SUPPRESSIONOF PLANT DISEASES BY COMPOSTS H. A. J. Hoitink, A. G. Stone and D. Y. Han ProfessorandGraduateResearchAssociates,Departmentof Plant Pathology,Ohio Agricult Researchand DevelopmentCenter,The Ohio StateUniversity, Wooster,OH 44691 1. ABSTRACT 2. INTRODUCTION Compostsoffer unique opportunitiesto examinefundamentalinteractionsbetweenplant pathogens,biocontrol agents,soil organicmatter,andplant roots. Theseorganic amendmentshavethe potentialto provide consistentbiological control of manyplant diseases.Foliar, vascularas well asroot pathogensmaybe affectedby composts.Many factorsinfluencethesebeneficialeffects. For example,the compositionof the feedstockused in the preparationof compostsaffectsthepotentialfor biological control aswell asthe microflora active in control. Heatgeneratedduring compostingkills or inactivatespathogensif the processis monitoredproperly.Unfortunately,biocontrol agentswith the exceptionof Bacillus spp. are also killed. Therefore this beneficialmicrofloramustlargelyrecolonizecomposts after peakheating. The compostingenvironmentandconditions during curing and utilization also affect the potential for recolonizationof compostsby biocontrol agents andthe inductionof diseasesuppression.In practice,controlled inoculationof compostwith biocontrol agentshas During the 1960's,nurserymenacrossthe United States explored the possibility of using compostedtree bark as peatsubstitutesto reducepotting mix costs. Early during the utilization of bark composts,improved plant growth anddecreased lossescausedby Phytophthoraroot rotswere observedassidebenefitsin the nurseryindustry. Today it is recognizedthat control of suchroot rots with composts canbe aseffectiveasthat obtainedwith fungicides (Hardy andSivasithamparam,1991; Hoitink et al., 1991;Ownley and Benson, 1991). Therefore,the ornamentalplant industry relies heavily on compostproductsfor control of diseasescausedby thesesoilborneplant pathogens.Composts have replaced methyl bromide in this industry (Quarles and Grossman,1995). In field applicationsof compostssimilar resultshavebeenobtained(Hoitink and Fahy, 1986; Lumsdenet al., 1983, SchUleret al., 1993). Examplesof diseasescontrolledby compostsarereviewed in Hoitink and Fahy, 1986. . suppression. . . . crops,particularly If usedm containermedia(Inbar et al., 1993). The rateof respirationis oneof severalprocedures that can be usedto monitor stability of composts(Iannotti et al., 1994). Variability in compoststability is one of the principal factorslimiting its widespreadutilization. Maturity is lessimportant in ground bed or field agricultureas long asthe compostis appliedsufficiently aheadof planting to allow for additional stabilization;however, lack of maturity frequentlycausesproblemshereaswell. . . Effectsof.chemlcalpropertiesof comp~stson.soilb~~e diseaseseventyo.ftenare~verlooked(reviewedm Holtlnk et al., 1991). Highly salIne compostsenhancePythium andPhytophthoradiseasesunlessthey areappliedmonths proved necessary to induce consistent levels of disease . ,i-' .. I- Stability of compostsmustbe consideredin biological control. Immaturecompostsserveas food for pathogens. Their populationsincreasein freshorganicmatterandcause diseaseevenif colonizedby biocontrolagents.On the other hand,biocontrol agentsinhibit or kill pathogensin mature composts and thereby induce disease suppression. Biocontrol agentsin compostsmay induce systemicacquired resistanceto foliar plant pathogens.Finally, excessively stabilizedorganicmatterdoesnot supportthe activity ofbiocontrol agents.Microorganismsincapableof providing biological control predominatehere. Diseasedevelopson plantsproducedin suchhighly mineralizedorganicmatter . Physicaland chemical propertiesof compostsaffect biol~gical con.trol.Salinity and the rat~ of releaseof plant nutnents,particularlythe amountof mtrogenreleased,affect suppressiveness. CompostpH andtiming of compost applicationrelativeto plantingof cropsareother factorsto be considered.In summary,the field is very complex. ... Composts must be of consistent quality to be used successfully in biological control of diseases of horticultural ahead of planting to allow for leaching. Compost prepared from municipal sewagesludgehavea low carbonto nitrogen ratio. They releaseconsiderableamountsof nitrogen and enhanceFusarium wilt (Hoitink et al., 1987). On the otherhand,compostsfrom high C/N materials,suchastree barks,immobilizenitrogenandsuppressFusariumdiseases if colonizedby an appropriatemicroflora (Trillas-Gay et al., 1986). High amonium and low nitrate nutrition increases X CongresoNacional Agronomico 1111Congresode Fitopatologia 1996 47 I ; ' -; - Suppressionof plant diseasesby... , ' Fusarlum . Wi' Its (Sc hnei' der, 1985), Perhaps the low in C/ N redominantly ammonium-nitrogen-releasingsludge P st enhancesFusarium diseasesfor this reason, compo 3. FATE OF BIOCONTROL AGENTS DURING COMPO STING . .,. The composting process is ofte? divided mto three phases,The initial phaseoccursdurmg the fiTst24-48 hr astemperaturesgradually rise to 40-50 C, and sugarsand other easily biodegradablesu~stances are destroyed,During the secondphase,when high tem~eraturesof 55- 70 C prevail, lessbiodegradablecellulosIc substanc~sare destroyed. Thermophilic microorgansimspredommateduring this part of the process.Plantpathogensand seedsare killed by the heatgeneratedduring this high phase(Bollen 1993; Farrell 1993), Compostpiles must be turned frequently to exposeall partsto high temperatureto produce. a homogeneous productfree of pathogensandweedseeds, Unfortunately, most beneficial microorganismsalso are killed during the high temperaturephase of composting. '" Curing begins as the concentration of readily blode- gradablecomponentsin wastesdeclines,As a result, rates of decomposition,heatoutput and temperaturesdecrease, At this time, mesophilicmicroorganismsthat grow at temperatures<40 C recolonizethe compostfrom the outer low temperaturelayerinto the compostwindro~ or pil,e,Therefore, suppressionof pathogensand/or diseaseIS largely inducedduring curing, becausem~stbiocontrol agentsrecolonizecompostsafter peakheatingalso. Bacillus spp" Enterobacter spp" Flavobacterium balustinum,Pseudomonasspp" otherbacterialgeneraan~ Streptomycesspp" aswell asPenicillium spp" sever~lTrlchodermaspp" Gliocladium virens and other fungi have beenidentified as biocontrol agentsin compost-amended sustrates(ChungandHoitink1990; HadarandGorodecki, 1991;Hardy andSivasithamparam 1991;Hoitink and,Fahy 1986;Nelsonetal., 1983;Phaeet al., 1990), The moisture contentof compostcritically affectsthe potential for bacterial mesophilesto colonizethe substrateafter peakheating, Dry composts«34% moisture,w/w) be~omecolonized by fungi and are conduciveto Pythium diseases,In order to induce-suppression, the moisturecontentmust be high enough(at least40-50%,w/w) sothat bacteriaaswell as fungi colonize the substrateafter peak heating. Water must often be addedto compostsduring compostingand curing to avoid the dry condition. CompostpH also affectsthe potential for beneficial bacteriato colonize composts, A pH <5.0 inhibits bacterial biocontrol agents (Hoitink et ai" 1991). , dampi' " , samecompostproducedin a partonia diseasesthan the tially enclosedfaciltty were h fiew micro ' b ia ' I species ' survive heat treatment(Kuter et al., 1983), Compostpr~duced in the opennear a forest (field compost),an enVi- ronmentthatishigh in microbial speciesdiversity, iscolonized by a greatervariety of biocontrol agentsthan the sameproducedin an in-vesselsystem(Kuter et al., 1983), Frequently,however,Rhizoctoniaand other diseasesare observedfor sometime after compostsare fiTst applied (Kuter et al., 1988; Lumsden et al., 1983). Three approachescanbeusedto solvethis problem:Curingof compostsfor four monthsor morerenderscompostsmoreconsistentlysuppressive(Kuter et al., 1988). The secondapproach is to incorporatecompostsino field soils for several monthsbeforeplanting (Lumsdenet ai" 1983), The third approach is to inoculate composts with specific biocontrol agents(K wok et ai" 1987), . A specific strain of Flavobacterium balust~num, and an is~lateof Tric~odermahamatumhave ~eenide,ntified that mduce levelsofofplant suppression to If,di~eases caused by a consistent broad spectrum pathogens, moculated into compost after peak heating, but before signifi- cant levelsof recolonizationhaveoccurred, Patentshave beenissuedto The Ohio StateUniversity for this process (Hoitink, 1990). In Japan,Phaeet al. (1990), isolateda Bacillus strainthat inducespredictablebiological control in composts,It hasbeenrecognizedfor decadesthat single strainsare not as effective in biological control in field applications as mixtures of microorganisms, (Garrett, 1955). The sameappliesto containermedia(Kwok et ai" 1987), 4. MECHANISMS OF SUPPRESSIONIN COMPOSTS Two classesof biological control mechanismsknown as "general" and "specific" suppressionhave been describedfor compost-amended substrates,Themechanisms involved arebasedon competition,antibiosis,hyperparasitism and the induction of systemicacquiredresistance in the host plant. Propagulesof plant pathogenssuchas Pythium and Phytophthoraspp., are suppressedthrough the "general suppression"phenomenon(Boehm et ai" 1993;Chen et ai" 1988a;Chen et al., 1988b;Cook and Baker 1983; Hardy and Sivasithamparam 1991; Mandelbaumand Hadar 1990), Many types of microorganisms present in compost-amendedcontainer media function as biocontrol agentsagainstdiseasescausedby PhytophthoraandPythiumspp,(Boehmet ai" 1993;Hardy and Sivasithamparam1991), Propagulesof thesepatho., gens,if inadvertentlyintroducedinto compost-~ended ' t ' Variability in suppression 0fRh IZOC ng -,off oma ' d ' andFusariumwilt encounteredm substrates amende With ' . art to randomrecolonization mature~~~~os~~~c~~:~~o~ontrolagentsafter peakheat- substratesdo not germinatein responseto nutrients re, , leasedin the form of seedor root exudates.The high mlcrobial activity and biomasscaused by the " generaI SOt 'I microflora" in such substrate~pre~entsgermination of ~g~O~~ldco~post more consistentlysuppressesRhizoc- sporesof thesepathogensand mfection of the host,(Chen 48 " , , X Congreso Naciona/AgronomicofIll Congreso deFitopat%gia 1996 l H.A. .J. Hoitink, A. G. Stone and D. Y. Han et al., 1988a;Mandelbaumand Hadar 1990). Propagules of thesepathogensremain dormant and are typically not killed if introducedin compost-amended soil (Chenet al., 1988a;MandelbaumandHadar, 1990).An enzymeassay, that determines microbial . . . activity basedon the . rate ofhy- drolysls offluorescem dlacetate (FDA), predictssuppres. .. .. slvenessofpottmg mixesto Pythlumdiseases(Boehmand. Hoitink 1992;Chenet al., 1988a;MandelbaumandHadar 1990. Y d S. .th 1994) S. .1 . fi , ouan Ivasl amparam, . .Iml&: arm" ormah b d I dfi .1 h t Ion . as een eve ope or SOls on "organic larms were Ib d . I I t (W kn h t I 1993) . orne Iseases SOl are essprevaen or e ea. ,. Th I th f t . th t th . ffi t I t I e eng 0 Ime a e suppressivee ec as s a so b d t . d ' th FDA t . .ty (B hm d H ' t ' k may e e ermme WI ac IVI oe an 01m , 1992) Th . . kn th ". 'ty " f th , IS IS own as e carrymg capaci 0 e b tr t I t ' t b. I ' I tr I su s a e re a Ive 0 10oglca con o. The mechanismof biological control for Rhizoctonia solani in compost-amended substratesis differentfrom that of Pythiumand Phytophthoraspp,becauseonly a narrow groupof microorganisms is capableof eradicatingR.solani. This type of suppressionis referred to as "specific suppression"(Hoitink et aI" 1991), Trichodermaspp,including T hamatumand T harzianum,are the predominant hyperparasites recoveredfrom compostspreparedoflignoII I ' t (K t t I 1983. N I t I 1983) ce u OSIC was es u er ea., , e sonea., H 't . . bl f I ., . I yperparasl t th es are microorganisms It .' I capa d ' e 0 th co Th ornzmg fu ' p anpa ogensresu mg m YSlSor ea. ese ngl . b t ' I tr . ' th b. I . I . t eract WI.th various m ac ena s aIDSm e 10oglca contr I f Rh ' t . d . ff (K k t I 1987) It . 0 0 lZOComa ampmg-o wo e a" . IS th d . th f ' t t th t P . 'II . 0 meres a emCI lum spp. are e pre omman yperparasitesrecoveredfrom sclerotiaof Sclerotiumrolfsii . . m and low I composted t t grape t (Hpomace d 'daGhighdsugar k ' 1991 ) '7'.celluh osecon en was e a ar an oro ec I, , 1 rlC 0t d fr th' t d J uerma spp.wereno recovere om IScompos an were .. .. not effective when mtroduced, The composItionof the . feed stock,as expected,appearsto havean Impacton the microflora in compostsactive in biological control. matter due to high glucose concentrationsin such waste (de la Cruz et al., 1993). The sameprocessesmay occurin antibiotic production, which also plays an importantrole in biocontrol. ffr . I h . n maturecompost,were concentrations 0 eenutrlI (Ch I 1988 ) I . fR I . entsare owen et a . a sc erotla0 . so am are :'.. . kIlled by the hyperparasite,andb~ologlcalcontrol prevaIls (Nelsonet al., 1983). The foregomgrevealsthat composts b d I b.l . d h .. must e a equatey sta I Ize to reac that decomposItion .. level wherebiological control ISfeasible. In practice,this . occurs m composts (tree barks, yard wastes, etc.) that have . , " , been(I) stabIlizedfar enoughto avoid phytotoxIcity and . ". (2) colornzedby the approprIatespecific mlcroflora. Pr . I ' d I ' th d fi h. ,. actlca gul e IDes at e met IScntlcaI stage0fd ecomf . I . , ., pOSItion m terms 0 blo oglcal control are not yet available.Industry presentlycontrolsdecompositionlevel by maintaining constantconditions during the entire processand adheringto a given time schedule,Composted pine bark produced by such a processhas beenutilized with great successin floriculture indicating that this approachto quality control is quite acceptable(Hoitink et al,,1991). ,. .. , ExcessivelystabIlizedorganicmatter,the oppositeend f h d .. 0 t e ecompOSltion scale, does not support adequate , , activity of . blocontrol . agents. As a result, suppression . IS . . . lackmg and soIlborne diseasesare severe,as in highly . ,. , mmerahzedsoIlswherehumic substances arethepredomi, nant forms of organicmatter(Workneh et aI" 1993). The I h f. h 'I ' edngt 0 I tImle tf abt .SOI -mco l rpo~a~ed h composts support a equate eve s 0 locontro activity asnot Yet beendetermined. Presumably,it varieswith soil temperature,soil , . . characterIstIcsand the type of orgarncmatterfrom which th d d' . e compostwasPrepare. Loa mg rates and farmm g Prac. tIcesof coursealso playa role. We have studied the "carrying capacity" of soil organicmatterin potting mixespreparedwith sphagnumpeat 5. BIOLOGICAL ENERGY AVAILABILITY to bring a partial solution to this problem (Boehm and VERSUS SUPPRESSIVENESS Thedecompositionlevel of organicmatterin compostamendedsubstrates hasa major impacton diseasesuppression. For example,R. solani is highly competitive as a saprophyte(Garrett, 1962), It can utilize cellulose and colonize fresh wastesbut not low cellulosematurecompost (Chung et aI" 1988). Trichoderma, an effective biocontrol agentof R.solani,is capableof colonizingfresh aswell asmaturecompostbut it growsbetterin freshcompost (Chung et al., 1988;Nelson et al., 1983). In fresh, undecomposed organicmatter,biological control doesnot occur becauseboth the pathogenandthe biocontrol agent grow as saprophytes.Therefore,R. solani (the pathogen) remainscapableof causingdiseasehere. Prfsumably,synthesis of lytic enzymesinvolved in hyperparasitismof pathogensby Trichodermais repressedin fresh organic Hoitink 1992;Boehm et al., 1993). Sphagnumpeattypically competeswith compostasa sourceof organicmatter in horticulture, Both the microflora andthe organicmatter in peat itself can affect suppressionof soilbornediseases. The literatureon that effect is reviewedbriefly here. Dark, more decomposedsphagnumpeat, harvested from a four foot or greaterdepthin mostpeatbogs,is low in microbial activity andconsistentlyconduciveto Pythium and Phytophthoraroot rots (Hoitink et al., 1991;Boehm and Hoitink, 1992). On the otherhand,light, lessdecomposedsourcesof sphagnumpeat,harvestedfrom nearthe surfaceof peatbogs,havea highermicrobialactivity (FDA activity) andsuppressroot rot. Unfortunately,the suppressive effect of light peat to Pythium root rots is of short duration. (Boehm and Hoitink, 1992; Tahvonen, 1982; Wolffltechel 1988). Light peatsareusedmost effectively X Congreso NacionalAgronomico/ III Congreso deFitopatologia1996 49 ~ - -~ Suppressionalp/ant diseasesby... for short prod~ctioncyc..es(6-10 week cr~ps),suchas in plug andflat mIxesu~edm the ornamentalsmdu.s~. Compostshavelongerl~tmg effec~ (B~ehmandHoItmk, 1992; Boehmet aI, 1993,You and Sivasithamparam,1994). Unfortunately, efficacy varies with the compost,batches of steepagesproduced,cropsand the diseaseunder question. Sackenheim(1993), utilizing plate counting procedures,hasreportedthat aerobicmicroorganismspredomi- As mentionedabove,therateof hydrolysisof FDA predicts suppressivenessof peat mixes and of compostamended substrates to Pythium root rot (Boehm and Hoitink, 1992). As FDA activity in suppressivesubstrates declinesto < 3.2 =B5g FDA hydrolyzed min-l g-1 dry weight mix, the populationof Pythium ultimumincreases, infection takes place and root rot develops. During this collapsein suppressiveness, the compositionof bacterial speciesalso changes(Boehmet al., 1993). A microflora typical of suppressivesoils, which includesPseudomonas spp. and other rod-shapedGram negativebacteriaas the predominantrhizospherecolonizers,is replacedby pleomorphic Gram-positivebacteria (e.g., Arthrobacter) and putativeoligotrophs(Wu et al., 1993). The microflora of the conducive substrateresemblesthat of highly mineralized nichesin soil (Kanazawaand Filip, 1986). . . .. .. . Non-.destructlveanalysIsof soil organicmatter,utIlIZmg FounerTransformInfra Redspectroscopy(FT-IR) and Cross Polariza~ion Magic Angle Spinning -13Carbon NuclearMagnetIcReson~c~Spectro.scopy (CPMAS- 13C NMR), allows charactenzation of biodegradable compof .1 . fr . ( b nents0 SOlorganic actions In ar et al., 1989;Ch~n~d Inbar, 1993). CPMAS - 13CNMR allows quantitative analysisof concentrationsof readily.biodegradablesubstancessuchas "carbohydrates"(hemicellulose,cellulose, etc.) versuslignins and humic substancesin soil organic matter [reviewed in Chenand Inbar, 1993]. In a preliminary report, Wu et al. (1993) reportedthat the "carbohydrates"declineassuppressiveness is lost. During the same time period,bacterialgeneracapableof causingbiological control are replacedby thosethat cannotprovide control. Biocontrol agentsinoculated into the more decomposed substrateare not able to induce sustainedbiological control of Pythiumroot rot. The samephenomenonhasbeen observedfor Phytophthoraroot rot in the field (You and Sivasithamparam,1994). Therefore,biocontrol of these diseasesis determinedby the "carrying capacity" of the substratewhich.regulatesspeciescompositionandactivity and,in turn, the potentialfor sustenance of biological control. nate in steepages.The microflora includesstrainsof bacteria and isolates of fungi already known as biocontrol agents. He developeda numberof enrichmentstrategies, that include nutrients as well as microorganisms,to improve efficacy of the steepages. OUTLOOK . .. '. . Suc.cess m bl~loglcal contr~lof dlse~esWithcomp~sts IS pos~I~le~nly If all factors Involved m the production and utilization of compostsare defined and kept consistent. Most compostsare variable in quality. Therefore, compostedpine bark remainsthe principal compost used for th.eprepar:ationof potting mixes or soils naturally suppresslveto soilborneplantpathogens.Compostedmanures, yard and food wastesar~ steadily gai~ing in popularity, and offer the samepotential(Gorodeckland Hadar, 1990; Grebusetal., 1994;Inbar et al., 1993;Marugget al., 1993; SchUleret al., 1993). 6. COMPOST FOR CONTROL OF FOLIAR DISEASES . .. Durmg the past decade,a senesof projectshavebeen Controlled inoculation of compostswith biocontrol agentsis a procedurethat must be developedon a commercial scaleto induceconsistentlevelsof suppressionto pathogenssuch asR. solani (Hoitink et al., 1991;Phaeet publishedon~hecontrolofplantdiseasesofaboveground plant parts With water extracts,als.oknown as steepages, preparedfrom composts (Weltzhlen, 1992; Yoh.alemet al., 1994). Ste~pagesofte~ are preparedby soakingmature compostsm w~ter (still culture; 1:1, w/w) for 7-10 days. The steepageISfiltered and then sprayedon plants. al., 1990; Grebuset al., 1993). Recently,tree bark was proposedasa food basefor the cultureofbiocontrol agents andasa carrierof suchagentsfor usein agriculturalapplications(Steinmetzand Schl>nbeck,1994).However,this new field of biotechnology,is still in its infancy. Major researchand developmentefforts will needto be directed 50 Control induced by compoststeepageshas also been attributed to systemicacquiredresistance(SAR) induced in plants by microbespresentin the extracts(Weltzhien, 1992). The recentwork by Sackenheim(1993) on grape, however,doesnot supportthis assumption.A factor that hasnot beenevaluatedbut could playa role in efficacy of steepagesis the condition of soil organic matter and the associatedmicroflora in the soil in which treatedplantsare produced. Soils naturally suppressiveto soilborneplant pathogens(e.g., compost-amendedsoils) harbor active populations of biocontrol agents(Boehm et al., 1993). Severalof theserhizobacteriaand fungi can induce protectionto foliar pathogensin the leavesof plants(Ma h ti et al., 1994; Wei et al., 1991). Zhang et al., (19~)or:~ ported that pathogenesis- related proteins were activated . comin roots and shootsof cucumberPlantsProduced m post. Further work may revealthat compostsaffect resistanceof the roots and foliage to diseases.Presentl trol of foliar diseaseswith compostsor steepages iS~i;~y variable. 7. DISEASE SUPPRESSION - FUTURE X CongresoNacional Agronomico / III Congresode Fitopatologia 1996 ~ H.A..J: Hoitink, A.G. Stoneand D.Y. Han toward this approach for disease control. Recycling through composting is being chosen as the preferred strategy for . waste treatment. ThIs also . applIes to farm manures. Fqr this reason, composts are becoming available in greater quantities. Peat, on the other hand, is a limited resource that cannot be recycled. Future opportunities I ra an d con tr II d . d 0 e -In uce d . f for both natu- .lb I t suppressIon 0 SOl orne p an Farrell, J. B. 1993. Fecalpathogencontrol during composting,p. 282300. In: Science and Engineering of Composting: Design, Environmental, Microbiological A. J. Hoitink and H. M. Keener, and Utilization eds. Renaissance Aspects. H. Publications, Worthington, OH. 728 p. Garrett, S. D. 1955. A century of root-dise~e investigation. Ann. Appl. Bioi. 42:211-219. Garrett.,S. D. 1962. Decompositionof cellulosein soil by Rhizoctonia solani Kuhn. Trans. Br. Mycol. Soc. 45:114-120. pathogens appear bright. Grebus, M. E., K. A. Feldman, C. A. Musselman, and H. A. J. Hoitink. 8. ACKNOWLEDGEMENT 1993. Production of biocontrol agent-fortified compostamendedpotting mixes for predictable diseasesuppression. Phytopathology83:1406 (Abstr.). 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