Barrenness and Plant-to-Plant Variability in Maize (Zea mays L.) by Lin Li A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Plant Agriculture Guelph, Ontario, Canada © Lin Li, April, 2013 ABSTRACT BARRNENESS AND PLANT-TO-PLANT VARIABILITY IN MAIZE (ZEA MAYS L.) Lin Li University of Guelph, 2013 Advisor: Professor Elizabeth A. Lee Co-advisor: Professor Steven J. Rothstein This thesis is an investigation of barrenness and plant-to-plant variability (PPV) in ear development of maize (Zea mays L.). A three-year field experiment was conducted on homogenous plants with similar initial plant size, development and uniform spatial patterns in parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102. Physiological processes underlying barrenness were dissected into plant growth through development and dry matter partitioning to the ear at canopy, subpopulation, and primarily, individual plant levels. The growth and development of the ultimately barren individuals were followed from early vegetative stage to physiological maturity (PM) using a non-destructive allometric methodology. Plant-to-plant variability in ear development, related to plant development, was measured destructively from ear initiation to 1 wk after silking and at PM. Results showed that the individual plants exhibited differential responses to their previous growth and development in the two parental inbred lines. No physiological traits in growth and development or dry matter partitioning to the ear during the critical period bracketing silking could characterize individual barren plants. The F1 hybrid was resistant to barrenness even at 160,000 plants ha-1. At 80,000 plants ha-1, the spikelet number per row (SNPR) and spikelet number per ear (SNPE) exhibited less PPV around silking than earlier stages of development. For the three genotypes, PPV in plant morphological traits and ear length was relatively constant throughout development. In addition, the period around the kernel row number (KRN) formation stage was the only timewindow that the PPV in stem volume, representing PPV in above-ground plant dry matter (PDM), affected PPV in SNPR and KRN for the three genotypes, with SNPR being more affected. Although the F1 produced greater PDM at silking and 1 wk after silking, it had shorter ear length and less ear dry matter than the two parental inbred lines at the corresponding stages. When the relationships are elucidated among early ear development, plant growth, leaftip development, and dry matter partitioning to the ear, during the vegetative to silking stages and under stress conditions, then the physiological processes underlying barrenness of the tested inbred lines could be further characterized. ACKNOWLEDGEMENTS First, I would like to thank my advisor Elizabeth A. Lee for directing me to these thesis topics. Her acceptance, wisdom and delicate guidance helped me continue my studies and finish my thesis. I also owe sincere thanks to Dr. Hugh J. Earl for his tremendous time and efforts in teaching me how to develop allometric models, and for discussing and correcting my thesis. Without his help, finishing the thesis would have been impossible. I would also like to thank my previous advisor Matthijs Tollenaar for initiating the thesis project and accepting me as his student. His passion for crop physiology inspires me. My gratitude also goes to Dr. Steven J. Rothstein for being my co-advisor and for his kindness, time, and generosity and for providing me the opportunity to conduct molecular biology research. I am grateful for valuable feedbacks from Drs. Bao-Luo Ma, Barry J. Shelp and Lewis Lukens. I also thank Dr. Clarence J. Swanton for his time and commitment as the internal external examiner. I am thankful to the technical support from Alberto Aguilera, Dr. Weidong Liu, Hugo Gonzalez, Diego Cerrudo and Sabrina Brugière as well as the friendship from fellow graduate students, staff and professors in the Department of Plant Agriculture. Financial support from Syngenta, the Ontario Research Fund, the Ontario Ministry of Agriculture, Food and Rural Affairs, and the Natural Sciences and Engineering Research Council of Canada is also greatly appreciated. I would like to thank my church community for their many prayers and for their spiritual iv support. I also like to thank my parents and family for their unconditional love. Last, I humbly thank my heavenly Father for His love and encouragement, and giving me the wisdom and strength to finish my PhD study and thesis. v TABLE OF CONTENTS ACKNOWLEDGEMENTS ........................................................................................................... iv TABLE OF CONTENTS............................................................................................................... vi LISTS OF TABLES ........................................................................................................................ x LISTS OF FIGURES .................................................................................................................... xii LIST OF ABBREVIATIONS ...................................................................................................... xvi Chapter 1. General Introduction and Literature Review ................................................................. 1 1.1. Definition and Previous Study of Barrenness ................................................................... 1 1.1.1 Low water potential at pollination ............................................................................ 4 1.1.2 Low light at pollination ............................................................................................ 6 1.1.3 Heat stress ................................................................................................................. 7 1.1.4 Other factors causing barrenness ............................................................................ 10 1.1.5 Crowding stress ...................................................................................................... 11 1.1.5.1 Carbon and nitrogen ...................................................................................... 12 1.1.5.2 Plant growth regulator ................................................................................... 16 1.1.5.3 Barrenness of dominated plants under crowding stress ................................ 18 1.1.6 Secondary tools to characterize barrenness ............................................................ 20 1.2. Top-down Approach and Allometric Methodology ........................................................ 22 1.2.1 Top-down approach ................................................................................................ 22 1.2.2 Allometric methodology ......................................................................................... 25 1.3 Plant-to-Plant Variability in Plant and Ear Development ................................................ 26 1.3.1 Maize life cycle and ear development .................................................................... 27 1.3.2 Yield compensation mechanism associated with plant-to-plant variability ........... 30 1.3.3 Measurement of plant-to-plant variability .............................................................. 31 1.4 Research Hypotheses, Objectives, and Significance of the Research ............................. 32 Chapter 2. Ear Development in Relation to Plant Development in Maize (Zea mays L.) ............ 34 vi 2.0 Abstract ............................................................................................................................ 34 2.1 Introduction ...................................................................................................................... 36 2.2 Materials and Methods ..................................................................................................... 40 2.2.1 Genetic materials and experimental design ............................................................ 40 2.2.2 Developmental stages, morphometric and physiological measurements ............... 42 2.2.3 Statistical analyses .................................................................................................. 45 2.3 Results and Discussion ..................................................................................................... 47 2.3.1 General phenological development in terms of thermal time ................................. 47 2.3.2 Ear development in terms of thermal time and leaftip stage. ................................. 50 2.3.3 Above-ground plant dry matter and ear traits ......................................................... 55 2.3.4 Effects of sampling individual plants that were not competitively bordered ......... 76 2.4 Conclusions ...................................................................................................................... 78 Chapter 3. Physiological Characteristics of Barrenness in Maize (Zea mays L.) ......................... 80 3.0 Abstract ............................................................................................................................ 80 3.1 Introduction ...................................................................................................................... 81 3.2 Materials and Methods ..................................................................................................... 84 3.2.1 Genetic materials .................................................................................................... 84 3.2.2 Cultural practices and experimental design ............................................................ 84 3.2.2.1 Field experiment in 2007 .............................................................................. 85 3.2.2.2 Field experiment in 2008 .............................................................................. 86 3.2.2.3 Morphometric methodology and measurement ............................................ 86 3.2.2.4 Destructive samplings ................................................................................... 87 3.2.2.5 Non-destructive measurements ..................................................................... 88 3.2.2.6 Harvest at physiological maturity ................................................................. 90 3.2.3 Selection of allometric models ............................................................................... 90 3.2.3.1 Comparison of models with an intercept and without an intercept for aboveground plant dry matter ............................................................................................. 90 vii 3.2.3.2 Comparison of combined plant density model to individual plant density model for above-ground plant dry matter ................................................................. 92 3.2.3.3 Selection of allometric models for ear dry matter......................................... 94 3.2.4 Data analyses .......................................................................................................... 98 3.2.4.1 Classification of four subpopulations according to barrenness and plant hierarchy.................................................................................................................. 100 3.2.4.2 Frequency distribution of the physiological and morphological traits ....... 101 3.3 Results ............................................................................................................................ 103 3.3.1 Ultimately barren plants at physiological maturity .............................................. 103 3.3.1.1 Occurrence of barrenness ............................................................................ 103 3.3.1.2 The position of ultimately barren plants within a plant population ............ 103 3.3.1.3 Relationships between yield components ................................................... 106 3.3.2 Allometric model development to predict individual barren and non-barren plants ....................................................................................................................................... 106 3.3.2.1 Model comparison for above-ground plant dry matter estimation ............. 106 3.3.2.2 Model comparison for ear dry matter estimation ........................................ 109 3.3.2.3 Allometric model justification .................................................................... 115 3.3.2.4 Allometric model calibration ...................................................................... 123 3.3.2.5 Allometric model evaluation ....................................................................... 124 3.3.3 The history of individual barren plants................................................................. 125 3.3.3.1 Plant growth and development of barren plants.......................................... 125 3.3.3.2 Ear growth and development of barren plants ............................................ 131 3.3.3.3 Efficiency and dry matter partitioning during the critical period bracketing silking ...................................................................................................................... 139 3.3.4 Barren plants and dominated plants of a plant hierarchy ..................................... 148 3.3.4.1 Difference in growth throughout development and partitioning at the subpopulation level ................................................................................................. 149 3.3.4.2 Similarity in growth throughout development and partitioning at the individual plant level ............................................................................................... 153 viii 3.3.5 Barrenness and morphological and physiological traits ....................................... 156 3.4 Discussion ...................................................................................................................... 162 3.4.1 Allometric models to predict individual barren and non-barren plants ................ 162 3.4.1.1 Comparison of allometric models ............................................................... 162 3.4.1.2 Justification of allometric models and methodology .................................. 163 3.4.1.3 Evaluation of allometric models ................................................................. 164 3.4.1.4 Limitation and improvement of allometric models..................................... 166 3.4.2. Characterizing barren plants ................................................................................ 167 3.4.2.1 Approach to study barren plants ................................................................. 168 3.4.2.2 Unpredictability of barrenness in two parental inbred lines ....................... 169 3.4.2.3 Above-ground plant dry matter at physiological maturity of barren plants 171 3.4.2.4 Effects of genotype, plant density and genotype × plant density interaction ................................................................................................................................. 172 3.4.2.5 Barrenness is not totally in relation to dominated plants ............................ 174 3.4.2.6 Barrenness and physiological and morphological traits ............................. 174 3.4.2.7 Research limitation, values and implications .............................................. 176 3.5 Conclusions .................................................................................................................... 178 Chapter 4. General Discussion and Conclusions ........................................................................ 179 4.1 Summary of the Results and Conclusions ...................................................................... 179 4.2 Contributions .................................................................................................................. 181 4.3 Research Limitations and Future Research .................................................................... 182 4.3.1 Effects of sampling individual plants that were not competitively bordered ....... 182 4.3.2. Plant-to-plant variability in ear traits during the kernel row number formation stage at the canopy level ................................................................................................ 183 4.3.3. Relationships among plant growth and leaftip development as well as dry matter partitioning to the ear at the subpopulation level........................................................... 184 REFERENCES ........................................................................................................................... 185 APPENDIXES ............................................................................................................................ 213 ix LISTS OF TABLES Table 2.1. Summary of numbers of sampled plants CG60, CG102 and their F1 CG60 × CG102 from the 6-leaftip (LT) stage until tassel emergence (TE). .............................................. 43 Table 2.2. Thermal time accumulation in growing degree days (GDD) required for the key phenological stages, plant and ear morphological characteristics for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009............ 49 Table 2.3. Spearman’s rank phenotypic correlation coefficients between ear length and spikelet number per row during development including tassel emergence (TE), silking and 1 wk after silking for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. ................................................................................................ 58 Table 2.4. List of phenological stages during which indicated variables that were not normally distributed. ........................................................................................................................ 60 Table 2.5. Above-ground plant dry matter (PDM) at silking (PDMs), 1 wk after silking (PDMs+1) and physiological maturity (PM) (PDMPM), the corresponding ear dry matter (EDM) with husks, cob and shank at silking (EDMs), 1 wk after silking (EDMs+1) and PM (EDMPM) and dry matter partitioning to the ear during each period for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. ...................... 73 Table 2.6. Above-ground plant dry matter (PDMPM), grain yield (GY), harvest index (HI), kernel number per plant (KNP) as well as primary ear KNP at physiological maturity for two inbred lines CG60 and CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. ...................................................................................................................... 74 Table 3.1. Relationships between post-silking leaf area per plant (PSLA) and primary ear leaf area (LAE) for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 in 2008. ................................................................................................................. 91 Table 3.2. Relationships between above-ground plant dry matter (PDM) and morphological variables (i.e., stem volume [SV], maximum primary ear diameter [ED]) at different phenological stages for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 with a combination of plant densities in 2007 and 2008................................... 95 Table 3.3. Relationships between ear dry matter (EDM) and maximum primary ear diameter (ED) at silking and 2 wk after silking for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 with individual plant densities or a combination of different plant densities in 2007 and 2008. ....................................................................... 97 Table 3.4. Comparison of mean residual percentage (i.e., the difference between measured above-ground plant dry matter minus estimated above-ground plant dry matter divided by measured above-ground plant dry matter) between two plant densities within the combined plant density model for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at five destructive sampling stages in 2007. ......................................... 116 x Table 3.5. Comparison of mean residual percentage (i.e., the difference between measured above-ground plant dry matter minus estimated above-ground plant dry matter divided by measured above-ground plant dry matter) among three plant densities within the combined plant density model for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at four destructive sampling stages in 2008. ............................. 117 Table 3.6. Comparison of mean residual percentage (i.e., the difference between measured ear dry matter [EDM] minus estimated EDM divided by measured EDM) within the combined plant density model between two plant densities in 2007 and among three plant densities in 2008 for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at silking and 2 wk after silking. ........................................................................ 119 Table 3.7. Comparison of mean residual percentage (i.e., the difference between measured ear dry matter [EDM] minus estimated EDM divided by measured EDM) of a plant density between combined plant density model and individual plant density model for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at two genotype × sampling stage combinations in 2007 and four genotype × sampling stage combinations in 2008 when there was a significant difference in residual percentage between/among plant densities within a combined plant density model. ................................................. 121 Table 3.8 Threshold values (± standard error) of hyperbolic model fitted to the relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) or HI and ear growth rate during the critical period bracketing silking (EGRs) for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 in 2007 and 2008 grown at various plant densities. ............................................................ 144 Table 3.9. The minimum (Min) and maximum (Max) harvest index (HI) of non-barren plants when non-barren plants had similar values with barren plants (i.e., final grain yield per plant = 0 g) in plant growth rate during the critical period bracketing silking (PGRs), or ear growth rate during the period bracketing silking (EGRs), or .................................... 146 Table 3.10. Comparisons among different subpopulations in above-ground plant dry matter (PDM), ear dry matter (EDM) throughout development, plant (PGRs) and ear growth rate during the critical period bracketing silking (EGRs), and partitioning index (i.e., EGRs/PGRs) for two parental inbred lines CG60 and CG102 grown at different plant densities in 2007 and 2008.............................................................................................. 150 Table 3.11. Summary of similarities in combination of above-ground plant dry matter (PDM) and leaftip (LT) stage, flowering dynamics (anthesis to silking interval (ASI) and growing degree days from planting to silking (GDDsilking) and the combination of ear dry matter around silking (EDMs) and flowering dynamics among different subpopulations for two parental inbred lines CG60 and CG102 grown at different plant densities in 2007 and 2008. ......................................................................................................................... 155 xi LISTS OF FIGURES Figure 1.1. Schematic of the developmental progression of meristem identities during ear development (Vollbrecht and Schmidt, 2009). ................................................................. 28 Figure 2.1. The linear relationships between leaftip (LT) number and the growing degree days (GDD) accumulated from the day after planting in two parental inbred lines CG60 and CG102 and their F1 hybrid CG60 × CG102 grown under 80,000 plants ha-1 in 2009. .... 48 Figure 2.2. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of inbred line CG60 grown under 80,000 plants ha-1 in 2009. ...................... 51 Figure 2.3. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of inbred line CG102 grown under 80,000 plants ha-1 in 2009. .................... 52 Figure 2.4. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of the F1 CG60 × CG102 grown under 80,000 plants ha-1 in 2009. .............. 53 Figure 2.5. Frequency distributions of kernel row number (KRN) in inbred lines CG60, CG102 and the F1 hybrid CG60 × CG102 grown under 80,000 plants ha-1 in 2009. ................... 54 Figure 2.6. Mean ear length and standard deviation (SD) of ear length in sampled inbred lines CG60, CG102 and their F1 CG60 × CG102 plants during different phenological stages (PS) grown under 80,000 plants ha-1 in 2009. .................................................................. 56 Figure 2.7. Coefficients of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ................................................................... 61 Figure 2.8. Coefficients of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled inbred line CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ................................................................... 62 Figure 2.9. Coefficient of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled F1 CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009............................................................................ 63 Figure 2.10. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ...................................................................................................................... 64 Figure 2.11. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ............................................ 65 Figure 2.12. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for inbred line CG102 xii during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ...................................................................................................................... 66 Figure 2.13. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for inbred line CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009..................................... 67 Figure 2.14. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for F1 hybrid CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ............................................................................................................ 68 Figure 2.15. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for F1 hybrid CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. ......................... 69 Figure 2.16. The relationship between plant-to-plant variability in stem volume measured as coefficient of variation (CV) and plant-to-plant variability in spikelet number per row (SNPR) and maximum kernel row number (KRNmax) from kernel row number (KRN) formation to 1 wk after silking and at physiological maturity for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 planted at 80,000 plants ha-1 in 2009. ........................................................................................................................................... 71 Figure 2.17. Individual values of above-ground plant dry matter at silking (x-axis) and 1 wk after silking (PDMs+1) (primary y-axis, open symbols) and individual values of aboveground plant dry matter at physiological maturity (PM) (x-axis) and its corresponding grain yield (secondary y-axis, filled symbols) for inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown at 80,000 plants ha-1 in 2009. ........................................... 75 Figure 3.1. Frequency distributions of grain yield (GY)(primary y-axis), and the relationship between kernel number per plant (KNP) (secondary y-axis) and GY in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. .................................................................................... 104 Figure 3.2. Frequency distributions of above-ground plant dry matter at physiological maturity (PDMPM) (primary y-axis), and the relationship between harvest index (HI) (i.e., ratio between grain yield and PDMPM) (secondary y-axis) and PDMPM in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008.............................................................................................. 105 Figure 3.3. Selective comparison of allometric models with an intercept and without an intercept for F1 hybrid CG60 × CG102 at 160,000 plants ha-1 at the 9-leaftip (LT) stage and inbred CG60 at 120,000 plants ha-1 at 2 wk after silking in 2007. ............................................ 107 Figure 3.4. Selective comparison of allometric models with an intercept and without an intercept for inbred CG102 at 160,000 plants ha-1 at the 10-leaftip (LT) stage and inbred CG60 at 160,000 plants ha-1 at 2 wk after silking in 2008. ........................................................... 110 xiii Figure 3.5. Selected comparisons of allometric models with a power function and with an exponential function for the F1 hybrid CG60 × CG102 at 160,000 plants ha-1 at silking and inbred CG60 at 120,000 plants ha-1 at 2 wk after silking in 2007. .......................... 112 Figure 3.6. Selected comparisons of allometric models with a power function and with an exponential function for inbred CG102 at 80,000 plants ha-1 at 2 wk after silking and F1 hybrid CG60 × CG102 at 120,000 plants ha-1 at 2 wk after silking in 2008. ................. 114 Figure 3.7. Selected presentation of the relationship between measured above-ground plant dry matter (PDM) in destructive sampling areas using combined plant density models and the corresponding predicted PDM for inbred CG102 at 11-leaftip (LT) stage and inbred CG60 at silking in 2007 and CG60 at 16-LT stage and the F1 hybrid CG60 × CG102 at 2 wk after silking in 2008. ................................................................................................. 118 Figure 3.8. Presentation of relationship between measured ear dry matter (EDM) in destructive sampling areas using combined plant density model and the corresponding predicted EDM for F1 hybrid CG60 × CG102 at silking, and inbred CG60 at 2 wk after silking in 2007, and CG60 at silking, and CG102 at 2 wk after silking in 2008. ........................... 122 Figure 3.9. Estimated above-ground plant dry matter (PDM) for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, and average individual plants from early vegetative stage to physiological maturity for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. ................................................... 126 Figure 3.10. Estimated above-ground plant dry matter (PDM) for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, and average individual plants from early vegetative stage to physiological maturity for one of the parental inbred lines CG60 and its F1 hybrid CG60 × CG102 at different plant densities in 2008. ........................... 127 Figure 3.11. The leaftip stage development of individual barren plants (i.e., grain yield per plant = 0 g) and average individual plants for two parental inbred lines CG60 and CG102 and their F1 hybrid CG60 × CG102 at different plant densities in 2007 and 2008. .............. 128 Figure 3.12. The initial ear dry matter (EDM) around silking, and the subsequent growth I of individual ears between silking and approximately 2 wk after silking, the subsequent growth II between 2 wk after silking and physiological maturity as well as the corresponding final grain yield (GY) at physiological maturity for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. ............................... 132 Figure 3.13. The initial ear dry matter (EDM) around silking, and the subsequent growth I of individual ears between silking and approximately 2 wk after silking, the subsequent growth II between 2 wk after silking and physiological maturity as well as the corresponding final grain yield (GY) at physiological maturity for one of the parental inbred lines, CG60, and its F1 hybrid CG60 × CG102 at different plant densities in 2008. ......................................................................................................................................... 133 Figure 3.14. Relationship between ear dry matter at silking (EDMs) and anthesis to silking interval (ASI) for ultimately barren and non-barren ears, and the relationship between xiv EDMs and growing degree days from planting to silking (GDDsilking) for barren and nonbarren ears for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. ................................................................................................................ 137 Figure 3.15. Relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1), and between HI and ear growth rate after silking (EGRs) in g plant-1 GDD-1 for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 across two plant densities in 2007. ............................................................................................ 140 Figure 3.16. Relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1), and between HI and ear growth rate after silking (EGRs) in g plant-1 GDD-1 for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 across three plant densities in 2008. ............................................................................... 142 Figure 3.17. Relationships between estimated ear growth rate during the critical period bracketing silking (EGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1) and estimated plant growth rate during the critical period bracketing silking (PGRs) in g plant-1 GDD-1 of parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. .................... 147 Figure 3.18. Relationship between above-ground plant dry matter at physiological maturity (PDMPM) and maximum plant height (MaxPH) as well as the frequency distributions of the ratio between PDMPM and MaxPH for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. ......................................................................................................................................... 157 xv LIST OF ABBREVIATIONS ASI ––– anthesis to silking interval Bd plants ––– barren and dominated plants BID plants ––– barren plants that belong to the intermediate and dominant plants C ––– Carbon CV ––– coefficient of variation d plants ––– dominated plants D plants ––– dominant plants ED ––– maximum primary ear diameter EDM ––– ear dry matter EDMPM ––– ear dry matter at physiological maturity EDMs ––– ear dry matter at silking EDMs+1 ––– ear dry matter at 1 wk after silking EDMs+2 ––– ear dry matter at 2 wk after silking EGRs ––– ear growth rate during the critical period bracketing silking GDD ––– growing degree days GDDsilking ––– growing degree days from planting to silking GY ––– grain yield HI ––– harvest index KNP ––– kernel number per plant KRN ––– kernel row number KRNmax ––– maximum kernel row number LAE ––– primary ear leaf area xvi LT ––– leaftip MaxPH ––– maximum plant height N ––– nitrogen NBd ––– non-barren dominated plants NBID ––– non-barren plants that belong to the intermediate and dominant plants NT & NS ––– no anther and silk emergence PDM ––– above-ground plant dry matter PDMPM ––– above-ground plant dry matter at physiological maturity PDMs ––– above-ground plant dry matter at silking PDMs+1 ––– above-ground plant dry matter at 1 wk after silking PDMs+2 ––– above-ground plant dry matter at 2 wk after silking PGRs ––– plant growth rate during the critical period bracketing silking PH ––– plant height PM ––– physiological maturity PPV ––– plant-to-plant variability PSLA ––– post-silking leaf area per plant RMSE ––– root mean squared error RP ––– residual percentage SD ––– standard deviation SDb ––– the maximum width of basal stem diameter SD2 ––– the maximum width of stem diameter 2 cm above the ground level SNPE ––– spikelet number per ear SNPR ––– spikelet number per row xvii SV ––– stem volume SVmax ––– stem volume derived from the maximum width of stem diameter 2 cm above the ground level TE ––– tassel emergence V stage ––– fully emerged leaves with visible collars xviii Chapter 1. General Introduction and Literature Review 1.1. Definition and Previous Study of Barrenness Barrenness in maize (Zea mays L.) has been defined according to kernel number per plant (KNP), grain yield (GY) and the absence of a visible ear (Buren et al., 1974; Olness et al., 1990; Vega et al., 2001a; Sangoi et al., 2002; Boomsma, 2009). It has been manipulated or characterized in different research topics using various approaches. Section 1.1. will summarize previous studies according to research topics and approaches. Genotype, agronomic practice and the combination of genotype and agronomic practice affect yield performance. This yield performance includes incidences of barrenness that have been evaluated at the canopy level. Incidence of barrenness is affected by genotype × plant density, hybrid × nitrogen (N), plant density × N, and hybrid × plant density × N (Sass and Loeffel, 1959; Genter and Camper, 1973; Sangoi et al., 2002; Subedi et al., 2006), as well as tillage × N × hybrid (Olness et al., 1990). In general, parental inbred lines and their F1 hybrid respond differentially to plant density in terms of incidences of barrenness (Sass and Loeffel, 1959). Prolificacy is defined as the tendency to produce more than one ear per plant at normal plant densities (Bjarnason, 1994). Prolific germplasms and also more recent hybrids with increased plant growth rate during the critical period bracketing silking (PGRs), reduce barrenness at high plant density (Duvick, 1974; Tollenaar et al., 1992). The incidence of barrenness increases with an increase in plant density (Stringfield and Thatcher, 1947; Woolley et al., 1962; Genter and Camper, 1973; Daynard and Muldoon, 1983; 1 Hashemi-Dezfouli and Herbert, 1992; Sangoi et al., 2002). Zero N fertilization results in the highest barrenness (Subedi et al., 2006; Boomsma, 2009). The incidence of barrenness decreases when the intensity of tillage increases (Olness et al., 1990). Spacing patterns, which are the number of plants per hill, do not significantly affect barrenness (Stringfield and Thatcher, 1947). Barrenness is more affected by plant density than by soil N level and hybrid (Lang et al., 1956). Tillage and application of N fertilizer reduce barrenness by promoting root proliferation and development (Olness et al., 1990). These studies help to examine the genetic and physiological mechanisms for yield improvement, as well as to determine the optimum genotype and agronomic practice at the canopy level; however the exact physiological mechanism behind barrenness is not addressed. Whole plant and leaf photosynthesis have been measured to characterize barren hybrid plants (Moss, 1962; Thiagarajah et al., 1981). Barren plants were induced by preventing fertilization or removing ears and were compared to non-barren plants. Barren plants tend to exhibit less post-silking plant photosynthesis under field conditions and less leaf photosynthesis in plant growth chambers. Moreover, the degree of decrease in plant photosynthesis of barren plants as a proportion of non-barren plants depends on the hybrid. For example, the degree of decrease in net CO2 assimilation of barren plants is higher for an early cultivar until 5 d after ear removal, after which a late cultivar exhibits higher degree of loss (Moss, 1962). The rate of reduction in leaf photosynthesis of barren plants, as a proportion of the corresponding leaf of non-barren plants grown under the same photoperiod, depends on leaf age. For example, a leaf of barren plant (leaf 13), which is one or two nodes above the ear and acts as a major assimilate source for kernel development, has a relatively slower rate of reduction in leaf photosynthetic 2 rate, compared to the other two lower leaves (leaves 9 and 11) (Thiagarajah et al., 1981). With the prevention of pollination, barren plants do not consistently exhibit purple leaves and stems in the two experiments (Moss, 1962; Thiagarajah et al., 1981). Measuring plant and leaf photosynthesis is a good way to characterize barrenness non-destructively; however, if barrenness or GY is investigated under field conditions, measuring canopy photosynthesis is neither an easy nor a complete approach without considering dry matter partitioning (Poorter et al., 1990). In addition, it is difficult to obtain meaningful leaf photosynthesis data under field conditions, especially at high plant density, and available data should be interpreted with caution (Tollenaar and Lee, 2010). Also, it is possible to induce barrenness by preventing fertilization or removing ears, enabling the study of leaf senescence (Christensen et al., 1981; Crafts-Brandner et al., 1984; Crafts-Brandner and Poneleit, 1987; Rajcan and Tollenaar, 1999). This provides the evidence that genotypes are consistent in responses during the grain-filling period, which displays lower net photosynthesis and dry matter accumulation and higher leaf carbohydrate content. However, there are genotype-dependent responses of plant and leaf N status to the same treatments. In summary, researchers can manipulate barrenness instead of allowing barrenness to occur naturally, and use this as a tool for related physiological mechanisms. Under field conditions, individual plants can experience abiotic stress, differential extinction of red and farred light and variations in plant emergence, and ultimately they could become barren. Physiological mechanisms of maize barrenness have been studied under various abiotic stresses such as low water potential during pollination (Westgate and Boyer, 1985, 1986; Schussler and Westgate, 1991; Bassetti and Westgate, 1993; Boyer and Westgate, 2004) and low light (Schussler and Westgate, 1991), heat (Commuri and Jones, 2001; Cicchino et al., 2010) and 3 drought (Bolaños and Edmeades, 1993; Edmeades et al., 1993). The common research approach is to study the effects of stress on source strength and sink strength together, or on sink strength alone. Studies however differ in when, how long and how to implement stress, as well as the selected genotype. 1.1.1 Low water potential at pollination Complete (100%) inhibition of leaf photosynthesis at pollination by low water potential causes ovary abortion and complete barrenness. Barrenness, caused by low water potential at pollination, is related to a reduced assimilate supply to ovaries in terms of source strength (Schussler and Westgate, 1991; Mäkelä et al., 2005). Low water potential does not reduce ovary sucrose concentration at pollination compared to normal conditions (Schussler and Westgate, 1991; Zinselmeier et al., 1995). Instead, a reduced assimilate supply, which is the diminution of rate of sugar (mainly sucrose) transport to ovaries, is the major cause of complete ovary abortion, irrespective of carbon (C) and N assimilate reserves at pollination (Westgate and Boyer, 1985; Schussler and Westgate, 1994). In terms of sink strength, barrenness is related to a reduced capacity for the ovaries to absorb sucrose (Schussler and Westgate, 1991; Mäkelä et al., 2005). Low water potential decreases sink strength by inhibiting activities of insoluble (cell wall) and soluble (vacuolar) acid invertases as well as downregulating acid invertase genes (cell wall invertase 1, cell wall invertase 2, soluble invertase 2) (Zinselmeier et al., 1995; McLaughlin and Boyer, 2004a). Insoluble and soluble acid invertases hydrolyze sucrose into glucose and fructose, and these invertases are the dominant enzymes regulating sucrose metabolism during 4 silk emergence, pollination and early kernel growth (Zinselmeier et al., 1995). Insoluble acid invertases are localized at the apoplast and throughout the pedicel (McLaughlin and Boyer, 2004b). Sucrose is unloaded passively from the sieve tube into the apoplast of the pedicel parenchyma cell of developing maize ovaries. The hydrolytic function of the enzyme establishes sink strength by maintaining a favorable sucrose concentration gradient between the two points, which facilitates continued sucrose unloading from the phloem. In addition, the hydrolytic function of the invertases inverts sucrose to hexoses for uptake by the ovaries, and prevents sucrose reloading into the phloem (Eschrich, 1980). Soluble invertases are located at the nucellus (McLaughlin and Boyer, 2004b). Soluble invertases adjust sink strength by affecting the capacity to utilize the imported sucrose, and soluble invertases could hydrolyze the rest of the sucrose that escapes from hydrolysis in the pedicel apoplast after they enter the nucellar cells (Zinselmeier et al., 1995; McLaughlin and Boyer, 2004b). Low water potential inhibits the activity of both insoluble and soluble acid invertases and limits the hydrolysis of sucrose into glucose and fructose, which results in sucrose accumulation in ovary at pollination (Schussler and Westgate, 1991; Zinselmeier et al., 1995). Low water potential also changes ovary C status and metabolism between silk emergence and pollination, and low water potential leads to ovary abortion. Both starch and glucose are abundant in the ovary at pollination (McLaughlin and Boyer, 2004b). Ovary starch serves as a buffering reserve C and can be consumed to release glucose in order to sustain glucose for a short time (Zinselmeier et al., 1999; McLaughlin and Boyer, 2004a). Low water potential triggers starch breakdown in order to supply glucose. Starch is completely depleted at pollination, which characterizes ovaries destined to abort at low water potential. Glucose 5 depletion follows starch depletion (McLaughlin and Boyer, 2004b). When ovary glucose is consumed, genes (ribosome inactivating protein 2 and phospholipase D1) for senescence are activated and plasma membranes lose their integrity, which probably leads to the irreversible ovary abortion (McLaughlin and Boyer, 2004a). In summary, barrenness or complete ovary abortion by low water potential at pollination involves sequential events of C (sucrose) transport diminution, inhibition of acid invertase activity, starch breakdown and depletion, the onset of senescence, ovary abortion, and inhibition of dry matter accumulation in the ovary and ear (Westgate and Boyer, 1985; Schussler and Westgate, 1991; McLaughlin and Boyer, 2004a; Mäkelä et al., 2005). 1.1.2 Low light at pollination The physiological mechanism behind barrenness under low light at pollination could be the same as or different from that of low water potential at pollination. Both stresses cause complete inhibition of leaf photosynthesis at pollination and deplete C supply to the developing florets and ear (Schussler and Westgate, 1991; Mäkelä et al., 2005; Hiyane et al., 2010). Effects of low light on sink strength could be the same as or different from the low water potential at pollination. Low light caused by shade at pollination reduces sink strength via the same physiological mechanism as low water potential at pollination (Mäkelä et al., 2005; Hiyane et al., 2010). Under shade stress, insoluble and soluble acid invertase activities in the ovary are inhibited, followed by starch depletion to supply glucose, and glucose depletion in ovaries. However, Schussler and Westgate (1991) indicate no change in sink strength under low light stress. Low light stress does not change the ovary glucose concentration at pollination, but 6 increases the glucose concentration after pollination. It is unclear whydifferent mechanisms are required for the impact of low light stress on sink strength. Besides stress in water and light resources, super-optimal temperature can lead to barrenness. 1.1.3 Heat stress A common physiological mechanism behind barrenness under heat stress is reduction in sink strength (Commuri and Jones, 2001; Cicchino et al., 2010). Heat stress applied from the stage of 11 fully emerged leaves with visible collars (V-stage, V11) to anthesis under field conditions results in barrenness. The stress reduces above-ground plant dry matter (PDM) during and after the stress application period. However, the dry matter partitioning to the ear is only reduced during the stress application period. Most heated plants exhibit zero ear growth rate during the heat stress application period. The dry matter partitioning to the ear is unaffected as long as the stress is removed (Cicchino et al., 2010). In the study of Cicchino et al. (2010), the exact mechanism behind barrenness was unknown, but they reported that heat stress can affect GY by reducing KNP without changing kernel weight. In contrast, Commuri and Jones (2001) found that heat stress during endosperm cell division of kernel development causes barrenness by affecting kernel weight and kernel size. Commuri and Jones (2001) investigated the effect of heat stress on kernel weight and kernel size during endosperm cell division of kernel development. Heat stress during the period reduces kernel sink capacity for hybrids and inbred lines and can cause barrenness. The kernel sink capacity is the intrinsic ability of the endosperm to attract assimilates, and is mainly a 7 function of the number of endosperm cells and starch granules within them (Jones et al., 1985, 1996; Commuri and Jones, 2001), which both determine the number of potential sites for starch deposition and kernel dry matter accumulation as well as GY (Jones et al., 1984, 1985). The kernel sink capacity is established during the endosperm cell division period (Jones et al., 1996). The heat stress during this period has more detrimental effects on GY than during the subsequent linear grain filling period (Jones et al., 1984). Heat stress causes 100% kernel abortion for an inbred line under in vitro and field conditions through reducing endosperm cell numbers and starch granule numbers (Commuri and Jones, 2001). The reduced starch granule numbers disturb and reduce kernel dry matter accumulation and cause kernel abortion (Commuri and Jones, 2001). However, the heat stress-induced reduction in kernel sink capacity is not related to the ability of kernel to take up sucrose (Cheikh and Jones, 1995). Heat stress during the endosperm cell division period does not limit C supply to the kernel nor limit C uptake by the kernel during the period. However, heat stress does change C utilization and partitioning among sucrose, hexose and starch, and disrupt starch biosynthesis, resulting in less starch (dry matter) accumulation per kernel (Cheikh and Jones, 1995). Compelling evidences showed that cytokinins regulate kernel sink capacity under heat stress (Cheikh and Jones, 1994; Jones and Setter, 2000). Disruption of kernel development under heat stress involves a precipitous decline in endogenous cytokinin levels of developing kernels (Cheikh and Jones, 1994). An important mechanism underlying lower cytokinin levels in heat-stressed kernels is the degradation of cytokinins as a result of increased cytokinin oxidase activity (Brugière et al., 2003). Cytokinin 8 oxidase irreversibly degradates cytokinins with unsaturated isoprenoid side chains in plants (Brugière et al., 2003). It cleaves the N6 side chain of the cytokinins and causes cytokinins to lose all their biological activity (Jones and Setter, 2000). Heat stress increases ABA concentration of stressed kernels under in vitro and field conditions (Cheikh and Jones, 1994; Brugière et al., 2003). The increased ABA concentration triggers a premature increase in cytokinin oxidase transcript and activity. The increased level of cytokinin oxidase transcript before the natural cytokinin peak (approximately 10 d after anthesis) could prevent cytokinin accumulation, reduce peak intensity or level, and disrupt kernel development (Cheikh and Jones, 1994; Brugière et al., 2003). Cytokinins determine kernel sink capacity probably by regulating endosperm cell division and processes associated with amyloplast biosynthesis (Cheikh and Jones, 1994; Brugière et al., 2003). In addition, because of increased ABA levels and dramatically decreased cytokinin levels, heat stress shifts the hormone balance between ABA and cytokinins (Cheikh and Jones, 1994). There is a negative correlation between ABA levels and cytokinin levels in non-stressed kernels, whereas there is no correlation between levels of the two plant growth regulators in kernels exposed to heat stress (Cheikh and Jones, 1994). Therefore, an imbalance of plant growth regulators and a reduction in endogenous cytokinin level within kernels is the major mechanism disturbing kernel development under heat stress. Most of studies mentioned above used hybrids or inbreds. The use of other genotypes suggested the existence of a different physiological mechanism underlying barrenness. When genotypes were chosen from eight cycles of recurrent selection for drought tolerance, with major genetic differences in GY and differences in anthesis to silking interval (ASI), the lower incidence of barrenness in the advanced selection cycles is 9 associated with a genetically-controlled increase in dry matter partitioning to the ear and spikelet in high plant density, drought and wet conditions (Bolaños and Edmeades, 1993; Edmeades et al., 1993). The genotypic differences do not result in significant changes in PDM at various growth stages, and plant growth rate around silking (Bolaños and Edmeades, 1993; Edmeades et al., 1993). Therefore, the physiological mechanisms behind barrenness or GY could be genotype dependent. In summary, previous studies have contributed to our understanding of using the source and sink approach to study barrenness or GY. However, the mechanisms behind barrenness are complicated and depend on physiological factors such as C supply, endogenous levels of plant growth regulators, stage of development, and the stressor, as well as genetic factors and their interactions. 1.1.4 Other factors causing barrenness In addition, other factors could cause barrenness. Barrenness happens when initial shade avoidance response is combined with subsequent water and nutrition stress (Page et al., 2011). Barrenness is also associated with temporal variation in terms of plant emergence. Late-emerged within-row plants tend to be barren and have a higher percentage of barrenness than earlieremerged plants (Nafziger et al., 1991; Liu et al., 2004a). Moreover, the percentage of barrenness tends to increase in late-emerged plants as the proportion of within-row early-emerged plants increases (Nafziger et al., 1991). With one exception, previous studies on barrenness have not utilized individual plants with similar initial growth and development; Westgate and Boyer (1985) chose individual plants with similar growth under growth chamber conditions. 10 The studies mentioned above used various research approaches. In terms of organizational level, most studies investigated barrenness and GY at the canopy level, or at both canopy and individual plant levels (Cicchino et al., 2010; Page et al., 2011). In order to manipulate environment and resources, the approaches included termination of light (Schussler and Westgate, 1991) and water supply (Bolaños and Edmeades, 1993; Edmeades et al., 1993), delicate control of plant water status (Boyer and Westgate, 2004), the increasing temperature in a study region or around kernels (Commuri and Jones, 2001; Cicchino et al., 2010), stimulating low red/far red ratio by the use of turfgrass (Page et al., 2011), and changing planting date and pattern (Nafziger et al., 1991; Liu et al., 2004a). Instead of specific environmental quo, Vega et al. (2001) compressed all the factors and created variations in resource availability using different plant densities. The time windows for treatment implementation focused on a growth stage or a period such as emergence, pollination, the critical period bracketing silking and early kernel development. The above studies did follow individual plants during their life cycle. 1.1.5 Crowding stress Crowding stress above optimum plant density intensifies intra-specific competition for light, available soil nutrients and water (Connor et al., 2011). Barrenness under crowding stress is mainly caused by shortages of C, N, some plant growth regulators and other resources. The physiological mechanisms behind barrenness under crowding stress are rarely reviewed. In crowding stress section, barrenness is dissected from canopy to plant hierarchy to dominated (d) plant levels. 11 1.1.5.1 Carbon and nitrogen At the canopy level, crowding stress causes a shortage of available photosynthetically active light and nutrients. Each individual plant within a crowding population can be considered to be an isolated plant from seed emergence until the leaf area index approaches 1. When the leaf area index is larger than 1, intra-specific competition for light within a canopy begins (TetioKagho and Gardner, 1988; Ballaré, 1999; Page et al., 2010a). When intra-specific competition starts, supra-optimal plant density reduces leaf area per plant from the vegetative stage to the critical period bracketing silking (Boomsma et al., 2009; Page et al., 2010a), radiation interception per plant (Pagano and Maddonni, 2007), individual PDM from the early vegetative stage to physiological maturity (PM) (Tetio-Kagho and Gardner, 1988; Maddonni and Otegui, 2004), and plant growth rate (Pagano and Maddonni, 2007; Boomsma et al., 2009). Competition for light under crowding stress causes maize plants to invest in more structural tissue with low N concentration relative to that of leaves, thereby reducing the N concentration of shoots (Lemaire et al., 2007, Lemaire and Gastal, 2009). Crowding stress also reduces chlorophyll content and leaf N concentration from the V9 to the R5 stage, as well as grain N concentrations (Scott et al., 2006; Pagano and Maddonni, 2007; Boomsma et al., 2009). Instead of direct competition for available resource under crowding stress, another mechanism known as ‘growth alteration’ regulates plant resource requirement and changes resource use efficiency (Clay et al., 2009). For example, when increasing plant density from 74,500 plants ha-1 to 149,000 plants ha-1 using a commercial corn hybrid, the crowding stress reduces the red/near-infrared ratio by 20% at the V12 stage and reduces photosynthetic capacity while increasing both N and water use efficiency (Clay et al., 2009). The photosynthetic 12 capacity is reduced by downregulating C metabolism genes such as phosphoenolpyruvate carboxykinase, phosphoenolpyruvate carboxylase, and pyruvate orthophosphate dikinase. Although ‘growth alteration’ and direct competition for resources are two different mechanisms regulating plant competition under crowding stress, they are similar in phenotypic responses, including reduced leaf area per plant, reduced plant chlorophyll content at V12, reduced grain N concentrations and GY per plant (Clay et al., 2009). The lower plant chlorophyll and grain N concentrations are not due to increased N stress (Clay et al., 2009). Therefore, both mechanisms under crowding stress reduce C supply and N nutrition at the canopy level. The reduced C and N resource availability at the canopy level cannot represent resource sharing among different plant hierarchies and individual plants. Previous studies on plant hierarchy give deeper insights on resource sharing of C, N and plant growth regulators among different plant hierarchies under crowding stress (Maddonni and Otegui, 2004; Lemaire et al., 2005; Pagano and Maddonni, 2007; Boomsma et al., 2009; Caviglia and Melchiori, 2011; Mayer et al., 2102). Plant hierarchy is defined as individual plants from a population of plants being ranked in ascending order and assigned to different strata. In most maize studies, individual plants are ranked according to the PDM at PM (PDMPM), the plants in the uppermost 1/3 of the PDMPM rank position are termed dominant (D) plants in the population, while plants in the lowermost 1/3 of the PDMPM rank position are termed d plants (Maddonni and Otegui, 2004). For individual plants within a homogenous genotype, with similar initial plant growth and development, plant hierarchies are established at early stage of development, such as V4 and maintained until PM (Maddonni and Otegui, 2004). 13 Individual plants within a plant population exhibit hierarchical C and N resource sharing (Lemaire and Gastal, 2009), due to the unequal competition in maize monoculture (Maddonni and Otegui, 2004). For maize, the d plants have lower pre-silking leaf area per plant and shorter plant height (PH), and intercept less radiation per unit leaf area than D plants at the same date (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007; Boomsma, 2009; Rossini et al., 2011). Both light competition and photomorphogenetic adaptations lead to different allocations of N resource among individual plants. The hierarchical N resource sharing of an individual plant is determined by its hierarchical position for light interception (Lemaire et al., 2005; Lemaire and Gastal, 2009). In addition, both light competition and subsequent morphological changes among individual plants lead to different shoot N concentrations. For example, Lemaire et al. (2005) used model crop alfalfa (Medicago sativa L.) to develop plant hierarchy according to PH and light interception. The 20% shortest plants have lower N concentrations than the 20% tallest plants at the same date. According to the idea developed by Lemaire et al. (2005), the d plants of maize should have a slightly lower shoot N concentration than D plants at the same date. Beside the hierarchical N resource sharing driving by light interception, the N nutrition of different plant hierarchies has to consider the intrinsic N uptake capacity. Dominated and D plants exhibit different or similar intrinsic N uptake capacities in maize, depending on the genotype (Caviglia and Melchiori, 2011; Mayer et al., 2102). The d plants exhibit a greater response to N supply than D plants within a population with a large difference in PDMPM between d and D plants. This population mimics a crowded population with a high intra-specific competition (Maddonni and Otegui, 2004; Caviglia and Melchiori, 2011). For individual plants with similar initial growth and development, Mayer et al. (2012) reported that 14 increased N supply allows higher growth recovery in terms of PGRs for d plants than for D plants in one of the hybrids tested. The two plant hierarchies exhibit similar growth recovery in the other hybrid tested. In summary, regardless of the intrinsic N uptake capacity, d plants have lower N resource sharing and should have below optimum shoot N concentrations than D plants when plant hierarchies are established. Regardless of plant density and N supply, d plants have lower leaf area per plant at silking, lower leaf N concentrations at pre-silking (V9, V14) and postsilking (R1, R3 and R5) than D plants (Pagano and Maddonni, 2007; Boomsma, 2009). Therefore, d plants are more limited in N nutrition than D plants since the establishment of plant hierarchy. The suboptimal N status in d plants reduces their kernel set. Shortage of N regulates kernel set in four ways. First, low N reduces KNP by affecting C assimilation (Uhart and Andrade, 1995a). Nitrogen plays a role in establishing and maintaining plant photosynthetic capacity (Below, 2002). Low N decreases C assimilation by reducing leaf area per plant through a decline in leaf area expansion (Muchow, 1988), and by reducing leaf area duration, light interception (Lemcoff and Loomis, 1986; Uhart and Andrade, 1995b), leaf chlorophyll content, leaf absorption and leaf CO2 exchange rate from pre-silking to the critical period bracketing silking (Uhart and Andrade, 1995b; Echarte et al., 2008), pre-silking PGR and PGRs (McCullough et al., 1994; Uhart and Andrade, 1995b; D’Andrea et al., 2009). Second, a limiting N supply to the plants during the critical period bracketing silking can alter the relative sink strength of various organs (Paponov et al., 2005). For example, low N supply to the plants at 4 d before silking under field conditions reduces the sink strength of cobs, and the effects are genotype dependent (Paponov et al., 2005). Also, low N application at 15 planting or over the life cycle can reduce the sink strength during the critical period bracketing silking and the effect depends on genotype, the level of radiation and N stress (Uhart and Andrade, 1995b; Paponov and Engels, 2005; D’Andrea et al., 2009). Third, the N supply to the ear directly controls the capacity of kernels to utilize C, as determined by in vivo and stem infusion studies (Cazetta et al., 1999; Below et al., 2000). Nitrogen supply determines the kernel sink capacity and promotes activity of enzymes involved in sucrose and N uptake, including insoluble and soluble invertases, sucrose synthase and aspartate transaminase (Cazetta et al., 1999; Below et al., 2000). Limited N supply to the ear causes kernel abortion and reduced dry matter accumulation of kernels. Fouth, N supply in both quantity and quality can alter the metabolism of plant growth regulators, which will be discussed in section 1.1.5.2 (Drew et al., 1989; Takei et al., 2001; Engels et al., 2012). 1.1.5.2 Plant growth regulator Crowding stress results in less endogenous cytokinin and ethylene production. Plant growth regulators regulate dry matter partitioning, and the dry matter partitioning to the ear is reduced under crowding stress at the canopy level (Edmeades and Daynard, 1979a; Engels et al., 2012). Shade-induced imbalance of plant growth regulators within normal and aborted kernels has been investigated. However, whether different plant growth regulators are the causes or the effects of kernel abortion cannot be concluded (Reed and Singletary, 1989; Cheng and Lur, 1996; Setter et al., 2001). A shortage of N reduces cytokinin and their ethylene production and their endogenous concentrations. Both plant growth regulators possibly affect GY or/and dry matter 16 partitioning to the ear (Drew et al., 1989; Smiciklas and Below, 1992; Takei et al., 2001; Below et al., 2009; Below and Uribelarrea, 2009). A shortage of N supply stimulates a change in synthesis and translocation of cytokinins to leaves. In maize, cytokinin biosynthesis is activated by N, and endogenous cytokinin concentrations are N dependent in terms of quantity (Takei et al., 2001). The cytokinins are mainly synthesized in root tips and developing seeds (Davies, 2004). Limited N supply decreases the amount of cytokinins transported from roots to xylem and to leaves (Takei et al., 2001). The endogenous concentrations of cytokinins may be associated with dry matter partitioning to the ear and GY in maize, and the concentrations are influenced by N forms, such as NH4+ and NO3- (Smiciklas and Below, 1992). At the V7 stage, the concentrations of zeatin and zeatin riboside in roots tips supplied with both NH4+ and NO3-, are much greater than those found with the NO3- alone. The supply of NH4+ + NO3- increases dry matter partitioning to the ear. When the shoot cytokinin concentration of NO3--grown plants is manipulated by applying exogenous cytokinins during vegetative stages, the dry matter partitioning to the ear, KNP and GY is increased without affecting PDMPM (Smiciklas and Below, 1992). According to these results, the d plants with lower N concentrations under crowding stress should produce less cytokinins and have lower endogenous cytokinin concentrations, which may reduce the dry matter partitioning to the ear and GY. Similarly, the d plants with suboptimal N status under crowding stress should exhibit reduced endogenous ethylene levels. Maize plants with suboptimal N status decrease ethylene biosynthesis in adventitious roots and enhance their sensitivities of root cortical cells to exogenous ethylene (Drew et al., 17 1989; He et al., 1992). The reduced biosynthesis of ethylene is due to slowed biosynthetic pathway ‘malonylamino cyclopropane- 1 -carboxylic acid ↔1-amino cyclopropane-1-carboxylic acid (ACC) → ethylene’, and due to reduced activities of ACC synthase and the ethylene forming enzyme (Drew et al., 1989). The effects are not influenced by the N source (NH4+ or NO3-) (Drew et al., 1989). The reduction in endogenous ethylene level could induce barrenness. A sudden decrease in ethylene level or a decrease in perception of maize plants to ethylene during vegetative stages could result in special ear barrenness termed ‘hollow husk’ (Below et al., 2009; Below and Uribelarrea, 2009). The ethylene level could be altered by fungicides and plant growth regulators, and the sensitivity of ethylene could be altered by the ethylene binding inhibitor 1-methylcyclopropene (Below et al., 2009; Below and Uribelarrea, 2009). The ‘hollow husk’ earshoots exhibit normal husks; however, ear development ceases and silks do not emerge (Below et al., 2009). The incidence of hollow husk would be lower under low C and N conditions than under high C and N conditions (Below et al., 2009). 1.1.5.3 Barrenness of dominated plants under crowding stress When intra-specific competition starts under field conditions, individual d plants experience lower radiance and suboptimal N status than the D plants, while the D plants experience normal radiation and N status. The C and N interaction on GY for both plant hierarchies under same plant densities could be mimicked by plant populations experiencing different levels of radiation by shading and different levels of N supply from planting or over the life cycle under similar plant densities. Uhart and Andrade (1995a) manipulated a maize hybrid 18 with different levels of radiation and N supply. They found that N deficiency affects KNP by reducing C assimilation. Nitrogen deficiency under low radiation reduces the light-saturated rate of photosynthesis or photosynthetic capacity, and only slightly diminishes CO2 photoassimilation or quantum efficiency of CO2 assimilation (Khamis et al., 1990). In summary, for d plants, the decreased photosynthetic capacity reduces C assimilation and C availability per plant from the onset of intra-specific competition until silking. Nitrogen deficiency increases N mobilization from shoot to the ears. When leaves are the source for N mobilization to the ear, leaf N content is further reduced and leaf duration is shortened, which can decrease post-silking photosynthetic activity and assimilate supply to the ears, and enhance kernel abortion at the lag phase period (Below, 1997; Echarte et al., 2008). Therefore, d plants exhibit shortage of C from pre-silking to the lag-phase period. Barren hybrid plants belong to d plants and the mechanism behind barrenness is related to C and N shortage (Vega and Sadras, 2003; Maddonni and Otegui, 2004; Vyn and Boomsma, 2009; Boomsma et al., 2009; Mayer et al., 2012). Barren plants come from no silk emergence and increased kernel abortion when pollen is available at silking. Kernel set is determined during the critical period bracketing silking, which is around 4 wk centered silking (Tollenaar et al., 2000). First, d plants that cannot reach the minimum C availability for ear growth during the critical period bracketing silking fail to expose silk and become barren (Borrás et al., 2007). Second, d plants with low current C assimilation at flowering, exhibit reduced C flux to the ear around silking and increased kernel abortion and become barren (Boomsma et al., 2009; Mayer et al., 2012; Rossini et al., 2012). The C flux to the ear during the critical period bracketing silking is further reduced by the decreased C and dry matter partitioning to the ear under N deficiency (Uhart and Andrade, 1995b; Paponov et al., 19 2005; Paponov and Engels, 2005). However, instead of reduced C flux to the ears, a recent study indicated that the enhanced kernel abortion of d plants may be due to deficient and direct N supply to the ears during the critical period bracketing silking (V12 to R2) (Below, 1997; Below et al., 2000; Rossini et al., 2012). This effect is greatest during the lag phase period (Below, 1997). Under a greenhouse environment, kernel set under N deficiency is not limited by the C supply to the ear at the end of lag phase period (Paponov and Engels, 2005). Therefore, the current C assimilation per plant and C supply to the ear during the critical period bracketing silking cannot determine barrenness. It is hypothesized that barrenness is caused by the low current C assimilation and C availability during the vegetative stage. 1.1.6 Secondary tools to characterize barrenness Threshold values of parameters at various growth stages or during a period have been estimated to predict barrenness. The threshold values for barrenness, at or below which barrenness occurs, have been estimated at anthesis or silking, during the critical period bracketing silking and at PM. The studies modeled kernel set as a function of a physiological parameter using linear, bilinear or negative exponential or hyperbolic functions (D’Andrea et al., 2006; Messina et al., 2009). Parameters at anthesis or silking include photosynthesis at 1 d after anthesis (Edmeades and Daynard, 1979a) and ear dry matter (EDM) for silk emergence (Borrás et al., 2007). Parameters during the critical period bracketing silking include PGRs (Tollenaar et al., 1992), daily intercepted photosynthetically active radiation per plant during the critical period bracketing silking (Andrade et al., 2000), and cumulative intercepted photosynthetically active radiation per plant during the critical period bracketing silking (Ritchie and Alagarswamy, 20 2003). Parameters at PM included PDMPM (Vega et al., 2000; Echarte and Andrade, 2003) and N uptake (D’Andrea et al., 2009). The relationship between GY/KNP/harvest index (HI) and PDMPM is fitted to a function with a positive x-axis intercept (Vega et al., 2000; Echarte and Andrade, 2003). The value of the positive x-axis intercept determines the threshold value of PDMPM for barrenness. Similarly, a threshold value of N uptake for barrenness is estimated by the positive x-axis intercept of the fitted relationship between GY and N absorbed at PM (D’Andrea et al., 2009). The threshold value of a physiological trait for barrenness sometimes could not be calculated because no biologically meaningful mathematical function could be established (Cicchino et al., 2010); therefore, estimating the threshold value of a physiological trait should work as a secondary tool to characterize barrenness. Another secondary tool to characterize barrenness is through association of barrenness with physiological and morphological traits at the canopy and individual plant levels. Studies used common statistical tools such as correlation, regression and frequency distribution to characterize barren plants (Buren et al., 1974; Smith et al., 1982; Daynard and Muldoon, 1983; Vega and Sadras, 2003; Boomsma, 2009). Incidence of barrenness at the canopy level is associated with ASI, and with days from 25 to 75% silking (Buren et al., 1974; Smith et al., 1982). At the individual plant level, barren plants are present in the lower values of EDM at the end of the critical period bracketing silking at 170,000 plants ha-1 (Vega and Sadras, 2003), PDM at silking (PDMs), PH at various stages, and total green leaf area per plant at silking under the combination of 54,000 plants ha-1 and 330 kg N ha-1 (Boomsma, 2009). Again, the relationship between barrenness and physiological and morphological traits could not be established under a specific field condition (Boomsma, 2009). 21 In summary, insights from previous studies on barrenness help to establish research approaches to characterize barrenness or GY through a source-sink approach by following individual plant growth and development during the life cycle. Also, barrenness could be characterized by calculating threshold values of key physiological traits, as well as measuring and calculating physiological and morphological traits. The selected individual plants should have similar initial growth and development. 1.2. Top-down Approach and Allometric Methodology 1.2.1 Top-down approach A top-down approach is widely used in the literature but not well defined. This approach dissects a complex trait/phenomenon/system/process into one or several components and/or from a higher level of biological organization as the entrance point to a lower level of organization. The top-down or reductionist approach has been applied in crop physiology in three ways. First, key physiological processes underlying GY improvement in maize and wheat (Triticum aestivum L.) have been dissected (Tollenaar and Lee, 2006; Miralles and Slafer, 2007). Grain yield is dissected into PDMPM and HI, which is the proportion of PDMPM partitioning to grains. The PDMPM is the result of dry matter accumulation throughout the growing season. The processes of dry matter accumulation are further dissected into key subcomponent processes, such as leaf area and radiation use efficiency (Tollenaar and Lee, 2006; Miralles and Slafer, 2007). Harvest index is associated with the capacity of the reproductive sink to accommodate assimilates (Tollenaar et al., 2004). Similarly, kernel set in maize is a function of PGRs and the dry matter partitioning to the ear during the spikelet initiation period and during the critical period 22 bracketing silking (Tollenaar et al., 1992; Liu and Tollenaar, 2009a). The spikelet initiation period is a 3- to 4-wk period starting at about the 12-leaftip (LT) stage. Dry matter partitioning to the ear during the critical period bracketing silking is a measure of strength of the ear as a sink for assimilates, and is termed the partitioning index (Pagano and Maddonni, 2007; Rossini et al., 2011). It is calculated as the ratio between ear growth rate during the critical period bracketing silking (EGRs) and PGRs (Andrade et al., 1999; Vega et al., 2001a; Echarte et al., 2004; Pagano and Maddonni, 2007). Barren hybrid plants are characterized by the uncoupling of EGRs with PGRs (Vega et al., 2001a). For barren plants, the ultimate HI is zero. Therefore, using the topdown approach, physiological processes underlying maize barrenness and GY can be dissected into season-long dry matter accumulation and partitioning to the ear. Second, the top-down approach has been used from a higher organizational level to a lower organizational level (Hammer et al., 2004; Caviglia and Melchiori, 2011). In plant biology, a system such as a plant population can be described at the organization level of a community of plants, a whole plant, an organ, a cell, an organelle, biochemical pathway, and gene action (Hammer et al., 2004). For homogenous crops, recent studies have added a scale of plant hierarchy between the canopy and individual plant level (Maddonni and Otegui, 2004; Maddonni and Otegui, 2006; Pagano and Maddonni, 2007; Boomsma, 2009; Caviglia and Melchiori, 2011). The inclusion of plant hierarchy in the top-down approach brings new insights into physiological mechanisms. First, a physiological trend at one level can be different from a trend in the level below or above. For example, dry matter partitioning to the head of sunflowers (Helianthus annuus L.) increases with the decrease in PDM at the canopy level (Villalobos et al., 23 1994). However, the opposite trend is observed in certain plant strata in the relationship between dry matter partitioning to the head and plant growth rate during the critical period for seed set (Vega et al., 2001a). Second, at the level of plant hierarchy alone, the D and d plants exhibit differential growth. For individual plants with similar initial plant size and development, the plant growth during the early life cycle preconditions their future kernel set (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007). The d plants exhibit lower plant growth rate during the presilking period (V7 to V13), dry matter partitioning to the ear, and KNP than the D plants. In addition, the d plants can have similar or lower PGRs compared to the D plants (Maddonni and Otegui, 2004; Pagano et al., 2007; Pagano and Maddonni, 2007). Third, different plant hierarchies exhibit various responses to plant density and N level. The D and d plants respond similarly to plant density in terms of GY and KNP, and differently in terms of kernel weight (Maddonni and Otegui, 2006). The two plant hierarchies have a similar response or differential responses to N depending on the response level of GY per unit area (Caviglia and Melchiori, 2011). Most previous studies have examined maize GY in hybrids at the canopy level, canopy and plant hierarchy levels, or canopy and individual plant levels. Few studies have examined maize from canopy to plant hierarchy to individual plant level (Boomsma, 2009; Caviglia and Melchiori, 2011), or barrenness in the context of plant hierarchy (Vyn and Boomsma, 2009). In addition, no previous studies have focused on characterizing barren plants at the individual plant level. Therefore, studying all three levels might reveal new physiological characteristics of barrenness. Finally, using the top-down approach, crop modelling dissects a complex trait into component attributes as model input parameters and assesses this complex trait at a higher 24 organizational level by integrating the information at a lower organizational level (Yin et al., 2004; Messina et al., 2009). Because crop modelling is not an approach used in this study, no further literature will be reviewed. 1.2.2 Allometric methodology Allometric methodology is the study of relationships between different parts of an organization (Kjellsson and Simonsen, 1994). Allometric methodology allows researchers to follow plant growth throughout the life cycle in a non-destructive manner (Vega et al., 2001). It combines sequential harvest to estimate PDM by an allometric relationship and non-destructive measurements of individually tagged plants within a plant population. Naturally occurring ultimately barren plants can be followed and characterized until PM without destructive samplings. Allometric relationships are the growth of a part of an organism in relation to the growth of the whole organism or part of it. Different allometric relationships have been applied to estimate PDM in maize, soybean (Glycine max L.) and sunflower as well as other crops and species (Koyama and Kira, 1956; Smith and Brand, 1983; Weiner et al., 1990; Niklas, 1994; Vega et al., 2001; Echarte and Tollenaar, 2006). Many mathematical equations have been used to develop allometric relationships in maize (Appendix A.1); however, the published studies have not shown detailed processes of developing an allometric relationship such as model comparison, justification and evaluation. In order to develop the best model for an allometric relationship, detailed and rigid developmental processes are needed. 25 1.3 Plant-to-Plant Variability in Plant and Ear Development The term ‘plant-to-plant variability’ (PPV) is not well defined in the literature. It usually refers to the non-uniformity in an investigated character among individual plants within a population. High yield production in maize is associated with reduced PPV (Glenn and Daynard, 1974; Fasoula and Fasoula, 1997; Tollenaar and Wu, 1999; Tokatlidis and Koutroubas, 2004; Martin et al., 2005; Boomsma, 2009). Plant-to-plant variability in maize within a population could be attributed to genetic differences (Francis et al., 1978), temporal differences in seed emergence (Liu et al., 2004a; Andrade and Abbate, 2005; Boomsma et al., 2010), spatial differences in plant spacing (Liu et al., 2004b; Andrade and Abbate, 2005), plant growth (Borrás et al., 2007) or intra-specific competition (Boomsma, 2009). Even for homogenous individual plants with uniform seed size, planting depth and spacing, and similar initial plant growth and development, PPV in PDM, measured as coefficient of variation (CV), increases from V3 (6-LT stage) to V9 (13-LT stage) and maintains a similar magnitude through to PM (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007). Plant-to-plant variability in plant growth has been widely studied; however, there are few studies on PPV in early ear growth and development. The PPV in plant growth has been studied throughout the life cycle, as well as ear growth and development from the spikelet initiation period to PM in hybrids (Edmeades and Daynard, 1979b; Vega and Sadras, 2003; Maddonni and Otegui, 2004; Pagano and Maddonni, 2007; Boomsma, 2009). The only documented PPV in ear morphological character is spikelet number per row (SNPR) in a hybrid, with the trend of decreased CVs in SNPR from spikelet initiation period (i.e., V8) to silking (Edmeades and Daynard, 1979b). Few attempts have been made to quantify the PPV of ear and plant 26 development simultaneously during the vegetative stages, especially in parental inbred lines and their F1 hybrid. 1.3.1 Maize life cycle and ear development In order to understand maize ear and plant development, the life cycle of maize associated with ear development is reviewed. The life cycle can be divided into vegetative, transitional, reproductive and seed stages (Bonnett, 1954). During the vegetative growth stage, the apical meristem of a plant first produces a predictable number of leaf primordia and then initiates a tassel (Tollenaar and Hunter, 1983). Tassel initiation marks the transition from vegetative growth to reproductive growth, and happens at a LT stagewhich is equal to half of the final leaf number, and also at the beginning of internode elongation (Bonnett, 1953; Tollenaar and Hunter, 1983). About three LTs after tassel initiation, the ear initiates from the last formed and the most developed lateral shoot apical meristem (Bonnett, 1954; Muldoon et al., 1984). Maize ear development goes through several distinct transitions in terms of meristem identities (Vollbrecht and Schmidt, 2009) (Fig. 1.1). The lateral shoot apical meristem first initiates a prophyll, which is the first leaf on a shoot, and approximately eight to 14 husk leaves, then transits into a female inflorescence meristem (Kaplinsky and Freeling, 2003). The inflorescence meristem then elongates and produces rows of lateral projections as spikelet pair meristem (Bonnett, 1966). Each spikelet pair meristem gives rise to a pair of spikelet meristems that are next to each other. The number of rows of spikelet meristems determines the potential kernel row number (KRN). Each spikelet meristem produces a floret meristem, which later 27 Shoot apical meristem Inflorescence meristem Spikelet meristem Spikelet pair meristem Spikelet meristem Floret meristem Staminate floret Floret meristem Pistillate floret Floret meristem Staminate floret Floret meristem Pistillate floret Figure 1.1. Schematic of the developmental progression of meristem identities during ear development (Vollbrecht and Schmidt, 2009). 28 produces a spikelet including an upper and a lower floret. The stamens of the upper floret and the lower floret abort. Ultimately, a functional upper pistillate floret is left and present in every spikelet (Bonnett, 1966; Kaplinsky and Freeling, 2003; Vollbrecht and Schmidt, 2009). From ear initiation to form final seeds, maize plants experience the following seven events: (i) During the period of transitions in female meristem identity, the tassel elongates rapidly and appears from the leaf whorl, which marks the stage of tassel emergence (TE). (ii) Right after rapid tassel elongation, the primary ear starts to accelerate elongation and emerges its prophyll at the same time or later compared to TE (Siemer et al., 1969). (iii) Anthesis happens when an anther extrudes from the tassel. (iv) Silking happens when a silk emerges from the primary ear (Siemer et al., 1969). (v) Pollination happens when pollen grains land on hairs of a silk, which is from an ovule in a pistil of a pistillate floret (Bonnett, 1966). (vi) Fertilization of egg and endosperm nuclei occurs at 24 to 36 hours after pollination (Goss, 1968). (vii) Successful fertilization leads to kernel development until all kernels reach their maximum dry matter accumulation at PM (Daynard and Duncan, 1969). Maize kernel development can be divided into three periods: endosperm cell division period or lag phase; linear grain-filling period or effective grain-filling period; and, leveling-off dry matter accumulation towards PM (Johnson and Tanner, 1972). The endosperm cell division period starts after ovary fertilization and takes around 15 d (Johnson and Tanner, 1972). The onset and completion of endosperm cell division and initiation of amyloplasts (the sites of starch deposition and formation of starch granules) occur during this period. One or multiple starch granules are formed per amyloplast. The kernel sink capacity is determined around 6 to 12 d 29 after pollination (Jones and Setter, 2000). The kernel accumulates less than 5% of its final kernel weight during this period (Johnson and Tanner, 1972). The length of linear grain-filling period depends on the assimilate availability and air temperature (Cirilo and Andrade, 1996). During the linear grain-filling period, the grains accumulate 90% of their final kernel weight at a constant rate (Johnson and Tanner, 1972). At the final period, the kernels reach their maximum dry matter accumulation at PM (Johnson and Tanner, 1972). 1.3.2 Yield compensation mechanism associated with plant-to-plant variability Under field conditions, individual maize plants have the plasticity to compensate for PPV in resource availability. Yield compensation at the canopy level depends on plant density. Under a constant density of below 80,000 plants ha-1, maize plants can compensate for factors that affect resource capture, such as absorption of solar radiation, water and nutrients, but cannot compensate for a decrease in resource utilization, such as HI (Tollenaar et al., 2006). Variations in within-row plant spacing do not significantly affect GY, HI and PDM (Liu et al., 2004; Tollennar et al., 2006). Variations in plant emergence time decrease GY and HI without affecting PDM (Nafziger et al., 1991; Liu et al., 2004a; Tollenaar et al., 2006). Variations in emergence include within-row and between-row PPV in plant emergence, and proportion of within-row delayed plants (Nafziger et al., 1991; Liu et al., 2004a; Tollenaar et al., 2006). When soil moisture is the major resource that plants compete for, early emerged plants bordered by late-emerged plants can compensate for PPV in plant emergence (Nafziger et al., 1991). Under changing plant densities, the general trend is that as the percentage of stand loss increases, the GY at the canopy level decreases (Shapiro et al., 1986; Nafziger et al., 1991; Pommel and 30 Bonhomme, 1998; Coulter et al., 2011). When stand loss happens at emergence, GY per plant increases as the percentage of stand loss increases; however, it can not compensate for the sink loss (Nafziger et al., 1991; Pommel and Bonhomme, 1998). When stand loss happens at vegetative stages, remaining plants have the plasticity to compensate for the stand loss and do not always result in yield loss (Shapiro et al., 1986; Coulter et al., 2011). The developmental stage of stand loss during vegetative growth does not always affect the ability of the remaining plants to compensate for GY (Shapiro et al., 1986; Coulter et al., 2011). When dissecting the final GY into yield components, PPV in within-row plant spacing does not influence KRN, but affects KNP and kernel weight (Pommel and Bonhomme, 1998; Coulter et al., 2011). Most studies on yield compensation have focused on results at PM; few have studied the effects of PPV in resource availability on early sink size establishment and PPV (Smith, 2012). 1.3.3 Measurement of plant-to-plant variability Statistically, there are several measures of PPV. The CV and the Gini coefficient can both be used to measure relative precision and assess inequality (Bendel et al., 1989). The Gini coefficient is defined as the arithmetic average of the absolute values of the differences between all pairs of individuals in equation 1.1 (Weiner and Solbrig, 1984). Gini coefficient = (Weiner and Solbrig, 1984) [1.1] The Gini coefficient ranges from zero when all individual plants are identical, to theoretical 1 when all individual plants of an infinite population have a value of zero except one individual plant (Weiner and Solbrig, 1984). Most studies with regards to PPV in physiological or morphological parameters use CV (Glenn and Daynard, 1974; Edmeades and Daynard, 1979b; 31 Liu and Tollenaar, 2009b). Several studies chose both CV and Gini coefficient (Vega and Sadras, 2003; Boomsma, 2009). Both coefficients reflect the ratio of a measure of dispersion relative to the mean. However, CV is a more sensitive measure of relative precision and observations in the right tail of the distribution, whereas the Gini coefficient is a more robust measure of dispersion and very sensitive to the small shift of the mean (Bendel et al., 1989). Coefficient of variation is calculated as the ratio between standard deviation (SD) and mean and is affected excessively by the mean. Therefore, the SD should be chosen to describe the by-plant variability (Boomsma, 2009). 1.4 Research Hypotheses, Objectives, and Significance of the Research Reduced barrenness and PPV represent two opportunities to increase GY. The hypotheses of the thesis are: (i) Plant-to-plant variability at the whole plant level leads to PPV in ear growth and development; and, (ii) Barrenness within a genotype is caused by either low C assimilation during vegetative growth or by low C partitioning to the ear during the critical period bracketing silking. The major objectives of the study are: (i) to investigate PPV in ear development in relation to PPV in plant development from ear initiation until 1 wk after silking and at PM, at the optimal plant density (80,000 plants ha-1) and at the canopy level; and, (ii) to explore C supply, availability and partitioning processes underlying barrenness throughout the life cycle at the canopy, subpopulation and primarily, individual plant levels. A special objective is to be able to 32 predict barrenness. These objectives were met by experimenting with homogenous individual plants of similar initial growth and development, as well as uniform plant spacing, in two parental inbred lines and their F1 hybrid. The results from this study could benefit a wide range of researchers. A better understanding of ear barrenness in maize plant population being caused by PPV could help plant breeders select for genotypes with reduced barrenness under high plant densities and increase yield potential. This is the primary benefit of the research. Crop physiologists could understand the mechanisms and processes of barrenness for the life cycle and the association of ear and plant development during vegetative and early reproductive growth stages in parental inbred lines and their F1 hybrid. The results could provide ecologists with quantitative data for theoretical analysis in reproductive allometry, growth of individual plants and size hierarchy. 33 Chapter 2. Ear Development in Relation to Plant Development in Maize (Zea mays L.) 2.0 Abstract Research on maize plants with similar initial plant size and development at optimal plant density under field conditions could improve our understanding of the nature of plant-to-plant variability (PPV) for early ear development. The objectives of this study were (i) to follow the dynamics of PPV in early ear and plant development in a leaftip (LT) stage framework and (ii) to quantify or establish a quantitative relationship between early ear development parameters and grain yield (GY). Field experiments were conducted in Ontario, Canada in 2009 in which the F1 hybrid CG60 × CG102 and its two parental inbred lines were planted at 80,000 plants ha-1 with similar initial plant size at the 4-LT stage. Data on ear traits such as ear length, spikelet number per row (SNPR), spikelet number per ear (SNPE), maximum kernel row number (KRNmax) and plant morphological traits such as plant height (PH), the maximum width of stem diameter of the stalk at 2 cm above the ground level (SD2), and the corresponding stem volume (SV) derived from SD2 (SVmax) were collected from ear initiation until 1 wk after silking and the collection was performed on a LT-stage basis during the vegetative growth stages. The three genotypes exhibited ear development as described previously in the literature. Under optimal plant density, the ear traits SNPR and SNPE exhibited relatively less PPV around the silking period than early vegetative growth stages. Plant-to-plant variability in plant morphological traits and ear length was relatively constant throughout development for each genotype. Plant-to-plant variability in SNPR was affected more than PPV in KRNmax by PPV in SVmax for the three genotypes. The F1 had shorter ear length and less ear dry matter (EDM) at silking (EDMs) and at 1 wk after silking 34 (EDMs+1) than the two parental inbred lines, although it produced greater above-ground plant dry matter (PDM) at the corresponding stages. The one-year field experiment suggests that the lower dry matter partitioning to the ear of the F1 hybrid at the silking and 1 wk after silking is not a disadvantage for final GY, compared to the two inbred lines. 35 2.1 Introduction Grain yield in maize is directly proportional to kernel number and has increased nearly 7fold in less than 70 years of intensive breeding efforts (Lee and Tollenaar, 2007). Most phenomena that increase (e.g., heterosis) or decrease GY (e.g., stress) do so through affecting kernel number (Lee and Tollenaar, 2007). There are two types of variability in plant stand, spatial and temporal, that can potentially impact GY. The impact of spatial variability or nonuniform distribution of the plants in a stand on GY is minimal (Liu et al., 2004b; Tollenaar et al., 2006). The impact of temporal variability or the non-uniform development of plants in a stand does impact GY (e.g., Liu et al., 2004a). Plant-to-plant variability for both non-uniform (i.e., variation in plant emergence) and uniform development has been documented for GY, kernel number per plant (KNP), harvest index (HI), and shoot dry matter (Edmeades and Daynard, 1979b; Vega and Sadras, 2003; Maddonni and Otegui, 2004). Ear development has been extensively studied in maize both from a developmental biology perspective (Vollbrecht and Schmidt, 2009) and from a crop physiology perspective (e.g., Edmeades et al., 1993; Otegui and Melón, 1997). The developing ear represents a gradient of tissues at varying stages of differentiation. Developmental biologists describe these ear development stages in terms of the progression of four types of reproductive meristems (Fig. 1.1). Each ear originates from a lateral shoot apical meristem. The lateral shoot apical meristem transitions into an inflorescence meristem; the inflorescence meristem produces multiple rows of spikelet pair meristems; the spikelet pair meristems generate a pair of spikelet meristems that are aligned in adjacent vertical rows (i.e., kernel rows); spikelet meristems give rise to floret 36 meristems; and soon after initiating floral organ primordia the lower floret aborts as do the stamens of the upper floret, leaving one pistillate flower per spikelet (Cheng et al., 1983; Irish, 1998; McSteen et al., 2000; Vollbrecht and Schmidt, 2009). Different methods have been used to characterize tassel and ear development as it relates to whole plant development. One approach has been to relate it to days after planting or emergence (Siemer et al., 1969; Edmeades et al., 1993). However, using actual time (i.e., days or weeks) makes comparing results from different environments impossible (Otegui and Bonhomme, 1998). An alternative to days is to use plant stage or an environmental variable such as thermal time to characterize ear development (Otegui and Melón, 1997; Otegui, 1997; Cárcova et al., 2003). The two most common methods for assessing ear development relative to crop development in maize are number of LT and fully emerged leaves with visible collars (Vstage) (Stevens et al., 1986), which are both linear functions of thermal time (Carberry, 1991; Kiniry and Bonhomme, 1991; Lejeune and Bernier, 1996; Otegui and Melón, 1997; Vinocur and Ritchie, 2001). Counting LT is a simple, non-destructive way to describe the phenological stage of a maize plant. Several studies have associated inflorescence development with LT stage (Tollenaar and Hunter, 1983; Stevens et al., 1986; Lejeune and Bernier, 1996). In general tassel initiation and ear initiation occur at a LT stage, which is equal to approximately 50% of the final leaf number (Tollenaar and Hunter, 1983; Lejeune and Bernier, 1996). Studies that have documented the impact of PPV on GY (e.g., Edmeades and Daynard, 1979b; Vega and Sadras, 2003; Maddonni and Otegui, 2004) have not addressed when this variability arises in the life-cycle. Given that GY is directly proportional to number of kernels, 37 PPV in KNP most likely arises either during the establishment of potential kernel number, or shortly after pollination. Potential kernel number is a function of SNPR and kernel row number (KRN). The only study of PPV in ear development during the establishment of potential kernel number investigated PPV in SNPR of a commercial hybrid from spikelet initiation to silking (Edmeades and Daynard, 1979b). No studies have investigated PPV in KRN. Moreover, no studies have investigated PPV in ear development in relation to plant development on parental inbred lines and their F1 hybrid during the entire period of establishing potential kernel number. The objective of this paper is to examine PPV in ear development related to plant development from ear initiation to 1 wk after silking at the optimal plant density. In order to characterize PPV in early ear development related to plant development, we selected individual plants with similar initial plant size and development at optimal plant density of 80,000 plants ha1 . Non-uniform initial plant size and development will affect subsequent PPV in ear growth and development and confound the intrinsic PPV of ear growth and development as well as plant growth at the optimal plant density. When similar initial plant size and development were considered, only PPV in plant growth were studied (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007). We frequently sampled maize plants at the same LT stage or stage of development in order to relate ear growth and development with plant growth in a LT-stage framework, and used allometric measurement to estimate plant growth during vegetative growth. Due to the significant relationship between allometric measurement and PDM in previous studies, allometric measurement is simple and quick to estimate plant growth without drying and weighting sampled plants (Pagano et al., 2007). Also, we used a functional approach to examine the dynamics of PPV in ear growth and development, as well as plant growth. The functional 38 approach utilizes mathematical equations or models to study plant growth and development, and can generate values such as PPV and show apparent trends in PPV if there are any (Hunt, 1982). No previous literature has used functional approach to study PPV. 39 2.2 Materials and Methods 2.2.1 Genetic materials and experimental design Two maize inbred lines, CG60 and CG102, and their single-cross hybrid CG60 × CG102 were planted using a randomized complete block design with three replications at the Elora Research Station, ON, Canada (43o38’ N, 80o25’ W; London loam soil [Aquic Hapludalf]) in 2009. The three genotypes differ in kernel set dynamics and have been used in previous physiology and genetics studies (Echarte and Tollenaar, 2006; Khanal et al., 2011; Singh et al., 2011). CG60 is derived from Pioneer 3902 and represents the Iodent heterotic pattern (Lee et al., 2001a). CG102 is derived from Cycle 2 of the CG Stiff Stalk Combined population and represents the Stiff Stalk heterotic pattern (Lee et al., 2001b). The hybrid represents one of the classic heterotic patterns grown in the Northern Corn Belt and is not a commercial hybrid (Lee and Tracy, 2009). The experimental field was moldboard plowed in the fall before the experimental year. The preceding crop was alfalfa (Medicago sativa L.). The secondary tillage included spring disking and cultivation twice using a cultivator, and cultipacking for seed-bed preparation. The experimental plots received 500 kg ha-1 of 20-10-10 (N–P–K) before planting. Ammonium nitrate (34–0–0) was applied at 100 kg ha-1 N as a single band at the 12-LT stage of the F1 hybrid. Weeds were controlled with pre-planting herbicides made of a mixture of 3-4 L ha-1 Primestra II Magnun, which included S-metolachlor [Acetamide, 2-chloro-N-(2-ethyl-6-methylphenyl)-N-(2methoxy-1-methylethyl]-,(S)] and atrazine (2-chloro-4-ethylamino-6-isopropylamino-s-triazine), 40 and 0.3 L ha-1 Callisto, which included mesotrione [2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1,3cyclohexanedione]. No post-emergence herbicide was applied. Plants were hand-planted on 13 May 2009 at a density of 120,000 plants ha-1 (12 plants m-2) and thinned to the optimal density of 80,000 plants ha-1 (8 plants m-2) at the 4-LT stage. Each plot was in a north-south orientation and consisted of six rows, 10 m long and 0.76 m between rows. Daily minimum and maximum air temperature, rainfall and incident solar radiation were recorded from planting until final harvest using a weather station at the Elora Research Station. Growing degree days (GDD) were calculated as: GDD = Dm [( i Dp T max T min ) Tbase] 2 [2.1] Where Tmax and Tmin are daily maximum and minimum air temperature, Tbase is the base temperature of 8 oC below which maize plants are assumed to cease development (Wang, 1960; Major et al., 1983; Ritchie and NeSmith, 1991). Abbreviation Dp is date of planting, and Dm is date of physiological maturity (PM). Each six-row plot was sub-divided for sampling into an early and late stage sampling area. The outer rows of each plot were not part of the sampling areas. At the 4-LT stage, approximately 150 visually similar plants (i.e., uniform PH and maximum width of basal stem diameter [SDb]) from the remaining rows were tagged. The early stage sampling area had a three to four plant border from the start of the plot to the sampling area and was at the front of all plots. In total approximately 130 plants per plot were tagged at the 4-LT stage in the early stage sampling area. The late stage sampling area was behind the early stage sampling area in all plots 41 and was bordered from the early stage area by five plants, with a three to four plant border at the end of the plot. In total approximately 20 plants per plot were tagged at the 4-LT stage in the late stage sampling area. The early stage sampling area was used to systematically collect plants for destructive sampling throughout the vegetative portion of the life cycle (Table 2.1). If possible, six to seven plants per plot were collected at every half LT stage from 6-LT stage until 12-LT stage for CG60 and CG102 and from 6-LT stage until 13-LT stage for the hybrid from the early sampling area. Following these LT stages plants were collected only from every full LT stage until tassel emergence (TE) from the early sampling area. Destructive plant samples were collected from six to seven plants per plot at silking, 1 wk after silking and PM from the late stage sampling area. The sampled plants were not competitively bordered and were buffered from prior and subsequent harvests. 2.2.2 Developmental stages, morphometric and physiological measurements Vegetative development in maize is generally described by the LT stage, defined as the total number of visible leaves in the leaf whorl including the coleoptile (Lejeune and Bernier, 1996). In an attempt to increase precision, full-LT stage and half-LT stage designations were used in this study. For example, a plant is considered at the 6-LT stage when the 7-LT is just visible and has reached the leaf whorl but has not elongated. A plant is designated as at the 6.5LT stage when the 7-LT is the youngest visible leaf in the leaf whorl and the 7-LT has reached half of the potential maximum length. The potential maximum length of the 7-LT is estimated by measuring the length of the 7-LT from plants at the 7-LT stage. Tassel emergence is the stage when the tassel tip emerges within the leaf whorl (Siemer et al., 1969). 42 Table 2.1. Summary of numbers of sampled plants CG60, CG102 and their F1 CG60 × CG102 from the 6-leaftip (LT) stage until tassel emergence (TE). The F1 has a total of 17 leaves, while CG60 and CG102 have 16 and 14 leaves, respectively. Genotype Phenological stages –––––––––––––––––––––––––––––––––––––LT––––––––––––––––––––––––––––––––––––––––––––––– 6 6.5 7 7.5 8 8.5 9 9.5 10 10.5 11 11.5 CG60 20 8 20 9 18 11 20 20 20 20 20 20 CG102 20 4 5 20 19 20 20 20 9 15 20 20 20 7 20 0 14 20 20 17 20 7 20 1 F1 † NA, samples are not applicable for the genotype since CG102 has 14 leaves in total. 43 12 12.5 13 14 15 16 10 20 4 14 20 20 20 20 20 20 12 NA† 20 20 NA 20 TE 20 20 20 Starting at the 6-LT stage, developing ear shoots from the collected plants were dissected with the aid of a binocular microscope (Wild M2B Heerbrugg, Heerbrugg, Switzerland). Tassel initiation and ear initiation were considered to have occurred when 50% of the sampled shoot apical and axillary meristems respectively, reached 0.4 mm (Stevens et al., 1986). From ear initiation until 1 wk after silking, all the measurements were conducted on the primary ear of the plant. Spikelet pair meristem appearance was noted when all plants sampled at a LT stage reached their final number of kernel row (KRN). Ear length, KRNmax (i.e., from the base to the tip of a developing ear KRN changes, therefore the largest value was noted) and SNPR were recorded when spikelet pair meristems were visible (i.e., 10-LT for CG60, 9-LT for CG102 and 10.5-LT for the F1). The change in KRN is defined as difference in row number for at least five consecutive rows from the KRN at the base of a developing ear. The KRN at the base of a developing ear is registered as the first number from the base of an ear that holds for at least five consecutive rows. The two different KRN separates the ‘base’ and ‘tip’ of the ear. Therefore, the ‘tip’ of an ear is defined as the position exhibiting change in KRN from the base of a developing ear. When differences in KRN between tip and base occurred, the KRN at the tip and base as well as the spikelet position of change in KRN were recorded. Spikelet number per ear was calculated by multiplying SNPR by KRNmax. Above-ground plant dry matter from the early sampling area was based on morphometric measurements starting at the 8.5-LT (CG102), 9-LT (CG60), or 9.5-LT (the F1) stage (i.e., at ear initiation). Stem volume (in cm3) is closely associated with PDM in maize during the vegetative development (Maddonni and Otegui, 2004). Morphometric measurements consisted of PH (i.e., the distance from the ground level to the uppermost leaf collar, in cm) and SD2 (in cm). The 44 SVmax was calculated as: SVmax = π × PH × (SD2 × 0.5)2 [2.2] Anthesis and silking dates for each tagged plant were recorded. Anthesis was noted when at least one anther was extruded from the tassel, and silking was recorded when one silk had emerged from the primary ear. Ear length, SNPR, KRNmax, and KNP were recorded for each ear from the plants sampled at silking, 1 wk after silking, and PM. Individual PDM and EDM for the plants sampled at silking, 1 wk after silking and PM were obtained by oven drying (80 o C) the tissue to constant weight. Final harvest at PM was determined when all tagged plants completed black layer formation (Tollennar and Daynard, 1978). 2.2.3 Statistical analyses Shapiro-Wilk tests, via PROC UNIVARIATE procedure of the SAS software, version 9.2 (SAS Institute, 2008) were conducted to test normality. Due to the non-normality in most of the data, differences among genotypes in physiological traits were tested by Kruskal-Wallis test, via PROC NPAR1WAY procedure of SAS. The physiological traits included GDD from ear initiation to silking, planting to anthesis and planting to silking, KRNmax, SNPR at silking, spikelet initiation rate (SNPR GDD-1) as well as the agronomic traits at silking, 1 wk after silking and PM. The sample size of KRNmax for each genotype included individual ears from KRN formation stage to 1 wk after silking and PM. Spikelet initiation rate was obtained by the division of SNPR at silking and the corresponding GDD from ear initiation to silking (Allison and Daynard, 1979). 45 The relationship between LT and GDD was obtained using the PROC REG procedure. Difference in the slope between LT stage and GDD among genotypes was tested by the Student's t test. The rate of spikelet initiation (SNPR LT-1) during the rapid spikelet production period on a LT stage basis was determined by PROC REG procedure of SAS (Otegui and Melón, 1997). Spearman’s correlation coefficients for each genotype between ear length and SNPR were computed using SAS PROC CORR procedure, because not all the ear length and SNPR data at each stage of development fulfilled the assumption of normal distribution on the base of the Shapiro-Wilk test statistic W of the PROC UNIVARIATE procedure of SAS. In order to examine the PPV within a genotype, distributions of various traits from raw data for each phenological stage were tested for normality using the Shapiro-Wilk test statistic W of the PROC UNIVARIATE procedure. The distribution is normal when the W statistic is significant at P > 0.05. The same procedure was used to calculate mean and standard deviation (SD). Coefficients of variation (CV) were only used when the distribution was normal. Nonlinear regression is the one in which the relationship between the response variable and at least one of its explanatory variables is nonlinear (Ratkowsky, 1990) and non-linear regression was applied to the relationship between ear length and phenological stage, between CV of SVmax, SNPR, SNPE and phenological stage using PROC NLIN procedure of SAS. The relationships between CV of EL, SD of SNPE and phenological stage were estimated by linear regression analyses using the PROC REG procedure of SAS. Residuals were checked for normality and homoscedasticity before conducting linear regression analyses. 46 2.3 Results and Discussion 2.3.1 General phenological development in terms of thermal time From planting to harvest 1032 GDD were accumulated, which is slightly below the 10-yr average for Elora, ON, Canada (1167 GDD) (OMAFRA, 2009). Leaftip appearance exhibited a significant linear relationship with GDD for the parental inbred CG60, CG102 and their F1 hybrid (Fig. 2.1). To reach the 6-LT stage the F1 required 215 GDD, CG60 required 228 GDD, while CG102 needed 269 GDD. The slopes of the linear relationships did not differ among genotypes, indicating that rate of LT appearance in the two parental inbred lines and the F1 required similar GDD (P > 0.05). To characterize the genotypic differences in LT appearance, the phyllochron was calculated for each genotype (Fig. 2.1). Phyllochron is defined as the GDD between the appearances of two successive LT (McMaster and Wilhelm, 1995). The three genotypes did not differ in phyllochron (inverse of the slope), although CG60, CG102 and the F1 had different final leaf numbers (Table 2.2). The average phyllochron across the three genotypes was 28.2 GDD leaf-1. The F1 required fewer GDD to reach anthesis and silking than the inbred parents, with CG102 showing the slowest phenological development of the two parental inbred lines (Table 2.2). The final leaf number attained by CG60, CG102 and the F1 was 16, 14 and 17, respectively. Tassel initiation of CG60, CG102 and the F1 occurred at the 7.5-LT, 6.5-LT, and 7.5-LT stage, respectively (Table 2.2). Apical ear initiation occurred at the 9.0-LT, 8.5-LT, and 9.5-LT stage for the CG60, CG102 and the F1, respectively. CG102 required only 42 GDD between tassel initiation and ear initiation while the other two genotypes required about 75 GDD (Table 2.2). The three genotypes used in this study exhibited similar phenological development to other published studies (e.g., Tollenaar and Hunter, 1983; Lejeune and Bernier, 1996). 47 Leaftip number 20 18 CG60 CG102 F1 16 CG60 CG102 F1 14 12 10 8 6 4 0 100 200 300 400 500 600 Growing degree days Figure 2.1. The linear relationships between leaftip (LT) number and the growing degree days (GDD) accumulated from the day after planting in two parental inbred lines CG60 and CG102 and their F1 hybrid CG60 × CG102 grown under 80,000 plants ha-1 in 2009. The relationships between LT appearance and GDD were LT = - 3.3 + 0.038 × GDD (R2 = 0.95, P < 0.0001) for CG60, LT = - 3.2 + 0.033 × GDD for CG102 (R2 = 0.97, P < 0.0001) and LT = - 2.2 + 0.036 × GDD (R2 = 0.99, P < 0.0001) for the F1. There were no significant differences in the slopes (P = 0.05). CG60, CG102 and the F1 had a phyllochron of 26.3, 30.3 and 27.8 GDD leaf-1 respectively. Growing degree days were calculated from daily mean air temperature above 8 oC (Ritchie and NeSmith, 1991). 48 Table 2.2. Thermal time accumulation in growing degree days (GDD) required for the key phenological stages, plant and ear morphological characteristics for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. The numbers in parentheses are leaftip (LT) stages of the plants. Maximum kernel row number per ear after kernel row number formation is derived from 202, 207 and 196 plants for CG60, CG102 and the F1, respectively. Growth stage and ear trait CG60 CG102 F1 Planting to tassel initiation (GDD) ~279 (7.5-LT) 318 (6.5-LT) ~265 (7.5-LT) Planting to ear initiation (GDD) 355 (9.0-LT) 360 (8.5-LT) 340 (9.5-LT) Tassel initiation to anthesis (GDD) ~389 363 ~390 Ear initiation to silking (GDD) 307b† 330a 286c Planting to anthesis (GDD) 663b 683a 654b Planting to silking (GDD) 662b 690a 626c 16 14 17 Kernel row number formation (GDD) 378 (11-LT) 423 (10-LT) 369 (11-LT) Change in kernel row number (GDD) 378 (10.5-LT) 471 (13-LT) 408 (12.5-LT) 13.6b 14.0a 14.0a Final leaf number Maximum kernel row number Spikelet number per row at silking 33b 39a 38a Spikelet initiation rate (spikelet number per row GDD-1) 0.11c 0.12b 0.14a † Different letters within a row indicate significant difference (P < 0.05) among genotypes. 49 2.3.2 Ear development in terms of thermal time and leaftip stage. Appearance of spikelet pair meristems (Fig. 1.1) occurred at the 11-LT, 10-LT, and 11LT stage for the CG60, CG102 and F1, respectively, with kernel rows visible approximately two LTs after ear initiation for the three genotypes (Table 2.2). From ear initiation to spikelet pair meristem, CG102 required more GDD than the other two genotypes (63 GDD for CG102, compared to 23 and 29 GDD for CG60 and the F1, respectively). Both inbred lines and their F1 hybrid exhibited an approximately linear rate of SNPR production after spikelet pair meristem establishment (Figs. 2.2-2.4). The linear rapid SNPR production phases were between 11.5-LT and 16-LT for CG60, and between 10.5-LT and 13-LT for CG102, and between 12.5-LT and 17-LT for the F1. During this phase, the rate of spikelet initiation was 4.2 SNPR LT-1 for CG60 (R2 = 0.80, n = 101), 7.0 SNPR LT-1 for CG102 (R2 = 0.84, n = 96) and 5.3 SNPR LT-1 for the F1 (R2 = 0.90, n = 115), respectively. The genotypes differed in the phenological stage at which the maximum SNPR was established. CG60 and CG102 attained the maximum SNPR at silking, while the F1 reached the maximum SNPR at 1 wk after silking. From ear initiation until silking, the F1 produced more SNPR per GDD (0.14 SNPR GDD-1) than the two inbred lines (0.11 SNPR GDD-1 and 0.12 SNPR GDD-1 for CG60 and CG 102, respectively) (Table 2.2). At silking, the inbred line CG102 and the F1 had a higher SNPR than CG60 (Table 2.2). These two genotypes also formed more KRNmax than CG60 (Fig. 2.5). Therefore, inbred line CG102 and the F1 had a higher potential kernel number than CG60. 50 50 45 Spikelet number per row 40 35 30 25 20 15 10 5 0 8 9 10 11 12 13 14 15 16 TE 17 Silking Silking 18 19 + 1 wk 20 Leaftip stage Phenological stage Figure 2.2. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of inbred line CG60 grown under 80,000 plants ha-1 in 2009. All sampled plants were initially similar plants with uniform plant height and maximum width of basal stem diameter at the 4-leaftip stage. The points in each corresponding phenological stage represent the range of spikelet number per row. The line represents the average spikelet number per row at the specific phenological stage. TE, tassel emergence. 51 50 45 Spikelet number per row 40 35 30 25 20 15 10 5 0 8 9 10 11 12 13 Leaftip stage 14 TE 15 Silking 16 Silking 17 + 1 wk 18 Phenological stage Figure 2.3. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of inbred line CG102 grown under 80,000 plants ha-1 in 2009. All sampled plants were initially similar plants with uniform plant height, and maximum width of basal stem diameter at the 4-leaftip stage. The points in each corresponding phenological stage represent the range of spikelet number per row. The line represents the average number of spikelet number per row at the specific phenological stage. TE, tassel emergence. 52 50 45 Spikelet number per row 40 35 30 25 20 15 10 5 0 8 9 10 11 12 13 14 15 16 17 Silking 18 Silking 19 + 1 wk Leaftip stages Phenological stage Figure 2.4. Dynamics of spikelet number per row from ear initiation to 1 wk after silking in primary ear of the F1 CG60 × CG102 grown under 80,000 plants ha-1 in 2009. All sampled plants were initially similar plants with uniform plant height, and maximum width of basal stem diameter at the 4-leaftip stage. The points in each corresponding phenological stage represent the range of spikelet number per row. The line represents the average spikelet number per row at the specific phenological stage. 53 60 CG60 CG102 F1 50 Frequency (%) 40 30 20 10 0 12 14 16 B14T12 B16T12 B16T14 Mixture Others Kernel row number composition Figure 2.5. Frequency distributions of kernel row number (KRN) in inbred lines CG60, CG102 and the F1 hybrid CG60 × CG102 grown under 80,000 plants ha-1 in 2009. All sampled plants were initially similar plants with uniform plant height, and maximum width of basal stem diameter at the 4-leaftip stage. The number of sampled plants is 202, 207 and 196 for CG60, CG102 and the F1, respectively from KRN formation stage until 1 wk after silking and at physiological maturity. Changes in KRN from the base (B) to the tip (T) of the ear were observed during ear development in all three genotypes. The change in KRN is defined as difference in KRN for at least five consecutive rows from the KRN at the base of a developing ear. The KRN at the base of a developing ear is registered as the first number from the base of an ear that holds for at least five consecutive rows. The ‘tip’ of an ear is defined as the position exhibiting change in KRN from the base of a developing ear. Abbreviation B14T12 represents ears with 14 KRN from the base and 12 KRN at the tip. Abbreviation B16T12 represents ears with 16 KRN from the base and 12 KRN at the tip. Abbreviation B16T14 represents ears with 16 KRN from the base and 14 KRN at the tip. Mixture represents ears exhibiting changes in KRN twice from the base to the tip of the ear. Others represent other KRN composition with change in KRN once or without change in KRN. 54 2.3.3 Above-ground plant dry matter and ear traits Average SNPR and SNPE exhibited quadratic increases during vegetative and early reproductive development for the three genotypes (data not shown). Spikelet number per ear reached the maximum at silking, silking and 1 wk after silking for CG60, CG102 and the F1, respectively. Average ear length exhibited an exponential increase during vegetative and early reproductive development for all three genotypes similar to that observed by Wilson and Allison (1978) (Fig. 2.6). CG60 (9.5 cm) had ear length longer than CG102 (8.1 cm) and F1 (8.0 cm) at silking (Fig. 2.6). All genotypes reached the maximum ear length after silking. At PM, F1 exhibited the longest ear length (14.8 cm), followed by CG60 (12.4 cm), with CG102 having the shortest ear (11.6 cm). Maximum kernel row number of CG60 and the F1 was predominantly 12row, with some 14- and 16-row ears present (Fig. 2.5). However, KRNmax of CG102 was predominantly 14, with some 12-row and 16-row ears. Changes in KRN from the base to the tip of the ear were observed during ear development in all three genotypes. However, KRNmax was the most consistent, from base to tip, in CG102, and the most variable in CG60. About 2% of CG60 ears exhibited changes in KRN two times from the base to the tip of the ear. Changes in row number occurred at the 10.5-LT, 13-LT and 12.5-LT stage for CG60, CG102 and the F1, respectively (Table 2.2). Significant positive correlations between ear length and SNPR were observed in CG60, CG102 and the F1 during vegetative development (Table 2.3). However, this relationship did not hold up at all stages of development. For CG60 it extended from the 10-LT to 16-LT, while for CG102 this relationship was observed from the 9-LT to 14-LT and through TE. The F1 55 160 12 CG60 Average EL SD of EL Estimated average EL Estimated SD of EL 120 8 80 4 40 Mean ear lengh (mm) 8 9 10 11 12 13 Leaftip stage 14 15 16 TE wk 17 Silking 18 Silking 19 + 120 12 160 CG102 120 8 80 4 40 0 0 8 9 10 11 12 Leaftip stage 13 14 TE 15 Silking Silking + 18 1 wk 16 17 19 20 12 160 F1 120 Standard deviation of ear length (cm) 0 0 8 80 4 40 0 0 8 9 10 11 12 13 14 15 16 17 Silking 18 Silking 19 + 120wk Leaftip stage Phenological stage Figure 2.6. Mean ear length and standard deviation (SD) of ear length in sampled inbred lines CG60, CG102 and their F1 CG60 × CG102 plants during different phenological stages (PS) grown under 80,000 plants ha-1 in 2009. The values of PS in CG60 for tassel emergence (TE), silking and 1 wk after silking are 17, 18 and 19, respectively. The values of PS in CG102 for TE, silking and 1 wk after silking is 15, 16 and 17, respectively. The values of PS in the F1 for silking and 1 wk after silking is 18 and 19, respectively. Both mean ear length and SD of ear length followed exponential development for the three genotypes. The relationship between ear length of CG60 and PS is ear length = 0.0005e(0.66PS) (R2 = 0.98). The relationship between SD 56 of ear length and PS for CG60 is SD = 0.0047e(0.41PS) (R2 = 0.99). The relationship between ear length of CG102 and PS is ear length = 0.0014e(0.68PS) (R2 = 0.99). The relationship between SD of ear length and PS for CG102 is SD = 0.0256e(0.34PS) (R2 = 0.88). The relationship between ear length of the F1 and PS is ear length = 0.0023e(0.57PS) (R2 = 0.99). The relationship between SD of ear length and PS for the F1 is SD = 0.0006e(0.52PS) (R2 = 0.99). All relationships are significant at P value < 0.0001. 57 Table 2.3. Spearman’s rank phenotypic correlation coefficients between ear length and spikelet number per row during development including tassel emergence (TE), silking and 1 wk after silking for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. Genotype ______________________________________________ LT _______________________________________________________ CG60 CG102 F1 9 9.5 10 10.5 11 NA† 0.75** NA NA 0.61** NA 0.72** 0.96*** NA 0.54* 0.87*** 0.88* 0.71** 0.81*** 0.74** ______________________________ 13 14 11.5 12 0.97*** 0.88** 0.62** 0.93*** NA NA LT ____________________________ 15 16 17 TE Silking CG60 0.86*** 0.89*** 0.86** 0.81*** NA -0.22 -0.38 CG102 0.86*** 0.48* NA NA NA 0.45* 0.34 F1 0.89*** 0.88*** 0.82*** 0.16 -0.65** NA 0.09 *, **, *** represent significance at probability 0.05, 0.01 and 0.001, respectively. † NA means either not applicable or value not available. 58 12.5 NA NA 0.81** 1 wk after silking 0.30 0.16 -0.32 displayed this relationship from 10.5-LT to 15-LT; no significant correlation was evident at the 16-LT, and interestingly, there was a significantly negative correlation between SNPR and ear length in the F1 at the 17-LT. Beyond TE, there were no significant correlations between SNPR and ear length in any of the genotypes (Table 2.3). Two metrics are used to assess variability: SD and the CV. Coefficients of variation for each trait/stage of development were given only when normal distributions were observed (see Table 2.4 for a list of traits and stages of development that did not follow a normal distribution). The CVs for all three plant traits, PH, SD2 and SVmax, across the genotypes were relatively constant across the range of vegetative development (data only presented for CV of SVmax in Figs. 2.7-2.9). The SD for SVmax increased with plant development across the three genotypes (Figs. 2.7-2.9). For the ear characteristics, SNPR, SNPE, and ear length, only the CVs of ear length were relatively constant across the range of vegetative development (Figs. 2.10 and 2.14). All three genotypes exhibited greater variability in SNPR and SNPE in the earlier stages of development, but reduced variability in the latter stages of development (Figs. 2.10, 2.12 and 2.14). The SD of SNPE kept increasing until 1 wk after silking for the three genotypes (Figs. 2.11, 2.13 and 2.15). In order to compare the three genotypes in the CV of plant morphological traits and ear characteristics, the stages of KRN formation, change in KRN, final LT, silking, 1 wk after silking and PM were selected to compare the three genotypes when the traits were normally distributed (Table 2.4). Only larger than 10% difference in CV was considered. At the KRN formation stage, the F1 had lower CV of SNPR and SNPE (around 21%) than the two parental 59 Table 2.4. List of phenological stages during which indicated variables that were not normally distributed. All distributions were based on approximately 20 observations in two inbred lines CG60 and CG102 and their F1 CG60 × CG102 in plant morphological traits, plant height (PH), the maximum width of stem diameter 2 cm above the ground level (SD2) and stem volume (SVmax) from the leaftip (LT) stage of ear initiation until tassel emergence (TE) and aboveground plant dry matter (PDM) at silking and 1 wk after silking and at physiological maturity (PM); and ear characteristics, spikelet number per row (SNPR), spikelet number per ear (SNPE), ear length at the same corresponding stages. All sampled plants were initially similar plants with uniform PH, maximum width of basal stem diameter at the 4-LT stage. Phenological Genotype Plant morphological traits stages Vegetative stage Silking, 1 wk after silking and PM CG60 CG102 F1 CG60 CG102 F1 PH 13-LT and TE 8.5- and 14-LT 13-, 15- and 16-LT Silking 1 wk after silking SD2 None 8.5- and 11-LT None None None SVmax or PDM 14-LT None 10-LT None None None None None Ear characteristics Vegetative stage Silking, 1 wk after silking and PM CG60 CG102 F1 CG60 SNPR 12-LT and TE 9-, 11-LT and TE 15-LT None SNPE 10.5-, 12-LT and TE 9-LT None None Ear length 9-LT None 9.5- and 12.5-LT None CG102 Silking and PM None 1 wk after silking F1 Silking and PM Silking Silking 60 70 160 140 SD of SVmax 60 SD of SVmax 120 50 100 80 40 60 30 40 20 Standard deviation (SD) (cm2) Coefficient of variation (CV) (%) CV of SVmax 20 0 10 8 9 10 11 12 13 14 15 16 TE 17 Silking Silking +201 wk 18 19 Leaftip stage Phenological stage Figure 2.7. Coefficients of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 17, 18 and 19. The relationship between the SD of SVmax and PS is SD = 0.41e(0.29PS) (R² = 0.81, P < 0.0001). All sampled plants were initially similar plants with uniform plant height and maximum width of basal stem diameter at the 4-leaftip stage. 61 70 160 CV of SVmax 140 SD of SVmax 120 50 100 40 80 60 30 40 Standard deviation (SD) (cm2) Coefficient of variation (CV) (%) SD of SVmax 60 20 20 10 0 8 9 10 11 12 Leaftip stage 13 14 TE 15 Silking 16 Silking + 1 18 wk 17 Phenological stage Figure 2.8. Coefficients of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled inbred line CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 15, 16 and 17. The relationship between the SD of SVmax and PS is SD = 0.17e(0.37PS) (R² = 0.97, P < 0.0001). All sampled plants were initially similar plants with uniform plant height and maximum width of basal stem diameter at the 4-leaftip stage. 62 70 180 CV of SVmax SD of SVmax 140 50 120 40 100 30 80 60 20 40 10 Standard deviation (SD) (cm2) Coefficient of variation (CV) (%) 160 SD of SVmax 60 20 0 8 9 10 11 12 13 Leaftip stage 14 15 16 17 0 Silking Silking + 20 1 wk 18 19 Phenological stage Figure 2.9. Coefficient of variation (CV) and standard deviation (SD) of stem volume (SVmax) of sampled F1 CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. All sampled plants were initially similar plants with uniform plant height and maximum width of basal stem diameter at the 4-leaftip stage. The silking and 1 wk after silking is assigned as PS values of 18 and 19. The relationship between the SD of SVmax and PS is SD = 0.93 e(0.27PS) (R² = 0.96, P < 0.0001). 63 70 CV of SNPR CV of SNPE CV of EL Estimated CVof SNPR Estimated CV of SNPE Estimated CV of EL Coefficient of variation (CV) (%) 60 50 40 30 20 10 0 8 9 10 11 12 13 Leaftip stage 14 15 16 TE 17 Silking Silking +20 1 wk 18 19 Phenological stage Figure 2.10. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 17, 18 and 19. The relationship between CV of SNPR and PS is CV = 1.73 × 105 PS-3.53 (R2 = 0.98). The relationship between CV of SNPE and PS is CV = CV = 1.35 × 105 PS-3.37 (R2 = 0.98). The relationship between CV of EL and PS is CV = 51.81 – 2.01 × PS (R² = 0.49). . All relationships are significant at P value < 0.01. 64 120 SD of SNPR × 10 SD of SNPE SD of EL × 10 Estimated of SD of SNPE Standard deviation (SD) 100 80 60 40 20 0 8 9 10 11 12 13 Leaftip stage 14 15 16 TE 17 Silking Silking +20 1 wk 18 19 Phenological stage Figure 2.11. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for inbred line CG60 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 17, 18 and 19. The relationship between SD of SNPE and PS is SD = -31.66 + 5.04 × PS (R² = 0.73, P =0.0035). 65 70 CV of SNPR CV of SNPE CV of EL Estimated CV of SNPR Estimated CVof SNPE Coefficient of variation (CV) (%) 60 50 40 30 20 10 0 8 9 10 11 12 13 14 TE 15 Silking 16 Silking 17 + 1 wk 18 Leaftip stage Phenological stage Figure 2.12. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for inbred line CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 15, 16 and 17. The relationship between CV of SNPR and PS is CV = 1.89 × 106 PS-4.75 (R2 = 0.95). The relationship between CV of SNPE and PS is CV = 1.00 × 106 PS-4.43 (R2 = 0.95). All relationships are significant at P value < 0.0001. 66 120 SD of SNPR × 10 SD of SNPE SD of EL × 10 Estimated SD of SNPE Standard deviation (SD) 100 80 60 40 20 0 8 9 10 11 12 13 14 TE 15 Silking Silking 16 17 + 1 wk 18 Leaftip stage Phenological stage Figure 2.13. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for inbred line CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The tassel emergence (TE), silking and 1 wk after silking are assigned as PS values of 15, 16 and 17. The relationship between SD of SNPE and PS is SD = -36.40 + 5.53 × PS (R² = 0.72, P = 0.001). 67 CV of SNPR CV of SNPE CV of EL Estimated CV of SNPR Estimated CV of SNPE Estimated CV of EL Coefficient of variation (CV) (%) 60 40 20 0 8 9 10 11 12 13 14 15 16 17 Silking Silking + 20 1 wk 18 19 Leaftip stage Phenological stage Figure 2.14. Coefficient of variation (CV) and standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length (EL) for F1 hybrid CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The silking and 1 wk after silking is assigned as PS values of 18 and 19. The relationship between CV of SNPR and PS is CV = 3.83 × 104 PS-3.13 (R2 = 0.99). The relationship between CV of SNPE and PS is CV = 1.18 × 103 PS-1.70 (R2 = 0.97). The relationship between CV of EL and PS is CV = 30.23 – 1.03 × PS (R² = 0.95). . All relationships are significant at P value < 0.0001. 68 120 SD of SNPR × 10 SD of SNPE SD of EL × 10 Estimated SD of SNPE Standard deviation (SD) 100 80 60 40 20 0 8 9 10 11 12 13 14 15 16 17 Silking Silking + 20 1 wk 18 19 Leaftip stage Phenological stage Figure 2.15. Standard deviation (SD) of spikelet number per row (SNPR), spikelet number per ear (SNPE) and ear length for F1 hybrid CG60 × CG102 during different phenological stages (PS) when the crop was grown under 80,000 plants ha-1 in 2009. The silking and 1 wk after silking is assigned as PS values of 18 and 19. The relationship between SD of SNPE and PS is SD = -51.35 + 6.20 × PS (R² = 0.84, P = 0.0015). 69 inbred lines (above 36%) (Figs. 2.10, 2.12 and 2.14). At the stage of change in KRN, the CG60 had a higher CV of SNPR (50%) than CG102 (11%) and the F1 (12%). At PM, the F1 had lower CV of SNPR (3%) than the two parental inbred lines (above 13%). The three genotypes were similar in CV of ear characteristics at the other selected stages and similar in CV of plant morphological traits at each selected stage (Figs. 2.7-2.9). The KRNmax was not normally distributed at most of the phenological stages for the three genotypes except of CG60 at 1 wk after silking and CG102 at the 10-LT stage. The CV of SNPR was more affected than the CV of KRNmax by CV of SVmax at the KRN formation stage for the three genotypes, which meant that the CV of SNPR was more than 10% larger than CV of KRNmax (Fig. 2.16). The CG60 and CG102 kept the trend until 12-LT and 11-LT stage, respectively. Starting from 13-LT (CG60), 11.5-LT (CG102) and 12.5-LT (the F1) stage to 1 wk after silking and at PM, the CV of SVmax had no effects on CV of SNPR and CV of KRNmax for the three genotypes. Moreover, the F1 had lower CV of SNPR (21%) than CG60 (37%) and CG102 (46%) at the KRN formation stage when the three genotypes had similar CV of SVmax (around 25%) (Fig. 2.16). In addition, the CV of KRNmax was similar among the three genotypes and was between 7% and 17% except that CG60 had an above 20% CV of KRNmax at the KRN formation stage (i.e., 11-LT) (Fig. 2.16). Not unexpectedly, the F1 accumulated significantly more PDM at silking (PDMs), 1 wk after silking (PDMs+1), PM (PDMPM) and GY (Tables 2.5 and 2.6) and individual values of each four traits across all three genotypes is present in Fig. 2.17. The two parental inbred lines had similar PDMs, PDMs+1; however, CG102 had significantly lower PDMPM. Somewhat surprising 70 50 SNPR KRNmax 40 Coefficient of variation of ear traits (%) 11-LT SNPR at KRN formation KRNmax at KRN formation 30 50 12-LT CG60 CG102 10-LT 40 11.5-LT 30 10.5-LT 20 20 10 10 0 0 0 10 20 30 40 0 10 20 30 40 50 F1 40 30 11-LT 20 10 0 0 10 20 30 40 Coefficient of variation of stem volume (%) Figure 2.16. The relationship between plant-to-plant variability in stem volume measured as coefficient of variation (CV) and plantto-plant variability in spikelet number per row (SNPR) and maximum kernel row number (KRNmax) from kernel row number (KRN) formation to 1 wk after silking and at physiological maturity for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 planted at 80,000 plants ha-1 in 2009. The stem volume was calculated from the maximum width of stem diameter that is 2 cm 71 above the ground level and the plant height. The CV was derived from approximately 20 individual plants of each genotype. All sampled plants were initially similar with uniform plant height and maximum width of basal stem diameter at the 4-leaftip (LT) stage. The KRN formation stage indicates approximately 100% plants reached their final KRN. The KRN formation stage for CG60, CG102 and the F1 was 11-LT, 10-LT and 11-LT stage, respectively. 72 Table 2.5. Above-ground plant dry matter (PDM) at silking (PDMs), 1 wk after silking (PDMs+1) and physiological maturity (PM) (PDMPM), the corresponding ear dry matter (EDM) with husks, cob and shank at silking (EDMs), 1 wk after silking (EDMs+1) and PM (EDMPM) and dry matter partitioning to the ear during each period for two inbred lines CG60, CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. EDMs EDMs+1 Partitioning PDMPM EDMPM Partitioning PDMs Partitioning PDMs+1 Genotype -1 -1 -1 -1 -1 to the ear to the ear to the ear (g plant ) (g plant ) (g plant ) (g plant ) (g plant ) (g plant-1) Silking 1 wk after silking CG60 0.07a 85.4b 14.8a 0.17a 67.1b 4.5a CG102 66.4b 4.4a 0.07a 88.7b 15.7a 0.17a F1 100.2a 3.5b 0.03b 113.3a 8.7b 0.08b † Different letters within a row indicate significant difference at P < 0.05. † 73 148.0b 131.7c 257.9a PM 76.7b 66.7c 152.0a 0.52b 0.51b 0.59a Table 2.6. Above-ground plant dry matter (PDMPM), grain yield (GY), harvest index (HI), kernel number per plant (KNP) as well as primary ear KNP at physiological maturity for two inbred lines CG60 and CG102 and their F1 CG60 × CG102 grown at 80,000 plants ha-1 in 2009. Genotype PDMPM (g plant-1) PDMPM (Mg ha-1) GY (g plant-1) GY (kg ha-1) HI 148.0b† CG60 11.84b 60.8b 4860b 0.41b 131.7c CG102 10.54c 44.0c 3523c 0.34c 257.9a F1 20.63a 117.3a 9386a 0.46a † Different letters within a row indicate significant difference at P < 0.05. 74 Total KNP Primary ear KNP Realized potential KNP of the primary ear (%) 288b 249b 442a 240b 249b 442a 54 46 76 140 180 160 120 PDMS+1 (g plant-1) 100 120 100 80 80 60 60 40 CG60 CG102 F1 40 CG60 at PM CG102 at PM F1 at PM 20 Grain yield (g plant-1) 140 20 0 0 20 60 100 140 180 220 260 300 340 -1 Above-ground plant dry matter (g plant ) Figure 2.17. Individual values of above-ground plant dry matter at silking (x-axis) and 1 wk after silking (PDMs+1) (primary y-axis, open symbols) and individual values of above-ground plant dry matter at physiological maturity (PM) (x-axis) and its corresponding grain yield (secondary y-axis, filled symbols) for inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown at 80,000 plants ha-1 in 2009. All sampled plants were initially similar with uniform plant height and maximum width of basal stem diameter at the 4-leaftip stage. 75 partitioning of dry matter to the ear did not reflect the plant dry matter accumulation results at silking and 1 wk after silking. The F1 exhibited lower EDMs and EDMs+1 than the two parental inbreds (Table 2.5). However, the F1 exhibited significantly higher EDM at PM (EDMPM). Consequently, it appears that partitioning of dry matter to the ear in the F1 was lower than the inbred lines at silking and 1 wk after silking but higher than the inbred lines at PM. Equally as unexpected was that percentage of potential kernel number realized appears to be more a function of PDMs rather than EDMs. Average kernel number of the primary ear per plant at PM was 240, 249, and 442 kernels, for CG60, CG102 and the F1 respectively (Table 2.6). These reflect 54%, 46%, and 76% of the potential kernel number for CG60, CG102 and the F1, respectively. 2.3.4 Effects of sampling individual plants that were not competitively bordered Sampling individual plants that were not competitively bordered will gradually dilute initial 80,000 plant ha-1. Competitively bordered plants refer to individual plants surrounded by adjacent plants under a target plant density. However, it will not affect PPV, ear and plant traits until intra-specific competition starts to limit plant growth. A previous study indicated that growth of F1 hybrid CG102 × CG108 is not resource-limited before the 14-LT stage at the 80,000 plants ha-1 (Page et al., 2010a). The exact LT-stage when the three genotypes in this study experience limited resource is unknown, due to their unequal final leaf number, phenological development and leaf area per plant to the CG102 × CG108. It should start when leaf area index is larger than 1 (Ballaré et al., 1987; Tetio-Kagho and Gardner, 1988; Page et al., 2010a). 76 The graduate dilution of initial 80,000 plant ha-1 will affect the results from late vegetative stage to TE for the three genotypes. Smith (2012) reduced intra-specific competition by thinning plants at 1 wk before silking from 74,000 to 37,000 plants ha-1. Thinning plants affected SNPE but did not affect KRN for CG60, CG102 and the F1 hybrid. Moreover, sampling individual plants at silking and 1 wk after silking will reduce the intra-specific competition at 1 wk after silking and PM for the three genotypes. It would be ideal to sample competitively bordered plants only. However, frequent samplings of 20 competitively bordered plants at the same developmental stage need large plot area and more tagged plants with similar initial plant size and development. Future studies should increase plot area and the number of tagged plants, and sample 10 competitively bordered plants at each developmental stage. 77 2.4 Conclusions The parental inbreds CG60, CG102 and their F1 were similar in phyllochron, LT-stage interval between tassel initiation and ear initiation, between ear initiation and spikelet pair meristem appearance. However, the F1 produced more SNPR GDD-1, and had a longer ear length at PM than the two inbred lines. Although the F1 and CG102 formed higher KRNmax, SNPR and potential primary KNP than CG60, the F1 achieved more KNP than both inbred lines at PM, indicating that KNP at PM was not limited by the potential KNP at the optimal density for the three genotypes. Although the F1 produced greater PDMs and PDMs+1, it had shorter ear length and less EDM than the two inbred lines at the corresponding stages. Plant-to-plant variability in early ear development from ear initiation until 1 wk after silking has not been reported in the literature. The CV of morphological traits PH, SD2, SVmax and ear trait ear length remained relatively constant for each genotype. The CV of ear traits SNPR and SNPE tended to decrease around the silking period for each genotype. The CV of SNPR was more affected than the CV of KRNmax by CV of SVmax at the KRN formation stage for the three genotypes. Starting at 13-LT (CG60), 11.5-LT (CG102) and the 12.5-LT (the F1) to 1 wk after silking and at PM, the CVs of SNPR and KRNmax were not affected by CV of SVmax for the three genotypes. While the three genotypes had similar CV of SVmax, the F1 hybrid had lower CV of SNPR and SNPE at the KRN formation stage and lower SNPR at PM than the two parental inbred lines. Otherwise, the F1 hybrid exhibited similar CVs in plant and ear morphological traits as the two inbred lines. Future studies could examine whether stress imposed during early ear development, particularly around the KRN formation stage, might 78 cause a higher PPV in ear length, SNPR, KRNmax, SNPE, which might affect the potential KNP and GY. 79 Chapter 3. Physiological Characteristics of Barrenness in Maize (Zea mays L.) 3.0 Abstract In this study, the physiological characteristics of barren plants were examined in two parental inbred lines and their F1 hybrid from canopy to subpopulation to individual plant level during the various stages of plant growth and development and dry matter partitioning. Initial uniform homogeneous plants in terms of size, development and spatial pattern were selected at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008 in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102, grown at different plant densities (40,000; 80,000; 120,000 and 160,000 plants ha-1). Growth and development of the selected individual plants and their ears were monitored and assessed during the life-cycle using an allometric methodology. Results showed that for inbred lines tested, barrenness was not caused by low carbon (C) assimilation during vegetative growth nor by low dry matter partitioning to the ear during the critical period bracketing silking; the F1 hybrid was resistant to barrenness even at 160,000 plants ha-1; trends for physiological traits or parameters in growth and development or dry matter partitioning were inconsistent and inadequate to predict the incidence of barren plants; barrenness was not totally confined to dominated (d) plants of the two parental inbred lines. The d plants are those plants in the lower one-third of the population for above-ground plant dry matter (PDM) at physiological maturity (PM) (PDMPM). This study indicates that barrenness at the individual plant level is related to the coordination among plant growth, LT development and early ear development during the vegetative growth stage. 80 3.1 Introduction Maize (Zea mays L.) is a species susceptible to barrenness under intra-specific competition (Edmeades and Daynard, 1979b; Vega et al., 2001b; Maddonni and Otegui, 2006). Ear barrenness is defined as either failure of plants to set any kernels with the development of ear structure or failure of plants to produce viable ear structure (Buren et al., 1974; Vega et al., 2001a). Past studies have associated barrenness with other physiological traits measured during the critical period bracketing silking and at PM, as well as with physiological and morphological traits (Vega and Sadras, 2003; Boomsma, 2009). The symptoms of barrenness include silk delay (Edmeades et al., 1993), longer anthesis to silking interval (ASI) (Daynard and Muldoon, 1983; Boomsma, 2009), failure of silk emergence during the pollen-shedding period (Sass and Loeffel, 1959), as well as purple stems and leaf margins (Moss, 1962). Incidence of barrenness is associated with threshold values for assimilation flux per plant 1 d after anthesis (Edmeades and Daynard, 1979a), intercepted photosynthetically active radiation per plant during the critical period bracketing silking (Andrade et al., 2000), plant growth rate during the critical period bracketing silking (PGRs) (Tollennar et al., 1992; Andrade et al., 1999) and ear growth rate during the critical period bracketing silking (EGRs) (Vega et al., 2001a; Echarte et al., 2004), and threshold values of PDMPM for harvest index (HI) (i.e., the highest PDMPM below which no kernel set occurs) (Vega et al., 2000; Liu and Tollenaar, 2009b). However, the development of barrenness in individual plants has never been characterized over an entire growing season. Barrenness could be explained as a physiological response of individual plants to intra81 specific competition induced by abiotic stress (e.g., plant density, nitrogen [N], drought and light). Furthermore, intra-specific competition generates plant hierarchy (i.e., plant individuals are ranked and assigned to different strata) within a homogenous genotype. Plant hierarchy can be classified according to the PDMPM; the “d” plants have a lower ability to compete and capture resources, while the dominant (D) plants (i.e., plants in the upper 1/3 of the PDMPM distribution) have an enhanced competitive ability for resource capture (Maddonni and Otegui, 2004, 2006). Plant hierarchy is evident at very early stages of development (ca., 4-fully emerged leaves with visible collars [V-stage, V-4]) (Maddonni and Otegui, 2004). Dominated plants are associated with reduction in grain yield (GY) and yield components, especially kernel number per plant (KNP), and lower values of physiological parameters related to growth such as PGRs, EGRs as well as morphological traits such as plant height (PH) (Maddonni and Otegui, 2004, 2006; Pagano et al., 2007; Pagano and Maddonni, 2007). Barren hybrid plants belong to approximately the lower ¼ to 1/3 of the PDMPM distribution (Vega and Sadras, 2003), or to the lower ¼ of the PDMPM distribution (Vyn and Boomsma, 2009). However, these studies considered only final PDMPM and did not investigate the development of d plants over time. Both barrenness and severity of plant hierarchy can be affected by genotype and plant density (Woolley et al., 1962; Buren, 1970; Francis et al., 1978; Edmeades and Daynard, 1979b; Iremiren and Milbourn, 1980; Daynard and Muldoon, 1983; Maddonni and Otegui, 2004, 2006; Pagano et al., 2007; Pagano and Maddonni, 2007). There were genetic variations in barrenness among hybrids (Lang et al., 1956; Earley et al., 1966; Center and Camper, 1973; Olness et al., 1990; Tollenaar et al., 1992; Cox, 1996; Westgate et al., 1997; Subedi et al., 2006), and inbreds (Zaidi et al., 2008), as well as parental inbred lines and their F1 hybrid (Sass and Loeffel, 1959; 82 Liu and Tollenaar, 2009), and variations in magnitudes and the phenological onset of plant hierarchy among hybrids (Glenn and Daynard, 1974; Bonaparte and Brawn, 1975; Echarte et al., 2000; Maddonni and Otegui, 2004, 2006). Furthermore, many studies with the exception of Lang et al. (1956) have shown that incidence of barrenness increases with plant density (Woolley et al., 1962; Genter and Camper, 1973; Edmeades and Daynard, 1979b; Daynard and Muldoon, 1983; Hashemi-Dezfouli and Herbert, 1992; Sangoi et al., 2002). Higher plant densities result in increased plant-to-plant variability (PPV) in PDM, greater differential growth in PDM between D and d plants (Edmeades and Daynard, 1979b; Vega and Sadras, 2003; Maddonni and Otegui, 2004; Pagano and Maddonni, 2007), and increased PPV of yield components (Edmeades and Daynard, 1979b; Echarte et al., 2000; Maddonni and Otegui, 2004, 2006). Previous studies have used inbred-hybrid systems to understand the physiological mechanisms affecting GY (Echarte and Tollenaar, 2006; Liu and Tollenaar, 2009; Smith, 2012). Published papers to date have not investigated the physiological characteristics of barren plants in parental inbred lines and their F1 hybrid, especially homogenous plants with similar initial growth and development, as well as uniform spatial pattern (plant-to-plant spacing). The advantage of using this system is to create different levels of variability among inbreds and hybrids. Plant-to-plant variability in traits related to kernel set is large among inbreds, the heterosis is also large (Echarte and Tollenaar, 2006; Liu and Tollenaar, 2009). The primary objective of the current work was to follow the growth and development of plants that would ultimately become barren, from the early vegetative stages through silking to maturity. This was done for two inbreds and their F1 hybrid. 83 3.2 Materials and Methods 3.2.1 Genetic materials Inbred lines CG60 and CG102, and their F1 hybrid CG60 × CG102 were used in this study. These genotypes were chosen as they have been used in other physiology and genetics studies (Echarte and Tollenaar, 2006; Khanal et al., 2011; Singh et al., 2011). CG60 is derived from Pioneer 3902 and belongs to the Iodent heterotic pattern (Lee et al., 2001a). CG102 is derived from Cycle 2 of the CG Stiff Stalk Combined population and belongs to the Stiff Stalk heterotic pattern (Lee et al., 2001b). The F1 represents one of the classic heterotic patterns grown in the Northern Corn Belt (Lee and Tracy, 2009). 3.2.2 Cultural practices and experimental design A field experiment was conducted with the three genotypes by four plant densities at the Elora Research Station near Ponsonby, ON, Canada (43º38’ N, 80º25’ W) on a London loam soil (Aquic Hapludalf) in 2007 and 2008. Before each experimental year, the experimental field was moldboard plowed in the fall of previous year. The preceding crop was red clover (Trifolium pratense L.) in 2007 and barley (Hordeum vulgare L.) in 2008. Tillage in the following spring included disking and cultivation twice with a cultivator, as well as cultipacking for seed-bed preparation. Treatments were arranged in a split-plot design with three replications in both years. Plant density served as the main plot and genotype as the sub-plot. This design was used to organize individual plants and make measurement easy, and individual variations in resource availability were created by varying plant density. Rows were in a northeast to southwest orientation in both years. In 2007 and 2008, the experimental plots received 500 kg ha-1 of 2084 10-10 (N–P–K) before planting. Ammonium nitrate (34–0–0) at 100 kg ha-1 N was sidedressed as a single band at the 12-LT stage of the F1 hybrid. Weeds were controlled with pre-planting herbicides of a mixture of 3-4 L ha-1 Primestra II Magnun, which includes S-metolachlor [Acetamide, 2-chloro-N-(2-ethyl-6-methylphenyl)-N-(2-methoxy-1-methylethyl]-,(S)] and atrazine (2-chloro-4-ethylamino-6-isopropylamino-s-triazine), and 0.3 L ha-1 Callisto, which includes mesotrione [2-[4-(methylsulfonyl)-2-nitrobenzoyl]-1,3-cyclohexanedione]. No postemergence herbicide was applied. The three genotypes were over-sown with hand planters on 11 May 2007 and 16 May 2008. Daily values of minimum and maximum air temperatures, rainfall and incident solar radiation were recorded from planting until final harvest using a weather station at the Elora Research Station. Accumulated growing degree days (GDD) were calculated as equation [2.1] using daily mean air temperature and a base temperature of 8 C from planting to different phenological stages (Wang, 1960; Major et al., 1983; Ritchie and NeSmith, 1991). 3.2.2.1 Field experiment in 2007 In 2007, each plot consisted of six rows of 12 m in length and 0.76-m row spacing, with a 0.7-m planted border at each end. Plants were thinned to the target plant densities at the 8-LT stage, resulting in 40,000 plants ha-1 (i.e., half commercial density) and 120,000 plants ha-1 (one and a half times commercial density) for the two inbreds; and 40,000 plants ha-1 and 160,000 plants ha-1 (i.e., double commercial density) for the F1. The reason to use 160,000 plants ha-1 for the F1 instead of 120,000 plants ha-1 was to trigger barrenness in the F1 plants. This was based 85 on previous findings that hybrids are less susceptible than their parental inbreds to barrenness under high plant densities (Liu and Tollenaar, 2009b). Within each plot, the middle four rows were used for destructive sampling (each 1.00 m2) at the front of the plot and non-destructive measurement (7.90 m2) at the back of the plot. Destructive samplings were conducted according to numbers of plants. A 0.7-m long internal plant border separated two subsequent destructive sampling areas, as well as between the destructive sampling areas and the non-destructive measurement area. 3.2.2.2 Field experiment in 2008 In 2008, each plot consisted of five rows with 13-m length and 0.76-m row spacing with 1-m planted border at each end. Plants were thinned at the 4-LT stage to achieve 80,000 plants ha-1, 120,000 plants ha-1 and 160,000 plants ha-1 for each genotype. Within each plot, the second row from northwest was used for destructive sampling (each 1.33 m2) at the front of the plot and the middle three rows were used for non-destructive measurement (3.92 m2) at the back of the plot separated by a 0.6-m internal border. Between two successive destructive sampling areas was a 0.6-m long plant border. 3.2.2.3 Morphometric methodology and measurement Dry matter accumulation of individual plants over time can be estimated by making sequential non-destructive morphometric measurements on those plants, and then using allometric relationships to calculate PDM at each time point. The allometric relationships between the morphometric measurements and PDM are derived from destructive harvests of 86 other plants in the population at each time point (Weiner et al., 1990; Vega et al., 2001b). Incorporating destructive and non-destructive measurements in this way, PDM and ear dry matter (EDM) have been predicted in previous studies (Vega et al., 2001b; Maddonni and Otegui, 2004; Echarte and Tollenaar, 2006; Borrás et al., 2007). The destructive sampling area and the non-destructive measurement area were marked and separated with border plants, and uniform plants in the non-destructive area could be selected and tagged at a certain growth stage. Individual plants from the destructive area were measured and harvested to generate morphometric data and PDM or/and EDM, and tagged plants from the non-destructive area were measured without harvest until PM. Subsequently, the best allometric models between PDM/EDM and morphometric data were developed from the destructive samplings, and then used to estimate PDM/EDM for the corresponding genotype and phenological stage. The destructive samplings and non-destructive measurements for each genotype × plant density combination took place on the same day during maize development including approximately 8LT, 12-LT, 16-LT, silking and 2 wk after silking in 2007, and 12-LT, 15-LT, silking and 2 wk after silking in 2008. 3.2.2.4 Destructive samplings At each sampling, LT stage, PH (i.e., the distance from the ground level to the uppermost leaf collar, in cm), the maximum width of basal stem diameter (SDb, in cm), the maximum width of stem diameter 2 cm above the ground level (SD2, in cm) (only in 2008) and maximum primary ear diameter including husks (ED, in cm) at silking and 2 wk after silking for each sampled plant were measured and recorded. Maximum PH (MaxPH) was determined at 2 wk after silking. All 87 SDb, SD2 and ED measurements were taken using RK 97231-34 digital callipers (Cole-Parmer Canada Inc., Montreal, QC). After measurement, the above-ground parts of the plants were cut and oven dried at 80 C until reaching a constant weight to quantify PDM. At silking and 2 wk after silking, the primary ear including husks and shank was separated and individually weighed for EDM. In summary, the following numbers of plants were harvested at each sampling: four plants per replicate at 40,000 plants ha-1, 12 plants per replicate for the two inbreds at 120,000 plants ha-1, and 16 plants per replicate for the F1 at 160,000 plants ha-1 in 2007. In 2008, 10, 16 and 20 plants per replicate were sampled at 80,000; 120,000 and 160,000 plants ha-1, respectively. In 2008, the harvested plant samples including ears at 120,000 plants ha-1 were lost for CG60 and the F1 at silking and CG102 at 2 wk after silking. The sampled plants were used to develop morphometric relationships between PDM and stem volume (SV, in cm3) as a cylinder before silking. At silking and 2 wk after silking, the relationships predicted PDM from SV and ED, as well as EDM from ED. In 2008, the selection of the SDb or SD2 depended on the higher coefficient of determination (R2) of the relationship. The SV derived from SDb and SV derived from SD2 (SVmax) were calculated as: SV = π × PH× (0.5 × SDb)2 (Maddonni and Otegui, 2004) SVmax = π × PH × (0.5 × SD2)2 [3.1] [3.2] 3.2.2.5 Non-destructive measurements In the non-destructive measurement area, plants at the same LT stage and visually similar in terms of PH and SDb were chosen and tagged at the 8-LT stage in 2007 and 4-LT stage in 2008 and followed until PM. In 2007, eight plants per replicate were tagged for each genotype at 40,000 plants ha-1, 16 plants per replicate for the two inbreds at 120,000 plants ha-1 and 20 plants 88 per replicate for the F1 at 160,000 plants ha-1. In 2008, eight, 20 and 24 plants per replicate per genotype were tagged at 80,000; 120,000 and 160,000 plants ha-1, respectively. For each genotype × plant density combination, the same measurements were conducted on the tagged plants on the same day. Anthesis and silking dates for each tagged plant were recorded. Anthesis date was noted when at least one anther extruded from a tassel, and silking was recorded when one silk emerged from a primary ear. Antheis to silking interval (i.e., the difference in days between anthesis and silking) and the GDD from planting to silking (GDDsilking) were calculated for each tagged plant when it was available. Average flowering dates for each genotype × plant density × year combination were based on the date when 50% of the plants in the plots across three replications were at anthesis and silking. Length and the maximum width of each green leaf were measured at approximately 1 wk after silking on each tagged plant in 2007. The individual leaf area was calculated as leaf length multiplied by maximum leaf width and 0.75 (Montgomery, 1911). Post-silking leaf area per plant (PSLA) was the sum of each individual leaf area. In 2008, the same measurements were taken at approximately 2 wk after silking on each tagged plant in replication 2, whereas only the primary ear leaf (ca., the leaf subtending the primary ear) of the tagged plant was measured in replications 1 and 3. The largest leaf is usually within one rank of the primary ear leaf (Fournier and Andrieu, 1998), and the maximum plant leaf area is strongly correlated with mature leaf area of the largest leaf per plant (Dwyer and Stewart, 1986). Therefore, the PSLA in replication 1 and 3 was estimated by using allometric functions between the primary ear leaf area (LAE) and PSLA 89 determined in replication 2 (Table 3.1). The ratio between length and the maximum width of the largest leaf was calculated for each tagged plant. 3.2.2.6 Harvest at physiological maturity At PM, each tagged plant in the non-destructive measurement areas was harvested and oven dried at 80 ºC until the plant reached a constant weight to quantify PDMPM. Physiological maturity is determined when a black layer is developed in kernels (Daynard and Duncan, 1969). Both the primary and secondary ears were shelled to obtain GY. Plants with a GY of zero g were considered barren. Total KNP including the secondary ear kernel number was counted by seed counter. In 2008, the PDM without husks and shank was weighed for eared plants. The PDMPM was adjusted by adding a husk percentage (including the shank) of PDMPM into the PDM without husks for eared plants of each genotype. Ear dry matter at PM (EDMPM) is PDMPM minus the vegetative PDM at PM. In 2007 and 2008, the PDMPM was partitioned into same components, and HI was calculated as the ratio between GY and PDMPM. 3.2.3 Selection of allometric models 3.2.3.1 Comparison of models with an intercept and without an intercept for above-ground plant dry matter Most published allometric models in maize (Borrás and Otegui, 2001; Maddonni and Otegui, 2004; Pagano and Maddonni, 2007; Pagano et al., 2007) have estimated PDM as a linear function of SV in equation [3.3] during vegetative stages and as non-linear function of SV and ED in equation [3.4] during reproductive stages. 90 Table 3.1. Relationships between post-silking leaf area per plant (PSLA) and primary ear leaf area (LAE) for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 in 2008. Genotype Relationship n R2 P value CG60 PSLA = 6.82 × LAE + 634.33 50 0.55 <.0001 CG102 PSLA = 8.73 × LAE – 1254.15 52 0.55 <.0001 F1 PSLA = 7.82 × LAE – 9.82 49 0.88 <.0001 91 PDM = a + b × (SV or SVmax) (Maddonni and Otegui, 2004) [3.3] PDM = a + b × (SV or SVmax) + c × ED2 [3.4] (Borrás and Otegui, 2001) Where a, b and c are model parameters and PDM has units of g plant-1. However, they did not explain reasons for including an intercept in the model. When estimating plant growth in a natural manner, zero SV means zero PDM. Therefore, a model with an intercept is not expected. In this study, the model with an intercept was compared with a model without an intercept for each genotype × plant density combination in 2007 and 2008. The model selection criteria were R2 (models with an intercept) and Efron's pseudo-R2 in equation [3.5] (models without an intercept) as the primary criterion and the root mean squared error (RMSE) (i.e., the square root of mean squared error which is the average of the squared differences between each predicted value and its corresponding measured value) as the secondary criterion. Efron's pseudo-R2 = 1 – Sum of squares for residuals (Efron, 1978) Corrected total sum of squares [3.5] The advantage of Efron's pseudo-R2 statistic is that it is same as R2 based on the ratio between explained sum of squares and total sum of squares for both linear and non-linear regression. 3.2.3.2 Comparison of combined plant density model to individual plant density model for above-ground plant dry matter Before analyzing each genotype × plant density combination for allometric relationship, the genotype × plant density interaction was tested in terms of the allometric relationship for estimating PDM by performing analysis of variance using PROC GLM procedure of SAS. The SV/SVmax was used as a covariate when the allometric relationships fit linear function. The 92 SV/SVmax and ED2 were used as covariates when allometric relationship fit non-linear function. The interaction was tested at each sampling stage for CG60 and CG102 in 2007 and for the three genotypes in 2008. The F1 hybrid in 2007 could not be used due to the unequal plant density with the two inbred lines. Almost all the published allometric models (Appendix A.1) (Borrás and Otegui, 2001; Vega et al., 2001b; Maddonni and Otegui, 2004; Echarte and Tollenaar, 2006; Pagano and Maddonni, 2007; Pagano et al., 2007; D’Andrea et al., 2008) have combined plant densities to estimate PDM without justification. In order to examine whether combined plant density is statistically better than individual plant densities, an allometric relationship with an intercept was developed for each genotype × year combination by using data combined across plant densities and also for each individual plant density. Year was considered as a random factor. The selection criteria were R2 and RMSE. If combined plant density models had better performance than individual plant density models, models with combined plant density were further checked to examine whether they caused statistically significant bias; that is, whether there was a significant tendency to overestimate or underestimate biomass at one plant density compared to another plant density. This was done in two steps. The first step was to calculate the residual percentage (RP) using equation [3.6] and check whether the mean RP of individual plant densities within the combined plant density model differ significantly by using the Lsmeans statement with the pdiff option in the PROC GLM procedure. RP = Measured PDM - predicted PDM × 100% Measured PDM [3.6] If there was no significant difference in RP between/among individual plant densities within the 93 combined plant density model, the plant densities could be combined for model estimation. Second, when the RP between/among different plant densities was significantly different, the RP of a plant density derived from the combined plant density model was compared to that of the same plant density derived from an individual plant density model by using the Lsmeans statement with the pdiff option in the PROC GLM procedure. In addition, in some cases in 2007 the range of data derived from destructive harvests, used to develop the morphometric relationships, was not sufficient to permit prediction of PDM for all non-destructively-sampled plants without extrapolation. In these cases additional plants from border rows were also included in the development of the morphometric relationships, to increase the range of PDM values. The models using plants in central rows only were compared with the corresponding models using plants in both central and border rows based on R2 and RMSE; in two cases the new model was rejected because of a reduction in R2. After model justification, the PDM for each tagged plant from the corresponding genotype × sampling stage × year combination was estimated using the allometric relationship in Table 3.2. 3.2.3.3 Selection of allometric models for ear dry matter When estimating the relationship between EDM and ED, most of the published studies have either used an exponential function [3.7] (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007; Pagano et al., 2007) or a power function [3.8] (Vega et al., 2001a; D’Andrea et al., 2008) without justification. EDM = a × eb × ED (Maddonni and Otegui, 2004) 94 [3.7] Table 3.2. Relationships between above-ground plant dry matter (PDM) and morphological variables (i.e., stem volume [SV], maximum primary ear diameter [ED]) at different phenological stages for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 with a combination of plant densities in 2007 and 2008. A combination of 40,000 and 120,000 plants ha-1 for the two parental inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid was analysed in 2007. In 2008, a combination of 80,000, 120,000, and 160,000 plants ha1 for the three genotypes was analysed with three exceptions of a combination of 80,000 and 160,000 plants ha-1 marked by symbol †. Stem volume calculated from maximum width of basal stem diameter and the maximum width of stem diameter that is 2 cm above the ground level are presented by SV and SVmax, respectively. Vegetative phases are assessed by leaftip (LT) stage. All relationships are significant at P value ≤0.0001. Stage Genotype PDM (g plant-1) n R2 RMSE‡ (g plant-1) 2007 8-LT CG60 CG102 PDM = 0.1313 + 0.1406 × SV PDM = 0.7051 + 0.0767 × SV 49 46 0.87 0.67 0.31 0.25 F1 CG60 CG102 PDM = 1.3827 + 0.0864 × SV PDM = 3.8361 + 0.1114 × SV PDM = 1.7306 + 0.1424 × SV 59 78 81 0.79 0.62 0.82 0.37 2.11 1.50 F1 CG60 CG102 PDM = 3.0492 + 0.1666 × SV PDM = 6.6085 + 0.1543 × SV PDM = 15.6901 + 0.0921 × SV 89 124 47 0.87 0.80 0.60 2.27 5.86 4.43 F1 PDM = 16.1478 + 0.1037 × SV 59 0.79 6.99 47 0.91 6.96 48 0.78 8.03 Year 12-LT 16-LT Silking 2 wk after silking 2008 12-LT ‡ 15-LT Silking 2 wk after silking 2 CG60 PDM = 7.7169 + 0.0823 × SV + 5.2570 × ED CG102 F1 2 PDM = 26.3628 + 0.0568 × SV + 3.4244 × ED PDM = 9.7473 + 0.1179 × SV + 2.0079 × ED 2 59 0.92 10.98 PDM = -13.2830 + 0.1517 × SV + 3.2674 × ED 2 48 0.88 13.02 PDM = -10.6016 + 0.1150 × SV + 4.2827 × ED 2 47 0.94 12.91 F1 CG60 CG102 PDM = -15.2232 + 0.1177 × SV + 3.9640 × ED PDM = 1.6726 + 0.1708 × SV PDM = 2.7286 + 0.1451 × SV 2 59 130 138 0.97 0.90 0.77 9.19 0.89 1.68 F1 PDM = 5.1469 + 0.1267 × SV 137 0.88 2.03 CG60 CG102 PDM = 5.8417 + 0.0987 × SVmax PDM = 6.5137 + 0.1269 × SV 123 129 0.90 0.83 3.64 5.00 F1 PDM = 10.0872 + 0.0868 × SVmax 137 0.85 7.29 CG60 CG102 CG60 † CG102 † F1 2 PDM = 14.5622 + 0.1010 × SV + 1.7029 × ED 90 0.86 8.31 2 129 0.77 8.78 2 87 0.88 9.41 98 0.94 7.82 64 0.87 8.45 123 0.94 10.69 PDM = 28.8064 + 0.0665 × SVmax + 1.9316 × ED PDM = -2.9125 + 0.1028 × SVmax + 1.5995 × ED 2 CG60 PDM = 2.2597 + 0.1495 × SV + 1.6293 × ED CG102† PDM = 25.0479 + 0.1122 × SVmax + 1.7011 × ED2 F1 PDM = -18.0256 + 0.1104 × SVmax + 3.6589 × ED RMSE, root mean squared error. 95 2 EDM = a × EDb (Vega et al., 2001a) [3.8] Where a and b are model parameters and EDM has units of g plant-1. Moreover, they used combined plant densities to estimate EDM. In order to choose the allometric relationship between EDM and ED, the exponential function and power function were compared for each genotype × plant density × year combination. After selection between the exponential and power function, the genotype × plant density interaction was tested in terms of the allometric relationship for EDM estimation by comparing parameters a and b using PROC NLIN of SAS procedure. Significant interaction is indicated when 95% confident intervals for a parameter (a or b) among different treatments do not overlap. The interaction was tested at silking and 2 wk after silking for CG60 and CG102 in 2007, and for the three genotypes in 2008. When there was significant genotype × plant density interaction, each genotype × plant density combination was analyzed. Comparison in performance was made between models using combined plant density and models using each individual plant density for each genotype × year combination based on R2 and RMSE. If using the combined plant density model was better than using each individual plant density model, the same two justification steps were taken as for the PDM estimation to check whether models using combined plant density caused statistically significant bias for EDM estimation between/among individual plant densities. After model justification, the EDM for each tagged plant from the corresponding genotype × sampling stage × year combination was estimated using the allometric relationship in Table 3.3. 96 Table 3.3. Relationships between ear dry matter (EDM) and maximum primary ear diameter (ED) at silking and 2 wk after silking for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 with individual plant densities or a combination of different plant densities in 2007 and 2008. When using combined plant densities, a combination of 40,000 and 120,000 plants ha-1 for CG60 and 40,000 and 160,000 plants ha-1 for the F1 hybrid was analysed in 2007. In 2008, a combination of 80,000 and 160,000 plants ha-1 for the three genotypes was analysed. All relationships are significant at P value ≤0.0001. Year Stage 2007 Silking Genotype Plant density EDM (g plant-1) (plants ha-1) n R2 RMSE† (g plant-1) CG60 40,000 EDM = 0.0844 × ED4.0395 11 0.95 0.10 3.5412 34 0.95 0.14 4.3106 12 0.95 0.10 EDM = 0.0450 × ED 5.4919 34 0.83 0.40 EDM = 0.2344 × ED 3.4047 58 0.93 0.29 3.7680 48 0.89 0.17 2.3582 12 0.91 0.13 EDM = 0.2735 × ED 3.2521 36 0.87 0.20 EDM = 0.1960 × ED 3.5478 60 0.92 0.18 EDM = 0.3403 × ED 2.6014 26 0.52 0.48 Combined EDM = 0.4204 × ED 2.4611 80 0.78 0.32 80,000 EDM = 0.1630 × ED3.4952 26 0.91 0.24 EDM = 0.1448 × ED 3.9286 42 0.93 0.29 160,000 EDM = 0.2274 × ED 3.4832 52 0.94 0.33 Combined EDM = 0.4131 × ED2.8400 89 0.63 0.21 80,000 EDM = 0.1110 × ED 4.0868 28 0.52 0.41 120,000 EDM = 0.0511 × ED4.6142 31 0.82 0.30 160,000 EDM = 0.2826 × ED 2.7966 32 0.89 0.29 Combined EDM = 0.2743 × ED3.4125 63 0.93 0.26 80,000 EDM = 0.5838 × ED 2.8448 29 0.80 0.10 120,000 EDM = 0.2614 × ED3.3146 40 0.84 0.16 160,000 3.2902 56 0.97 0.12 120,000 CG102 40,000 120,000 2 wk after silking F1 CG60 CG102 Combined Combined 40,000 120,000 F1 2008 Silking CG60 CG102 Combined 80,000 120,000 2 wk after silking F1 CG60 CG102 F1 † EDM = 0.1743 × ED EDM = 0.0844 × ED EDM = 0.1162 × ED EDM = 1.2309 × ED EDM = 0.3144 × ED RMSE, root mean squared error. 97 3.2.4 Data analyses In some genotype × year combinations (CG60 in 2007 and F1 in 2007) no barren plants were observed among the non-destructively harvested plants. Data from these genotype × year combinations were not further examined. In all other cases, data within a genotype × year were combined across the different plant densities and the final GY, PDMPM, HI and KNP were tested for normality using the Shapiro-Wilk test statistic W of the PROC UNIVARIATE procedure of SAS package version 9.2 (SAS Institute, 2008, Cary, NC, USA). The same procedure was used to calculate mean, coefficient of variation (CV), skewness and kurtosis. Before estimating the linear relationship (i.e., equation [3.3]) between PDM before silking and SV (and SVmax) by using the PROC REG procedure of SAS, the data points with studentized residuals (i.e., the unstandardized residual divided by its standard deviation [SD]) equal to or larger than 3 were identified and removed as outliers. Similarly, outliers were identified and removed with the same criterion before estimating the relationship between PDM at silking (PDMs) or 2 wk after silking (PDMs+2) and corresponding morphometric variables in equation [3.4] by nonlinear regression using the PROC REG procedure of SAS. Similarly using the PROC REG procedure, the outliers were identified and removed before estimating the relationships between EDM and ED (i.e., equation [3.8]) for each genotype × sampling stage × year combination. Plant dry matter ratio is calculated as PDM ratio = PDM of an individualbarren plant PDM of the average of a plant stand [3.9] Due to the relatively small number of barren plants within each genotype × plant density × year combination and the potential violation of the normal distribution assumption for 98 parametric tests, non-parametric tests were conducted for mean comparisons. Comparison between barren and non-barren plants in PDMPM, PDM, EDMPM and EDM throughout development for CG102 at 120,000 and 160,000 plants ha-1 in 2008 and CG60 at 160,000 plants ha-1 in 2008 were conducted by using the Wilcoxon rank sum test, via the PROC NPAR1WAY procedure of SAS. Using the same SAS procedure, comparisons between barren and non-barren plants in the LT stage and PH at each sampling stage were conducted. The comparison between average barren plants and average plants of a population could not be conducted due to relatedness of barren plants to the whole population. Plant growth rate during the critical period bracketing silking was calculated for each individual plant within a genotype by regressing estimated PDM (dependent variable) against the corresponding thermal time (independent variable) in the linear portion of PDM accumulation during the period bracketing silking. Each individual plant had three data points to fit the linear regression. The linear portions of PDM accumulation during the period bracketing silking were between 524 and 850 GDD for the three genotypes in 2007, and between 550 and 846 GDD for CG60 and the F1, and between 550 and 976 GDD for CG102 in 2008, respectively. Ear growth rate during the period bracketing silking for each individual plant was calculated as the quotient of EDM from silking to 2 wk after silking and the corresponding duration in GDD. The linear relationships between EDM at silking (EDMs) and ASI, and between EDMs and GDDsilking for individual plants were established by using the PROC REG procedure of SAS. The normality of residuals and heteroscedasticity were tested before conducting regression analyses. Nonlinear relationships between HI and PGRs, and between HI and EGRs were analyzed 99 by using the PROC NLIN procedure of SAS based on a previous publication (Tollenaar et al., 2006). By comparing the two models presented by Echarte and Andrade (2003), the hyperbolic function was chosen between HI and PGRs and HI and EGRs because the other function estimated biologically non-meaningful parameters for each genotype × year combination. HI = a (PGRs PGRt) 1 b (PGRs PGRt) [3.10] HI = a (EGRs EGRt) 1 b (EGRs EGRt) [3.11] Where a is the initial slope of the curve, b the degree of curvilinearity of the model and PGRt and EGRt represent the threshold values of PGRs and EGRs for HI, respectively (i.e., the values of PGRs or EGRs below which the model predicts HI to be zero). 3.2.4.1 Classification of four subpopulations according to barrenness and plant hierarchy For each genotype × plant density combination where at least one barren plant was present, two methods could be used to classify individual plants. In one method, GY can be used to classify barren and non-barren plants. The other method is that PDMPM are sorted in ascending order, then the D plants belong to the upper 1/3 of the PDMPM distribution, the d plants belong to the lower 1/3 of the PDMPM distribution (Maddonni and Otegui, 2004, 2006) and the intermediate plants belong to the middle 1/3 of the PDMPM distribution. By combining the two classification methods, individual plants within a genotype × plant density were divided into barren d (Bd) plants, non-barren d (NBd) plants, barren plants that belonged to the intermediate and D groups (BID), and non-barren plants that belonged to the intermediate and D groups (NBID). 100 Differences in GY and MaxPH among d, intermediate and D plants were compared by using Kruskal-Wallis test, via PROC NPAR1WAY procedure of SAS, due to the violation of normal distribution of GY and MaxPH data in some d, intermediate and D groups. Differences in various physiological traits between Bd and NBd plants, and among Bd, BID and NBd plants were compared by using the Wilcoxon rank–sum test and Kruskal-Wallis test, respectively. Both statistics used the PROC NPAR1WAY procedure of SAS. The physiological traits included PDMPM, EDMPM, and PDM throughout development, phenological differences as well as EDM, ASI, GDDsilking, PGRs, EGRs and the ratio between EGRs and PGRs as partitioning index (Pagano and Maddonni, 2007). Similarities in plant and ear growth between Bd and NBd, between BID and NBd and between Bd and BID were checked. The criteria for similarity between two individual plants in a physiological trait was a difference equal to or less than 0.3 g, 0.15 g, 0.01 g GDD-1, 0.005 g GDD-1 and 0.01 for PDM, EDM, PGRs, EGRs and partitioning index, respectively. The chosen criteria were arbitrary. 3.2.4.2 Frequency distribution of the physiological and morphological traits Similarly to yield components at PM, physiological and morphological traits were selected to characterize barrenness. They included the ratio between PDMPM and MaxPH; MaxPH; stem elongation rate; ear diameter expansion rate; PSLA; the largest leaf area; and the ratio between leaf length and maximum leaf width (leaf length/leaf width) of the largest leaf. The stem elongation rate was calculated for each individual plant within a genotype by regressing PH (dependent variable) against the corresponding thermal time (independent variable) in the linear portion of stem elongation. Stem elongation was between 409 and 680 101 GDD for the three genotypes in 2007, and between 377 and 759 GDD for CG60 and the F1 in 2008 and between 377 and 830 GDD for CG102 in 2008. Ear diameter expansion rate was calculated as the difference in the ED at silking and 2 wk after silking divided by the corresponding GDD in 2007, and the difference in ED between 1 wk after silking and 3 wk after silking divided by the corresponding GDD in 2008. The data were analyzed by the PROC UNIVARIATE procedure of SAS to test normality and calculate mean, CV, skewness and kurtosis. Due to the non-normality in leaf length/leaf width of the largest leaf for CG102 in 2008, differences in this trait among genotypes were tested by Kruskal-Wallis test, via PROC NPAR1WAY procedure of SAS. Differences among plant densities as main plot effects were tested by analysis of variance of leaf length/leaf width of the largest leaf using the PROC GLM procedure of SAS for CG60 and the F1 hybrid with replication × plant density as the error term. Differences in the same trait were tested by Kruskal-Wallis test, via PROC NPAR1WAY procedure of SAS for CG102. 102 3.3 Results 3.3.1 Ultimately barren plants at physiological maturity 3.3.1.1 Occurrence of barrenness Barrenness in this study refers to the plants with zero final GY. Occurrence of barrenness varied by year and genotype. Barrenness occurred in both years only for CG102 (Fig. 3.1). Barrenness occurred in 2008 for CG60 and the F1 hybrid as well. In 2008, even though the three genotypes were planted across the same three plant densities, CG102 exhibited an exceptionally high percentage of barrenness (56%) compared to CG60 (10%) and the F1 hybrid (1%). In terms of barrenness at each genotype × plant density × year combination, barren plants occurred in one out of the six genotype × plant density combinations in 2007, which was CG102 at 120,000 plants ha-1 (three out of 70 plants). Barren plants occurred in six out of nine genotype × plant density combinations in 2008, which were CG102 at 80,000 plants ha-1 (six out of 24 plants), 120,000 plants ha-1 (23 out of 59 plants) and 160,000 plants ha-1 (58 out of 72 plants); CG60 at 120,000 plants ha-1 (four out of 60 plants) and 160,000 plants ha-1 (14 out of 71 plants); and the F1 at 160,000 plants ha-1 (one out of 70 plants). 3.3.1.2 The position of ultimately barren plants within a plant population The barren CG102 plants were present only in the below-average (mean = 139.7 g plant1 ) categories of PDMPM in 2007 (Fig. 3.2), and in both above- and below-average (mean = 82.4 g plant-1) categories of PDMPM in 2008. Barren CG60 plants were present in below-average (mean = 88.7 g plant-1) categories of PDMPM in 2008. The barren F1 plant was in the lowest categories of PDMPM in 2008. 103 120 CG102 in 2007 Grain yield frequency Frequency of barren plants KNP 100 500 40 80 400 30 60 300 20 40 200 10 20 100 50 Number of individual plants 600 CG102 in 2008 0 0 0 60 28 56 84 112 0 0 140 60 CG60 in 2008 13 26 40 53 66 79 92 106 119 132 600 F1 in 2008 50 50 500 40 40 400 30 30 300 20 20 200 10 10 100 0 0 0 22 44 66 88 110 0 0 132 KNP 60 17 34 51 68 85 102 119 136 Grain yield (g plant-1) Figure 3.1. Frequency distributions of grain yield (GY)(primary y-axis), and the relationship between kernel number per plant (KNP) (secondary y-axis) and GY in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. Dark grey bars indicate the frequency of ultimately barren plants (i.e., GY per plant = 0 g). Circles indicate KNP. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. In terms of frequency distribution of GY, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.00, skewness = 0.08, kurtosis = -0.92, coefficient of variation (CV) = 70%, and mean (M) = 38.4 g plant-1. For CG60 in 2008 (n = 154): Pr < W = < 0.0001, skewness = 0.03, kurtosis = -0.90, CV = 68% and M = 29.3 g plant-1. For CG102 in 2008 (n = 155): Pr < W = <0.0001, skewness = 1.58, kurtosis = 1.04, CV = 176%, and M = 8.2 g plant-1. For the F1 in 2008 (n = 153): Pr < W = 0.08, skewness = 0.14, kurtosisK = -0.23, CV = 32%, and M = 78.1 g plant-1. 104 0.6 CG102 in 2008 CG102 in 2007 Number of individual plants 50 PDMPM frequency Frequency of barren plants HI 0.5 40 0.4 30 0.3 20 0.2 10 0.1 0.0 0 3 60 53 103 153 203 253 20 303 56 92 128 164 200 236 272 308 F1 in 2008 CG60 in 2008 0.6 50 0.5 40 0.4 30 0.3 20 0.2 10 0.1 0 HI (g g-1) 60 0.0 20 64 108 152 196 240 284 29 59 89 119 149 179 209 239 269 299 Above-ground plant dry matter at physiological maturity (g plant-1) Figure 3.2. Frequency distributions of above-ground plant dry matter at physiological maturity (PDMPM) (primary y-axis), and the relationship between harvest index (HI) (i.e., ratio between grain yield and PDMPM) (secondary y-axis) and PDMPM in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. Dark grey bars indicate the frequency of ultimately barren plants (i.e., grain yield per plant = 0 g). Circles indicate HI. The plant densities in 2007 were 40,000 and 120,000 plants ha1 for the two inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. In terms of frequency distribution of PDMPM, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.00, skewness = 0.35, kurtosis = -1.08, coefficient of variation (CV) = 40%, and mean (M) = 139.7 g plant-1. For CG60 in 2008 (n = 154): Pr < W = 0.00, skewness = 0.61, kurtosis = 0.17, CV = 39% and M = 88.7 g plant-1. For CG102 in 2008 (n = 155): Pr < W = 0.57, skewness = 0.30, kurtosis = 0.21, CV = 28%, and M = 82.4 g plant-1. For the F1 in 2008 (n = 153): Pr < W = 0.01, skewness = 0.46, kurtosis = -0.25, CV = 30%, and M = 166.8 g plant-1. 105 3.3.1.3 Relationships between yield components The two inbred lines had linear relationships between GY and KNP (R2 ≥ 0.95) (Fig. 3.1), with the GY of the F1 hybrid following a quadratic function (R2 ≥ 0.75). The F1 was characterized by greater fidelity in HI compared to the two parental inbred lines which had more plants with similar PDMPM but contrasting HI (Fig. 3.2). When comparing the barren inbred plants to the non-barren inbred plants with similar PDMPM, the range of HI was from 0.04 to 0.29 for non-barren CG102 plants in 2007, from 0.002 to 0.45 for non-barren CG102 in 2008, and from 0.01 to 0.51 for non-barren CG60 in 2008. In extreme cases, a barren (75.1 g) and a non-barren (76.7 g) plant had similar PDMPM but 0.00 and 0.29 HI respectively for CG102 in 2007, as also observed for CG102 in 2008 (86.2 g with 0.00 HI vs. 86.3 g with 0.45 HI), and CG60 in 2008 (72.4 g with 0.00 HI vs. 72.0 g with 0.51 HI). Both barren and non-barren plants within a genotype had similar initial plant size and development and uniform spatial pattern, but it is unclear what resulted in the barrenness and variations in dry matter partitioning (i.e., HI). Understanding season-long physiological processes of plant growth and dry matter partitioning will help us understand the physiological mechanisms underlying barrenness. First, allometric models were developed to estimate individual plant and ear growth throughout the life cycle. 3.3.2 Allometric model development to predict individual barren and non-barren plants 3.3.2.1 Model comparison for above-ground plant dry matter estimation The models with intercepts outperformed the models without intercepts, with higher R2 and lower RMSE in 16 out of 30 genotype × plant density combinations in 2007 (e.g., F1 at 160,000 plants ha-1 at 9-LT stage [Fig. 3.3]) and 14 out of 33 combinations using SV in 2008 106 With intercept 10 Without intercept -1 -1 F1 at 160,000 plants ha at 9-LT in 2007 PDM = 0.1515 × SV PDM = 1.2966 + 0.0926 × SV 2 n = 48 R = 0.78 RMSE = 0.36 -1 Measured PDM or predicted PDM in non-destructive measurement area (g plant ) F1 at 160,000 plants ha at 9-LT in 2007 2 n = 48 Efron's pseudo-R = 0.42 RMSE = 0.58 8 6 4 Destructive area Non-destructive area 1:1 line 2 0 0 200 2 4 6 8 10 0 2 4 6 8 10 -1 -1 CG60 at 120,000 plants ha at 2 wk after silking in 2007 CG60 at 120,000 plants ha at 2 wk after silking in 2007 2 PDM = -7.2935 + 0.1183 × SV + 3.4951 × ED 2 PDM = 0.1198 × SV + 2.9901 × ED 2 n = 36 Efron's pseudo-R = 0.86 RMSE = 9.02 2 n = 36 R = 0.86 RMSE = 9.03 150 100 50 0 0 50 100 150 200 0 50 100 150 200 -1 Predicted PDM in destructive sampling or non-destructive measurement area (g plant ) Figure 3.3. Selective comparison of allometric models with an intercept and without an intercept for F1 hybrid CG60 × CG102 at 160,000 plants ha-1 at the 9-leaftip (LT) stage and inbred CG60 at 120,000 plants ha-1 at 2 wk after silking in 2007. The allometric model estimates the relationship between above-ground plant dry matter (PDM) and stem volume (SV) at vegetative stages or between PDM and SV and maximum primary ear diameter (ED) at reproductive stages. The round symbols (○) represent the relationship between measured PDM in destructive sampling areas and corresponding predicted PDM. The triangle symbols (Δ) present the values of predicted PDM in non-destructive measurement areas in the 1:1 line. The vegetative stages are presented as the average LT stage across sampled plants. Number of sampled plants (n), coefficient of determination (R2), Efron's pseudo-R2 and root mean squared 107 error (RMSE) in g plant-1 are presented. Efron's pseudo-R2 = 1 – (sum of squares for residuals/corrected total sum of squares). 108 (e.g., CG102 at 160,000 plants ha-1 at 10-LT stage [Fig. 3.4]). The two models had similar R2 and RMSE in seven out of 30 combinations in 2007 (e.g., CG60 at 120,000 plants ha-1 at 2 wk after silking [Fig. 3.3]) and 11 out of 33 combinations in 2008 (e.g., CG60 at 160,000 plants ha-1 at 2 wk after silking [Fig. 3.4]). There were significant genotype × plant density interactions in the allometric relationship for estimating PDM in more than 50% sampling stage × year combinations (Appendix B.1). Allometric relationships with intercepts were established for each genotype × plant density combination and further compared to the models with intercepts using combined plant density. Combined plant density models showed better performance, with higher R2 in 11 out of 15 genotype × sampling stage combinations in 2007 and four out of 12 combinations in 2008 compared to average R2 of individual plant density models. The R2 of the combined models was similar to the average R2 of the individual models for the rest of the genotype × sampling stage × year combinations. The RMSE of the combined plant density models were lower than the average RMSE of individual plant density models in nine out of 15 genotype × sampling stage combinations in 2007 and two out of 12 combinations in 2008. Because the R2 was chosen as the primary criteria of accuracy, the combined plant density model was selected for model justification. 3.3.2.2 Model comparison for ear dry matter estimation The power function outperformed the exponential function with higher R2 and lower RMSE in three out of 27 genotype × plant density × reproductive stage × year combinations (e.g., F1 at 160,000 plants ha-1 at silking in 2007 [Fig. 3.5]), had better performance in R2 and similar performance in RMSE in three out of 27 combinations (e.g., CG102 at 80,000 plants ha-1 109 With intercept Measured PDM or predicted PDM in non-destructive measurement area (g plant-1) 25 Without intercept -1 -1 CG102 at 160,000 plants ha at 10-LT in 2008 PDM = 4.6548 + 0.1300 × SV 2 n = 59 R = 0.84 RMSE = 1.16 CG102 at 160,000 plants ha at 10-LT in 2008 PDM = 0.1983 × SV 2 n = 60 Efron's pseudo-R = 0.61 RMSE = 1.87 20 15 10 Destructive area Non-destructive area 1:1 line 5 0 0 150 5 10 15 20 25 0 -1 5 10 15 20 25 -1 CG60 at 160,000 plants ha at 2 wk after silking in 2008 2 PDM = 3.9715 + 0.1577 × SV + 1.2862 × ED 2 n = 36 R = 0.91 RMSE = 6.13 CG60 at 160,000 plants ha at 2 wk after silking in 2008 2 PDM = 0.1706 × SV + 1.2891 × ED 2 n = 36 Efron's pseudo-R = 0.91 RMSE = 6.17 100 50 0 0 50 100 150 0 50 100 150 -1 Predicted PDM in destructive sampling or non-destructive measurement area (g plant ) Figure 3.4. Selective comparison of allometric models with an intercept and without an intercept for inbred CG102 at 160,000 plants ha-1 at the 10-leaftip (LT) stage and inbred CG60 at 160,000 plants ha-1 at 2 wk after silking in 2008. The allometric model estimates the relationship between above-ground plant dry matter (PDM) and stem volume (SV) at vegetative stages or between PDM and SV and maximum primary ear diameter (ED) at the reproductive stages. The round symbols (○) represent the relationship between measured PDM in destructive sampling areas and corresponding predicted PDM. The triangle symbols (Δ) present the values of predicted PDM in non-destructive measurement areas in the 1:1 line. The vegetative stages are presented as the average LT stage across sampled plants. Number of sampled plants (n), coefficient of determination (R2), Efron's pseudo-R2 and root mean squared error (RMSE) in g 110 plant-1 are presented. Efron's pseudo-R2 = 1 – (sum of squares for residuals/corrected total sum of squares). 111 Power function 10 Exponential function -1 -1 F1 at 160,000 plants ha at silking in 2007 3.8738 1.9851 × ED EDM = 0.1745 × ED 2 n = 45 R = 0.94 RMSE = 0.21 -1 Measured EDM or predicted EDM in non-destructive measurement area (g plant ) F1 at 160,000 plants ha at silking in 2007 EDM = 0.0454 × e 2 n = 48 R = 0.86 RMSE = 0.30 8 6 4 Destructive area Non-destructive area 1:1 line 2 0 0 50 2 4 6 8 10 0 -1 2 4 6 8 10 -1 CG60 at 120,000 plants ha at 2 wk after silking in 2007 3.8423 EDM = 0.1042 × ED 2 n = 36 R = 0.89 RMSE = 0.18 CG60 at 120,000 plants ha at 2 wk after silking in 2007 1.1281 × ED EDM = 0.2343 × e 2 n = 36 R = 0.85 RMSE = 0.20 40 30 20 10 0 0 10 20 30 40 50 0 10 20 30 40 50 -1 Predicted EDM in destructive sampling or non-destructive measurement area (g plant ) Figure 3.5. Selected comparisons of allometric models with a power function and with an exponential function for the F1 hybrid CG60 × CG102 at 160,000 plants ha-1 at silking and inbred CG60 at 120,000 plants ha-1 at 2 wk after silking in 2007. The allometric model estimates the relationship between ear dry matter (EDM) and maximum primary ear diameter (ED) at reproductive stages. The round symbols (○) represent the relationship between measured EDM in destructive sampling areas and corresponding predicted EDM. The triangle symbols (Δ) present the values of predicted EDM in non-destructive measurement areas in the 1:1 line. Number of sampled plants (n) and root mean squared error (RMSE) in g plant-1 are presented. 112 at 2 wk after silking in 2008 [Fig. 3.6]), had similar R2 and lower RMSE in four of 27 combinations (e.g., CG60 at 120,000 plants ha-1 at 2 wk after silking in 2007 [Fig. 3.5]) as well as similar performance in both parameters as the exponential function in 10 out of 27 combinations (e.g., the F1 at 120,000 plants ha-1 at 2 wk after silking in 2008 [Fig. 3.6]). Therefore, the power function with individual plant density was chosen and further compared to the power function with combined plant density. Significant genotype × plant density interaction for EDM estimation was observed in 50% sampling stage × year combinations (data not shown). Therefore, allometric relationships in EDM were established for each genotype × plant density combination and compared to the combined plant density models. The combined plant density models outperformed the individual plant density models, with higher R2 in three out of six genotype × reproductive stage combinations in 2007 and three out of six genotype × reproductive stage combinations in 2008 compared to the average R2 of the individual plant density models. Otherwise, the R2 of the combined plant density model were similar to the average R2 of the individual plant density models. The RMSE of the combined plant density model was higher than average RMSE of individual plant density models in zero out of six combinations in 2007 and three out of six combinations in 2008, and similar RMSE as individual plant density model in one out of six combinations in 2008. Using individual plant density models for EDM estimation showed low R2 (R2 < 0.53) in one of six genotype × plant density × reproductive stage combinations in both 2007 and 2008. Therefore, the combined plant density model was selected for further justification. 113 Power function 40 Exponential function -1 -1 CG102 at 80,000 plants ha at 2 wk after silking in 2008 0.8683 × ED EDM = 0.9127 × e 3.0153 EDM = 0.4479 × ED 2 n = 29 R = 0.94 RMSE = 0.16 -1 Measured EDM or predicted EDM in non-destructive measurement area (g plant ) CG102 at 80,000 plants ha at 2 wk after silking in 2008 2 n = 28 R = 0.86 RMSE = 0.15 30 20 10 Destructive area Non-destructive area 1:1 line 0 0 60 10 20 30 40 0 F1 at 120,000 plants ha-1 at 2 wk after silking in 2008 10 20 30 40 -1 F1 at 120,000 plants ha at 2 wk after silking in 2008 3.3146 0.8522 × ED EDM = 0.2614 × ED n = 40 R2 = 0.84 RMSE = 0.16 EDM = 0.8382 × e 2 n = 40 R = 0.84 RMSE = 0.16 50 40 30 20 10 10 20 30 40 50 60 10 20 30 40 50 60 -1 Predicted EDM in destructive sampling or non-destructive measurement area (g plant ) Figure 3.6. Selected comparisons of allometric models with a power function and with an exponential function for inbred CG102 at 80,000 plants ha-1 at 2 wk after silking and F1 hybrid CG60 × CG102 at 120,000 plants ha-1 at 2 wk after silking in 2008. The allometric model estimates the relationship between ear dry matter (EDM) and maximum primary ear diameter (ED) at reproductive stages. The round symbols (○) represent the relationship between measured EDM in destructive sampling areas and corresponding predicted EDM. The triangle symbols (Δ) present the values of predicted EDM in non-destructive measurement areas in the 1:1 line. Number of sampled plants (n) and root mean squared error (RMSE) in g plant-1 are presented. 114 3.3.2.3 Allometric model justification A two-step justification procedure was developed to detect significant bias between/among individual plant densities within combined plant density models. Instead of using residual value, RP as a ratio was used to compare bias between/among plant densities in both magnitude and direction (i.e., overestimation or underestimation). According to the equation [3.6], negative RP indicated overestimation. Differences in the RP between/among individual plant densities within the combined plant density models were significant in six genotype × sampling stage × year combinations in 2007 and 2008 (Tables 3.4 and 3.5). However, after comparing RP of a plant density derived from combined plant density model and that of the same plant density derived from its individual plant density model, the RP between the combined plant density model and the individual plant density model was significantly different only for CG102 at the first sampling stage and for the F1 at 2 wk after silking in 2008 (data not shown). Therefore, combined plant density models did not cause significant bias in most cases and were chosen to estimate PDM (Fig. 3.7). In terms of EDM estimation, the RPs were statistically similar between/among individual plant densities within the combined plant density models in six out of 12 genotype × reproductive stage × year combinations (Table 3.6). Although the RP was not significantly different between 40,000 and 120,000 plants ha-1 by using the combined plant density model for CG102 at silking in 2007 (Table 3.6), numerically the EDM overestimation was very large at 21%. At 40,000 plants ha-1 the RPs of the combined plant density model and the individual plant density model were significantly different (21% vs. 0.4%). When the RPs between/among 115 Table 3.4. Comparison of mean residual percentage (i.e., the difference between measured above-ground plant dry matter minus estimated above-ground plant dry matter divided by measured above-ground plant dry matter) between two plant densities within the combined plant density model for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at five destructive sampling stages in 2007. The vegetative stages are presented by the average leaftip (LT) stage across sampled plants. Genotype CG60 CG102 CG60 × CG102 Plant density (plants ha-1) 40,000 120,000 40,000 120,000 40,000 160,000 Residual percentage –––––––––––––––––––––––– % –––––––––––––––––––––––– -3.88a -3.12a -6.27a -1.66a 8-LT -10.58a† -2.28a 12-LT 10.29a -7.55b -4.81a -1.26a -2.60a -2.69a 16-LT 1.97a -5.79a 0.43a -4.53a 2.74a -8.66a Silking 1.69a -2.39a -5.77a -0.30a 0.36a -3.30a 2 wk after silking 1.54a -1.66a 0.61a -1.41a 1.82a -0.71a † Means followed by the same letter between two plant densities within a genotype × sampling stage combination are not significantly different using the LSMEANS/PDIFF (P > 0.05) procedure of SAS. 116 Table 3.5. Comparison of mean residual percentage (i.e., the difference between measured above-ground plant dry matter minus estimated above-ground plant dry matter divided by measured above-ground plant dry matter) among three plant densities within the combined plant density model for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at four destructive sampling stages in 2008. The vegetative stages are presented by the average leaftip (LT) stage across sampled plants. Genotype CG60 CG102 CG60 × CG102 Plant density (plants ha-1) 80,000 120,000 160,000 80,000 120,000 160,000 80,000 120,000 160,000 Residual percentage –––––––––––––––––––––––––––––––––––––––– % –––––––––––––––––––––––––––––––––––––––– 12-LT 2.81a† 0.72a -6.79b -9.55b -14.67b 7.98a 2.38a -2.65ab -2.98b 15-LT -0.75a -3.09a -2.04a -10.04a 0.67a -6.79a 1.43a -5.44a -3.75a ‡ Silking -1.22a NA -2.61a -8.48b -0.20a 0.27a -0.05a NA -1.32a 2 wk after silking -0.37a -3.07a 0.93a -1.49a NA -0.73a 0.32b -5.18c 2.32a † Means followed by the same letter between/among two or three plant densities within a genotype × sampling stage are not significantly different using the LSMEANS/PDIFF (P > 0.05) procedure of SAS. ‡ NA, not available. 117 Measured PDM or predicted PDM in non-destructive measurement area (g plant-1) 30 150 CG102 at 11-LT in 2007 PDM = 1.8051 + 0.1373 × SV 2 n = 47 R = 0.81 RMSE = 1.37 25 CG60 at silking in 2007 2 PDM = 7.7169 + 0.0823 × SV + 5.2570 × ED 2 n = 48 R = 0.91 RMSE = 6.96 120 20 90 15 60 10 -1 40,000 plants ha at destructive area -1 120,000 plants m at destructive area Non-destructive area 1:1 line 5 30 0 0 0 80 5 10 15 20 25 30 0 300 CG60 at 16-LT in 2008 PDM = 5.8417 + 0.0987 × SVmax 30 60 90 120 150 F1 at 2 wk after silking in 2008 2 PDM = -18.0256 + 0.1104 × SVmax + 3.6589 × ED 2 n = 123 R = 0.90 RMSE = 3.64 2 n = 123 R = 0.94 RMSE = 10.69 250 60 200 150 40 100 20 -1 80,000 plants ha at destructive area -1 120,000 plants ha at destructive area -1 160,000 plants ha at destructive area Non-destructive area 1:1 line 0 0 20 40 60 80 50 0 0 50 100 150 200 250 300 Predicted PDM in destructive sampling or non-destructive measurement area (g plant-1) Figure 3.7. Selected presentation of the relationship between measured above-ground plant dry matter (PDM) in destructive sampling areas using combined plant density models and the corresponding predicted PDM for inbred CG102 at 11-leaftip (LT) stage and inbred CG60 at silking in 2007 and CG60 at 16-LT stage and the F1 hybrid CG60 × CG102 at 2 wk after silking in 2008. The round (○), diamond (◊), triangle (Δ) and square (□) symbols represent the relationship between measured PDM in destructive sampling areas and corresponding predicted PDM at different plant densities. The values of predicted PDM in non-destructive measurement areas are presented by the cross (×) symbols in the 1:1 ratio line. Stem volume calculated from maximum width of basal stem diameter and maximum width of stem diameter that is 2 cm above the ground level are presented by SV and SVmax, respectively. Number of sampled plants (n) and root mean squared error (RMSE) in g plant-1 are presented. 118 Table 3.6. Comparison of mean residual percentage (i.e., the difference between measured ear dry matter [EDM] minus estimated EDM divided by measured EDM) within the combined plant density model between two plant densities in 2007 and among three plant densities in 2008 for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at silking and 2 wk after silking. Year Genotype CG60 CG102 CG60 × CG102 2007 Plant density 40,000 120,000 40,000 120,000 40,000 160,000 -1 (plants ha ) Residual percentage Silking 2 wk after silking –––––––––––––––––––––––––––––––––– % ––––––––––––––––––––––––––––––––– 11b† 2a -21a -3a 0a -3a 2a -3a 10a -6b 4a -3a 2008 Plant density 80,000 120,000 160,000 80,000 120,000 160,000 80,000 120,000 160,000 -1 (plants ha ) Residual percentage ––––––––––––––––––––––––––––––––– % ––––––––––––––––––––––––––––––––– Silking -21a NA‡ 2b -17a -7ab 5b -4a NA -1a 2 wk after silking 20a -7b -43c -1a NA -6a 2a -10b 4a † Means followed by the same letter between/among two or three plant densities within a genotype × sampling stage × year are not significantly different using the LSMEANS/PDIFF (P > 0.05) procedure of SAS. ‡ NA, not available. 119 individual plant densities within the combined plant density models were significantly different, the RPs for an individual plant density between the combined plant density model and its individual plant density model were significantly different in three out of six genotype × reproductive stage × year combinations (Table 3.7). For example, the differences in RPs between the combined plant density model and the individual 80,000 plants ha-1 model, and between the combined plant density model and the individual 160,000 plants ha-1 model were 28% and 39%, respectively, for CG60 at 2 wk after silking in 2008. Furthermore, for the other three out of six genotype × reproductive stage × year combinations with similar RP for an individual plant density between a combined plant density model and its individual plant density model (Table 3.7), even though the RP at 80,000 plants ha-1 between the combined plant density model and the individual 80,000 plants ha-1 model was not significantly different for CG102 at silking in 2008, more than 20% of difference in RP for EDM estimation at silking could not be ignored. Therefore, whether statistically significant or not, the combined plant density models could cause large deviations from measured EDM in some genotype × reproductive stage × year combinations. Both combined plant density models (Fig. 3.8) and individual plant density models, as well as the combination of combined plant density model and individual plant density model were used to estimate EDM. The criteria to use individual plant density models were (i) When RPs of individual plant densities were not significantly different within the combined plant density model, but the difference in RP between/among plant densities was larger than 10%, and the RP of an individual plant density with relatively large overestimation or underestimation by using the combined plant density model was both significantly different and larger in absolute value than its individual plant density model. The case in this study was CG102 at silking in 2007. Comparing to the combined plant density model, the individual 120 Table 3.7. Comparison of mean residual percentage (i.e., the difference between measured ear dry matter [EDM] minus estimated EDM divided by measured EDM) of a plant density between combined plant density model and individual plant density model for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at two genotype × sampling stage combinations in 2007 and four genotype × sampling stage combinations in 2008 when there was a significant difference in residual percentage between/among plant densities within a combined plant density model. Year Genotype Plant density (plants ha-1) 40,000 120,000 2007 Model Combined –––––––––––––––––––––––––––– % –––––––––––––––––––––––––––– -11.34b† -0.36a 1.80a -0.88b 9.99a -0.71a -6.13a -1.84a CG60 CG102 Residual percentage Silking 2 wk after silking 2008 Genotype Plant density (plants ha-1) Model Individual 80,000 Combined Individual 120,000 Combined Individual 160,000 Combined Individual Combined Individual Residual percentage ––––––––––––––––––––––––––––% –––––––––––––––––––––––––––– CG60 Silking -20.62a -13.40a NA‡ NA 1.91a -1.35a 2 wk after silking 19.62a -8.55b -7.00a -4.23a -42.88b -3.80a CG102 Silking -16.81a 4.46a -7.26a -4.22a 5.49a -5.97a CG60 × CG102 2 wk after silking 1.81a -0.46a -9.59b -1.20a 3.65a -0.71b † Means followed by the same letter between/among two or three plant densities within a genotype × sampling stage are not significantly different using the LSMEANS/PDIFF (P > 0.05) procedure of SAS. ‡ NA, not available. 121 Measured EDM or predicted EDM in non-destructive measurement area (g plant-1) 30 50 F1 at silking in 2007 CG60 at 2 wk after silking in 2007 3.7680 EDM = 0.1162 × ED 2 n = 48 R = 0.89 RMSE = 0.17 3.4047 EDM = 0.2344 × ED 2 n = 58 R = 0.93 RMSE = 0.29 25 40 20 30 15 20 10 -1 40,000 plants ha at destructive area -1 120,000 plants m at destructive area Non-destructive area 1:1 line 5 10 0 0 0 30 5 10 15 20 25 30 40 CG60 at silking in 2008 2.4611 EDM = 0.4204 × ED 2 n = 80 R = 0.78 RMSE = 0.32 25 0 10 20 30 40 50 CG102 at 2 wk after silking in 2008 3.4125 EDM = 0.2743 × ED 2 n = 63 R = 0.93 RMSE = 0.26 30 20 20 15 10 -1 80,000 plants ha at destructive area -1 160,000 plants ha at destructive area Non-destructive area 1:1 line 5 10 0 0 0 5 10 15 20 25 30 0 10 20 30 40 Predicted EDM in destructive sampling or non-destructive measurement area (g plant-1) Figure 3.8. Presentation of relationship between measured ear dry matter (EDM) in destructive sampling areas using combined plant density model and the corresponding predicted EDM for F1 hybrid CG60 × CG102 at silking, and inbred CG60 at 2 wk after silking in 2007, and CG60 at silking, and CG102 at 2 wk after silking in 2008. The round (○), and diamond (◊), triangle (Δ) and square (□) symbols represent the relationship between measured EDM in destructive sampling areas and corresponding predicted EDM at different plant densities. The values of predicted EDM in non-destructive measurement area are presented by the cross (×) symbols in the 1:1 ratio line. Number of sampled plants (n) and root mean squared error (RMSE) in g plant1 are presented. 122 plant density model improved the absolute RP from 21% to 0.4% (data not shown). (ii) When RPs between individual plant densities within the combined plant density model were significantly different and the RPs for an individual plant density between the combined plant density model and its individual plant density model was significantly different. The cases in this study were CG60 at silking in 2007, CG60 at 2 wk after silking in 2008 and the F1 at 2 wk after silking in 2008. (iii) When RPs between individual plant densities within the combined plant density model were significantly different and RPs for an individual plant density between the combined plant density model and its individual plant density model were statistically similar, but the difference in RP between the combined plant density model and its individual plant density model were larger than 10%. The cases in this study were CG102 at 2 wk after silking in 2007 and CG102 at silking in 2008. For CG60 at silking in 2008, although the RPs between the combined plant density model and an individual plant density model were not significantly different (Table 3.7), the 21% overestimation of EDM by the combined plant density model at 80,000 plants ha-1 was deemed unacceptable. Therefore, the EDM at 80,000 plants ha-1 was estimated by using the individual plant density model with absolute RP of 13%, but using the combined plant density model to estimate EDM at 120,000 and 160,000 plants ha-1. 3.3.2.4 Allometric model calibration After allometric model development, the PDM and EDM values in the non-destructive measurement areas were calculated to check extrapolation. When the measured values in the 123 destructive sampling areas could not cover ranges of predicted values in the non-destructive measurement areas, extrapolation occurred, such as the F1 at 160,000 plants ha-1 at silking in 2007 (Fig. 3.5). The extrapolation was addressed for most of the genotype × vegetative sampling stage combinations in 2007 and achieved higher R2 and lower RMSE by adding border plants to the models except for CG102 and the F1 hybrid at the third vegetative sampling stage. No additional data was available to be added to address extrapolation for the rest of the dataset. For the rest of the dataset, extrapolation was observed at 16 genotype × plant density × sampling stage × year combinations for PDM and 14 combinations for EDM estimation (Appendix B.2). Extrapolation was observed mainly (12 out of 15 combinations) in CG60 and the F1 and at 40,000 plants ha-1 (nine out of 14 combinations) in 2007. Covering the lower end of ED could help estimate PDM and EDM of the potential barren plants. In terms of ED range at the reproductive stages, only the F1 hybrid in the destructive sampling areas at silking did not have an ear with zero ED when there were plants with zero ED in the non-destructive measurement areas in 2007 and 2008. 3.3.2.5 Allometric model evaluation Overall, the allometric models with intercepts and combined plant density for PDM estimation were significant (P ≤ 0.0001) with R2 ranging from 0.60 to 0.97 (Table 3.2). The allometric models with power function with the combination of combined and individual plant density for EDM estimation were significant (P ≤ 0.0001) with R2 varying between 0.52 and 0.97 (Table 3.3). With the same structure of developed allometric models, differences in magnitude of bias for PDM were found among genotypes, plant densities and sampling stages. When 124 comparing genotypes at the same plant density × sampling stage × year combination, the three genotypes exhibited similar magnitude of bias in PDM estimation in 2007. However, CG60 and the F1 had less magnitude of bias compared to CG102 for PDM estimation in 2008 except at the stage of 2 wk after silking (Table 3.5). No other obvious trends could be found between/among plant densities in PDM estimation. The bias was less in PDM estimation at 2 wk after silking for CG60 at 160,000 plants ha-1 and CG102 at 80,000 and 160,000 plants ha-1 in 2008 compared to the earlier sampling stages for the same genotype × plant density combination (Table 3.5). The F1 hybrid in most cases exhibited less that 5% of absolute RP in PDM estimation across different years, plant densities and sampling stages. For EDM estimation, due to the use of combined plant density models and individual plant density models as well as the combination of both models at different genotype × reproductive stage combinations, difference in the magnitude of bias among genotype, plant density and reproductive stage could not be compared. 3.3.3 The history of individual barren plants Individual plants that had similar initial plant growth and development and uniform spatial pattern could have different destinies in terms of growth (e.g., PDM, PDM ratio and EDM), development (e.g., LT stage, ASI and GDDsilking) and dry matter partitioning and could ultimately become barren or non-barren plants. 3.3.3.1 Plant growth and development of barren plants Average barren plants had below-average PDMPM (Figs. 3.9 and 3.10), and similar final leaf number as average plants at each inbred × plant density × year combination (Fig. 3.11). 125 150 -1 -1 CG102 at 80,000 plants ha in 2008 CG102 at 120,000 plants ha in 2007 Individual barren plants Average barren plants Average plants Estimated PDM (g plant-1) 100 50 0 150 -1 -1 CG102 at 120,000 plants ha in 2008 CG102 at 160,000 plants ha in 2008 Barren plants Average barren plants Average non-barren plants 100 Average plants 50 0 0 200 400 600 800 1000 0 200 400 600 800 1000 1200 Growing degree days after planting Figure 3.9. Estimated above-ground plant dry matter (PDM) for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, and average individual plants from early vegetative stage to physiological maturity for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. Each sub-figure represents a plant density × year combination that had at least one barren plant. The estimated PDM for average non-barren CG102 plants at 120,000 and 160,000 plants ha-1 in 2008 are presented. The first and second arrows indicate the timing of ear initiation and silking, respectively. 126 200 -1 CG60 at 120,000 plants ha in 2008 Barren plants Average barren plants Average plants 150 100 Estimated PDM (g plant-1) 50 0 -1 CG60 at 160,000 plants ha in 2008 Barren plants Average barren plants Average non-barren plants Average plants 150 100 50 0 -1 F1 at 160,000 plants ha in 2008 150 100 50 0 0 200 400 600 800 1000 1200 Growing degree days after planting Figure 3.10. Estimated above-ground plant dry matter (PDM) for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, and average individual plants from early vegetative stage to physiological maturity for one of the parental inbred lines CG60 and its F1 hybrid CG60 × CG102 at different plant densities in 2008. Each sub-figure represents a genotype × plant density combination that had at least one barren plant. The estimated PDM for average non-barren CG60 plants at 160,000 plants ha-1 is presented. The first and second arrows indicate the timing of ear initiation and silking, respectively. 127 16 -1 -1 CG102 at 120,000 plants ha in 2007 CG102 at 80,000 plants ha in 2008 -1 CG102 at 120,000 plants ha in 2008 -1 CG102 at 160,000 plants ha in 2008 14 12 10 Barren plants Average plants Leaftip stage 8 6 200 20 400 600 800 200 -1 CG60 at 120,000 plants ha in 2008 400 600 800 200 400 600 800 200 400 600 800 1000 -1 -1 F1 at 160,000 plants ha in 2008 CG60 at 160,000 plants ha in 2008 18 16 14 12 10 8 200 400 600 800 200 400 600 800 200 400 600 800 1000 Growing degree days after planting Figure 3.11. The leaftip stage development of individual barren plants (i.e., grain yield per plant = 0 g) and average individual plants for two parental inbred lines CG60 and CG102 and their F1 hybrid CG60 × CG102 at different plant densities in 2007 and 2008. Each sub-figure represents a genotype × plant density × year combination that had at least one barren plant. The first and second arrows indicate the timing of ear initiation and silking, respectively. 128 The differences in PDM between average barren plants and average plants tended to increase through development (Figs. 3.9 and 3.10). When there were more than 10 barren plants for CG102 at 120,000 and 160,000 plants ha-1 and CG60 at 160,000 plants ha-1 in 2008, the average barren plants were compared to the average non-barren plants. The barren plants had significantly lower PDMs, PDMs+2 and PDMPM only for CG102 at 120,000 and 160,000 plants ha-1 in 2008 (Fig. 3.9). When barren plants were present at a plant density in 2008, there was less PDM at PM than at 2 wk after silking and at silking for average barren CG102 and CG60 plants, respectively (Figs. 3.9 and 3.10). When comparing individual barren plants with the average value, barren plants did not necessarily have below-average PDMPM, especially for CG102 at 120,000 and 160,000 plants ha1 in 2008 (Fig. 3.9) and CG60 at 160,000 plants ha-1 in 2008 (Fig. 3.10). Individual barren plants had above-average, average, or below-average final leaf number (Fig. 3.11). An individual inbred plant with above-average, average or below-average PDM and LT stage in a sampling stage before PM could become a barren plant (Figs. 3.9-3.11). The exception is that all the individual barren plants had a below-average PDMs+2 for CG102 at 120,000 plants ha-1 in 2007 (Fig. 3.9). For the F1 hybrid in 2008, the ultimately barren plant had a slightly above-average PDM and LT stage at the first sampling stage (i.e., 11-LT) and then exhibited below-average PDM and the same LT stage as the average until PM (Figs. 3.10 and 3.11). Although at the canopy level, the parental inbred plants and the F1 plants maintained linear growth throughout phenological development before PM in 2007 and 2008, the individual ultimately barren plants did not always maintain linear growth (Figs. 3.9 and 3.10). Linear growth of individual plants with similar initial growth and development indicates rank stability within a genotype × plant 129 density × year combination. For barren inbred plants, their previous rank in PDM within an inbred × plant density × year combination, either above or below average or close to the average, could not determine the position of the same individual in the next sampling stage (Figs. 3.9 and 3.10). The LT stage development of the barren plants could be grouped into several patterns, especially when there were more than 10 barren plants (Fig. 3.11). Compared to the average LT stage within an inbred × plant density × year combination, a barren inbred plant that was either in advance of LT stage development, or was the same as the average or slower in LT stage development could later be in any rank in LT stage (Fig. 3.11). When tracking the history of barren and non-barren plants within an inbred × plant density × year combination, plants with almost the same PDM and in the same LT stage at a sampling stage could eventually become either barren or non-barren (data not shown). When comparing within the ultimately barren plants within an inbred × plant density × year combination, the inbreds with similar initial growth and development could maintain similar PDM and LT stage, or have similar PDM but different LT stage; mostly as many as one LT in each vegetative sampling stage with the exception of CG60 at 120,000 plants ha-1 in 2008 (data not shown). Interestingly, two barren plants had similar PDM but different final leaf number at silking; as many as two LTs for CG102 at 160,000 plants ha-1 in 2008. Another physiological parameter to characterize the history of barren plants is PDM ratio between an individual barren plant and the average of a plant stand throughout development. The PDM ratio could indicate the dynamics of differential growth of an individual barren plant 130 relative to the average plants (Appendixes B.3 and B.4). The average barren plants tended to be smaller than the average plants, with the difference increasing as development progressed until PM in each inbred × plant density × year combination, except for CG102 at 160,000 plants ha-1 in 2008. For CG102 at 160,000 plants ha-1 in 2008, the average barren plants had a PDM ratio close to 1.0 throughout development. At the individual plant level, barren plants all had belowaverage PDMPM ratio for CG102 at 120,000 plants ha-1 in 2007, 80,000 plants ha-1 in 2008 and CG60 at 120,000 plants ha-1 and the F1 at 160,000 plants ha-1 in 2008, while in the other three inbred × plant density × year combinations, barren plants had both above- and below-average PDMPM ratio. 3.3.3.2 Ear growth and development of barren plants Average barren plants had below-average EDMPM for each inbred × plant density × year combination (Figs. 3.12 and 3.13). The average barren plants had significantly lower EDMs, EDM at 2 wk after silking (EDMs+2) and EDMPM than average non-barren plants for CG102 at 120,000 and 160,000 plants ha-1 in 2008 and CG60 at 160,000 plants ha-1 in 2008. At the individual plant level, genotype and plant density affected the value of EDMs, EDMs+2 and EDMPM of individual barren plants relative to the average value of a genotype × plant density × year combination. All barren inbred plants had below-average EDMPM for each inbred × plant density × year combination with the exception of CG102 at 160,000 plants ha-1 in 2008 (Figs. 3.12 and 3.13). Barren CG102 plants accumulated below-average EDMs and EDMs+2 at 80,000 plants ha-1 in 2008 and 120,000 plants ha-1 in 2007 and 2008, while at 160,000 131 GY (g plant-1) EDM (g plant-1) 80 GY (g plant-1) EDM (g plant-1) 80 -1 CG102 at 80,000 plants ha in 2008 -1 CG102 at 160,000 plants ha in 2008 -1 CG102 at 120,000 plants ha in 2007 60 40 Initial EDM Growth I Growth II 20 0 20 40 60 GY 80 60 -1 CG102 at 120,000 plants ha in 2008 40 20 0 10 20 30 40 50 Figure 3.12. The initial ear dry matter (EDM) around silking, and the subsequent growth I of individual ears between silking and approximately 2 wk after silking, the subsequent growth II between 2 wk after silking and physiological maturity as well as the corresponding final grain yield (GY) at physiological maturity for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. Each sub-figure represents a plant density × year combination that had at least one barren plant (i.e., GY per plant = 0 g). In the upper half of each panel, the black vertical bars indicate the initial EDM, the grey and dark grey bars indicate the subsequent growth I and II, respectively. In the lower half of each panel, the vertical bars indicate the final GY of the corresponding individual ears. The dash line separates barren and non-barren plants. The initial EDM of the barren and non-barren plants are sorted by an ascending order, separately. 132 -1 CG60 at 120,000 plants ha in 2008 80 60 Initial EDM Growth I Growth II 40 20 0 GY (g plant-1) EDM (g plant-1) 100 -20 20 40 60 GY 80 100 -1 EDM (g plant-1) CG60 at 160,000 plants ha in 2008 80 60 40 20 -1 GY (g plant-1) EDM (g plant ) GY (g plant-1) 0 20 40 60 120 100 80 60 40 20 0 -1 F1 at 160,000 plants ha in 2008 20 40 60 80 100 Figure 3.13. The initial ear dry matter (EDM) around silking, and the subsequent growth I of individual ears between silking and approximately 2 wk after silking, the subsequent growth II between 2 wk after silking and physiological maturity as well as the corresponding final grain yield (GY) at physiological maturity for one of the parental inbred lines, CG60, and its F1 hybrid CG60 × CG102 at different plant densities in 2008. Each sub-figure represents a genotype × 133 plant density combination that had at least one barren plant (i.e., GY per plant = 0 g). In the upper half of each panel, the black vertical bars indicate the initial EDM and the grey and dark grey bars indicate the subsequent growth I and II, respectively. In the lower half of each panel, the vertical bars indicate the final GY of the corresponding individual ears. The dash line separates barren and non-barren plants. The initial EDM of the barren and non-barren plants are sorted by an ascending order, separately. 134 plants ha-1 in 2008, the ultimately barren plants had both above- and below-average EDMs, EDMs+2 and EDMPM. Similarly the ultimately barren CG60 plants had above- and belowaverage EDMs and below-average EDMs+2 at 120,000 plants ha-1 in 2008, while at 160,000 plants ha-1 in 2008, CG60 barren plants accumulated both above- and below-average EDMs and EDMs+2. However, the ultimately barren F1 plant had below-average EDMs, EDMs+2 and EDMPM. For ultimately barren ears, the rank in EDMs within a plant density did not determine the rank in the EDMs+2 and EDMPM (Figs. 3.12 and 3.13). Barrenness seemed related with EDMPM for the three genotypes. For CG102 in 2007, the three barren ears at 120,000 plants ha-1 belonged to the lowest four EDMPM in rank. Similarly, for CG102 in 2008, the six barren ears at 80,000 plants ha-1 originated from the six lowest EDMPM. All the 23 barren ears at 120,000 plants ha-1 belonged to the lowest 25 EDMPM in rank. However, this trend could not be observed for CG102 at the 160,000 plants ha-1 in 2008. Similarly, for CG60 in 2008, all the four barren ears at 120,000 plants ha-1 had the lowest four EDMPM. Thirteen out of 14 barren ears at 160,000 plants ha-1 were present in the lowest 13 EDMPM in rank. The F1 hybrid barren ear had the lowest EDMPM at 160,000 plants ha-1 in 2008. In addition, barrenness for CG102 was associated with EDMs in 2008. Five out of six barren ears at 80,000 plants ha-1 had the lowest five EDMs. Twenty-three out of 23 barren ears at 120,000 plants ha-1 belonged to the lowest 26 EDMs in rank. The other three out of 26 lowest EDMs had a close to barren GY at PM (GY ≈ 1 g plant-1). Fifty-three out of 58 barren ears at 160,000 plants ha-1 were present in the lowest 56 EDMs in rank. The other three out of 56 lowest EDMs had a close to barren GY at PM (GY ≈ 1 g plant-1). However, this trend could not be observed for CG102 at 120,000 plants ha-1 in 2007. The F1 barren ear had no initial EDMs. This 135 general trend could not be observed in CG60. Flowering dynamics of individual plants in this study includes both ASI and GDDsilking. In terms of the relationship between GDDsilking and ASI, the GDDsilking increased as the ASI increased for the three genotypes (Appendix B.5). The relationship between barrenness and flowering dynamics varied by year and genotype. In 2007, the ultimately barren CG102 plants at 120,000 plants ha-1 had ASI with a range of 7 to 11. While in 2008, the ultimately barren CG102 plants across three plant densities could be grouped into three categories: ASI with a range of 4 to 11, no silk emergence as well as no anther and silk emergence (NT & NS) (Appendix B.5). Moreover, barrenness was mainly related with no silk emergence for CG102 in 2008. Five out of six (83%), 21 out of 23 (91%), and 56 out of 58 (97%) ultimately barren plants had no silk emergence for CG102 at 80,000; 120,000 and 160,000 plants ha-1 in 2008, respectively. However, only two out of four (50%), and three out of 14 (21%) barren plants had no silk emergence for CG60 at 120,000 and 160,000 plants ha-1 in 2008. The ultimately barren F1 plant had a relatively long ASI of 3 compared to the rest of the plants at 160,000 plants ha-1 in 2008. When there was silk emergence for the ultimately barren plants, some of the ultimately barren plants took the longest GDDsilking (Appendix B.5). However, the plants with the longest GDDsilking did not necessarily become barren plants. The three genotypes differed in the relationships between EDMs and ASI, and between EDMs and GDDsilking. Only CG102 exhibited a linear relationship between EDMs and ASI in two out of four plant density × year combinations (Fig. 3.14). Similarly, CG102 exhibited a linear relationship between EDMs and GDDsilking at each plant density in 2008 (Fig. 3.14) and the 136 20 -1 -1 CG102 at 120,000 plants ha in 2007 CG102 at 120,000 plants ha in 2007 Barren ears Non-barren ears EDMs vs. GDDsilking Barren ears Non-barren ears EDMs vs. ASI 15 10 5 0 -1 -1 20 CG102 at 80,000 plants ha in 2008 CG102 at 80,000 plants ha in 2008 No silk emergence 15 10 NT 0 20 -1 -1 CG102 at 120,000 plants ha in 2008 CG102 at 120,000 plants ha in 2008 15 No silk emergence EDMs (g ear-1) 5 10 5 NT 0 -1 -1 CG102 at 160,000 plants ha in 2008 No silk emergence CG102 at 160,000 plants ha in 2008 15 10 5 NT & NS 20 NT 0 0 5 10 15 20 640 ASI (d) 680 720 760 800 840 GDDsilking Figure 3.14. Relationship between ear dry matter at silking (EDMs) and anthesis to silking interval (ASI) for ultimately barren and non-barren ears, and the relationship between EDMs and growing degree days from planting to silking (GDDsilking) for barren and non-barren ears for one 137 of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. The EDMs for no silk emergence, no anther and silk emergence (NT & NS) and no anther emergence (NT) were present in the right-hand side of each panel when available, and, respectively. Each subfigure represents a plant density × year combination that had at least one barren plant (i.e., grain yield per plant = 0 g). The linear relationships between EDMs and ASI, between EDMs and GDDsilking were as followings: For CG102 at 80,000 plants ha-1 in 2008: EDMs = 5.11 – 0.49 × ASI (R2 = 0.59, n = 18, P = 0.0002); EDMs = 57.88 – 0.08 × GDDsilking (R2 = 0.80, n = 19, P < 0.0001). For CG102 at 120,000 plants ha-1 in 2008: EDMs = 94.73 – 0.12 × GDDsilking (R2 = 0.81, n = 37, P = < 0.0001). For CG102 at 160,000 plants ha-1 in 2008: EDMs = 14.78 – 1.08 × ASI (R2 = 0.50, n = 11, P = 0.01); EDMs = 143.41 – 0.19 × GDDsilking (R2 = 0.74, n = 12, P = 0.0003). 138 F1 had a linear relationship between EDMs and GDDsilking at 160,000 plants ha-1 in 2008 (Appendix B.6). However, no linear relationship between EDMs and ASI or GDDsilking could be established for CG60 at the two plant densities in 2008. Plants with similar EDMs and the same ASI or similar EDMs and the same GDDsilking could eventually became a barren or a non-barren plant for CG102 at 120,000 plants ha-1 in 2008 and CG60 at 160,000 plants ha-1 in 2008 (Fig. 3.14 and Appendix B.6). 3.3.3.3 Efficiency and dry matter partitioning during the critical period bracketing silking Both PGRs and EGRs are considered as critical physiological traits for GY formation (Tollenaar et al., 1992; Echarte and Tollenaar, 2006). The relationships between HI and PGRs, and between HI and EGRs indicate the relationship between the dry matter partitioning at PM and the efficiency of plant and ear growth during the period bracketing silking. Plant growth rate during the critical period bracketing silking for individual plants was the slope of the linear regression between PDM and the corresponding GDD. The linear regression calculated PGRs for individual plants successfully according to the minimum, maximum and average R2 (Appendix B.7). Threshold values of PGRs for HI were 0.06 g plant-1 GDD-1 and 0.05 g plant-1 GDD-1 for CG102 in 2007 and CG60 in 2008, respectively (Figs. 3.15, 3.16 and Table 3.8). The threshold value of EGRs for HI was 0.01 g plant-1 GDD-1 and 0.03 g plant-1 GDD-1 for CG60 and CG102 in 2007 (Fig. 3.15). The threshold value of PGRs and EGRs for HI was 0.05 and 0.04 g plant-1 GDD-1 for the F1 in 2008, respectively (Fig. 3.16). All the other PGRs and EGRs 139 1.0 CG60 in 2007 CG60 in 2007 CG102 in 2007 CG102 in 2007 F1 in 2007 F1 in 2007 0.8 0.6 0.4 0.2 0.0 Harvest index (g g-1) 1.0 0.8 0.6 0.4 0.2 0.0 1.0 0.8 0.6 0.4 0.2 0.0 0.0 0.1 0.2 0.3 0.4 0.5 0.0 0.1 0.2 0.3 0.4 0.5 0.6 EGRs (g plant-1 GDD-1) PGRs (g plant-1 GDD-1) Figure 3.15. Relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1), and between HI and ear growth rate after silking (EGRs) in g plant-1 GDD-1 for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 across two plant densities in 2007. The period bracketing silking for PGRs was from 2 wk before silking to 2 wk after silking. 140 The period bracketing silking for EGRs was from silking to 2 wk after silking. The plant densities were 40,000 and 120,000 plants ha-1 for the two inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid. 141 1.0 CG60 in 2008 CG60 in 2008 CG102 in 2008 CG102 in 2008 F1 in 2008 F1 in 2008 0.8 0.6 0.4 0.2 0.0 Harvest index (g g-1) 1.0 0.8 0.6 0.4 0.2 0.0 1.0 0.8 0.6 0.4 0.2 0.0 0.0 0.1 0.2 0.3 0.4 PGRs (g plant-1 GDD-1) -0.2 -0.1 0.0 0.1 0.2 0.3 0.4 0.5 EGRs (g plant-1 GDD-1) Figure 3.16. Relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1), and between HI and ear growth rate after silking (EGRs) in g plant-1 GDD-1 for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 across three plant 142 densities in 2008. The period bracketing silking for PGRs was from 2 wk before silking to 2 wk after silking. The period bracketing silking for EGRs was from 1 wk after silking to 3 wk after silking. The plant densities were 80,000; 120,000 and 160,000 plants ha-1. 143 Table 3.8 Threshold values (± standard error) of hyperbolic model fitted to the relationship between harvest index (HI) and plant growth rate during the critical period bracketing silking (PGRs) or HI and ear growth rate during the critical period bracketing silking (EGRs) for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 in 2007 and 2008 grown at various plant densities. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines and 40,000 and 160,000 plants ha-1 for the F1. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. R2 Threshold EGRs for HI R2 n Year Genotype Threshold PGRs for HI (g plant-1 GDD-1) 2007 2008 † (g plant-1 GDD-1) CG60 NA† NA 0.014 ± 0.036 0.95 69 CG102 0.063 ± 0.012 0.85 0.025 ± 0.004 0.87 70 F1 NA NA NA NA NA CG60 0.045 ± 0.014 0.79 NA NA 147 CG102 NA NA NA NA 154 0.051 ± 0.001 0.99 0.035 ± 0.000 0.99 146 F1 NA, not available. 144 threshold values for HI could not be estimated (Table 3.8). The only F1 barren plant had the lowest PGRs and EGRs in 2008 (Fig. 3.16). Within barren inbred plants, the PGRs ranged from 0.04 to 0.11 g plant-1 GDD-1, from 0.08 to 0.28 g plant-1 GDD-1, and from 0.04 to 0.25 g plant-1 GDD-1 for CG102 in 2007 and in 2008 and CG60 in 2008, respectively. The EGRs ranged from 0.02 to 0.05 g plant-1 GDD-1, from 0.00 to 0.07 g plant-1 GDD-1, and from -0.12 to 0.18 g plant-1 GDD-1 for CG102 in 2007 and in 2008 and CG60 in 2008, respectively. When a barren inbred plant had similar PGRs or EGRs (i.e., difference in PGRs and EGRs ≤ 0.01 and 0.005 g plant-1 GDD-1) as a non-barren inbred plant, the non-barren plant had HI in different ranges (Figs. 3.15, 3.16 and Table 3.9). Dry matter partitioning to the ear is equivalent to the ratio between EGRs and PGRs and is termed partitioning index (Pagano and Maddonni, 2007). The ultimately barren inbred plants had above- and below-average partitioning index (Fig. 3.17). The values of partitioning index of barren inbred plants ranged from 0.34 to 0.45, from 0.00 to 0.51, and from -0.87 to 0.97 for CG102 in 2007 and in 2008 and CG60 in 2008, respectively. The ultimately barren F1 hybrid had an above-average partitioning index (0.70 vs. 0.62). Furthermore, there was no relationship between HI and partitioning index for each genotype × year combination irrespective of the existence of a barren plant (Appendix B.8). The ultimately barren plants could have similar partitioning index (difference in partitioning index ≤ 0.01) during the period bracketing silking as the non-barren plants which had HI in different ranges (Table 3.9). Barren plants having similar PGRs, EGRs and partitioning index as non-barren plants were found for CG102 in 2008 and CG60 in 2008. These non-barren plants had HI with a range of 0.002 to 0.36, and 0.01 to 0.45 for CG102 in 2008 and CG60 in 2008, respectively (Table 3.9, Fig. 3.16 and Appendix B.8). 145 Table 3.9. The minimum (Min) and maximum (Max) harvest index (HI) of non-barren plants when non-barren plants had similar values with barren plants (i.e., final grain yield per plant = 0 g) in plant growth rate during the critical period bracketing silking (PGRs), or ear growth rate during the period bracketing silking (EGRs), or partitioning index (i.e., EGRs/PGRs) or all the three traits for parental inbred lines CG102 and CG60 growing across different plant densities in 2007 and 2008. The plant densities were 40,000 and 120,000 plants ha-1 in 2007, and 80,000; 120,000 and 160,000 plants ha-1 in 2008. The criteria for similar value in PGRs, EGRs and partitioning index is less than or equal to 0.01 gram per plant per growing degree day (g plant-1 GDD-1), 0.005 g plant-1 GDD-1 and 0.01, respectively. Year Traits with similar value Genotype HI of non-barren plants Min Max 2007 PGRs CG102 None None EGRs CG102 0.023 0.374 partitioning index CG102 0.023 0.504 PGRs, EGRs and partitioning index CG102 None None 2008 PGRs CG102 0.002 0.454 EGRs CG102 0.002 0.356 partitioning index CG102 0.002 0.370 PGRs, EGRs and partitioning index CG102 0.002 0.356 PGRs CG60 0.010 0.492 EGRs CG60 0.013 0.461 partitioning index CG60 0.013 0.509 PGRs, EGRs and partitioning index CG60 0.013 0.453 146 0.4 2007 2008 EGRs (g plant-1 GDD-1) 0.3 0.2 0.1 0.0 CG60 CG102 F1 -0.1 Barren CG60 Barren CG102 Barren F1 -0.2 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.0 0.1 -1 0.2 0.3 0.4 0.5 0.6 0.7 -1 PGRs (g plant GDD ) Figure 3.17. Relationships between estimated ear growth rate during the critical period bracketing silking (EGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1) and estimated plant growth rate during the critical period bracketing silking (PGRs) in g plant-1 GDD-1 of parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. For each genotype, each dark grey symbol represents an individual plant. The black symbol represent the ultimately barren plants (i.e., grain yield per plant = 0 g). The number of plants was 69, 70 and 82 for CG60, CG102 and the F1 in 2007, respectively. The number of plants was 141,149 and 146 for CG60, CG102 and the F1 in 2008, respectively. 147 3.3.4 Barren plants and dominated plants of a plant hierarchy When at least one barren plant is present within a genotype × plant density × year combination, two ways could be used to categorize individual plants. Grain yield is one way to class barren and non-barren plants. Above-ground plant dry matter at PM is the other way to class d plants (i.e., those plants in the lower 1/3 of the PDMPM distribution), D plants (i.e., those plants in the upper 1/3 of the PDMPM distribution) (Maddonni and Otegui, 2004, 2006), and intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution). According to both classifications, there were two situations in this study (Appendix B.9). The barren plants totally belonged to the d plants for CG102 at 120,000 plants ha-1 in 2007 and CG60 at 120,000 plants ha-1 in 2008. In such situation, the barren and d plants could be divided into Bd plants and NBd plants (Appendix B.9). In the other situation, barren plants partially belonged to the d plants for CG102 at 80,000; 120,000 and 160,000 plants ha-1 in 2008 and CG60 at 160,000 plants ha-1 in 2008. The barren and d plants could be further divided into three subpopulations: Bd plants, NBd plants and BID plants (Appendix B.9). The F1 at 160,000 plants ha-1 in 2008 had only one barren plant. Therefore, the results in this section (3.3.4) will mainly present the six inbred × plant density × year combinations (Appendix B.9). The reasons to study the relationship between barren plants and d plants and within barren plants are to further characterize barren plants in analytical and comparable ways. Barrenness is the extreme case of dry matter partitioning into the GY and the d plants are in the proportion of low PDMPM. Within barren plants, the Bd and BID plants might experience different physiological processes of becoming barren. In addition, the three subpopulations bring 148 three scenarios of growth and dry matter partitioning: First, Bd plants with low PDMPM and zero dry matter partitioning; second, NBd plants with low PDMPM and having dry matter partitioning; third, BID plants with relatively high PDMPM but zero dry matter partitioning. Comparing these three subpopulations could help us understand mechanisms behind plant growth and dry matter partitioning. 3.3.4.1 Difference in growth throughout development and partitioning at the subpopulation level The three genotypes differed in the relationship between HI and PDMPM (Appendix B.10). Both the d, intermediate and D CG60 plants exhibited variation in HI. However, there seemed no relationship between HI and PDMPM for d CG102 plants in 2007 and 2008. The d F1 hybrid plants maintained stable HI similar to the NBID plants. The minimum PDMPM of barren CG102 plants declined with the increase of plant density, however, this trend could not be found in CG60. Higher plant density did not widen the range in PDMPM for both inbred lines. However, the higher the plant density was, the more likely barren plants appeared among the intermediate and D plants for both inbred lines. To determine differences among subpopulations, phenological differences, PDM throughout development, EDM throughout development, flowering dynamics, as well as PGRs, EGRs and partitioning index were examined. When barren plants belonged to the d plants, the Bd and NBd plants did not exhibit differences in LT stage and PDM throughout development (Table 3.10; Appendixes B.11 and B.12). The only two exceptions were CG102 at 120,000 plants ha-1 in 2007 where Bd plants had a subtle advance in LT stage development than NBd 149 Table 3.10. Comparisons among different subpopulations in above-ground plant dry matter (PDM), ear dry matter (EDM) throughout development, plant (PGRs) and ear growth rate during the critical period bracketing silking (EGRs), and partitioning index (i.e., EGRs/PGRs) for two parental inbred lines CG60 and CG102 grown at different plant densities in 2007 and 2008. Presented inbred × plant density × year combinations had at least one barren plant (i.e., grain yield per plant = 0 g). Plant hierarchies within a combination are viewed according to PDM at physiological maturity (PDMPM) as d plants (i.e., plants in the lower 1/3 PDMPM distribution), intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). When assessing both barren plants and dominated (d) plants, the plants could be barren d (Bd) plants, non-barren d (NBd) plants when barren plants were only present in the d plants. When barren plants were present in the intermediate and D plants, barren plants and d plants could be grouped into Bd plants, non-barren d (NBd) plants, barren intermediate and D (BID) plants, respectively. The six PDM sampling stages in 2007 were 8-leaftip (LT) stage (PDM1), 12-LT stage (PDM2), 14-LT stage (PDM3), silking (PDMs), 2 wk after silking (PDMs+2) and PM (PDMPM), respectively. The five PDM sampling stages in 2008 were 11-LT stage (PDM2), 15-LT stage (PDM3), silking (PDMs), 2 wk after silking (PDMs+2) and PM (PDMPM), respectively. The three EDM sampling stages in 2007 and 2008 were silking (EDMs), 2 wk after silking (EDMs+2) and PM (EDMPM), respectively. Year Inbred Plant density (plants ha-1) Subpopulation PDM1 PDM2 PDM3 PDMs 2007 CG102 120,000 Bd 1.4 a† 7.3 a 24.7 a NBd 1.2 a 7.2 a Bd NA ‡ NBd 2008 CG60 120,000 160,000 2008 CG102 80,000 120,000 160,000 † PDMs+2 PDMPM EDMs EDMs+2 EDMPM 48.7 a 53.2 a 74.6 a 0.4 a 6.5 a 23.9 a 47.7 a 64.5 a 73.3 a 0.4 a 9.2 a 27.0 a 65.9 a 66.6 a 50.3 b NA 8.6 a 29.5 a 63.7 a 71.0 a Bd NA 11.6 a 29.9 a 51.8 a BID NA 13.1 a 39.1 a NBd NA 9.5 a Bd NA BID Partitioning index PGRs EGRs 5.4 b 0.09 a 0.04 a 0.40 a 8.6 a 15.9 a 0.12 a 0.05 a 0.40 a 5.0 a 9.3 a 1.0 b 0.21 a 0.17 a 0.83 a 71.7 a 5.2 a 12.4 a 29.2 a 0.18 a 0.08 b 0.49 b 58.3 a 41.0 b 3.5 a 5.1 b 2.1 b 0.11 a 0.02 b 0.15 b 65.0 a 69.8 a 66.0 a 7.2 a 6.8 ab 4.5 ab 0.13 a 0.00 ab -0.01 ab 25.9 a 47.7 a 57.1 a 47.5 b 4.2 a 8.4 a 17.2 a 0.12 a 0.05 a 0.39 a 11.1 a 45.6 a 76.6 a 96.8 a 91.1 a 0.6 a 4.2 a 7.7 a 0.19 a 0.04 a 0.20 a NA 11.7 a 44.4 a 82.8 a 111.5a 104.0 a 0.5 a 4.2 a 6.0 a 0.24 a 0.04 a 0.15 a NBd NA 10.3 a 39.8 a 78.4 a 99.6 a 91.8 a 1.1 a 8.0 a 14.3 a 0.22 a 0.07 a 0.31 a Bd NA 10.0 b 40.8 a 73.0 a 88.7 a 73.3 b 0.6 b 2.5 b 6.5 b 0.20 a 0.03 b 0.14 b BID NA 10.9 a 45.9 a 76.3 a 96.5 a 90.0 a 0.7 b 2.4 b 2.5 b 0.20 a 0.03 b 0.14 b NBd NA 8.7 c 32.0 b 73.2 a 88.2 a 76.0 b 2.8 a 7.3 a 23.7 a 0.23 a 0.07 a 0.30 a Bd NA 9.7 b 24.1 b 53.5 b 66.5 b 49.3 b 1.1 a 4.2 a 2.5 b 0.11 a 0.02 a 0.17 a BID NA 13.3 a 37.1 a 64.7 a 84.5 a 72.1 a 1.7 a 6.3 a 5.9 a 0.12 a 0.03 a 0.25 a NBd NA 10.1 ab 26.4 ab 57 ab 68.6 b 49.8 b 2.8 a 7.7 a 10.1 a 0.11 a 0.03 a 0.29 a Different letters in bold within a row of inbred × plant density × year combination indicate significant difference (P < 0.05) using non-parametric tests. ‡ NA, not applicable. 150 plants (7.3-LT vs. 7.0-LT) and CG60 at 120,000 plants ha-1 in 2008 where Bd plants exhibited lower PDMPM values. When barren plants did not totally belong to the d plants, no difference between Bd and NBd plants was present with one interesting exception. Compared to the NBd plants, the Bd plants had significantly higher PDM and similar LT stages at the first two measurement periods and then similar PDM as NBd plants for CG102 at 120,000 plants ha-1 in 2008. When comparing BID to NBd plants, no difference was evident at 80,000 plants ha-1. At 120,000 plants ha-1, the BID CG102 plants had significantly advanced development in LT stage and higher PDM than NBd plants at the first two vegetative measurement periods (10.1-LT vs. 9.2-LT and 14.0-LT vs. 13.2-LT). The difference disappeared around silking and was reestablished at PM. At 160,000 plants ha-1, the BID CG102 plants exhibited higher final leaf number and PDMs+2, while no difference was present for CG60. When comparing the Bd and BID plants, at 80,000 plants ha-1, no significant difference was evident. At 120,000 plants ha-1, the BID plants had higher LT stage (10.1-LT vs. 9.4-LT) and PDM than Bd and then similar growth and development through 2-wk post-silking. At 160,000 plants ha-1, the differences in PDM between Bd and BID CG102 plants was evident at the first measurement period and maintained through 2-wk post-silking, while no differences were evident for CG60 at the corresponding period. When barren plants totally belonged to the d plants, EDM had similar trends as PDM with the exception that the NBd plants always had higher EDMPM than Bd plants (Table 3.10 and Appendix B.13). When barren plants did not totally belong to the d plants, the trends in EDM reflected the ones in PDM with three exceptions. First, in the comparison between Bd and NBd plants, although no difference in PDM was evident from silking to PM for CG102 at 120,000 151 plants ha-1, NBd plants had higher EDM from silking to PM. Similarly, at 160,000 plants ha-1, NBd plants had higher EDMs+2 than Bd and similar PDMs+2 as the Bd plants. Both NBd CG60 and CG102 had higher EDMPM than Bd although they had similar PDMPM. Second, in the comparison between BID and NBd CG102, regardless of the significance of PDM, NBd had higher EDM than BID from silking to PM at 120,000 plants ha-1 in 2008 and similar EDM as BID at 160,000 plants ha-1 in 2008. Third, in the comparison between Bd and BID plants, regardless of the difference in PDM, no difference in EDM was present with one exception for CG102 at 160,000 plants ha-1 in 2008 where BID had higher EDMPM than Bd plants. In terms of the flowering dynamics, when no silk emergence was present within a subpopulation (Appendix B.14), percentage of no silk emergence was selected as the comparison criterion. When barren plants totally belonged to the d plants, the Bd plants had significantly longer ASI (9 d vs. 5 d) and GDDsilking (806 vs. 759) than NBd plants for CG102 at 120,000 plants ha-1 in 2007. The percentage of no silk emergence for Bd CG102 plants at 80,000; 120,000 and 160,000 plants ha-1 in 2008 and Bd CG60 plants at 160,000 plants ha-1 in 2008 were 75%, 91%, 100% and 18%, respectively. The percentage of no silk emergence for BID CG102 plants at 80,000; 120,000 and 160,000 plants ha-1 in 2008 and BID CG60 plants at 160,000 plants ha-1 in 2008 were 100%, 92%, 95% and 33%, respectively. When comparing the Bd plants to BID plants, they had similar percentage of no silk emergence for each inbred × plant density combination. Interestingly, no significant differences in PGRs were observed among the three subpopulations no matter whether barren plants totally belonged to d plants or not (Table 3.10 152 and Appendix B.15), which reflected the PDM dynamics during the period bracketing silking. However, the difference in EGRs only reflected the difference in EDMs and EDMs+2 for CG102 at 120,000 plants ha-1 and CG60 at 160,000 plants ha-1 in 2008, but did not reflect the similarity in EDM dynamics for CG60 at 120,000 plants ha-1 in 2008. The difference in partitioning index reflected the underlying relationship between EGRs and PGRs for CG102 at 120,000 plants ha-1 and CG60 at 160,000 plants ha-1 in 2008, but not for CG60 at 120,000 plants ha-1 in 2008. For CG60 at 160,000 plants ha-1 in 2008, the BID plants were distinguished from d plants in that they exhibited zero EGRs and negative partitioning index value (Table 3.10). 3.3.4.2 Similarity in growth throughout development and partitioning at the individual plant level Examining the occurrence of similarity in growth, development and dry matter partitioning could reveal how distinguishable are the three subpopulations before PM and the chance of two individual plants with similar physiological trait(s) ultimately belonging to different subpopulations. To determine whether similarities were present between two individual plants from different subpopulations, phenological development, PDM throughout development, EDM throughout development, flowering dynamics, as well as PGRs, EGRs and partitioning index were examined at the individual plant level. When barren plants totally belonged to the d plants for CG102 at 120,000 plants ha-1 in 2007 and CG60 at 120,000 plants ha-1 in 2008, similarity in PDM (i.e., difference in PDM ≤ 0.03 g plant-1), EDM (i.e., difference in EDM ≤ 0.015 g plant-1), same LT stage, combination of PDM and LT stage and flowering dynamics were present in 153 several sampling stages (Table 3.11 and Appendix B.16). The same LT stage were present between Bd and NBd plants at each sampling stage, however, they did not all go through the same LT stage development (Appendix B.12). Barren d and NBd plants with similar EDMs and same ASI (or GDDsilking) were not found (Table 3.11). When barren plants did not totally belong to the d plants, both genotype and plant density appeared to influence similarities in PDM, EDM, the combination of PDM and LT stage, as well as the combination of PGRs, EGRs and partitioning index (Table 3.11 and Appendix B.16). Comparing to CG102 at 160,000 plants ha-1, similarities in traits mentioned above among individual plants from different subpopulations were less frequently observed in CG60 at the same plant density in 2008 (Appendix B.16). Similarities in the traits were more frequently observed for CG102 at 120,000 and 160,000 plants ha-1 in 2008, less frequently observed for CG102 at 80,000 plants ha-1 in 2008 (Appendix B.16). Comparing to the results in PDMs, PDMs+2 and PDMPM, similarities in EDMs, EDMs+2 and EDMPM between plants from different subpopulations were more frequently observed at the corresponding stages (Appendix B.16). The same LT stage development over different sampling stages was present among plants from different subpopulations in each genotype × plant density combination (Appendix B.12). However, not all Bd, BID and NBd plants went through the same LT stage development over different sampling stages for CG102 at 120,000 and 160,000 plants ha-1 in 2008 and CG60 at 160 ,000 plants ha-1 in 2008 (Appendix B.12). Only BID and NBd plants went through the same LT stage development over different sampling stages for CG102 at 80,000 plants ha-1 in 2008. Genotype seemed to affect the occurrence of the same flowering dynamics among different 154 Table 3.11. Summary of similarities in combination of above-ground plant dry matter (PDM) and leaftip (LT) stage, flowering dynamics (anthesis to silking interval (ASI) and growing degree days from planting to silking (GDDsilking) and the combination of ear dry matter around silking (EDMs) and flowering dynamics among different subpopulations for two parental inbred lines CG60 and CG102 grown at different plant densities in 2007 and 2008. Presented inbred × plant density × year combinations had at least one barren plant (i.e., grain yield per plant = 0 g). Plant hierarchies within a combination are classed according to PDM at physiological maturity (PDMPM) as d plants (i.e., plants in the lower 1/3 PDMPM distribution), intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). When assessing both barren plants and dominated (d) plants, the plants could be barren d (Bd) plants, non-barren d (NBd) plants when barren plants were only present in the d plants. When barren plants were present in the intermediate and D plants, barren plants and d plants could be grouped into Bd plants, non-barren d (NBd) plants, barren intermediate and D (BID) plants, respectively. The five PDM sampling stages before PM in 2007 were 8-LT stage (S1), 12-LT stage (S2), 14-LT stage (S3), silking (S4), and 2 wk after silking (S5), respectively. The four PDM sampling stages in 2008 were 11-LT stage (S2), 15-LT stage (S3), silking (S4) and 2 wk after silking (S5), respectively. The similarity in PDM and EDM between two individual plants is defined as less than or equal to 0.3 and 0.15 g differences, respectively. The existence of at least two plants with similarity in growth and same in development is marked with symbol. Year Genotype Plant S2 S3 S4 S5 ASI GDDsilking ASI and EDMs and EDMs and Subpopulations S1 density GDDsilking ASI GDDsilking (plants ha-1) 2007 2008 2008 CG102 CG60 CG60 120,000 120,000 160,000 CG102 80,000 CG102 120,000 CG102 160,000 Bd Bd Bd BID BID Bd BID BID Bd BID BID Bd BID NBd NBd NBd NBd Bd NBd NBd Bd NBd NBd Bd NBd NBd BID Bd 155 subpopulations. The exact same ASI or GDDsilking or both were more frequently observed in CG60 than CG102 (Table 3.11). Regardless of plant density, same flowering dynamics among different CG102 subpopulations were rare. Plants with similar ear growth and the same flowering dynamics (ASI or GDDsilking) from different subpopulations were few with the following two exceptions. Similar EDMs and same ASI, as well as similar EDMs and GDDsilking were found between BID and NBd plants for CG102 at 120,000 plants ha-1 in 2008, between Bd plants and NBd plants for CG60 at 160,000 plants ha-1 in 2008, respectively (Table 3.11). 3.3.5 Barrenness and morphological and physiological traits The size structure of physiological and morphological traits within a genotype × year combination could give insight into how initially similar plants differentiate. In order to minimize the artefacts of the chosen number of categories, the same number of categories was carefully chosen for all traits in each genotype × year combination when a barren plant was present (Koyama and Kira, 1956; Mack and Happer, 1977). The ratio between PDMPM and MaxPH (PDMPM/MaxPH) exhibited normal distribution for CG102 in 2008, but non-normal distribution for the other three genotype × year combinations (Fig. 3.18). Maximum PH was normally distributed for CG102 in 2008 and the F1 hybrid in 2008, with the other two genotype × year combinations following non-normal distributions (Appendix B.17). The PSLA and the largest leaf area were normally distributed for three genotypes in the four genotype × year combinations (Appendixes B.18 and B.19). The leaf length/leaf width of the largest leaf was normal distributed for CG60 in 2008 and the F1 hybrid in 156 350 30 250 200 Frequency of barren plants 20 10 0 CG102 in 2008 20 10 0 0.24 0.62 1.00 1.38 1.76 2.14 -1 Ratio (g cm ) 150 0.11 0.48 0.83 1.19 1.56 1.92 -1 Ratio (g cm ) 100 50 0 30 300 250 30 Plant number CG60 in 2008 Plant number PDMPM (g plant-1) 30 PDMPM/MaxPH ratio frequency Plant number Barren plants Non-barren plants 300 Plant number CG102 in 2007 20 10 F1 in 2008 20 10 200 0 0 0.11 0.56 1.01 1.46 1.91 150 0.21 -1 0.76 1.30 1.84 -1 Ratio (g cm ) Ratio (g cm ) 100 50 0 100 150 200 250 100 150 200 250 300 MaxPH (cm) Figure 3.18. Relationship between above-ground plant dry matter at physiological maturity (PDMPM) and maximum plant height (MaxPH) as well as the frequency distributions of the ratio between PDMPM and MaxPH for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8157 leaftip (LT) stage in 2007 and 4-LT stage in 2008. The dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution of the ratio, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.00, skewness = 0.50, kurtosis = -0.99, coefficient of variation (CV) = 40%, and mean (M) = 0.99. For CG60 in 2008 (n = 154): Pr < W = 0.01, skewness = 0.52, kurtosis = -0.14, CV = 37% and M = 0.56. For CG102 in 2008 (n = 155): Pr < W = 0.07, skewness = 0.33, kurtosis = -0.44, CV = 29%, and M = 0.48. For the F1 in 2008 (n = 153): Pr < W = 0.00, skewness = 0.68, kurtosis = 0.04, CV = 32%, and M = 0.72. 158 2008, non-normally distributed for CG102 in 2007 and 2008 (Appendix B.20). The stem elongation rate and ear diameter expansion rate followed non-normal distributions for the three genotypes in the four genotype × year combinations (Appendixes B.21 and B.22). The stem elongation rate of CG102 and the F1 exhibited bimodality in 2008. Moreover, the three genotypes exhibited similar CV values in PDMPM/MaxPH, MaxPH, PSLA, the largest leaf area and its leaf length/leaf width and stem elongation rate with the exception of ear diameter expansion rate. The relationship between PDMPM and MaxPH could give insight into the overall PDMPM distribution along the stem (Fig. 3.18). The ultimately barren plants could not be found in the several categories with the highest PDMPM/MaxPH for the three genotypes in the four genotype × year combinations. Barren plants were most concentrated in the categories with the lowest PDMPM/MaxPH for CG102 in 2007, CG60 in 2008 and the F1 in 2008 with the exception of CG102 in 2008. In 2008, plants with the lowest PDMPM/MaxPH were the ultimately barren plants for the three genotypes. The ultimately barren plants were present in the close-to- and below-average categories of the MaxPH for CG102 in 2007, and in a wide range of MaxPH for CG102 in 2008 and CG60 in 2008 (Appendix B.17). The ultimately barren F1 plant was in the below-average category of MaxPH (the third lowest category). The differences between the tallest and the shortest MaxPH for barren CG60 in 2008 and CG102 in 2008 were 57 and 68 cm, respectively. The ultimately barren CG102 plants were present in the above- and below-average categories of PLSA, the largest leaf area and its leaf length/leaf width in 2007 and in a wide range of PSLA, the largest 159 leaf area and its leaf length/leaf width in 2008 (Appendixes B.18-B.20). The ultimately barren CG60 plants in 2008 were also distributed in a wide range of PSLA, the largest leaf area and in the above- and below-average categories of leaf length/leaf width. The ultimately barren F1 plant was in the below-average category of PSLA (the fourth lowest category), the largest leaf area (the fourth lowest category), and above-average categories of leaf length/leaf width. Comparing within the barren plants of an inbred × year combination, the largest PSLA (i.e., 3815 cm2) of a barren CG102 plant doubled the size of the smallest PSLA (i.e., 1703 cm2) of another barren CG102 plant in 2008 (Appendix B.18). In 2008, the leaf length/leaf width of the largest leaf was significantly different among the three genotypes, with CG102 being the largest, the F1 hybrid being the middle and CG60 being the smallest. Stem elongation rate for an individual plant is equivalent to the slope of the linear relationship between PH and thermal time during the linear stem elongation period. Coefficients of determination of the linear regressions were between 0.86 and 0.97 for CG102 in 2007 and between 0.94 and 1.00 for the three genotypes in 2008. The ultimately barren CG102 plants were found in the average and below-average stem elongation rate in 2007 and in almost every category of stem elongation rate except for the highest stem elongation rate in 2008 (Appendix B.21). The ultimately barren CG60 plants were found in a wide range of stem elongation rate. The only F1 barren plant was in the lowest category of stem elongation rate. The highest stem elongation rate of a barren plant could be 1.3, 1.7, and 1.9 times the lowest stem elongation rate of a barren plant for CG102 in 2007, CG102 in 2008 and CG60 in 2008, respectively. Ear growth could be measured as a permanent increase in physical dimensions including 160 ED and ear length. In this study, only the ED was used to estimate ear growth. The ear diameter expansion rate for two inbred lines in 2008 varied from negative to positive values with CG102 in 2007 and the F1 in 2008 having positive values of ear diameter expansion rate (Appendix B.22). The ultimately barren CG102 plants had above- and below-average values of ear diameter expansion rate in 2007 and a wide range of ear diameter expansion rate in 2008. Within an inbred × year combination, an ultimately barren ear expanded as much as 1.1 and 1.4 mm per day for CG102 in 2008 and CG60 in 2008, respectively. 161 3.4 Discussion Research on barrenness could be the most extreme way to study yield as a complex trait. Few studies have examined the physiological processes underlying maize barrenness under field conditions, especially for homogenous plants with similar initial plant size and development and uniform spatial pattern. Understanding the dynamics of growth and development throughout the life cycle for individual barren plants could give insight into yield loss mechanisms compared to the rest of the non-barren plants which had similar initial growth and development. Therefore, the main objective of the study was to characterize barren plants in growth dynamics through development and plant dry matter partitioning at the canopy, subpopulation and mainly individual plant levels in two parental inbred lines and their F1 hybrid. 3.4.1 Allometric models to predict individual barren and non-barren plants 3.4.1.1 Comparison of allometric models After selecting models with intercepts for PDM estimation in equation [3.3] and the power function for EDM estimation in equation [3.8], the PDM should be the sum of vegetative parts and reproductive parts. The PDM equation during reproductive stages should be PDM = a + b × (SV or SVmax) + c × EDd [3.11] Where a, b, c and d are model parameters and PDM has units of g plant-1. However, the equation [3.11] formula had similar R2 as the equation [3.4] formula. In addition, Proc REG to calculate R2 for equation [3.4] is a well-established SAS procedure with outlier detection function and directly computing R2 and RMSE, compared to the indirect calculating R2 for equation [3.11] by Proc NLIN. Therefore, the allometric relationship in equation [3.4] was 162 used to estimate PDM. 3.4.1.2 Justification of allometric models and methodology Although the combined plant density models outperformed individual plant density models, significant bias happened between/among individual plant densities within the combined plant density models. Significant bias between/among individual plant densities within the combined plant density models was found in two situations in this study (Tables 3.4 and 3.5). In 50% of cases for PDM estimation, the underestimation (i.e., positive RP) in one plant density was significantly different from overestimation (i.e., negative RP) in another plant density within a combined plant density model. In the other 50% of cases, the combined plant density model fit well with a plant density but exhibited lack of fit for another plant density. For both situations, the bias between/among plant densities within a combined plant density model could be due to the following two scenarios. First, using a combined plant density model and an individual plant density model would have similar bias. Second, using a combined plant density model exhibited lack of fit of model compared to using an individual plant density model for a not-fitting-well plant density in the combined plant density model. In fact 67% of significant bias was due to the first scenario for PDM estimation. Thirty-three percent of significant bias was due to using combined plant density model for PDM estimation. Therefore, in 17% cases, combined plant density models exhibited lack of fit of model for PDM estimation. Using the similar rationale as combining plant density, all the allometric models that combined different factors in the literature (Appendix A.1) should be justified to avoid significant bias before any further data analyses. Due to using both combined plant density models and individual plant density models 163 as well as the combination of both models, there were no significant bias in EDM estimation in this study. 3.4.1.3 Evaluation of allometric models In order to evaluate whether the developed models have improved the prediction of plant and ear growth, the models here were compared to previous published models using the same genotypes during similar measurement periods (Echarte and Tollenaar, 2006). The study here had larger sample size and used different allometric models compared to their study (Appendix A.1). The average R2 of their allometric models for PDM estimation across different stress treatments, reproductive measurement stages and years were 0.82, 0.88 and 0.79 for CG60, CG102 and the F1, respectively (Echarte and Tollenaar, 2006). The average R2 here across two reproductive stages and two years were 0.90, 0.84, and 0.93 for CG60, CG102 and the F1, respectively (Table 3.2). Similarly, the average R2 of their models for EDM estimation were 0.81, 0.93 and 0.96 for CG60, CG102 and the F1, respectively (Echarte and Tollenaar, 2006). The average R2 here were 0.79, 0.91, and 0.85 for CG60, CG102 and the F1, respectively (Table 3.3). Therefore, the models used in this study have improved the accuracy of CG60 and the F1 PDM estimation and decreased the accuracy of CG102 PDM estimation. The models decreased the accuracy of EDM estimation for the three genotypes slightly. On the one hand, inclusion of intercepts in their models for EDM estimation is not biologically meaningful (Appendix A.1). When ED and ear length is zero, EDM should be zero. On the other hand, based on R2 values, their allometric models including ear length seemed to increase the accuracy of EDM estimation compared to the models in this study. Whether models that are consistent across genotype, 164 reproductive growth stage and year, as well as inclusion of ear length will outperform the models here is questionable. Three areas of bias could affect the accuracy of PDM and EDM estimation, which included extrapolation, significant bias by using combined plant density models and the absolute RP larger than 5% (Appendix B.2). Previous studies indicate that individual plants of a genotype are homogenous with respect to the allometric relationship across a wide range of resource availability per plant within a growing season. A wide range of resource availability per plant is created by different plant densities, water and N availability or their combinations. Studies from Argentina, USA and Canada have shown this pattern. For examples, across different plant densities from 20,000 to 200,000 plants ha-1, same allometric relationships for PDM and EDM at 2 wk before/after silking are fit for a hybrid (Vega et al., 2001). Across different levels of water availability during the critical period bracketing silking, same allometric relationships for PDM are fit within a genotype at silking and 2 wk after silking for CG60, CG102 and their F1 hybrid (Echarte and Tollenaar, 2006). The same pattern is shown for EDM at 2 wk after silking (Echarte and Tollenaar, 2006). Using different plant densities and N rates, Boomsma et al. (2009) assume a general allometric relationship across different plant densities and N availability for two commercial hybrids. Therefore, the PDM of a plant density or a N rate at V14, R1, and R3 are deduced by the average PH and SDb non-destructively. They conclude that plants should have the lowest PDM at these stages for the treatment of the highest plant density × lowest N availability (Boomsma et al., 2009). In addition, same allometric relationships are fit over different growth stages across different plant densities (Maddonni and Otegui, 2004; Pagano and Maddonni, 2007; Pagano et al., 2007) or contrasting plant density × N (Rossini et al., 2011). The 165 growth stages are from vegetative stages to silking for PDM estimation, and from silking to 2 wk after silking for EDM estimation (Rossini et al., 2011). Therefore, the allometric relationships developed in this thesis could represent a wider range of data than sampled data range. When focusing on genotype × plant density × year combinations where barrenness occurred, only seven combinations were considered. The F1 hybrid at 160,000 plants ha-1 had better performance compared to the two inbred lines. 3.4.1.4 Limitation and improvement of allometric models The only one dimensional measurement of ED could be a potential problem for EDM estimation in inbred plants. Maize ear growth is at least in two dimensions: ED and ear length. Genotypes might be different in how ears expand and elongate. In this study, the ears of two parental inbred lines and the F1 hybrid are in the shape between cone and cylinder. However, only the two inbred lines exhibited shrinkage in ED across 80,000; 120,000 and 160,000 plants ha-1 in 2008 (8% and 6% for CG60 and CG102, respectively) (Appendix B.22). The decrease in ED might be compensated by the increase in post-silking ear length (Chapter 2 and Otegui and Bonhomme, 1998) or be related to other physiological mechanisms which will be discussed in the section 3.4.2.3. Because ears are covered by husks at the silking and post-silking stages and the unstraightness of shanks, the exact ear length is difficult to measure. When the ear elongates with a decrease in ED, the equation in Table 3.3 might estimate a decrease in EDMs+2 compared to EDMs and a negative EGRs during the period bracketing silking. Besides, CG60 plants sometimes have two ears (i.e., one primary ear and one small secondary ear) covered by the same husks, which might overestimate the primary EDM and bring estimation error. Similarly, 166 the shrinkage of SDb was observed in this study, as in a hybrid study by Boomsma (2009), and could underestimate SV. Therefore, the SD2 was introduced to improve accuracy of PDM estimation in six out of 12 genotype × sampling stage combinations in 2008. Therefore, common equations on allometric models might not fit best for all genotypes due to different plant and ear morphology. A preliminary study on plant and ear morphological change over time could improve the morphometric variable selection and formula formation for allometric models. In addition, to avoid extrapolation, the range of a morphometric variable such as SV (SVmax) and ED in the destructive sampling areas should cover the range of the same variable in the nondestructive measurement areas at the same sampling stage. Especially, plants with zero ED at reproductive stages should be included to improve the prediction of the zero ED plants at high plant density in the non-destructive measurement areas. With the increasing application of allometric models on plant research, standardized sets of criteria for allometric model selection and evaluation should be established to help professionals assess models effectively (Alexandrov et al., 2011). 3.4.2. Characterizing barren plants Barrenness is the most extreme condition for GY as a complex trait. Characterizing barren plants under field conditions could improve our understanding of yield loss mechanisms as well as identify the ultimately barren plants. Possible prediction of barren plants before PM could facilitate researchers to identify the ultimately barren plants for further investigation. 167 3.4.2.1 Approach to study barren plants Maize barrenness has been studied at the canopy (Buren et al., 1974) and individual plant level (Vega and Sadras, 2003; Boomsma, 2009). In this study, barren plants were characterized by the physiological processes underlying GY formation in a top-down approach from canopy level to subpopulation level, to individual plant level. The physiological processes were dissected into PDM throughout development, EDM throughout development and partitioning during the critical period bracketing silking and at PM. The top-down approach included (1) comparing average barren plants to average plants of a plant population; (2) comparing average barren plants to average non-barren plants of a plant population; (3) comparing individual barren plants to average plants of a plant population; (4) comparing among individual barren plants; (5) comparing Bd to NBd plants; (6) comparing BID to NBd plants; and (7) comparing Bd to BID plants. The genetic materials of the study were two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 which showed genotypic difference in kernel set mechanisms (Echarte and Tollennar, 2006). Within a genotype, the individual plants had similar initial plant growth and development before the stage of ear initiation, and grown under uniform spatial pattern. Plant density on the one hand, was used to create a broad range of physiological and morphological values to characterize barren plants within a genotype, and on the other hand was used to examine the difference among genotypes and within a genotype in response to plant density at the canopy, subpopulation and individual plant level. 168 3.4.2.2 Unpredictability of barrenness in two parental inbred lines Due to there being only one F1 barren plant, the discussion of unpredictability of barrenness is focused on the two parental inbred lines. Barrenness was unpredictable in terms of plant growth and phenological development from early vegetative to post-silking stages for the two inbred lines. It was predicted that the ultimately barren plants were preconditioned by their relatively lower vegetative growth compared to the non-barren plants and ultimately became barren. However, the results showed that the individual barren plants did not always follow linear growth and exhibited differential responses to their previous growth and development (Figs. 3.9–3.11; Appendixes B.3 and B.4). At the individual plant level, it was found that barren and non-barren plants, Bd and NBd plants or/and BID and NBd plants had similar PDM and were at the same LT stage at a phenological stage before PM (Table 3.11 and Appendix B.16). Similarly, barrenness could not be predicted by ear growth and flowering dynamics. For CG102, EDMs seemed to be a good predictor for barrenness because barren plants were located at the lowest EDMs frequency distribution in 2008. However, the trend was not consistent between the two years. Even if the association between EDMs and barrenness exists without experimental year effect, the exact frequency distribution that barren ears belong to within a plant population needs to be studied to possibly predict barrenness. In addition, no silk emergence could be a good predictor for barrenness and it explained most barrenness for CG102 in 2008. A ‘threshold’ value of EDMs for silk emergence seemed to exist in CG102 at each plant density in 2008 but not in 2007 (Fig. 3.14). However, non-barren plants with EDMs within the ‘threshold’ values exhibited silk emergence. Therefore, a threshold EDMs could not condition no silk emergence for CG102. For CG60, neither EDM before PM nor ASI and GDDsilking were 169 associated with barrenness. And similar EDM, ASI and the combination of ASI and GDDsilking were found between Bd and NBd plants or/and BID and NBd plants (Table 3.11 and Appendix B.16). Barrenness could not be predicted according to PGRs, EGRs or partitioning index. Although a threshold value of PGRs for HI was estimated for CG102 in 2007 and CG60 in 2008 (Table 3.8), and a threshold value of EGRs for HI was estimated for CG60 and CG102 in 2007, there was no consistent estimation between two years for either inbred line. Therefore, barren inbred plants were still unpredictable. Compared to previous estimations of the PGRs threshold for kernel set using the same genotypes (Echarte and Tollenaar, 2006), the threshold values here (PGRs threshold values of 0.05 g plant-1 GDD-1 for CG60 and 0.06 g plant-1 GDD-1 for CG102) were much smaller than theirs (PGRs threshold values of 0.09 - 0.10 g plant-1 GDD-1 for CG60 and 0.17 - 0.20 g plant-1 GDD-1 for CG102). Echarte and Tollenaar (2006) used 60,000 plants ha-1 and had consistent estimation of PGRs threshold values for kernel set across experimental year and water stress and plant density treatment. The inconsistent performance here was probably due to the plant density as an experimental factor instead of water stress. For plant density treatment under field conditions, Ritchie and Wei (2000) also found few conclusive PGRs for estimating barrenness. For the two inbred lines, the lack of threshold values for barrenness may be due to the involvement of other mechanisms in determining kernel number (Ritchie and Wei, 2000). If there are other threshold values of plant growth for barrenness associated with those mechanisms, it is likely that another threshold value of a physiological parameter could be used together with PGRs and EGRs to predict barrenness. For the F1 hybrid, threshold values were lacking because almost all the PGRs and EGRs are above the threshold 170 values and the one or two data points of PGRs (EGRs) with zero HI can determine the x-axis of the hyperbolic function, which might not be the real threshold value of PGRs (EGRs) for the F1. Barrenness for a genotype could be predicted if (i) there is a common pattern between PGRs (EGRs) and HI (KNP) and (ii) the estimation of PGRs (EGRs) threshold values for HI or kernel set is well established across growing seasons and different levels of an experimental factor that causes variation in PGRs and EGRs. There was no association between HI and partitioning index; therefore, dry matter partitioning during the period bracketing silking could not condition barrenness. 3.4.2.3 Above-ground plant dry matter at physiological maturity of barren plants For average barren plants, trends of less PDMPM than PDMs+2 for two parental inbred lines in 2008 were similar to the results of PDM for three hybrids after bagging ears or removing unpollinated ears (Crafts-Brandner et al., 1984). The study presented in this thesis in a natural way, and the study of Crafts-Brandner et al. (1984), both produced barren plants at PM. The three hybrids in their study exhibited decrease of PDMPM compared to PDM at 8 d and 30 d after anthesis at the canopy level, when pollination was prevented by bagging the ears. In the present work at the individual plant level in both inbred lines, there were barren plants that exhibited higher PDMPM than PDMs+2; plants had no silk emergence similar to the effects of bagging ears from pollination. The zero EGRs of BID plants for CG60 at 160,000 plants ha-1 might indicate the early onset of feedback inhibition during the critical period bracketing silking. The allometric relationship is based on EDM and fresh ED. The negative partitioning index is possibly due to two reasons. First, ED at 2 wk after silking was less than at silking, and low 171 moisture content and change in ear shape could cause ear shrinkage. Second, they were measurement errors. 3.4.2.4 Effects of genotype, plant density and genotype × plant density interaction Genotype, plant density and genotype × plant density interaction had different effects on plant growth and development. CG102 exhibited association between plant growth and development at the subpopulation level and ear growth (EDMs) and development (ASI or GDDsilking) at the canopy level (Fig. 3.14). The association of plant growth and development were exhibited between d and BID plants only at 120,000 plants ha-1 in 2008. Existence of plant hierarchy in development has rarely been reported compared to PDM dynamics through thermal time by past plant hierarchy studies (Maddonni and Otegui, 2004; Rossini et al., 2011). The association of ear growth and development in CG102 were consistent across plant densities in 2008. Strong association between EDMs and GDDsilking happened in the F1 at 160,000 plants ha-1 (Appendix B.6). Similarly the association between plant growth and ear development (Rossini et al., 2012), as well as ear growth and development (Borrás et al., 2007) were found in previous studies. However, association between growth and development was not found in CG60. CG60 and CG102 varied in response of barrenness to plant density. At the canopy level across same plant densities, CG102 was more susceptible to barrenness than CG60 (Figs. 3.1 and 3.2). At 120,000 and 160,000 plants ha-1, barren CG102 plants could extend to the D plant hierarchy and barren CG60 kept in d plant hierarchy or extended to the intermediate plant hierarchy (Appendix B.9). At the subpopulation level, the onset of differences among Bd, BID 172 and NBd plants in plant and ear growth happened later than 2 wk after silking in CG60, which was later than CG102 (Table 3.10). In addition, in contrast to CG102, CG60 had no response to plant density in terms of comparing plant growth among Bd, BID and NBd plants (Table 3.10). There were more similar plants in physiological traits regarding growth and development among individual Bd, BID and NBd plants in CG102 than CG60 (Table 3.11 and Appendix B.16). Plant density did not always increase PPV in plant and ear growth at the canopy and subpopulation (i.e., combination of barren and d plants) levels for CG60 and CG102 in 2008 (data not shown). However, at the individual plant level, plant density increased similarity in plant and ear growth among Bd, BID and NBd plants for both genotypes (Table 3.11 and Appendix B.16). At the individual plant level, the fewer similarities among Bd, BID and NBd plants in the combination of plant growth and development (Table 3.11) than in plant growth alone (Appendix B.16) suggested that plant development is also important to be considered. Since Bd, BID and NBd included plants with similar initial growth and development and at a later growth point, they were similar again in growth and different in development. So growth and development should be considered together. But the same logic could not apply for the ear growth and development, since the initial ear growth and development were different (Appendix B.13). Genotype × plant density interaction happened on plant growth at the subpopulation level (Table 3.10). Increased plant density only caused significant difference in plant growth at each measurement stage for CG102 at 160,000 plants ha-1 in 2008. At the same time, similarities in plant growth among individual Bd, BID and NBd plants were found almost at each measurement 173 period (Appendix B.16). Therefore, the trend in plant growth at the subpopulation level could not indicate the trend in plant growth at the individual plant level for CG102 at 160,000 plants ha-1 in 2008. 3.4.2.5 Barrenness is not totally in relation to dominated plants In this study, barrenness was not totally confined to d plants for the two parental inbred lines. The relationship between barrenness and d plants varied by environmental year, genotype and plant density. Whether barrenness is totally related to d plants depends on the threshold value of PDMPM for HI. When the threshold value of PDMPM for HI is below 1/3 of the PDMPM distribution, the barrenness should be confined to d plants. 3.4.2.6 Barrenness and physiological and morphological traits In this study, physiological and morphological traits were used to characterize barrenness and the possible mechanism behind plant growth because all the traits are easier to measure and calculate non-destructively than the traits derived from allometric models. Generally, the ultimately barren plants were the thinnest or had the least PDMPM for their PH in 2008 (Fig. 3.18). No other physiological and morphological traits alone could explain barrenness for individual plants in the field. The study here did not compare to the previous studies on the frequency distribution of the same traits due to their analyses on a separate plant density basis (Daynard and Muldoon, 1983; Vega and Sadras, 2003; Boomsma, 2009). Shade avoidance response should not be the major cause for barrenness in this study. At 174 the canopy level, one of the most consistent effects of shade avoidance response on maize is the reduction in LT appearance from 6-LT to 11-LT with the standard of control plants with no shade avoidance response under no resource competition conditions (Page et al., 2009, 2010b, 2011). In the present study, the average barren plants had similar LT as non-barren plants at each sampling stage from 7-LT stage to final leaf number for CG102, and from 11-LT stage to final leaf number for CG60 (data not shown). Another constant characteristic of shade avoidance response is the significant increase in PH that happened before and around 10-LT stage under field environments (Page et al., 2009, 2010b, 2011). In the present study, barren and non-barren plants had similar PH at each sampling stages from 7-LT stage to 2 wk after silking for CG102 and from 11-LT stage to 2 wk after silking for CG60 except that barren plants exhibited significant higher PH from 13.7-LT stage to 2 wk after silking for CG102 at 120,000 plants ha-1 in 2008 (data not shown). The leaf length/leaf width of the largest leaf at post-silking increased with increase in plant density for all three genotypes in 2008 (data not shown). The longer and narrower leaf for 5-wk-old corn seedlings was regarded as the adaptive response to lower red/far-red ratio (Kasperbauer and Karlen, 1994). However, whether results here at postsilking could compare to their early seedling stage needs more consideration. Another typical shade avoidance response is taller plants producing lower yield (Smith and Whitelam, 1997). However, at the subpopulation level, the D plants always had a higher GY and MaxPH when there was a significance difference between D and d plants in MaxPH (data not shown). 175 3.4.2.7 Research limitation, values and implications The physiological characteristics of barrenness in the F1 hybrid could not be fully examined due to the low occurrence of barrenness at 160,000 plants ha-1 in both years. A higher plant density should be implemented to characterize barren F1 plants. Also, consistency of plant densities across years would make the results between two years more comparable. In order to overcome the experimental limitations and comprehend the mechanisms behind barrenness, broader genotypes should be collected and tested at broader plant densities and over multiple years. First, with the assumption of normal early ear development, three types of genotypes with different mechanisms related to intra-specific competition under crowding stress should be included: (i) genotypes that are dominated by direct competition for resource such as C, N and water with minimum sensitivity to changes in light quality; (ii) genotypes that respond to crowding stress with growth alteration mechanism instead of direct resource competition, such as a commercial hybrid reported by Clay et al. (2009); and (iii) genotypes that are affected by both direct resource competition and growth alteration mechanisms in different degrees. Second, however, when early ear growth and development prior to silking is inhibited or impaired such as embryo sac abortion (Moss and Downey, 1971) and atypical spikelets (Smith, 2012), genotypes differing in production and sensitivities of plant growth regulators should be tested. For example, Below et al. (2009) reported ten commercial hybrids could differ in their responses to ethylene and the incidence of ‘hollow husk’ barrenness. Due to the methodology of selecting similar initial plant in size and development, the initial variability of plant size and development would be relatively smaller compared to variation in the commercial field conditions. For a complex trait such as GY, the research used barrenness as an entrance to examine 176 the physiological processes underlying GY formation in maize. In addition, a top-down approach from canopy level to individual plant level was demonstrated and used to dissect physiological processes underlying barrenness into growth and dry matter partitioning. Partial barrenness, such as an ear with more than 1/3 unfilled kernels, is perhaps more important than complete barrenness. This could be examined in future studies. In addition, the association between growth and development indicates that future research could explore the cause-andeffect or coordination relationships between growth and development in field crops. 177 3.5 Conclusions In this study, the physiological characteristics of barren plants with similar initial growth and development and uniform spatial pattern were examined at the canopy, subpopulation and mainly individual plant levels. (i) Individual plants had differential responses to their previous growth and development in the two parental inbred lines. The physiological traits related to plant and ear growth and development, PGRs and EGRs as well as dry matter partitioning during the period bracketing silking could not characterize ultimately barren plants. Barrenness could not be predicted accurately for the two parental inbred lines. (ii) Barrenness is not totally confined to d plants for the two parental inbred lines. (iii) Physiological and morphological traits used in this study could not characterize barren inbred plants. (iv) In general, the allometric models could accurately estimate PDM and EDM at the individual plant level. The performance of allometric models will be improved after rigid development and justification. 178 Chapter 4. General Discussion and Conclusions 4.1 Summary of the Results and Conclusions The results in Chapter 2 highlight the period around the kernel row number (KRN) formation stage and less dry matter partitioning to the ear of the F1 hybrid than its parental inbred lines. At the KRN formation stage, plant-to-plant variability (PPV) in stem volume (SV) derived from the maximum width of stem diameter 2 cm above the ground level (SDb) (SVmax), which represents PPV in above-ground plant dry matter (PDM), affected PPV in spikelet number per row (SNPR) and maximum kernel row number (KRNmax). At this stage, SNPR exhibited a higher coefficient of variation (CV) than KRNmax for the three genotypes. Otherwise, there were no effects of PPV in SVmax on PPV in SNPR and KRNmax. These applied from 1.5-leaftip (LT) stages after the KRN formation for the three genotypes. In addition, the F1 exhibited less CV in SNPR and spikelet number per ear (SNPE), at the KRN formation stage, than the two parental inbred lines. Otherwise, the three genotypes generally had similar magnitude of CV in ear traits. Around the silking period, even though the F1 had higher PDM at silking (PDMs) and 1 wk after silking (PDMs+1), it exhibited significantly shorter ear length, less ear dry matter (EDM), and less dry matter partitioning to the primary ear (EDM/PDM) than the two inbred lines at the corresponding stages. The results in Chapter 3 highlight that the ultimate barren inbred individuals exhibited differential responses to their previous growth from vegetative stages to the critical period bracketing silking, and they exhibited differential responses to their previous phenological stage. The differential responses of barren plants to their previous growth indicated that the resource 179 availability at the individual plant level changed during these periods. Therefore, the ultimately barren plants could not be preconditioned by the vegetative PDM. In 2008, only some of the barren CG102 could be explained by low dry matter partitioning to the ear. The differential LT development rates might result in changes in the resource availability per plant. There were some interesting features in ear development, plant growth and development around the KRN formation stage for inbred CG102. The one-year field study at 80,000 plants ha-1 at the canopy level showed that (i) from 1.0-LT before KRN formation to 1.0-LT after KRN formation, CG102 exhibited relatively higher PPV in SNPR than following phenological stages, until 1 wk after silking (Fig. 2.12). (ii) Only during a 1.5-LT interval from KRN formation, the PPV in SVmax had effects on PPV in SNPR, and it affected PPV in SNPR more than PPV in KRNmax (Fig. 2.16). (iii) From ear initiation to KRN formation stage, CG102 needs more growing degree days (GDD) than the other two genotypes, but a similar LT interval as the other two genotypes (section 2.3.2). Furthermore, the two-year field study on CG102 at 120,000 plants ha-1 at the subpopulation level had consistently shown that (i) whether barren or not, the dominated (d) plants exhibited similar LT stage throughout development. (ii) Also, the intermediate and dominant (D) plants, whether barren or not, exhibited advanced LT stage and significantly higher PDM during the KRN formation stage (9-LT to 11-LT). (iii) Finally, the intermediate and D plants had significantly higher plant height (PH), indicating this was not a shade avoidance response. 180 4.2 Contributions This is the first study on PPV in ear development that couples with plant development from ear initiation until 1 wk after silking. It is also the first study on barrenness from the canopy, to the subpopulation, and to the individual plant level by dissecting barrenness with plant growth through development and dry matter partitioning in parental inbred lines and their F1 hybrid throughout the life cycle. For crop physiologists, the results differ with previous literature in hybrid studies and broaden the understanding of yield formation processes and intra-specific competition for inbred lines. For maize researchers, following ear and plant development from ear initiation to physiological maturity (PM) could contribute to (i) the general understanding of quantitative dynamics of PPV in early ear development related to PPV in plant development, as well as the similarities and differences among parental inbred lines and their F1 hybrid in these traits. (ii) It could also contribute to the knowledge of the possible importance of the period around KRN formation stage on PPV in SNPR and KRNmax for inbred lines. (iii) It contributes to the use of the top-down approach from the canopy to the subpopulation and to the individual plant level to study physiological processes underlying grain yield (GY) formation. (iv) Finally it can benefit the evaluation and demonstration of the allometric methodology to estimate PDM and EDM at the individual plant level. For plant ecologists, the results of the study could be used to develop new models regarding size inequality using individual plants with a similar initial size and development. 181 4.3 Research Limitations and Future Research 4.3.1 Effects of sampling individual plants that were not competitively bordered It would be best to select competitively bordered plants with the consideration of intraspecific competition effects on PPV and other ear and plant traits at a constant 80,000 plants ha-1. Competitively bordered plants refer to individual plants surrounded by adjacent plants under a target plant density. However, frequent selections of 20 competitively bordered plants at the same LT/developmental stage with similar initial plant size and development need more tagged plants and larger plot areas. Therefore, sampling plants that were not competitively bordered gradually dilutes plant density. The gradual reduced plant density had little impact on early growth and development for both plant and ear, but affected the results from late vegetative stages to tassel emergence (TE). Page et al. (2010a) showed that the onset of intra-specific competition of CG102 × CG108 at 80,000 plants ha-1 starts after 14-LT stage. Before the 14-LT stage, individual F1 plants within the population are not resource-limited. The inbred plants could start the intra-specific competition later than the F1 plants due to their smaller leaf area per plant. Smith (2012) reduced plant competition at 1 wk before silking by removing plants from 74,000 to 37,000 plants ha-1. The genetic material included a group of parental inbred lines and their F1 hybrid such as CG60, CG102 and CG60 × CG102 used in this study. Reduced plant competition did not affect the KRN, but did affect SNPE of the three genotypes, compared to the initial 74,000 plants ha-1. In this study, at the late stage sampling area, destructive samplings at silking and 1 wk after silking decreased plant density and reduced intra-specific competition at 1 wk after silking and PM. Future study should increase tagged plants and experimental area, and sample 10 competitively 182 border plants from ear initiation until post-silking and at PM. 4.3.2. Plant-to-plant variability in ear traits during the kernel row number formation stage at the canopy level The field study of PPV in SNPR, KRNmax and SNPE was only conducted for one year. A multiple-year field study should be conducted to test the consistency of the results. During the multiple-year field study, the following three questions could be investigated. First, the one-year field study showed that the two parental inbred lines had a 1.5-LT period of high PPV in SNPR than KRNmax since the KRN formation stage and it was not clarified whether the F1 has a similar or a short period of high PPV in SNPR and KRNmax. A longer period of high PPV during the KRN formation stage could be associated with being more subject to environmental stress. Second, the dynamics of CV in SNPR for a F1 hybrid (United 106) was similar across 50,000; 100,000; 150,000 and 200,000 plants ha-1 after the KRN formation stage and the magnitude is similar to the CV of CG60 × CG102 at the corresponding stages in this study (Edmeades and Daynard, 1979b). The PPV in SNPR and KRNmax during the KRN formation stage could be subject to high plant density stress, results in higher PPV in SNPR and KRNmax, and has effects on PPV in GY and harvest index (HI). Third, there should be genotypic difference in these traits among parental inbred lines and the F1 hybrid, which could be investigated for future studies. 183 4.3.3. Relationships among plant growth and leaftip development as well as dry matter partitioning to the ear at the subpopulation level The two-year field results showed that the LT development of the intermediate and D plants was more advanced than the d plants and the possible association of higher PDM at the KRN formation stage for CG102 at 120,000 plants ha-1. Future study could compare CG102 at 120,000 plants ha-1 to 80,000 plants ha-1 as a control from ear initiation (8.5-LT) to post-KRN formation stage (11-LT) and sample at a 0.5-LT interval. A 0.5-LT interval is about 2 d. The following questions could be clarified: (i) When do the advanced LT of the intermediate and D plants start compared to the d plants? (ii) Is there an association of LT and PDM for the intermediate and D plants? 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No. Reference PDM at vegetative stages PDM at reproductive stages Primary EDM Combined factors 1 Vega et al., 2001a NA† NA a + b × EDc Plant density a × EDb 2 Vega et al., 2001b a + b × SDbc + d × (ED × EL)1.25 NA Plant density NA a + b × SV‡ + c × ED2 NA Genotype and plant density a + b × SV a + b × SV + c × ED2 a × e(b × ED) Genotype, row spacing and plant density a + b × SV a + b × SV + c × ED2 a × e(b × ED) Plant density, thinning, shading and growth stage Nitrogen level with statistical testing a + b × SDb2 a × SDbb 3 4 5,6 Borrás and Otegui, 2001 Maddonni and Otegui, 2004 Pagano et al., 2007; Pagano and Maddonni, 2007 7 D’Andrea et al., 2008 a + b × SV a + b × SV + c × ED2 a × EDb 8 Rossini et al., 2011 a × SV for SV ≤ b a + b × SV a × e(b × ED) a × b + c × (SV − b) for SV > b Nitrogen stress, plant density, growth stage and year 9 Boomsma, 2009 NA a + b × SV§ (modified) NA NA 10 Tittonell et al., 2005 NA a + b × PH¶ NA Location a + b × PH + c × ED a + b × PH + c × EL 207 Appendix A.1 Continued No. Reference 11 Echarte et al., 2004 PDM at vegetative stages a + b × SDb Combined factors Plant density PDM at reproductive stages Primary EDM a + b × SDb + c × (ED × EL)d [a + b × (SDb × ED)2 + c × EL + d × SDb]2 (a + b × SDb × ED + c × EL2)2 (a + b × ED + c × ED × EL)2 (a + b × ED + c × ED × EL2)2 (a + b × SDb + c × ED + d × EL)2 [a + b × ED × EL + c ×( ED × EL)2]2 (a + b × ED + c × EL)2 a + b × ED + c × (SDb × EL) + d × (SDb × ED) + f × EL × SDb2 12 Echarte and Tollenaar, 2006 a × SDbb a + b × (SDb × EL)2 + c × ED × SDb2 a × e(b × SDb) a + b × SDb × ED a + b × SDb a + b × SDb2 + c × ED × SDb2 a + b × ED + c × ED × EL + d × (ED × EL)2 + f × EL × ED2 a + b × (ED × EL)2 + c × ED × EL2 a + b × ED + c × ED2 a + b × SDb + c × ED + d × EL × ED2 a + b × (ED × EL)2 a + b × SDb + c × ED2 + d × EL × ED2 a + b × EL2 + c × (ED × EL)2 + d × ED × EL2 a + b × (ED × SDb)2 a + b × (SDb × ED)2 + c × EL × SDb2 Water stress a + b × EL2 + c × (ED × EL)2 a + b × ED × EL + c × (ED × EL)2 a + b × SDb + c × SDb2 + d × (ED × EL)2 + f × ED × EL2 a + b × SDb × ED + c × (SDb × EL)2 a + b × ED × SDb2 † NA, not available; SV = π × (0.5 × SDb)2 × PH; plant height was measured as distance from ground level to the uppermost leaf collar. § SV (modified) = π × (0.5 × SDb)2 × PH ; plant height was measured as the distance from the soil surface to the uppermost extended leaf tip. ¶ PH, plant height was measured as the distance from the ground level to the top of the tassel. No., number; ED, maximum primary ear diameter; EL, ear length; PH, plant height; SDb, maximum width of basal stem diameter; e indicates exponential function; a, b, c, d, f are model parameters. ‡ 208 Appendix B.1. Analysis of variance of effects of genotype, plant density and genotype × plant density on allometric relationship for estimating above-ground plant dry matter (PDM) at different phenological stages in 2007 and 2008. A combination of 40,000 and 120,000 plants ha1 for the two parental inbred lines CG60 and CG102 was analyzed in 2007. In 2008, a combination of 80,000; 120,000, and 160,000 plants ha-1 was analysed during the vegetative phases and a combination of 80,000 and 160,000 plants ha-1 was analyzed during the reproductive stages for CG60, CG102 and their F1 hybrid CG60 × CG102. The allometric relationship was derived from maximum width of basal stem diameter (SDb) in 2007 and from either SDb or the maximum width of stem diameter that is 2 cm above the ground level (SD2) in 2008 and maximum primary ear diameter (ED). Vegetative phases are assessed by leaftip (LT) stage. Year Source of d.f.† 8-LT 12-LT 16-LT Silking 2 wk after variation silking 2007 with SDb 2008 with SDb 2008 with SD2 † ‡ Plant density Genotype 1 0.7536 1 0.1846 0.1427 0.0145 0.0745 0.7903 0.1226 0.0199 0.0096 0.5383 Interaction 1 0.9954 0.0048 0.0745 <.0001 0.1946 Stem volume 1 <.0001 <.0001 <.0001 <.0001 <.0001 ED2 Source of variation d.f. 12-LT 15-LT silking <.0001 2 wk after silking Plant density Genotype Interaction Stem volume 1 1 1 1 0.002 <.0001 <.0001 <.0001 <.0001 0.0204 0.0041 0.1747 <.0001 0.0531 <.0001 <.0001 0.0256 0.0275 <.0001 <.0001 ED2 Source of variation Plant density Genotype Interaction Stem volume 1 NA NA <.0001 d.f. 1 1 1 1 15-LT silking 0.4342 0.0496 0.009 0.0016 <.0001 <.0001 <.0001 <.0001 <.0001 2 wk after silking 0.7577 <.0001 0.0009 <.0001 ED2 1 NA <.0001 <.0001 1 NA‡ NA d.f. degrees of freedom. NA, not applicable; 209 NA <.0001 Appendix B.2. Summary of extrapolation (E), significant bias (B) by using combined plant density models and the residual percentage larger (L) than 5% for above-ground plant dry matter (PDM) estimation and primary ear dry matter (EDM) estimation for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown at different plant densities and sampled at different phenological stages in 2007 and 2008. Vegetative phase are assessed by leaftip (LT) stage. Bold letter indicates the genotype × plant density × phenological stage × year combination that had at least one barren plant. Year Genotype Growth stage 2007 PDM 40,000 EDM 120,000 _______________________ CG60 CG102 F1 8-LT 12-LT 16-LT Silking 2 wk after silking 8-LT 12-LT 16-LT Silking 2 wk after silking 8-LT 12-LT 16-LT Silking 2 wk after silking 2008 E/L E/L 40,000 120,000 -1 _______________________ plants ha L L E E E E/L E E E E E/L E L E E E 80,000 120,000 160,000 80,000 120,000 160,000 _______________________ CG60 CG102 F1 12-LT 15-LT Silking 2 wk after silking 12-LT 15-LT Silking 2 wk after silking 12-LT 15-LT Silking 2 wk after silking plants ha-1 _______________________ E/L E E E L/E E L/E L L L L/B E L/B/E L L E E/L L E L/B 210 E E E 2.0 CG102 at 80,000 plants ha-1 in 2008 -1 CG102 at 120,000 plants ha in 2007 Average plants Barren plants Average barren plants 1.5 1.0 PDM Ratio 0.5 0.0 0 200 400 2.0 600 800 1000 0 200 400 600 800 1000 1200 800 1000 1200 -1 -1 CG102 at 160,000 plants ha in 2008 CG102 at 120,000 plants ha in 2008 1.5 1.0 0.5 0.0 0 200 400 600 800 1000 0 200 400 600 Growing degree days after planting Appendix B.3. Dynamics of above-ground plant dry matter (PDM) ratio between PDM of individual barren plants (i.e., grain yield per plant = 0 g) and average PDM of a plant density from early vegetative stage to physiological maturity for one of the parental inbred lines, CG102, at different plant densities in 2007 and 2008. Each sub-figure represents a plant density × year combination that had at least one barren plant. The first and second arrows indicate the timing of ear initiation and silking, respectively. 211 2.0 -1 CG60 at 120,000 plants ha in 2008 Average plants Barren plants Average barren plants 1.5 1.0 0.5 0.0 2.0 -1 PDM Ratio CG60 at 160,000 plants ha in 2008 1.5 1.0 0.5 0.0 2.0 -1 F1 at 160,000 plants ha in 2008 1.5 1.0 0.5 0.0 0 200 400 600 800 1000 1200 Growing degree days after planting Appendix B.4. Dynamics of above-ground plant dry matter (PDM) ratio between PDM of individual barren plants (i.e., grain yield per plant = 0 g) and average PDM of a plant density from early vegetative stage to physiological maturity for one of the parental inbred lines CG60 and its F1 hybrid CG60 × CG102 at different plant densities in 2008. Each sub-figure represents a genotype × plant density combination that had at least one barren plant. The first and second arrows indicate the timing of ear initiation and silking, respectively. 212 40 -1 800 CG102 at 80,000 plants ha-1 in 2008 CG102 at 120,000 plants ha in 2007 30 750 ASI frequency Barren plants GDDsilking vs. ASI for barren plants GDDsilking vs. ASI for non-barren plants 20 10 700 650 0 600 40 0 4 8 12 16 -4 60 -1 CG102 at 120,000 plants ha in 2008 30 0 4 8 16NS 20NT 24 12 800 -1 CG102 at 160,000 plants ha in 2008 750 50 20 700 GDDsilking Number of individual plants -4 20 10 650 10 0 0 -4 0 4 NT 12 >14 16NS 20 8 40 -1 CG60 at 120,000 plants ha in 2008 24 600 -4 0 -1 CG60 at 160,000 plants ha in 2008 4 8 12 >11 16S NS20NT 24 N & NT -1 F1 at 160,000 plants ha in 2008 850 800 30 750 20 700 10 650 0 600 -4 0 4 8 12 16 NS -4 0 4 8 12 >14 16NS -4 0 4 8 >11 12 16 20 Anthesis to silking intervel (d) Appendix B.5. Frequency distribution of anthesis to silking interval (ASI) in day and the relationship between growing degree days from planting to silking (GDDsilking) (secondary yaxis) and ASI for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 at 213 different plant densities in 2007 and 2008. Each sub-figure represents a genotype × plant density × year combination that had at least one barren plant (i.e., grain yield per plant = 0 g). The grey bars indicate the frequency distribution of the ultimately barren plants. The triangle and round symbols indicate the barren and non-barren plants, respectively. No anther and silk emergence are represented by NT & NS, respectively. 214 30 -1 -1 CG60 at 120,000 plants ha in 2008 25 20 No silk emergence Barren ears Non-barren ears 15 10 CG60 at 120,000 plants ha in 2008 Barren ears Non-barren ears EDMs vs. GDDsilking 5 0 -5 0 5 10 15 560 20 600 640 680 720 760 800 720 760 800 720 760 800 30 -1 -1 CG60 at 160,000 plants ha in 2008 CG60 at 160,000 plants ha in 2008 20 No silk emergence EDMs (g ear-1) 25 15 10 5 0 -5 0 5 10 15 560 20 600 640 680 30 25 -1 -1 F1 at 160,000 plants ha in 2008 F1 at 160,000 plants ha in 2008 20 15 10 5 0 -5 0 5 10 15 560 20 ASI (d) 600 640 680 GDDsilking Appendix B.6. Relationship between ear dry matter at silking (EDMs) and anthesis to silking interval (ASI) and the relationship between EDMs and growing degree days from planting to silking (GDDsilking) for barren and non-barren ears for one of parental inbred lines CG60 and its F1 hybrid CG60 × CG102 at different plant densities in 2008. The values of EDMs for no silk emergence were present in the right-hand side of each panel. Each sub-figure represents a genotype × plant density combination that had at least one barren plant (i.e., grain yield per plant = 0 g). The linear relationship between EDMs and GDDsilking for the F1 at 160,000 plants ha-1 in 215 2008: EDMs = 74.95 – 0.10 × GDDsilking (R2 = 0.69, n = 68, P < 0.0001). 216 Appendix B.7. Mean, minimum and maximum coefficient of determination for plant growth rate during the critical period bracketing silking for individual plants of two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two parental inbred lines and 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Year Genotype Coefficient of determination Mean Minimum Maximum 2007 CG60 0.97 0.79 1.00 CG102 0.97 0.46 1.00 F1 0.94 0.12 1.00 2008 CG60 0.94 0.14 1.00 CG102 0.98 0.67 1.00 F1 0.97 0.64 1.00 217 1.0 CG60 in 2007 CG60 in 2008 CG102 in 2007 CG102 in 2008 F1 in 2007 F1 in 2008 0.8 0.6 0.4 0.2 0.0 Harvest index (g g-1) 1.0 0.8 0.6 0.4 0.2 0.0 1.0 0.8 0.6 0.4 0.2 0.0 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 -1.0 -0.6 -0.2 0.2 0.6 1.0 EGRs/PGRs Appendix B.8. Relationship between harvest index and dry matter partitioning to the ear (i.e., the ratio between ear growth rate after silking (EGRs) and plant growth rate during the critical period bracketing silking (PGRs) for parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 across different plant densities in 2007 and 2008. The PGRs was from 2 wk 218 before silking to 2 wk after silking in both years. The EGRs was from silking to 2 wk after silking in 2007 and from 1 wk after silking to 3 wk after silking in 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for two inbred lines and 40,000 and 160,000 plants ha1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1. 219 CG102 at 120,000 plants ha-1 in 2007 CG102 at 80,000 plants ha-1 in 2008 d d NBd = 4 B NBd = 13 Bd = 3 Bd = 4 CG102 at 120,000 plants ha-1 in 2008 d Intermediate NBd = 9 B Bd = 11 d Intermediate NBd = 4 BD = 2 Bd = 20 CG60 at 120,000 plants ha-1 in 2008 D B BI = 22 BD = 16 CG60 at 160,000 plants ha-1 in 2008 d d NBd = 12 B NBd = 16 BI = 2 CG102 at 160,000 plants ha-1 in 2008 D BI = 10 Intermediate B Bd = 4 Bd = 11 Intermediate B BI = 3 Appendix B.9. Schematic of the relationship between ultimately barren (B) plants (i.e., grain yield per plant = 0 gram) and plant hierarchies for two parental inbred lines CG60 and CG102 at different plant densities in 2007 and 2008. Plant hierarchies are classed according to the aboveground plant dry matter at physiological maturity (PDMPM) as dominated (d) plants (i.e., those plants in the lower 1/3 of PDMPM distribution), intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). The number of plants that belonged to non-barren d (NBd) plants and barren d (Bd) plants are presented for each inbred × plant density × year combination where there was a barren plant. When barren plants were present in the intermediate and D plants, the numbers of barren intermediate (BI) plants and barren D (BD) plants are presented. 220 0.8 -1 CG102 at 120,000 plants ha in 2007 -1 Bd plants 0.6 Bd plants CG102 at 80,000 plants ha in 2008 NBd plants NBd plants NBID plants BID plants NBID plants 0.4 0.2 0.0 0 Harvest index (g g-1) 0.8 40 80 120 160 0 -1 40 80 120 160 200 160 200 -1 CG102 at 120,000 plants ha in 2008 CG102 at 160,000 plants ha in 2008 0.6 0.4 0.2 0.0 0 40 80 0.8 120 160 -1 0 40 80 -1 -1 CG60 at 120,000 plants ha in 2008 120 F1 at 160,000 plants ha in 2008 CG60 at 160,000 plants ha in 2008 0.6 0.4 0.2 0.0 0 40 80 120 160 0 40 80 120 160 0 40 80 120 160 200 Above-ground plant dry matter at physiological maturity (g plant-1) Appendix B.10. The relationship between harvest index (i.e., ratio between grain yield and the above-ground plant dry matter at physiological maturity [PDMPM]) and PDMPM of individual barren plants (i.e., grain yield per plant = 0 g) and individual dominated (d) plants (i.e., plants in 221 the lower 1/3 PDMPM distribution) of a plant hierarchy for two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown at different plant densities in 2007 and 2008. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Each sub-figure represents a genotype × plant density × year combination that had at least one barren plant. Plant hierarchies are classed according to PDMPM as d plants, intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). When barren plants were only present in the d plants, plants within a combination could be grouped into barren d (Bd) plants, non-barren d (NBd) plants and non-barren intermediate and D (NBID) plants, respectively. When barren plants were present in the intermediate and D plants, plants within a combination could be grouped into Bd, NBd, barren intermediate and D (BID) and NBID plants, respectively. 222 150 -1 -1 CG102 at 120,000 plants ha in 2007 CG102 at 80,000 plants ha in 2008 Barren but not d plants Average barren plants Non-barren d plants Average d plants Barren and d plants Average barren plants Non-barren d plants Average d plants Barren and d plants 100 50 0 Estimated PDM (g plant-1) 150 -1 -1 CG102 at 160,000 plants ha in 2008 CG102 at 120,000 plants ha in 2008 100 50 0 150 -1 -1 CG60 at 120,000 plants ha in 2008 CG60 at 160,000 plants ha in 2008 100 50 0 200 400 600 800 1000 1200 400 600 800 1000 1200 Growing degree days after planting Appendix B.11. Dynamics of estimated above-ground plant dry matter (PDM) for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, as well as individual dominated (d) plants (i.e., plants in the lower 1/3 PDM at physiological maturity distribution) and average d plants from early vegetative stage to physiological maturity for two parental inbred lines CG60 and CG102 at different plant densities in 2007 and 2008. The barren plants 223 either totally belonged to d plants, or did not totally belong to d plants. Therefore, the barren plants could be grouped into barren and d plants, barren but not d plants. Each sub-figure represents an inbred × plant density × year combination that had at least one barren plant. The first and second arrow indicates the timing of ear initiation and silking, respectively. 224 20 18 16 CG102 at 120,000 plants ha-1 in 2007 Average barren plants Non-barren d plants Average d plants Barren and d plants -1 CG102 at 80,000 plants ha in 2008 14 12 Barren but not d plants Average barren plants Non-barren d plants Average d plants Barren and d plants 10 8 6 20 -1 -1 CG102 at 120,000 plants ha in 2008 CG102 at 160,000 plants ha in 2008 CG60 at 120,000 plants ha-1 in 2008 CG60 at 160,000 plants ha in 2008 18 Leaftip 16 14 12 10 8 6 20 -1 18 16 14 12 10 8 6 200 400 600 800 1000 1200 400 600 800 1000 1200 Growing degree days after planting Appendix B.12. Dynamics of leaftip stage development for individual barren plants (i.e., grain yield per plant = 0 g), average barren plants, as well as individual dominated (d) plants (i.e., plants in the lower 1/3 above-ground plant dry matter at physiological maturity distribution) and average d plants from early vegetative stage to physiological maturity for two parental inbred lines CG102 and CG60 at different plant densities in 2007 and 2008. The barren plants either 225 totally belonged to d plants, or did not totally belong to d plants. Therefore, the barren plants could be grouped into barren and d plants, barren but not d plants. Each sub-figure represents an inbred × plant density × year combination that had at least one barren plant. The first and second arrow indicates the timing of ear initiation and silking, respectively. 226 -1 GY (g plant-1) EDM (g plant ) 40 30 20 10 -1 -1 CG102 at 120,000 plants ha in 2007 CG102 at 80,000 plants ha in 2008 Initial EDM Growth I Growth II 0 -100 10 20 BID NBd Bd Bd NBd GY GY (g plant-1) EDM (g plant-1) 30 40 30 -1 -1 CG102 at 120,000 plants ha in 2008 CG102 at 160,000 plants ha in 2008 20 10 0 -100 BID Bd NBd 10 BID 20 NBd Bd GY (g plant-1) EDM (g plant-1) 30 50 40 30 20 10 0 -10 -200 -1 -1 CG60 at 160,000 plants ha in 2008 CG60 at 120,000 plants ha in 2008 BID 10 20 30 Bd Bd NBd NBd 40 Appendix B.13. The initial ear dry matter around silking (EDMs) and subsequent growth of individual ultimately barren ears (i.e., grain yield [GY] per plant = 0 g) and ears from the dominated (d) plants (i.e., plants in the lower 1/3 above-ground plant dry matter at physiological maturity distribution [PDMPM]) as well as the corresponding final GY for two parental inbred lines CG60 and CG102 at different plant densities in 2007 and 2008. The subsequent growth 227 included growth I from silking to approximately 2 wk after silking and growth II from approximately 2 wk after silking to physiological maturity. Each sub-figure represents an inbred × plant density × year combination that had at least one barren plant. In the upper panel, the black vertical bars indicate the initial EDMs, the grey and dark grey bars indicate the subsequent growth I and II. In the lower panel, the vertical bars indicate the final GY of the corresponding individual ears. The individual ears that belonged to either barren or d plants could be divided into (i) ears that belonged to barren d (Bd) plants; (ii) ears that belonged to non-barren d (NBd) plants and (iii) ears that belonged to barren intermediate (middle 1/3 of PDMPM) and dominant (D)(upper 1/3 of PDMPM) (BID) plants. The dotted line separates barren and non-barren ears. The dash line separates ears from BID and Bd plants. The initial EDMs of the BID, Bd and NBd plants are sorted by an ascending order, separately. 228 CG102 at 120,000 plants ha-1 in 2007 CG102 at 80,000 plants ha-1 in 2008 d d ASI = 7 – 8 d B ASI = 3 – 8 d ASI = 7 – 11 d ASI = 2 – >14 d d Intermediate and D ASI > 11, NT B B NT & NS, no silk emergence ASI = 8 d, no silk emergence CG60 at 120,000 plants ha-1 in 2008 ASI = 4 d, 8 d, no silk emergence CG60 at 160,000 plants ha-1 in 2008 d d ASI = 0 – 5 d B ASI = -1 - 6 d no silk emergence CG102 at 160,000 plants ha-1 in 2008 Intermediate and D NT no silk emergence, B ASI = 11 d, no silk emergence CG102 at 120,000 plants ha-1 in 2008 d Intermediate ASI > 14 d ASI = 1 – 10 d, no silk emergence ASI = 3 d, 5 d, no silk emergence Intermediate B ASI = 0 d, 1 d, no silk emergence Appendix B.14. Schematic of ear development characteristics for ultimately barren (B) plants (i.e., grain yield per plant = 0 gram) and dominated (d) plants (i.e., those plants in the lower 1/3 of above-ground plant dry matter at physiological maturity [PDMPM] distribution) for two parental inbred lines CG60 and CG102 at different plant densities in 2007 and 2008. Plant hierarchies are classed according to PDMPM as d plants, intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). The ASI, NT, and NT & NS represent anthesis to silking interval (ASI) in day, no anther emergence, no anther and silk emergence, respectively. 229 0.2 -1 -1 CG102 at 80,000 plants ha in 2008 -1 CG102 at 160,000 plants ha in 2008 CG102 at 120,000 plants ha in 2007 Barren and d plants Barren but not d plants Non-barren d plants 0.1 0.0 0.2 -1 EGRs (g plant-1 GDD-1) CG102 at 120,000 plants ha in 2008 0.1 0.0 -0.1 0.3 -1 -1 CG60 at 120,000 plants ha in 2008 CG60 at 160,000 plants ha in 2008 0.2 0.1 0.0 -0.1 -0.2 0.0 0.1 0.2 0.3 0.1 -1 0.2 0.3 -1 PGRs (g plant GDD ) Appendix B.15. Relationships between estimated ear growth rate during the period bracketing silking (EGRs) expressed as gram per plant per growing degree day (g plant-1 GDD-1) and estimated plant growth rate during the critical period bracketing silking (PGRs) in g plant-1 GDD1 of individual barren plants (i.e., grain yield per plant = 0 g) and individual dominated (d) plants (i.e., plants in the lower 1/3 above-ground plant dry matter at physiological maturity distribution) 230 for two parental inbred lines CG60 and CG102 at different plant densities in 2007 and 2008. The barren plants either totally belonged to the d plants, or did not totally belong to the d plants. Therefore, the barren plants could be grouped into barren d plants, barren but not d plants. Each sub-figure represents an inbred × plant density × year combination that had at least one barren plant. 231 Appendix B.16. Summary of similarities among different sub-populations in above-ground plant dry matter (PDM) and ear dry matter (EDM) throughout development, plant growth rate during the critical period bracketing silking (PGRs), ear growth rate during the period bracketing silking (EGRs), and partitioning index (i.e., EGRs/PGRs) for two parental inbred lines CG60 and CG102 grown at different plant densities in 2007 and 2008. Presented inbred × plant density × year combinations had at least one barren plant (i.e., grain yield per plant = 0 g). Plant hierarchies within a combination are viewed according to PDM at physiological maturity (PDMPM) as d plants (i.e., plants in the lower 1/3 PDMPM distribution), intermediate plants (i.e., those plants in the middle 1/3 of the PDMPM distribution) and dominant (D) plants (i.e., those plants in the upper 1/3 of the PDMPM distribution). When assessing both barren plants and dominated (d) plants, the plants could be barren d (Bd) plants, non-barren d (NBd) plants when barren plants were only present in the d plants. When barren plants were present in the intermediate and D plants, barren plants and d plants could be grouped into Bd plants, non-barren d (NBd) plants, barren intermediate and D (BID) plants, respectively. The six PDM sampling stages in 2007 were 8-leaftip (LT) stage (PDM1), 12-LT stage (PDM2), 14-LT stage (PDM3), silking (PDMs), 2 wk after silking (PDMs+2) and PM (PDMPM), respectively. The five PDM sampling stages in 2008 were 11-LT stage (PDM2), 15-LT stage (PDM3), silking (PDMs), 2 wk after silking (PDMs+2) and PM (PDMPM), respectively. The three EDM sampling stages in 2007 and 2008 were silking (EDMs), 2 wk after silking (EDMs+2) and PM (EDMPM), respectively. The similarity in PDM and EDM between two individual plants is defined as less than or equal to 0.3 g and 0.15 g differences, respectively. The similarity in PGRs, EGRs and partitioning index between two individual plants is defined as less than or equal to 0.01 gram per plant per growing degree day (g plant-1 GDD-1), 0.005 g plant-1 GDD-1 and 0.01 differences, respectively. The similarity is marked with symbol. Year Inbred Plant Subpopulation PDM1 PDM2 PDM3 PDMs PDMs+2 PDMPM EDMs EDMs+2 EDMPM PGRs, EGRs and density partitioning index (plants ha-1) 2007 CG102 120,000 Bd NBd 2008 CG60 120,000 Bd NBd CG60 160,000 Bd BID BID NBd NBd Bd CG102 80,000 Bd NBd BID BID NBd Bd NBd BID BID Bd BID BID NBd Bd NBd NBd Bd Bd 160,000 120,000 CG102 CG102 232 30 CG102 in 2007 CG102 in 2008 Post-silking ligule height frequency Frequency of barren plants Number of individual plants 20 10 0 110 125 140 155 170 185 200 215 230 245 260 103 121 139 157 175 193 211 229 247 265 30 CG60 in 2008 F1 in 2008 20 10 0 114 130 146 162 178 194 210 226 242 258 110 125 140 155 170 185 200 215 230 245 260 Maximum plant height (cm) Appendix B.17. Frequency distributions of the maximum plant height in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.04, skewness = -0.22, kurtosis = -0.91, coefficient of variation (CV) = 9%, and mean (M) = 141 cm. For CG60 in 2008 (n = 154): Pr < W = 0.02, skewness = -0.56, kurtosis = 0.49, CV = 7% and M = 157 cm. For CG102 in 2008 (n = 155): Pr < W = 0.87, skewness = 0.03, kurtosis = -0.08, CV = 8%, and M = 173 cm. For the F1 in 2008 (n = 153): Pr < W = 0.08, skewness = 0.42, kurtosis = -0.03, CV = 5%, and M = 232 cm. 233 30 CG102 in 2008 CG102 in 2007 Post-silking leaf area per plant Frequency of barren plants Number of individual plants 20 10 0 21 00 0 27 0 33 00 00 500 100 700 300 700 300 900 500 100 700 300 900 500 39 2 4 1 2 5 3 5 6 4 4 5 5 6 30 F1 in 2008 CG60 in 2008 20 10 0 174 0 0 270 0 366 462 0 0 558 0 166 0 246 0 326 406 0 486 0 566 0 0 646 Post-silking leaf area (cm2) Appendix B.18. Frequency distributions of the post-silking leaf area in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.69, skewness = 0.14, kurtosis = -0.37, coefficient of variation (CV) = 16%, and mean (M) = 3235 cm2. For CG60 in 2008 (n = 154): Pr < W = 0.87, skewness = -0.05, kurtosis = 0.16, CV = 9% and M = 3669 cm2. For CG102 in 2008 (n = 155): Pr < W = 0.30, skewness = -0.30, kurtosis = 0.15, CV = 15%, and M = 3021 cm2. For the F1 in 2008 (n = 153): Pr < W = 0.29, skewness = -0.15, kurtosis = 0.06, CV = 12%, and M = 4723 cm2. 234 30 CG102 in 2008 CG102 in 2007 Largest leaf area frequency Frequency of barren plants Number of individual plants 20 10 0 300 360 420 480 540 600 660 720 780 30 CG60 in 2008 330 394 458 522 586 650 714 778 F1 in 2008 20 10 0 310 370 430 490 550 610 670 730 790 315 365 415 465 515 565 615 665 715 765 815 Largest leaf area (cm2) Appendix B.19. Frequency distributions of the largest leaf area in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.11, skewness = -0.43, kurtosis = -0.45, coefficient of variation (CV) = 11%, and mean (M) = 496 cm2. For CG60 in 2008 (n = 154): Pr < W = 0.49, skewness = -0.21, kurtosis = -0.06, CV = 10% and M = 445 cm2. For CG102 in 2008 (n = 155): Pr < W = 0.00, skewness = -0.71, kurtosis = 0.45, CV = 10%, and M = 489 cm2. For the F1 in 2008 (n = 153): Pr < W = 0.70, skewness = 0.16, kurtosis = -0.20, CV = 12%, and M = 603 cm2. 235 40 CG102 in 2007 CG102 in 2008 Leaf length/leaf width frequency Frequency of barren plants 30 Number of individual plants 20 10 0 4.3 5.5 6.7 7.9 9.1 10.3 11.5 12.7 13.9 4.5 40 6.0 7.5 9.0 10.5 12.0 13.5 F1 in 2008 CG60 in 2008 30 20 10 0 5.0 6.2 7.4 8.6 9.8 11.0 12.2 13.4 4.2 5.3 6.5 7.6 8.8 9.9 11.1 12.2 13.4 Leaf length/leaf width Appendix B.20. Frequency distributions of the ratio between leaf length and maximum leaf width (leaf length/leaf width) of the largest leaf area in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.02, skewness = -0.25, kurtosis = -0.98, coefficient of variation (CV) = 14%, and mean (M) = 7.85. For CG60 in 2008 (n = 154): Pr < W = 0.07, skewness = 0.23, kurtosis = 1.42, CV = 9% and M = 7.39. For CG102 in 2008 (n = 155): Pr < W = 0.04, skewness = 0.41, kurtosis = -0.20, CV = 12%, and M = 10.26. For the F1 in 2008 (n = 153): Pr < W = 0.06, skewness = 0.49, kurtosis = 0.46, CV = 8%, and M = 9.26. 236 50 CG102 in 2007 CG102 in 2008 Stem elongation rate frequency Frequency of barren plants 40 Number of individual plants 30 20 10 0 0.24 0.30 0.36 0.42 0.48 0.54 0.60 0.66 0.72 0.78 50 CG60 in 2008 0.28 0.36 0.44 0.52 0.60 0.68 0.76 F1 in 2008 40 30 20 10 0 0.25 0.35 0.46 0.56 0.67 0.77 0.31 0.39 0.47 0.55 0.63 0.71 0.79 Stem elongation rate (cm GDD-1) Appendix B.21. Frequency distributions of stem elongation rate (in cm per growing degree day [GDD]) in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = 0.02, skewness = -0.62, kurtosis = -0.05, coefficient of variation (CV) = 11%, and M = 0.44 cm GDD-1. For CG60 in 2008 (n = 154): Pr < W = <0.0001, skewness = -0.89, kurtosis = 1.65, CV = 8% and mean (M) = 0.38 cm GDD-1. For CG102 in 2008 (n = 155): Pr < W = <0.0001, skewness = 1.16, kurtosis = 0.92, CV = 16%, and M = 0.41 cm GDD-1. For the F1 in 2008 (n = 153): Pr < W = <0.0001, skewness = 1.37, kurtosis = 1.80, CV = 10%, and M = 0.57 cm GDD-1. 237 80 60 CG102 in 2007 CG102 in 2008 Ear diameter extension rate frequency Frequency of barren plants Number of individual plants 40 20 0 -28 80 -20 -12 -4 4 12 20 28 CG60 in 2008 -30 -25 -20 -15 -10 -5 0 5 10 15 20 25 30 F1 in 2008 60 40 20 0 -30 -23 -16 -9 -2 5 12 19 26 -30 -24 -18 -12 -6 0 6 12 18 24 30 Ear diameter expansion rate (mm × 10-2 GDD-1) Appendix B.22. Frequency distributions of ear diameter expansion rate (in mm × 10-2 per growing degree day [GDD]) in two parental inbred lines CG60, CG102 and their F1 hybrid CG60 × CG102 grown across different plant densities in 2007 and 2008. The plant densities in 2007 were 40,000 and 120,000 plants ha-1 for the two inbred lines, 40,000 and 160,000 plants ha-1 for the F1 hybrid. The plant densities in 2008 were 80,000; 120,000 and 160,000 plants ha-1 for the three genotypes. Within each genotype, plants had similar initial plant size at the 8-leaftip (LT) stage in 2007 and 4-LT stage in 2008. Dark grey bars indicate the position of ultimately barren plants (i.e., grain yield per plant = 0 g). In terms of frequency distribution, for CG102 in 2007 (n = 70): Shapiro-Wilk normality test (Pr < W) = <0.0001, skewness = 1.26, kurtosis kurtosis = 0.88, coefficient of variation (CV) = 35%, and mean (M) = 9.61 mm × 10-2 GDD-1. For CG60 in 2008 (n = 154): Pr < W = <0.0001, skewness = -2.01, kurtosis = 10.45, CV = 97% and M = 6.07 mm × 10-2 GDD-1. For CG102 in 2008 (n = 155): Pr < W = <0.0001, skewness = -0.57, kurtosis = 4.34, CV = 71%, and M = 5.81 mm × 10-2 GDD-1. For the F1 in 2008 (n = 153): Pr < W = <0.0001, skewness = 1.10, kurtosis = 4.17, CV = 43%, and M = 7.13 mm × 10-2 GDD-1. 238
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