studying the enzyme activity of turnip peroxidase
in this guided-inquiry laboratory investigation. Many endogenous organic compounds may be used as reducing agents in
Equation 2. One of the most common and convenient reducing agents for this purpose is guaiacol, a colorless compound
having the formula C7H8O2. Oxidation of guaiacol according to Equation 2 converts it to a dark orange compound called
tetraguaiacol. The rate of the reaction may be followed by measuring the absorbance or color intensity of the orange product as a function of time.
Materials
Buffer capsules, pH 3−8, 100 mL each
Erlenmeyer flask, 500-mL
Distilled or deionized water
Filter paper and funnel
Guaiacol solution, C7H8O2, 0.2%, 1 mL
Hot plate
Hydrogen peroxide, H202, 3%, 3 mL
Knife, paring
Isopropyl alcohol, (CH3)2CHOH 70%, 100 mL
pH paper, narrow range
Phosphate buffer, pH 7, 500 mL, NaH2PO4 and Na2 HPO4
Pipets, serological, 2- and 5-mL
Turnip (root/tuber)
Spectrophotometer
Ice and water baths
Test tubes, 13 × 100 mm, 6, and rack
BlenderThermometer
Timer
© 2016 Flinn Scientific, Inc. All Rights Reserved.
Publication No. 11137
061616
BIO-FAX. . .makes science teaching easier.
1
Enzyme Activity Guided Inquiry Lab Turnip Peroxidase continued
Safety Precautions
The guaiacol solution contains isopropyl rubbing alcohol (70%) and is a flammable liquid. Keep away from heat, flames, and other sources of
ignition. Dilute hydrogen peroxide solution (3%) may be irritating to the eyes and skin. Exercise care when using a knife to peel and cut the
turnip. Avoid contact of all chemicals with eyes and skin. Pure guaiacol is toxic by ingestion. Wear chemical splash goggles, chemical-resistant
gloves, and a chemical-resistant apron. Please review current Material Safety Data Sheets for additional safety, handling, and disposal
information.
Preparation
1. Extraction Buffer: Prepare 500 mL pH 7 phosphate buffer by mixing equal volumes, 250 mL each, of 0.1 M sodium phosphate monobasic and sodium phosphate dibasic solutions.
2. Reaction Buffers: Dissolve one each pH 3−8 buffer capsules in 100 mL distilled or deionized water according to instructions.
3. Hydrogen Peroxide: Dilute 3 mL of 3% hydrogen peroxide to a final volume of 500 mL using distilled or deionized water.
Store in a dark bottle protected from heat and light.
Enzyme Extraction
Peel and cut a turnip root into small cubes, about 1 cm on each side. Measure approximately 2 g (about 2 pieces) in a weighing dish and add to 300 mL of pH 7 phosphate extraction buffer in a blender. Pulse the turnip root in 1−3 minute bursts three
times, with 2-minutes rest between pulses, to homogenize and extract the enzymes. Filter the enzyme extract through filter
paper and store the extract over ice or in the refrigerator.
Baseline Activity—Peroxidase-Catalyzed Oxidation Decomposition of Hydrogen
Peroxide
Read the entire procedure before beginning. Pay special attention to the requirements for mixing the tubes and timing the reaction. Accurate timing is crucial for rate studies.
1. Turn on the spectrophotomer, adjust the wavelength setting to 500 nm, and allow the instrument to warm up for 15–20
minutes.
2. Prepare separate 13 × 100 mm test tubes containing substrates (tube S) and enzyme (tube E) in pH 5 buffer as shown below.
The presence of pH 7 extraction buffer in tube E makes it possible to vary the enzyme concentration while maintaining
the overall buffer composition constant. The concentration of the diluted hydrogen peroxide is described in the Preparation
section.
Tube S:
2 mL pH 5 buffer
Tube E:
2 mL dilute H2O2
1 mL 0.2% guaiacol
2 mL pH 5 buffer
1.5 mL pH 7 phosphate extraction buffer
0.5 mL enzyme extract
3. Prepare a “blank” by combining 4 mL pH 5 buffer, 2 mL dilute H2O2, 1 mL guaiacol solution, and 2 mL pH 7 phosphate
buffer in a 13 × 100 mm test tube.
4. Zero the spectrophotometer (zero absorbance, 100% transmittance) at 500 nm using the blank solution.
5. When ready to begin a kinetics run, carefully pour the contents of tube S into tube E and immediately start timing.
Carefully pour the combined contents back into tube S, wipe the outside of the tube with lab tissue, and place the test tube
in the spectrophotometer cell holder.
6. Measure and record the absorbance as a function of time every 20 seconds. Ideally, the elapsed time between mixing the
tubes and recording the first absorbance measurement should be no more than 20−40 seconds!
7. Graph absorbance versus time to obtain the reaction rate from the slope of the line.
2
© 2016 Flinn Scientific, Inc. All Rights Reserved.
Enzyme Activity Guided Inquiry Lab Turnip Peroxidase continued
Enzyme Activity—Opportunities for Inquiry
Vary the enzyme and substrate concentrations and investigate the effects of pH, temperature, and possible inhibitors on the
rate of the peroxidase-catalyzed decomposition of hydrogen peroxide. Analyze and graph the results and explain in terms of the
mechanism of enzyme action and structure−function relationships involving biological protein molecules. Precise volume transfers and accurate “time zero” measurements are essential for meaningful results and analysis.
AP Biology Curriculum Framework (2012)
Essential Knowledge 2.D.1. All biological systems from cells and organisms to populations, communities and ecosystems are
affected by complex biotic and abiotic interactions involving exchange of matter and free energy.
Essential Knowledge 4.A.1. The subcomponents of biological molecules and their sequence determine the properties of that
molecule.
Essential Knowledge 4.B.1. Interactions between molecules affect their structure and function.
Sample Results
Effect of Enzyme Concentra9on 0.80 0.70 0.40 0.60 [E] = 2x [E] = x [E] = 0.5 x 0.50 0.40 y = 0.0008x R² = 0.9984 0.30 0.20 y = 0.0004x R² = 0.9698 0.10 0.00 y = 0.0008x R² = 0.9984 0.35 Absorbance at 500 nm Absorbance at 500 nm Effect of Substrate Concentra9on y = 0.0016x R² = 0.9957 0.30 0.20 100 200 300 400 500 0.15 600 0 100 200 300 1.50 Rate, Delta Abs/sec 500 600 Effect of Substrate Concentra.on on Reac.on Rate Rate, Delta Abs/sec 2.00 Rela.ve Enzyme Concentra.on 3
400 Time (sec) y = 0.0008x R² = 1 1.00 [S] = 0.25x 0.05 Effect of Enzyme Concentra.on on Reac.on Rate 0.50 [S] = 0.5x y = 0.0005x R² = 0.959 Time (sec) 0.0018 0.0016 0.0014 0.0012 0.0010 0.0008 0.0006 0.0004 0.0002 0.0000 0.00 [S] = 2x 0.10 0.00 0 y = 0.0007x R² = 0.9736 0.25 © 2016 Flinn Scientific, Inc. All Rights Reserved.
2.50 0.0009 0.0008 0.0007 0.0006 0.0005 0.0004 0.0003 0.0002 0.0001 0 0.0 0.5 1.0 1.5 2.0 Rela.ve Substrate Concentra.on 2.5 Enzyme Activity Guided Inquiry Lab Turnip Peroxidase continued
1.8 0.0025 1.6 0.0020 1.4 Rate, Delta Abs/sec Rate, Delta Abs/sec Effect of Temperature on Enzyme Ac:vity Effect of pH on Enzyme Ac8vity 1.2 1.0 0.8 0.6 0.4 0.2 0.0 pH 3 pH 4 pH 5 pH 6 pH 7 0.0015 0.0010 0.0005 0.0000 pH 8 9 deg C 23 deg C 35 deg C 45 deg C 50 deg C Temperature Materials for Enzyme Activity Guided Inquiry Lab are available from Flinn Scientific,
Inc.
Catalog No.
B0227
B0099
G0054
H0009
I0021
AP4869
FB2039
Description
Buffer Capsules, pH 2–12
Buffer Solution Concentrated, pH 7, 500 mL
Guaiacol Solution, 0.2%, 100 mL
Hydrogen Peroxide, 3%, 473 mL
Isopropyl Alcohol, 70%, 500 mL
Blender, Single-Speed
Peroxidase Enzyme Activity—Advanced Inquiry Lab
Consult your Flinn Scientific Catalog/Reference Manual for current prices.
4
© 2016 Flinn Scientific, Inc. All Rights Reserved.