FEMS Microbiology Ecology 53 (2005) 33–40 www.fems-microbiology.org Degradability of dissolved soil organic carbon and nitrogen in relation to tree species Oili Kiikkilä *, Veikko Kitunen, Aino Smolander Finnish Forest Research Institute, P.O. Box 18, FIN-01301 Vantaa, Finland Received 19 May 2004; received in revised form 17 August 2004; accepted 19 August 2004 First published online 2 November 2004 Abstract The degradability and chemical characteristics of water-extractable dissolved organic carbon (DOC) and nitrogen (DON) from the humus layer of silver birch (Betula pendula Roth), Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.) stands were compared in short-term incubation of soil solutions. For all extracts the degradation of DOC and DON was low (12–17% loss) and increased in the order: birch, spruce and pine. In the humus layer under pine a relatively larger pool of rapidly degrading dissolved soil organic matter (DOM) was indicated by the [3H]thymidine incorporation technique, which measures the availability of DOM to bacteria. The degradation of DOC was explained by a decrease in the hydrophilic fraction. For DON, however, both the hydrophilic and hydrophobic fractions tended to decrease during incubation. No major differences in concentrations of hydrophilic and hydrophobic fractions were detected between tree species. Molecular size distribution of DOC and DON, however, revealed slight initial differences between birch and conifers as well as a change in birch extract during incubation. The depletion of very rapidly degrading fractions (e.g., root exudates and compounds from the litter) may explain the low degradability of DOM in the humus layer under birch. 2004 Published by Elsevier B.V. on behalf of the Federation of European Microbiological Societies. Keywords: Degradation; DOC; DON; Chemical characteristics; Tree species 1. Introduction Dissolved soil organic matter (DOM) contains organic compounds from rainwater and throughfall, root exudates, microbial metabolites, and decomposed litter. DOM continuously undergoes various processes such as precipitation, mechanical filtering, adsorbtion, ionexchange and degradation. DOM represents a range of C- and N- containing molecules that vary in degradability [1,2]. One way to characterize DOM is to fractionate it into acids, bases and neutrals with hydrophobic and hydrophilic groups [1,3,4]. The hydrophilic neutral frac* Corresponding author. Tel.: +358 010 211 2598; fax: +358 010 211 2206. E-mail address: Oili.Kiikkila@metla.fi (O. Kiikkilä). tion, which includes the carbohydrates, has been reported to be the most degradable fraction [4,5] and the hydrophobic acid fraction the least degradable fraction [1,4]. DOM can also be characterized according to molecular size distribution, which has been studied very little [6,7]. However, we might expect that smaller DOM molecules or units would be degraded preferentially [6]. Birch (Betula pendula Roth or B. pubescens Ehrh.), as compared to spruce (Picea abies (L.) Karst.) and pine (Pinus sylvestris L.), has a reputation in forest history as a tree species that improves soil conditions [8]. Soils under deciduous trees have often shown higher mineralization of C than soils under coniferous trees [7,9–12]. Explanations given for the differences between birch soils and coniferous soils have included differences in ground vegetation cover, chemical composition of leaf 0168-6496/$22.00 2004 Published by Elsevier B.V. on behalf of the Federation of European Microbiological Societies. doi:10.1016/j.femsec.2004.08.011 34 O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 litter, vertical distribution pattern of roots, root activities such as root exudation, physical structure of soil, and microclimatic conditions [8]. A major pathway for the mineralization of C and N in soils is often thought to be the turnover of dissolved organic carbon (DOC) and nitrogen (DON) [13]. The DOC and DON concentrations and the C and N mineralization were all higher in the humus layer under birch than under pine [7]. Extracts of deciduous litter [14] and humus layer [7,15] had higher concentrations of DOC than did extracts of coniferous litter and the humus layer, respectively. However, the degradability of DOM can also contribute significantly to C and N mineralization [6]. Very little is known about the degradability of DOM in forest soils or about its significance in, e.g., regulating N availability. Conifer litter contains more recalcitrant, hydrophobic aromatic compounds [16], whereas leaf litter contains more easily degradable hydrophilic compounds: sugars, amino acids and aliphatic acids [14]. These differences in litter composition are not directly reflected in dissolved soil organic matter, because the composition of DOM is also affected by, e.g., the decomposition rate of different compounds. No major differences in the proportions of hydrophilic and hydrophobic compounds, or in molecular size distribution of DOM were observed in the humus layer under different tree species [7,15]. Depending on the specific compounds included in the hydrophilic or hydrophobic fractions, however, the degradation of DOM can differ between the tree species [14]. The aim of this study was to compare the degradability of water-extractable DOC and DON in the humus layer under silver birch and two conifers, Scots pine and Norway spruce, and to explain this degradability according to the chemical characteristics of DOC and DON. Degradability was assessed in an incubation experiment by measuring loss of DOC and DON, and the availability of DOM to bacteria by the [3H]thymidine incorporation technique. Chemical characteristics of DOM were studied by fractionation of DOC and DON into hydrophilic and hydrophobic compounds, and into four groups with different molecular sizes. 2. Materials and methods 2.1. Study site The study stands, which had originally been a homogenous Norway spruce stand, were adjacent 70year-old stands in Kivalo, northern Finland (6620 0 N/ 2640 0 E), that were dominated by silver birch, Scots pine or Norway spruce. The soil type was podzol, and the site type was Hylocomium-Myrtillus [17]. Three study plots (25 m · 25 m) were placed in each stand. The birch stand was a pure single-species stand, but the coniferous stands also contained species other than the dominant one. The history and characteristics of the tree stands have been described earlier in more detail [7]. 2.2. Soil sampling Soil samples (core diameter 58 mm) were taken systematically on 9th October 2002, three weeks after the litter fall of birch, from the humus layer of all plots. After the green plant material was removed, the samples were sieved through a 4.0 mm mesh and stored in plastic bags at 2 C. The content of organic matter was measured as loss-on-ignition at 550 C. 2.3. Incubation experiment Soil samples (for birch and spruce 600 ml, for pine 900 ml to obtain similar concentrations of C) were shaken in 1.5 l ultra-pure water for 2 h (200 rpm). After centrifugation at 28,000g for 20 min, the suspensions were finally filtered through 0.2 lm PES membrane as described previously [7]. The extracts were stored in a freezer until incubation. Before incubation, all extracts were diluted to a concentration of 23 mg l1 DOC (SD = 2, n = 9). The extracts (360 ml) were placed in autoclaved 1 l glass bottles sealed with rubber septa. pH was adjusted to the level of the extract with the highest pH (5.1) with 0.1 M NaOH. The mixture of all soils, equal to the amount of organic matter (3 g wet weight), was crushed in 100 ml water, and 0.5 ml of the suspension was added to the sample bottles as inoculum. The amount of DOC added with the inoculum was 2 mg l1. The bottles were shaken (80 rpm) in the dark at 20 C. On the first days, the CO2 evolution was measured daily by gas chromatography (HP 6890) and twice a week thereafter. After the samples were measured, they were aerated. After 15 days, half of the extracts were frozen until further analysis. The rest of the extracts were incubated for 30 days after NH4Cl was added to obtain a C:N ratio of 10. The samples were incubated with two laboratory replicates. CO2 evolution was determined for both samples. Other measurements were performed on the combined samples of the two replicates. Molecular size distribution was determined and the samples were fractionated into hydrophilic and hydrophobic groups initially and after the 15-day incubation. The initial and remaining concentrations of DOC and DON were determined as described previously [7] and the degradability was expressed as the percentual loss from the initial concentration of DOC (DOCloss%) or DON (DONloss%). Molecular size distributions of DOC and DON were determined by ultrafiltration (The Amicon 8050 stirred cell system) using AmiconÕs diaflow-membranes YM100, YM10 and YM1 with O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 nominal weight cut-offs at 100, 10 and 1 kDa, respectively. Of the load volume (50 ml), about 70% was filtered. DOC and DON were fractionated into hydrophilic and hydrophobic groups using the procedure described previously [3,18]. The pH was adjusted to 2, and 50 ml of the extract was passed through an XAD-8 (Amberlite XAD-8, Merck) resin column to adsorb the hydrophobic compounds. To assess the availability of DOM to bacteria the [3H]thymidine incorporation technique [19,20] was applied to measure the rate of the bacterial growth. Bacterial suspension was prepared by shaking (250 rpm) 3 g (wet weight) of a mixture of all soils, equal to the amount of organic matter, in 100 ml of ultrapure water for 1 h. The bacterial suspension was centrifuged for 10 min (750g) and filtered through quartz wool. Then 8 ml of the extract (TdRsample) or distilled water (TdRwater) was added to 6 ml of the bacterial suspension. Preliminary experiments (3, 20, 48 and 96 h) were made in order to determine the time required to reach the peak in the [3H]thymidine incorporation rate (TdR) after the addition of substrate to the bacterial suspension. TdR was measured after the extract was shaken (100 rpm) at 20 C for 23 h. 1.4 ml was taken into microcentrifuge tubes, 3.5 ll methyl[3H]thymidine (25 Ci mmol1, 925 GBq mmol1) was added and the samples were incubated for 2 h at 22 C. Then 70 ll ice-cold 100% TCA was added and kept at 4 C for 30 min. The samples were centrifuged (17,400g) for 10 min and the supernatant was aspirated. The two washing steps consisted of adding 1.4 ml of cold 5% TCA and ice-cold 80% ethanol. After centrifugation and removal of the supernatant, 0.2 ml of 1 M NaOH was added, and the samples were maintained at 90 C for 1 h. A 1 ml scintillation cocktail was added, and the radioactivity was measured using a liquid scintillator. Availability of DOM to bacteria was calculated by dividing TdRsample by TdRwater (TdR). TdR values >1 mean that DOM was a substrate for bacteria, the higher the value the better the substrate. Values <1 mean that DOM inhibited bacteria. 2.4. Data analyses Paired samples t test was used to determine significant differences between the initial and after incubation values. One-way ANOVA followed by an LSD test was used to determine the differences between the tree species both before and after the incubation. Pearson correlation coefficients were calculated. To normalize the distribution of the variables logarithmic transformations were made to TdR and the C:N ratio data. Statistical significance for all tests was set at p < 0.05. Data on molecular size distribution was explored with non-metric multidimensional scaling (MDS), which considers the rank order of distances, using a proportional Bray–Curtis coefficient for computing the pair- 35 wise distances. Program package PC-ORD [21] was used. Before MDS, the values were double square-root transformed (y0.25) to down weight the influence of very abundant size classes. 3. Results The concentration of total water-extractable DOC, when calculated on the basis of soil organic matter (o.m.), was significantly higher in the humus layer under birch (1300 ± 70 mg kg1 soil o.m., means ± SE, n = 3) and spruce (1100 ± 50 mg kg1 soil o.m.) than under pine (710 ± 40 mg kg1 soil o.m.). The total amount of DOC calculated per unit soil organic matter degraded during the incubation tended to be slightly higher in birch and spruce soils (150 ± 20 mg kg1 soil o.m.) than in pine soil (120 ± 10 mg kg1 soil o.m.). During incubation, when the initial DOC concentrations were adjusted to be equal (23 mg l1), the proportional degradation of DOC (DOCloss%), however, was highest in pine (17.2 ± 1.2%) and lowest in birch soil (11.8 ± 1.0%) (Fig. 1(a)). N addition increased the degradation of DOC, which was finally highest in spruce and lowest in birch soil (Fig. 1(a)). Rather similar results were observed when degradation of DOC was monitored as CO2C production (Fig. 2). DOCloss% correlated moderately with CO2–C loss (r = 0.70, n = 18; after incubation and N addition and incubation). The concentration of total water-extractable DON was higher in birch (48 ± 3 mg kg1 soil o.m.) and spruce soil (55 ± 6 mg kg1 soil o.m.) than in pine soil (28 ± 1 mg kg1 soil o.m.). The proportional degradation of DON (DONloss%) followed the same order as the degradation of DOC, being highest in pine soil and lowest in birch soil (Fig. 1(b)). After N addition the degradation was highest in spruce soil and lowest in birch soil. The C:N ratio of DOM was initially at the same level in all soils (Table 1). After N addition and incubation, the C:N ratio of the spruce extract was significantly higher than that of birch and pine soils; thus after N addition the degradation of DON increased most in the spruce extract. The concentrations of both the hydrophilic and hydrophobic fractions of DOC were initially at the same level in all soils (Fig. 3). The correlation between DOCloss% and the initial proportion in the hydrophilic fraction of the total DOC was moderate (r = 0.71, n = 9). In the hydrophilic fraction the decrease detected in birch (14%) and pine soils (35%) was significant. The concentration of the hydrophobic fraction remained about the same during incubation. The concentration of the hydrophilic fraction of DON did not differ significantly between the tree species, but the hydrophobic fraction was significantly higher in birch soil than in pine soil (Fig. 3). DONloss% 36 O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 30 b* 20 a* 100 * * DONloss% DOCloss% * ab* 10 * 80 60 40 * a* ab* b* 20 0 0 15 d incubation (a) N addition and incubation Birch 15 d incubation (b) Spruce N addition and incubation Pine Fig. 1. Proportional degradation (mean and SE) of: (a) DOC (DOCloss%) and (b) DON (DONloss%) after 15 d incubation, and after N addition and incubation in the humus layers under birch, spruce and pine. Significant differences between the means for different tree species are marked with different letters. Significant differences in the concentrations of DOC and DON between the initial and after incubation values are marked with *. did not correlate with the concentrations of either of the fractions. The hydrophilic fraction of DON decreased 4% in birch soil, 31% in pine soil, and 25% in spruce soil, but the decreases were not significant. The hydrophobic Fig. 2. Proportional degradation of DOC (mean and SE) measured as CO2 evolution during the incubation in the humus layers under birch, spruce and pine. fraction of DON also decreased slightly in all soils but decreased significantly only in birch soil (20%). The C:N ratio of the hydrophilic fraction was much lower (ca. 10) than that of the hydrophobic fraction (32–44). The C:N ratio of the hydrophobic fraction of birch was significantly lower than that of spruce or pine. The C:N ratio of the hydrophilic fraction remained at the same level during incubation, while the C:N ratio of the hydrophobic fraction tended to increase (not significantly) in all soils (Table 1). Initially, the availability of DOM to soil bacteria (TdR) was clearly highest in pine soil (Fig. 4). During incubation TdR decreased clearly and significantly in pine soil (44–77%) and to a lesser extent in spruce soil (12–31%, not significant) and little or not at all in birch soil, indicating a relatively large pool of rapidly degrading DOM in pine soil. After N addition and further incubation, TdR was very low, even negative in pine, and had decreased significantly in all soils (Fig. 5). The correlation between the change in TdR and DOCloss% (r = 0.76, n = 18; after incubation and after N addition and incubation) was moderate. TdR correlated Table 1 Mean and standard error (n = 3) of the C:N ratio of the total DOM and the hydrophilic and hydrophobic compounds of DOM extracted from the humus layer under birch, spruce, and pine C:N Initial 15 d incubation N addition and incubation Total Birch Spruce Pine 23.1 (1.5) 26.6 (0.9) 24.5 (1.4) 22.9 (1.4)a 28.0 (0.9)b 26.4 (1.4)ab 33.7 (4.6)a 65.2 (12.9)b* 34.3 (4.8)a Hydrophilic compounds Birch Spruce Pine 10.1 (2.0) 11.5 (0.3) 10.1 (1.0) 10.4 (2.6) 12.1 (1.6) 9.5 (1.0) Nd Nd Nd Hydrophobic compounds Birch Spruce Pine 32.3 (0.5)a 41.5 (2.7)ab 43.7 (4.9)b 38.7 (1.2)a 48.3 (4.1)ab 51.3 (1.2)b Nd Nd Nd The C:N ratio was determined initially, after 15 d incubation, and after N addition and incubation. Means followed by a different letter differ significantly within tree species (LSD, p < 0.05). Nd, not determined. * n = 2. O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 Hydrophilic Hydrophobic 18 * 6 * 4 2 DOC (mg/l) DOC (mg/l) 8 12 6 0 0 (a) Birch Spruce Pine (b) Birch Pine 0.8 DON (mg/l) 0.8 DON (mg/l) Spruce Hydrophobic Hydrophilic 0.6 0.4 0.2 a 0.6 A* 0.4 ab AB b B 0.2 0.0 (c) 37 0.0 Birch Spruce Pine Initial (d) Birch Spruce Pine 15 d incubation Fig. 3. Concentrations (means and SE) of hydrophilic and hydrophobic compounds of DOC and DON in the humus layers under birch, spruce and pine initially and after 15 d incubation. Significant differences between the means for different tree species are marked with different letters (capital letters after-incubation). Significant differences between the initial and after 15 d incubation values are marked with *. 10.0 b Spruce * * 1.0 Initial 15 d incubation N addition and incubation Birch Spruce Initial TdR * 15 d incubation Pine * DIM2 a Birch a Pine 0.1 Fig. 4. Availability of DOM to bacteria (mean and SE) (TdR) initially, after 15 d incubation and N addition and incubation. Significant differences between the means for different tree species are marked with different letters. Significant differences between initial and afterincubation values are marked with *. Note the logarithmic scale. positively with the proportions of hydrophilic DOC (r = 0.63, n = 17; initial and after incubation) and hydrophilic DON (r = 0.54, n = 17) of the total DOC or DON, respectively. MDS of the molecular size distribution of DOC and DON initially separated birch from conifers and during incubation showed a change in birch soil along dimension 2 (Fig. 5). After incubation, all plots were located close together, indicating that the molecular size distribution was very similar in all soils. The initial difference between birch and conifers seemed to be explained by two size classes. The 10–100 kDa size class of both the DOC and DON of birch soil increased (not significantly) during incubation. For DOC the increase was from DIM1 Fig. 5. Multidimensional scaling ordination along the first two dimensions (DIM 1 and DIM 2) of the molecular size distribution with respect to incubation and tree species. 7.0 ± 2.7 to 11.1 ± 0.9 mg l1 and for DON from 0.19 ± 0.07 to 0.34 ± 0.06 mg l1. Another difference was in size class 1–10 kDa, which initially was significantly higher in birch than in conifers and in birch soil decreased significantly from 9.4 ± 3.3 to 4.3 ± 0.4 mg l1 DOC and from 0.29 ± 0.07 to 0.14 ± 0.03 mg l1 DON. Initially the C:N ratios of the 1–10 and 10–100 kDa size classes were higher (33–48) than those of the <1 or >100 kDa size classes (10–28). 4. Discussion The degradation of DOM, that is, mineralization and microbial incorporation, was low in all soils; during the 38 O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 15-day incubation, only 12–17% of the DOC and 12– 25% of the DON was degraded. Earlier studies have reported 9–93% degradability of forest soil-derived DOC measured by various methods of sampling and incubation [13,16]. DOC can be divided into recalcitrant, slowly degradable (stable), easily degradable (semi-labile), and very rapidly degradable (labile) fractions [6]. Labile DOC has seldom, possibly never, been measured completely in degradation studies [22]. Higher concentration of total water-extractable DOC was reported in the humus layer under birch than under pine [7], which was also the case in this study. We also expected the amount of DOC degraded during the 15-day incubation, which we might call semi-labile DOC, to be higher in birch soil extract than in pine soil extract. However, it was only slightly higher. Moreover, the proportional degradability of DOC (DOCloss%) was clearly lower in birch soil than in pine soil. However, we measured only part of the annual DOM flux in the field. Several points support the possibility that the laboratory incubation used here gave degradability values lower than the actual values in the field, especially for the humus layer under birch. First, the amount of stable DOM extracted from the humus layer under birch may be higher than that of pine. This was supported by the result that by the end of incubation the availability of DOM to bacteria (TdR) had decreased sharply in pine soil but hardly at all in birch soil. The stable DOM could also be more degradable in the humus layer under birch than under pine [16]. Second, fresh leaf litter has been suggested to be the primary source of DOM [23]. Part of the semi-labile DOM originating from litter may have been depleted in the field late in the autumn (three weeks after the leaf fall of birch) or during processing of the soil, especially in the humus layer under birch. Previously, the hydrophilic fraction was found to be depleted and the hydrophobic fraction to be largest in the autumn [24]. This was supported by the fractionation results. The easily degradable hydrophilic DOC and DON tended to be slightly lower, whereas the more recalcitrant hydrophobic DON was higher under the humus layer of birch than under that of pine. Third, labile DOM may be a larger pool of DOM than the stable or semi-labile DOM. The degradation of amino acids, which were calculated to constitute 10–20% of the total DON, was extremely rapid, turning over 20 times a day [25]. Root exudates such as carbohydrates and amino acids have been suggested to be the primary source of labile DOM in forest soils [26]. Birch soil contains more root exudates than conifer soils do [27], and the composition of root exudates can differ between tree species [28]. Therefore, the measures of DOM in laboratory incubation may differ considerably from the field situation, especially in birch soil. In accordance with earlier studies [1,4], the degradability of DOC was explained by the loss of the hydrophi- lic fraction. Hydrophilic compounds are, in general, more degradable than hydrophobic compounds; but they can also include recalcitrant compounds such as some hydrophilic acids [4,14]. Therefore, only moderate correlations were expected between the initial proportion of hydrophilic compounds of total DOC and DOCloss% or TdR. With regard to DON, both the hydrophilic and hydrophobic fractions appeared to degrade slightly. Molecular size distribution showed only slight differences between birch and conifers. In conifer soils during incubation all size classes decreased about the same amount. In birch soil a decrease was detected in the smaller molecular size (1–10 kDa) and an increase in the larger molecular size (10–100 kDa) class of both DOC and DON. Thus, birch apparently differed from the conifers. Very little is known about the link between the degradability and the molecular size distribution of DOM. Molecular size may be only a secondary attribute controlling DOM degradability, the primary factor being structural characteristics [6,29]. On the other hand, labile or semi-labile compounds of low molecular size are assumed to be released continuously from decaying plant materials [30] or microorganisms [31]. The availability of DOM to bacteria as measured with the [3H]thymidine incorporation technique, seems to be compatible with other measures of DOM degradation. The correlation between the change in TdR and DOCloss% was moderate. TdR measurement gave a larger pool of degradable DOM than did the other measures of degradability, which is in accordance with previous results [5]. Thus, the thymidine incorporation technique can be applied in studying the availability of DOM to bacteria. Fungi might be more important than bacteria in DOM decomposition in soil. However, because in soils the degradation is enhanced by factors such as highly active biofilms on particle surfaces, the degradability of DOM with solution assay reflects mainly bacterial activity [31]. The C:N ratio of the hydrophobic fraction tended to increase slightly during incubation (Table 1), thus showing relatively greater decomposition of DON than of DOC. No preference was detected in the hydrophilic fraction, which, however, was clearly more N-rich than the hydrophobic fraction. Few studies have investigated the degradation of DON in soil. The DON of forest soil percolates was found to be as refractory as the DOC [1], whereas in agricultural soil greater decomposition of DON than DOC was observed [32]. The differences can be partly explained by the different C:N values. In the forest soil percolates the C:N ratio was 43–55 [1], in the agricultural soil it was 13 [32], while we obtained 21–24. Addition of nitrogen increased the degradability of DOC in pine soil and especially that of spruce soil, but to a lesser extent that of birch soil. The addition O. Kiikkilä et al. / FEMS Microbiology Ecology 53 (2005) 33–40 of mineral N also seemed to increase the degradability of initial DON because for all soils the C:N ratio increased. After N addition the degradability of DON seemed to increase most in spruce soil. This is not surprising since initially the C:N ratio was highest in spruce soil, which thus seemed to suffer most from N deficiency. 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