Annual Reviews www.annualreviews.org/aronline Annu.R ev. P hytopathol.1993.31:127-50 Copyright©1993by AnnualReviewsInc. All rights reserved Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGAL VEGETATIVE COMPATIBILITY John F. Leslie Department of Plant Pathology,Throckmorton Hall, KansasState University, Manhattan, Kansas66506-5502 KEYWORDS:ascomycetes, fungal genetics, heterokar~ns, parasexual cycle INTRODUCTION Heterokaryonformation betweendifferent fungal individuals is an important componentof manyfungal life cycles and mayserve as the first step in the parasexual cycle and the transmission of hypovirulent factors such as dsRNAs. Heterokaryosis also is a means by which normally haploid fungi mayenjoy the benefits of functional diploidy, such as complementation or heterosis. In plant pathogenic fungi, the entity that emergesfollowing heterokaryosis may differ from its constituents in aggressiveness or host range; someof these aspects have been reviewedin previous volumesin this series (9, 28, 45, 62, 72, 112, 114, 117, 143, 154, 158, 160). In most heterothallic fungi, the formation of a heterokaryonbetweentwo genetically different haploid strains is an essential part of the life cycle. Suchheterokaryonsmaybe quite stable and persist vegetatively for an indefinite period of time or maylast only long enoughfor the componenthaploid nuclei to fuse and then immediatelyundergo meiosis. In manyfungi, sexual and vegetative heterokaryons are quite distinct from one another. Strains capable of forminga successful sexual heterokaryonmay be unable to form a successful vegetative heterokaryonand vice versa. Strains that are capable of forming these types of heterokaryons are referred to as "sexually" or "vegetatively" compatible, respectively. Strains that are vegetatively compatible with one another are frequently described as membersof the same vegetative compatibility group, or VCG.Sexual compatibility is usually governed by one or more mating-type loci that mayhave two or more alleles (58, 62). Vegetative compatibility maybe governedby the mating-type loci in somefungi, e.g. manybasidiomycetes, but there also are examplesin which a separate set of genes controls the formation and stability of these vegetative heterokaryons. 127 0066-4286/93/0901-0127$02.00 Annual Reviews www.annualreviews.org/aronline 128 LESLIE Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. Genetic systems governing vegetative compatibility have been reported in many different fungi (for examples, see Table 1). The formal interactions these systems vary greatly. Conceptually, the simplest systems are those in which strains that are identical at a particular set of loci are capable of forming a stable heterokaryon, while those that differ at any of these loci are incapable of forming a vegetatively stable heterokaryon. This type of interaction is usually referred to as allelic compatibility. Nonallelic interactions also may occur in which alleles at one locus interact with alleles at a second locus to block the formation of a stable heterokaryon. One of the best-studied examples of nonallelic interaction occurs in Podospora anserina (Table 1). An even more complex nonallelic interaction has been described in Heterobasidion annosum by Chase & Ullrich (26, 27). The molecular bases for all of these interactions are all but unknown, and are probably quite varied. To the extent that vic (for vegetative incompatibility) genes represent means for discriminating self from nonself, they represent a recognition mechanism that is carried throughout much of the biological world, e.g. Thompson & Kirch (153). Fungi have served as excellent model systems for the study of many phenomena in higher organisms (122), but it is not evident whether fungal recognition systems resemble those of other eukaryotes. Table 1 Literature citations to somefungal systems in which vegetative compatibility has been reported Organism Citation(s) Aspergillus spp. Ceratocystis spp. Cochliobolus heterostrophus Colletotrichum spp. Cryphonectria parasitica Cryptostroma spp. Diaporthe phaseolorum Fusariurn spp. 7, 22, 24, 38, 40-43, 77, 78, 116 14, 52 96 15 3-5, 92, 108, 144 155 133 2, 10, 11, 29, 31, 33, 39, 46, 53, 55, 64, 65, 76, 80-82, 100, 101, 130, 137139, 141, 142, 149 69, 145 163 1 134 159 44, 49, 59-62, 71, 98, 106, 107, 120, 121, 125, 127, 128, 161, 162 24 8, 56, 93, 156 89, 90 111 151 79, 113, 135, 140, 157 Hypoxylon spp. Leptographiurn wagneri Leucostoma persoonii Leucocytospora kunzei Morchella esculenta Neurospora spp. Penicillium spp. Podospora anserina Sclerotinia sclerotiorum Septoria nodorum Trichoderma spp. Verticillium spp. Annual Reviews www.annualreviews.org/aronline FUNGALVEGETATIVECOMPATIBILITY 129 Myobjective in this review is to describe our current understandingof the allelic vegetative compatibility reactions in four different ascomycetefungi, Aspergillus, Cryphonectria, Fusarium, and Neurospora. These fungi have served as modelsfor the basic study of the genetic mechanismscontrolling vegetative compatibility, and they can be used to illustrate someof the ways vegetative compatibility maybe used in the study of fungal populations. Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. GENERAL PROPERTIES Vegetativecompatibilitysystemsgenerally act to restrict the transfer of nuclear and cytoplasmic elements during growth. In each of these four fungi, hyphal fusion usually occurs normally, even betweenstrains that carry vegetatively incompatible nuclei. However,after an incompatible fusion occurs, a killing reaction follows that leads to death of the heterokaryotic cell. The incompatibility systems in these fungi are all allelic in nature, and field populations usually are quite polymorphic. Throughoutthis review I use the symbol vic to refer to loci that governvegetative compatibility. 1 use the term vegetative compatibility group(VCG)to refer to strains that can form a stable vegetative heterokaryon, implying identity of alleles at every vic locus. This is the terminology that is usually employedwith Fusariumspp., but is somewhat different from that used with some other fungi. I have noted equivalences where appropriate. Most studies of vegetative compatibility have focused on the fusion (anastomosis) of hyphaerather than the fusion of protoplasts or spheroplasts. The workdone with fused protoplasts is quite interesting, however,since the heterokaryons formedfollowing protoplast fusion appear to be significantly different from those formedfollowinghyphal anastomosis(2, 151). The killing of heterokaryotic cells composedof incompatible nuclei that occurs following hyphal anastomosis may not occur in some instances following protoplast fusion (40, 57, 105, 118). These data may be interpreted to mean that cell-membrane components or materials in the space between the cell membraneand the cell wall are responsible for at least someof the killing reactions. Suchan interpretation could also be used to explain the survival of heterozygous partial diploids in Neurospora(see below) that carry both vic alleles at the samelocus. Neurospora Vegetativecompatibility has beenstudied most intensively in the heterothallic Neurosporacrassa. Most of this work has focused on the number, location, and phenomenologyof the different loci and alleles. The loci governing vegetative compatibility are usually termedhet loci. In Neurosporavegetative compatibility has been studied by examiningheterokaryons for prototrophic growth (59) and barrage formation (67, 68), by microscopic examination heterokaryoticcells (61), and throughthe formationof partially disomicstrains Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 130 LESLIE that are heterozygous at one or morevic loci (106, 120). Ten different vic loci have been identified to date and these have been mappedto five of the seven chromosomes; others are presumedto exist but have yet to be identified. Preliminary evidence is available for multiple alleles at two of these loci, het-C (D. D. Perkins, personal communication)and her-8 (98). All of the vic loci in Neurosporahave been identified using the partial disomic method(see below), but only somehave been tested for their ability to block heterokaryon formation per se. Heterozygosityat the het-i locus (128) does not lead to the cytoplasmickilling reaction, but can lead to the loss of one of the components through unbalanced growthor nuclear division. In a limited study of strains from three sites in Louisiana, Mylyk(107) showedthat no two of fifteen strains were identical to one another and that heteromorphism for at least five genes occurred amongthe five isolates examinedfrom one site. The mating-type locus can act as a vegetative compatibility locus in N. crassa, but the incompatibility reaction associated with mating type can be suppressedby a recessive allele at the unlinkedtol locus (109). The tol locus is not knownto suppress the heterozygous reaction at either het-C or her-E, but whether it affects other vic genes is unknown(121). Differences vegetative compatibility loci mayenhance sexual fertility (49). In the pseudohomothallic N. tetrasperma, which normally grows as a heterokaryon containing nuclei of opposite matingtype, a recessive allele is present at the tol locus (73). The molecular mechanism(s) by which any of these loci function is not known.Wilsonet al (I 62) have shownthrough microinjection studies that the agent responsible for the killing reaction is labile to proteases but not to RNAse or DNAse.These studies were extended by Williams & Wilson (161) who found evidence for the involvement of an RNA-associatedcomponentto the killing reaction, and showedthat the molecular weight of the active complex was approximately 200,000 daltons. They also suggested, based on killing kinetics and the geometryof the microinjection process, that saturation of a receptor is a prerequisite for killing and that the cell membranes (and more specifically damageto them) was involvedin the killing reaction. Considerable effort is now being devoted to the cloning of the genes that govern the vegetative compatibility response in N. crassa, and manyof these questions should be more easily approached once that has been accomplished. Aspergillus Numerous Aspergillus species have been examined for the presence of vegetative compatibility. Since formation of a stable vegetative diploid is a prerequisite for the parasexual cycle, vegetative compatibility has long been an importanttopic relative to this genus. Theworkin Aspergillus is relatively well-balanced betweenfundamentalstudies of the vic loci and implications of the workfor population studies. At least eight vic loci (termed het loci) are Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGALVEGETATIVE COMPATIBILITY 131 knownin the homothallic A. nidulans (38), and multiple alleles are known be present at at least two loci (37). Vegetative compatibility maybe scored directly or through the use of a chromosome assay systemthat uses protoplast fusion to form an appropriate heterozygous diploid and then uses pairs of haploid segregants to mapthe heterozygous vic loci (4143). Studies of VCGs (termed h-c groups) has revealed that these groups are widely dispersed in the United Kingdom(38), and that genetic diversity is greater between groups than within groups (17-19). Antibiotic production mayalso be restricted particular VCGs(38). Cryphonectria Vegetative compatibility workin this genus has been limited to Cryphonectria parasitica. Interest has focused on the role of vegetative compatibility in the transfer of double-stranded RNA (dsRNA)from one strain to another. Strains carrying this dsRNAare hypovirulent and do not cause severe chestnut blight (5, 92, 112). Natural spread of this dsRNA could lead to sustainable biological control of this disease. At least 5-7 loci (termedv-c loci) havebeenidentified in C. parasitica and strains that differ only at a single locus are known(4). Mutantsat vic loci have been recovered followingmutagenesiswith ultraviolet light in a laboratory context (144). Vegetative compatibility in C. parasitica is usually scored by barrage formation between strains that are not compatible with one another (3). electron microscopestudies, fusion cells betweenvegetatively incompatible hyphae have been shownto degenerate in a mannersimilar to that observed in N. crassa (108). DsRNAs can be transferred between strains that are different VCGs(5, 92). As the numberof heterozygousvic loci increases the efficiency of transfer of the dsRNAdecreases. The dsRNAparticles are transferred moreefficiently than are mitochondria(63). Fusarium Heterokaryosis, barrages, and perhaps complementation or other types of mycelial interactions have been recognizedin the genus Fusariumfor at least 100 years (104, 115, 152). With the work of Puhalla (139) and Puhalla Spieth (141-142), these observations of hyphal interactions were mergedwith genetic theory developed for modelgenera Aspergillus and Neurospora.This merger has been used primarily in population studies of the imperfect F. oxysporum(see below) in an attempt to develop new diagnostic techniques. A few basic studies have been done, however,and there is evidence for genetic segregation of vic loci in both the heterothallic F. moniliforme(perfect stage Gibberella fujikuroi) (141) and the homothallicF. graminearum (perfect stage Gibberella zeae) (12). In F. moniliformeone vic locus (vicl) has been mapped, and there are strains that are knownto differ at only this locus. Basedon the segregation of different VCGtypes from a cross, at least ten vic loci are Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 132 LESLIE expected in F. moniliforme. Mutantswith a novel phenotype,i.e. inability to fuse properly to form a heterokaryon, have been described and termed heterokaryonself-incompatible (32, 74). Researchers characterizing Fusarium populations with VCGsshould be aware of the existence of these mutant strains and the difficulties that they could pose for the interpretation of population data (see belowfor moredetail on this mutantclass). In general, population studies using VCGshave been quite extensive in this genus, but muchremains to be done to understand the basic biology of the vic loci that are responsible for the VCGphenotypes. TECHNIQUES The methodsused to identify vic loci are important. Three basic types of "techniques have been used: direct assessment of heterokaryon formation (usually by complementationof recessive auxotrophic or pigmentation markers); direct assessment of inability to form a heterokaryon (usually through barrage formation); and, finally, throughgrowthcharacteristics of strains that are partial diploids and are heterozygousat one or more vic loci. I discuss each of these basic techniques, consider a complicating phenomenon (heterokaryonself-incompatibility) that can lead to misdiagnosisof vegetative compatibility, and describe potential mutagenesisand cloning strategies for these loci. Direct Heterokaryon Formation Direct tests of heterokaryonformation usually involve the establishment of a stable prototrophic heterokaryonunder conditions in whichneither of the two auxotrophiccomponents could survive. Thesetests are a direct test of vegetative (heterokaryon) compatibility. In principle, any genetic markers whosedefect can be remedied by complementation can be used to detect heterokaryon formation. In practice, auxotrophor pigmentationmarkersare usually preferred because of the ease of distinguishing the heterokaryotic colony from its components. The mutants used may originate from any source. If forcing markersmust be introduced by a typical mutant hunt procedure, then the labor required will preclude any extensive screening of populations, and simpler methodsmust be applied. The introduction of nitrate nonutilizing (nit) mutants has provided such a solution. Whena heterokaryon is forced between auxotrophicstrains in the sameVCG,then a prototrophic heterokaryonresults. If the strains are in different VCGs,then no prototrophic growthoccurs. Puhalla (139, 142) adapted to Fusariuma technique developed by Cove (35, 36) for Aspergillus. Spontaneous nit mutants can be recovered as chlorate-resistant sectors at a sufficiently high frequencythat they can be used for population studies in Fusariurnand Aspergillus. In Fusariutn the technique has been well-characterized (11, 31, 32, 46, 50, 84, 85, 87, 99). Many the tests can be done on 24-well (86) or even 96-well (C. Campbell&J. Annual Reviews www.annualreviews.org/aronline FUNGALVEGETATIVECOMPATIBILITY 133 Leslie, unpublished)microtiter plates, and tests of hundredsto thousands of isolates for diagnostic and/or tracking purposes are nowfeasible (7, 83). Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. Barrage The barrage phenomenonis conceptually the opposite of a prototrophic vegetatively compatible heterokaryon. Barrages occur between vegetatively incompatible strains in manyfungi, including Podospora(56), Neurospora (68), and Cryphonectria, but the ease with which they can be identified depends upon environmental conditions. A barrage mayresult when hyphae of incompatible strains grow into each other and interact in an antagonistic manner.The barrage region occurs wherethe two colonies contact one another and may be sharply delimited. The barrage phenomenonrequires hyphal fusion, and in the barrage region numerouslethal hyphal fusions will occur. The barrage phenomenonforms the main basis for scoring vegetative compatibility and assigning strains to VCGsin C. parasitica (3). In parasitica, whenstrains in different VCGs are paired on a plate they will grow until they meet and then form a barrage. The barrage consists of a central region that contains dead or dying cells of the type described by Newhouse & MacDonald(108). A dark layer of pigment mayalso be deposited in this region. Oneither side of this central region the myceliaforma higher, thicker layer of growth that maybe accompaniedby the formation of perithecia. Vegetatively compatible strains do not interact in this manner, but instead they simply grow into each other without altering their morphology. Partial Diploids Partial chromosome duplications in Neurosporaare structural duplications of segmentsof the fungal genome.If the duplicated region carries a vic locus, then it is possible to construct strains that are heterozygousfor particular loci. Unlike heterokaryons, these heterozygous partial diploids enclose both vic alleles in the samenucleus and ensure that a 1:1 ratio is maintained.The major advantageoffered by this technique is that it allows one or a few vic loci to be studied without havingto construct strains that differ at only one vic locus. If these duplications breakdowninto a euploidconfiguration, then it is possible to obtain strains that differ only in the duplicated region. This approachhas been used to obtain strains that differ only at het-5 or het-8 (107). In Neurospora segmental chromosomeduplications can be generated in crosses between certain types of chromosomerearrangements and normal sequence strains (123). Duplication strains that are heterozygous for contained vic gene are phenotypically quite aberrant with abnormalgrowth, pigmentation, and morphology(98,106, 110, 120). The pigmentation reaction may be intensified by supplementing the mediumwith phenylalanine and tyrosine (119). Amongthe vic loci in N. crassa, all but het-i have been examinedusing this technique. The strength of the incompatibility reaction Annual Reviews www.annualreviews.org/aronline 134 LESLIE amongthe progeny can vary with the strains used in the cross (98, 106). Whetherthis difference in reaction intensity is attributable to the individual alleles at the locus or to the genetic backgroundof the individuals involved in the cross has not been determined. An updated list of strains carrying rearrangementsthat can be used to identify the alleles at different vic loci in N. crassa has recently been published (124). Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. Mutagenesis and Cloning Strategies Mutagenesis and cloning strategies carry with them unspoken assumptions regarding the modeof action of vic genes. These assumptionswill affect the methodsthat are chosen to select for mutants or transformants. For example, if alleles are not nearly isosequential, then it probablywill not be possible to convert one discriminatory allele into another. Similarly, the effect of null mutations are generally unknown: should such mutants be expected to be compatible or incompatible with all other strains? Finally, are vic genes essential? If they encode an essential componentof the cell membrane,for example, then it maynot be possible to completely inactivate these genes unless conditional mutants are made. The cloning of the S/s alleles in P. anserina suggests that the alleles at at least someof the vic loci are nearly isosequential and that neutral alleles exist that are compatiblewith both of the discriminatoryalleles (156). Mutantsat vic loci have been successfully selected in C. parasitica and F. oxysporum. In both cases some of the findings were unexpccted and need to be repeated and confirmed. In C. parasitica, Rizwana& Powell (144) were able to induce changes from one VCGtype to another using ultraviolet light; the mutants they recovered were unstable, and continued to change their VCG type as they grew. Rizwana & Powell (144) suggested that this observed instability could form the basis for muchof the variability observed with respect to VCG in field populations of C. parasitica. In F. oxysporumf. sp. lycopersici, Kroon & Elgersma (91) obtained simultaneous change of both pathogenic race and VCG.They suggested that one (or perhaps more) of the vic loci might be involvedin the recognition of the host plant, and that changes in vic genotypecould also result in changesin pathogenicity. Elias &Schneider (53) found that this same pathogen group could be subdivided into numerous VCGs, and that members of the same VCGcould belong to different pathogenic races. In this context, the findings of Kroon&Elgersmaneed to be repeated and carefully checked to control unrelated problems, such as accidental cross-contamination, before the hypothesis that vic loci themselves can affect pathogenicity is accepted. To date, the cloning of vic genes from any of these fungi has not been reported, but one vic gene (S/s) in the allelic series in P. anserina has been cloned (156). Several groups are attempting to clone vic loci in other fungi, and future reviews of this area will undoubtedly contain a great deal of Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGALVEGETATIVECOMPATIBILITY 135 information on this aspect of vic gene biology. Direct selection for transformants is possible in systems where barrages can be observed if a successful transformation event results in a changefrom one VCG to another. Transformants maythen be identified by the barrage they form with their neighbors on the transformation plate. A more difficult problem maybe to identify transformants if they are heterozygous for a vic locus and are not growingas well as their counterparts with only a single copy of a vic allele. To the extent that these strains resemblethe partial diploids described above, they will be at a selective disadvantage on the transformation plates. With single clones it maybe possible to transform strains that differ at a vic locus, e.g. vicx a and vicxb. If DNAcontaining the vicxa allele is used for transformation, then a vicxa recipient strain should be transformedat a normal rate. If the recipient strain carries the vicxb allele, then the heterozygous transformants should grow poorly, or not at all. It should be possible to determine if an individual DNAclone carries a particular vicx allele by comparingthe relative efficiency with which the two recipients are transformed. This identification technique is not immediately amenable to sib-selection or to transformation with manydifferent cloned fragments, since the desired transformants may be dead, weak, or morphologically abnormal, depending upon the strength of the resulting incompatibility interaction. The greater the numberof DNA types put into the transformation, the more difficult it will be to discern if there is a significant difference betweenthe vicx a and the vicx~’ recipients. Direct selection of such poorly growing strains, which would allow the use of sib-selection and related techniques, might be possible if the pigmentation phenotypethat results in somestrains carrying partial duplications (106, 110, 120) can be adapted to transformation protocols. HeterokaryonSelf-Incompatibility (HSI) In the four genera discussed in this review, incompatiblestrains form to fuse a heterokaryon,and it is only after cell fusion that the vegetative incompatibility reaction occurs. Strains carrying mutationsthat prevent themfrom fusing to form heterokaryons, even with themselves, have been identified in field populations of F. oxysporurn (10, 74, 76), F. moniliforme (21, 32, 85), and F. subglutinans (30). These strains can lead to an incorrect diagnosis vegetative incompatibility since they will usually not form heterokaryonswith any other strains. It is important to identify such strains to prevent the overestimation of the numberof VCGswithin a population. In F. moniliforme (32), naturally occurring HSI (heterokaryon self-incompatible) mutant strains cultured under laboratory conditions form 2-16% of the hyphal fusions formedby heterokaryon self-compatible (HSC)strains, which can form heterokaryons normally. Hyphal branching per se does not appear to be affected. Meiotic progeny from a cross betweenan HSCand HSI Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 136 LESLIE strain segregate 1:1 for the HSIphenotype,suggesting that this trait is under the control of a single nuclear gene (hsil). Crosses betweentwo HSIstrains cannot be madesince the HSIstrains examinedto date are all female sterile. Since heterokaryonsof F. moniliformeare limited to the cells that participated in the fusion event, i.e. the nuclei do not migrate following heterokaryon formation (16, 136), for an observable prototrophic heterokaryonto be formed, there must be a sufficient numberof fusions so that the heterokaryotic cells can cross-feed their neighbors. SomeHSIstrains can form weakheterokaryons with HSCstrains (21, 76), however, so the HS1strains appear to have only a diminishedcapacity to makea heterokaryonrather than a completeinability. The 1-2%frequency at which HSI isolates are recovered from field populations, and their widespreadgeographic distribution, argues that mutations to self-incompatibility are not uncommon and that they are not subject to intense selection pressure. Thesefindings, combinedwith the limited reproduction of the heterokaryotic cells, suggest that heterokaryonformation, at least under field conditions, is not of crucial importancein these Fusariumspp. POPULATIONS Studies of populations using VCGsas a means to measure diversity have becomewidespread in recent years. The multiple-locus base for the VCG subdivisions meansthat with one test the relationship at multiple loci is being assessed. The resulting subdivisionspermit us to determineidentities relatively quickly (e.g. 25, 47), but VCGsare not useful in determining the degree relatedness if the two isolates are not identical. In Fusariummuchof the work with VCGsis the result of two advances: The developmentof nit mutants as forcing markersfor heterokaryontests, and the insightful proposal by Puhalla (139) that pathogenic subgroupsmight be limited to one or a few VCGs.Work with both biometric (17, 19) and molecular markers (10, 66, 76) has shown that isolates within a VCG tend to be moresimilar than isolates in different VCGs.There are exceptions tc~ this rule, however,and although the assumption that strains within a VCGare clonally related appears to be generally true, it should be madewith caution. Isolates within a VCGare potentially capable of exchanging genetic information via a parasexual process. The importanceof this ability depends upon the structure of the population and the numberof partners with which a strain could exchange information. Correlations between VCGsand other characters such as pathogenicity could lead to useful diagnostics (6, 10, 34, 76, 103), and the VCGsthemselves are useful tools for tracking isolates that are found or that have been released into the population (7, 83). VCGsmay also be useful as a biological containment for cloned genes, especially if coupled with traits such as heterokaryonself-incompatibility (see above) that limit heterokaryonformation and sexual fertility. Annual Reviews www.annualreviews.org/aronline FUNGALVEGETATIVECOMPATIBILITY Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. Population 137 Structure VCGsserve as a natural meansto subdivide fungal populations. The vic loci and alleles that define VCGs are presumedto be selectively neutral with respect to traits such as pathogenicityand vegetative viability per se. If selection acts to maintain a large numberof VCGswithin a population, perhaps due to the values of individualism such as those described by Rayner(143) or to reduce spread of infectious agents (23, 71), then frequency-dependentselection may be reflected in the frequencies of individual vic genes and VCGs,and the numberof VCGsthat are maintained in the population. Expectations for the types of subdivisions induced by VCGs within a sexual population are quite different from those expected for an asexual population. If 10 vic loci with two alleles per locus are segregating in a population, then offspring can be produced that belong to over 1000 different VCGs.If the population reproduces sexually moreoften than selection and/or genetic drift can eliminate the different VCGtypes from the population, then there will always be a large numberof VCGsrepresented in the population. In general, then, a sexually reproducing population would be expected to have a high level of VCG diversity. Thus, if a character (such as pathogenicity or race) is determined by one or a few genes, there probably will be no correlation between race and VCG.Since some transfer of mitochondria can occur betweenstrains in different vegetative compatibility groups, the subdivisions discerned in a population using VCGsmay not correspond 1:1 with those discerned using mtDNA polymorphisms (66). In an asexual population, differences at the vic loci are assumed to effectively limit the exchangeof genetic informationto those individuals that belong to the same VCG.Since sexual recombination does not occur, members of each VCGwill form a genetically isolated subpopulation that will be subjected to standard population genetic forces such as selection, mutation, migration, and drift (70). At their simplest, each VCGcan be thought of a series of clones of a single parental strain (although in reality each VCG will be composedof isolates that fortuitously possess the same set of vie alleles). As time passes, if all membersof the clone are equally fit, then members of the clone will be lost by chanceto randomgenetic drift. Similarly, if each VCG is equally fit, then VCGswill be lost by chanceto genetic drift, and the population will becomeless diverse. In each geographicarea different VCGswill be lost by chance, and it is unlikely that any one VCGwould~be retained at every site. If one (or a few) VCG is selectively morefit than most of the others, then membersof this group will tend to predominate in the population at different geographiclocations. Supposethat selection in such an asexual population occurs on the basis of virulence. Underthese conditions, strains that can attack a particular host will multiply in the presenceof that host, while strains that cannot attack the host should be found in lesser numbers,if at all. Althoughthe genetic alterations Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 138 LESLIE that give rise to newpathogenic races are not known,new races mayresult from a single gene mutation, and for simplicity I will makethis assumption. If the initial populationcontains no host-specific pathogenicstrains, then any strain in which a mutation to pathogenicity occurs will be at a selective advantage. Soil populations of some phytopathogenic fungi are extremely diverse with respect to VCG(33, 64, 65, 81), and thus, if mutations occur independently and at random, two mutants that are the result of different independent mutation events wouldbe expected to occur in isolates that are vegetatively incompatible. In contrast, isolates that are clones of each other wouldbe expected to be in the same VCG.Thus, pathogenic strains that are vegetatively compatible are presumedto have originated from the same clone evenif they are geographicallyisolated fromone another. Conversely,isolates with similar pathogenic capabilities that are vegetatively incompatible are assumednot to be clones, but to have developedtheir pathogenic capabilities independently. Distinctions such as these can enable investigators to distinguish betweenpathogenic strains that have arisen locally and those that have been imported from another location. VCG Stability The usefulness of VCG markers for population studies is dependentupontheir stability. Theavailable data indicate that most VCGs studied are stable through time and space, including laboratory manipulation. A possible exception to this general rule has recently been reported in C. parasitica, where mutants with altered vegetative compatibility were induced with UVlight (144). Some of these mutants were unstable with respect to their VCG-phenotype,but it is unclear from the data presented whetherthe instability is due to a mutator gene that was activated during the mutagenesisprocess or to an instability in the alleles at one (or more)of the vic loci. Theseresults are quite different from those reported by Anagnostakis (3), whofound no evidence for mitotic instability of VCGsin C. parasitica. In one study using N. crassa, changes in VCG appear to be associated with gross genomicreorganization rather than with simple mutation of one allelic form to another (127). There are instances in F. oxysporumin which the VCGphenotypes differ but the strains have identical mtDNA RFLPphenotypes and race designations (66, 76, 129). Changessuch as these could result from sexual recombination, but no sexual stage is knownin F. oxysporurn, and Gordon& Okamotohave suggested that exchangeof mitochondriacan occur betweenstrains that are in different VCGs but that differ at only one or a fewvic loci. Parasexuality Parasexuality has been proposed as a widespreadevent in somefungi, but this phenomenon requires the establishment of a stable heterokaryon in which the parasexual cycle of diploidization~haploidization can occur. The relative Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGALVEGETATIVECOMPATIBILITY 139 frequency of heterokaryon formation under natural conditions and the frequencyof subsequent parasexual recombinationhas been the subject of much speculation, and additional experimentationwill be required to relate existing claims [usually based on prototrophic recombinants recovered following selection (e.g. 20, 48, 105, 117, 146-148, 150)] to heterokaryon formation under field conditions. Parasexual recombinationis potentially an important mechanism in the life cycle of somefungi since it provides an alternative to meiosis for the reassortment of the organism’sgenome.It is not clear whether the transitory heterokaryons formed following fusion of two vegetatively incompatible strains are sufficient for parasexual genetic exchangeto occur, even though exchangeof at least somecytoplasmic constituents can occur. Distinguishing between true recombinants and grossly unbalanced heterokaryonsis a difficult technical problem,even with the use of molecular markers. At present, I would expect to see nuclear recombination under nonselective conditions only between isolates that belong to the same VCG. APPLICATIONS VCGsand their constituent vic loci have a numberof potential applications in addition to providing insights into the cellular and population biology of these organisms.Suggestedapplications are primarily in the area of population analysis and mirror the discussion of populations presented above. Applications of the vic gene phenotypes to questions in molecular and cell biology will becomemore apparent once we have enough knowledgeabout these genes to ask meaningfulquestions. Diagnostics The most useful application of vegetative compatibility for manyplant pathologists is the potential use of VCGsas a diagnostic tool. This application rests on the hypothesis (139) that strains in the samepathogenicgroup, e.g. forma specialis, race, etc, are in one or only a few VCGs.The pathogen is then identified through placementinto a particular VCG rather than through the muchmore laborious pathogenicity tests against a series of standard cultivars. Muchof the population work with VCGsin Fusarium has been concerned with testing this concept (6, 29, 30, 46, 51, 54, 65, 80-82, 94, 95, 102, 137, 139). The usefulness of the VCGsin this endeavor has varied greatly. It has been very useful, with tight correlations, within F. oxysporurn f. sp. apii (34, 138), F. oxysporumf. sp. conglutinans (10), andF. oxysporum f. sp. tnelonis (74-76). VCGsand pathogenic groups have been moderately well-correlated within F. oxysporumf. Sp. cubense (13,129-132). There have been no obvious correlations, however, in F. oxysporumf. sp. asparagi (55) and F. oxysporumf. sp. lycopersici (53). In developing VCGsas a diagnostic tool, it is important to rememberthat Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 140 LESLIE VCGs,as with other genetic and molecular tools such as RFLPs, RAPDs, and isozymes, are correlative in nature, and that correlation does not imply cause and effect. Most work to date has focused on subgroups of F. oxysporum, and this fungus is extremely widespread in cultivated and agricultural soils worldwide. Thus, it is important to complete Koch’s postulates to test the correlation betweenVCG and pathogenicity with isolates being used. Twotypes of error are possible if such tests are not madesince nonpathogenicstrains maybe recovered from diseased plants. In the first type of error, if a nonpathogenicstrain(s) is in the same VCG as the pathogenic strain, then the VCG test could detect artificially high levels of the pathogen. Based on somework with strains from nominally nonpathogenicsources (34, 64, 65), I expect this type of problemto be relatively rare. In the secondtype of error, strains apparently belonging to the same pathogenic subgroupwould belong to manyVCGs.In such a case manydifferent nonpathogenic strains maybe accompanyingone or a few pathogenic strains in their attack on the plant. Both types of errors can be eliminated by repeating Koch’spostulates with representative strains from each of the VCGsthat contains pathogenic strains. The usefulness of VCGsas a diagnostic tool can be strengthened if the strains contained within the VCGcan be shownto be related to one another, using a technique other than vegetative compatibility. Since VCGsare based on the constitution of the organismat a set of vic loci, twostrains maybelong to the same VCGbut yet not be asexual clones of a commonparent (21). the pathogenic strains within a VCG are all closely related or identical by other measuresof genetic variability, e.g. RFLPsor RAPDs,then these data wouldgreatly strengthen the idea that these strains are all derived from a common progenitor. In at least one case it has been possible to observe genetic differentiation within a single VCGof F. oxysporumf. sp. cubense (129). The usefulness of VCGsas a diagnostic tool could also be improvedif the need to generate nit mutants in all of the field isolates to be examinedcould be relieved. At present, these mutants can be generated sufficiently rapidly to enable research level investigations to proceed, but it is not practical to use this process on a commercialscale because of the amountof processing that is required for each field isolate. Analternative is to create a specific tester strain for each VCG that needs to be detected. The tester strain wouldhave one recessive marker that could be selected against and one dominantmarker that could be selected for. In the context of F. oxysporum the recessive marker would probably be an auxotroph that requires a growth substance such as amino acid, vitamin, or nucleic acid that the funguscould ordinarily synthesize for itself. This marker wouldprobably be induced using a mutagenicagent such as ultraviolet light, x-rays, or a chemical mutagen. The dominant marker would probably be a drug-resistance marker, although the ability to utilize an exotic compound or Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGALVEGETATIVE COMPATIBILITY 141 other dominanttrait could also be used. This marker could be introduced by recombinant DNA-mediated transformation or by mutagenesis. Available drug resistance markers include, but are not limited to, acriflavin, benomyl, hygromycin, and methyltryptophan resistance, and exotic compoundscould include acetamide. This strain could not grow by itself on the minimalmedium commonlyused for screening F. oxysporumbecause of its recessive auxotrophy. The tester strain would be incorporated into Komada’smediumthat had been amended with the appropriate drug or exotic compound. (Komada’s mediumis a commonlyused minimal mediumthat enriches for the Fusarium propagulesin field samples.) If testing for several different VCGs wasdesired, then several different tester strains could be incorporated into the sametest medium.Material containing the field isolates wouldbe distributed onto the agar surface using established techniques for the material being examined. Thedrug to whichthe tester strain is resistant wouldprevent the field strains from growing by themselves. Field strains and tester strains that are in the sameVCG could fuse to form stable complementaryheterokaryons. These heterokaryons wouldbe resistant to the incorporated drug (fromthe markerin the tester strain) and able to grow without unusual supplementation (from the prototrophic allele in the field isolate that wouldcomplementthe tester strain’s defect). The heterokaryons would appear as rapidly growing, vigorous colonies against a backgroundof inhibited growthof either the tester strain or field strains that belongin different VCGsand are unable to makea viable heterokaryon with the tester strain. The numberof heterokaryotic colonies can be used as a direct measureof the numberof fungal propagules of a particular VCG present in the material being sampled. Tests of Genetic Homogeneity VCGsare a convenient tool for determining if field isolates are clones of a common progenitor. Suchidentifications can be important in determining the numberof genetically distinct individuals within a population. VCGanalyses can also be used to determine if strains with unusual variants have a clonal origin. Such analyses have been used in Fusariummoniliforme to determine if the strains carrying mutations at the pall (25) andfuml(47) loci were clonal origin. In both cases, the strains examinedwere from distinct VCGs and therefore were not clones. Thesedata are insufficient to prove that the mutants are of independent origin, however, since sexual reproduction may lead to progenythat carry the samemutation but are in different VCGs. VCGscan also provide evidence for genetic nonhomogeneity.For example, nonpathogenicpopulations of F. oxysporumare quite diverse with respect to VCGsand similar to F. moniliforme in the amount of variability. In F. moniliforme, which has a knownsexual stage, the relatively large numberof Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 142 LESLIE VCGshas been attributed to sexual reproduction. This suggests that sexual reproduction maybe occurring covertly in F. oxy~porumeven though no sexual stage is knownfor this fungus. Here weseemto have a bullet hole in a target without the "smoking gun" that is usually required to prove that sexual reproduction is occurring. Similar situations are knownin other organismsas well, e.g. the amoebaNaegleria lovaniensis (126). A more careful examination of F. oxysporumfor a sexual stage may be warranted. To the extent that previous workers examinedonly strains from the same pathogenic and/or geographic origin, pairings mayhave been made primarily between isolates belonging to the same VCGand sexual recombination would not be expected to occur. In some mating populations of Gibberellafujikuroi(88) femalefertile strains are relatively rare. Thus, sexual recombination, if it occurs, probably wouldnot be frequent but could occur sufficiently often to maintain a large numberof VCGswithin the population. Isogenization and Genetic Mapping Genetically defined isogenic strains are a key underlying componentin most genetically tractable systems. The construction of isogenic lines is usually a tedious time-consumingtask that requires at least ten generations of backcrossing to a recurrent parent to achieve reasonable isogeneity (97). With relatively quick generation time of 4-6 weeks, such a project wouldrequire nearly a year just for the crosses, and longer if markers must be scored and evaluated before the next set of backcrosses can be started. Even at the end of such a process, a region of approximatelyten mapunits on either side of the inbred locus (and appropriate mating-type loci) wouldremainheterozygous (strictly speaking allozygous). Differences at the vic loci can be used to select "near-isogenic" lines following a single cross. The methodologyrelies on the fact that numerous vic loci are dispersed throughout the genome,and that allelic identity is required at all vic loci for stable heterokaryonformation. Whenbackcrossing to a fixed parent, someof the progenyin the first backcrosswill be as isogenic with the "recurrent" parent, as are the averageprogenyof the tenth (or later) backcrosses. The problemis to identify these near-isogenic progeny, since all of the progenywill be phenotypically identical. In the randombackcrossing approach, all of the progeny become"near-isogenic" through the laws of probability. If the two strains differ at numerousvic loci, however, then homozygosityat all of the vic loci (as assessed by heterokaryon formation betweensomeof the progenyand the recurrent parent) can be used to identify near-isogenic lines following a single cross. If strains are marked with appropriate auxotrophs (the nit mutants described above work quite well), then the near-isogenic progenycan be selected directly on a suitable medium. The process requires less time than the more traditional backcrossing procedure, but its efficiency depends upon the number and location of the Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. FUNGALVEGETATIVE COMPATIBILITY 143 heterozygousvic loci. If the markerbeing brought into the constant genetic backgroundis closely linked to one of the vic loci then more progenywill needto be analyzedthan if the vic loci and the inbred markerare moreloosely linked. Asa corollary to this isogenization process, it is also possible to count and to mapvic loci in systems where a sufficiently detailed genetic mapwith molecularmarkersexists. In essence, the two strains are crossed and a set of progenythat are vegetatively compatiblewith one of the parents is identified. The molecular markers segregating in the cross are then scored. Each heterozygousvic locus should sit at the heart of a region that is characterized by no crossing over within this highly selected progeny set. The numberof such regions should provide an estimate of the numberof heterozygous vic loci in the cross and the linked markersshould provide a starting place for the chromosomewalks needed to clone these genes. CONCLUSIONS AND PROBLEMS REMAINING Detailed molecular genetic investigations of mechanismsof vegetative compatibility are just beginning. Thesegenes governthe phenomenon of self-recognition and are not biochemical"housekeeping"loci, in the same sense that most biosynthetic genes are. Theseloci probably also play a critical role in fungal life cycles. Anunderstanding of their role in cellular and population terms should lead to newinsights as to howfungal cells and the populations to whichthey belong are organized. Someof the problemsof interest remaining listed below. 1, 2. 3. 4. 5. 6. Howmanydifferent types of vegetative compatibility interactions exist? Are vic genes essential? Howmanydiscriminatory alleles are there per vic locus? Whatrole, if any, do the vic genes play in the sexual cycle? Whatother genes, if any, are involved in vic gene expression? What is the molecular basis of the recognition and killing reactions associated with vegetative compatibility? 7. Howsimilar are the different vic loci within a fungus to one another, or to loci with similar functions in other fungi and other organisms? 8. Howimportant are the vic loci in delimiting fungal individuals? 9. Howimportant are the vic genes as blocks to genetic exchangeunder field conditions? 10. Whatis the significance of the VCGsubdivisions within populations? 11. Howstable are VCGsin nature? I suspect that progress in the area of vegetative compatibility, especially the molecularand cellular aspects, will be rapid. The vegetative compatibility phenomenon provides a simple modelfor self/nonself recognition and inter- Annual Reviews www.annualreviews.org/aronline Annu. Rev. Phytopathol. 1993.31:127-150. Downloaded from arjournals.annualreviews.org by Washington State University on 02/25/09. For personal use only. 144 LESLIE action, a commonproperty of biological systems. An understanding of the basic underlying biology should further the implementation of biological control measures that rely on the transfer of cytoplasmic hypovirulence factors, and perhaps provide new insights into the means that these organisms use to recognize other inhabitants of their environment. Population questions are already being addressed in some fungi using vegetative compatibility. The amount of variability present in some populations may determine the usefulness of VCGsas a diagnostic tool. At present there is no general rule about correlation between pathogenicity and VCG, with some systems showing useful correlation between VCGand pathogenicity, while others show little or no correlation. The alleles at the vic loci may be subject to frequency-dependent selection, and once molecular probes for different alleles becomeavailable direct studies of allele frequencies should be possible. An important constraint to many population studies is the lack of suitable theoretical models to test with the data that are rapidly becoming available. Development of these models will be as important to the interpretation of the population data as the development of the molecular tools necessary to obtain the data. Further studies of vegetative compatibility should lead to new insights into the organization, composition, and function of fungal individuals and populations. Answers to the numerous remaining population and cellular/molecular questions should complement one another and increase our understanding of how fungi distinguish self from nonself and why they might wish to do so. ACKNOWLEDGMENTS Contribution no. 93-251-J from the Kansas Agricultural Experiment Station, Manhattan. Research in my laboratory is supported by the Kansas Agricultural Experiment Station, the Kansas State Board of Agriculture (Kansas Corn Commission), and the Sorghum/Millet Collaborative Research Support Program (INTSORMIL) AID/DAN-1254-G-00-0021-00 from the US Agency for International Development, Washington, D.C. Portions of this manuscript were completed while I was on sabbatical leave in the laboratory of David D. Perkins, Department of Biological Sciences, Stanford University, Stanford, CA, and supported in part by US Public Health Service Research grant AI 01462 to Dr. Perkins. Literature Cited 1. Adams,G., Hammar,S., Proffer, T. 1990. 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