Biological Journal ofthe Linnean Sacit& (1982), 17: 289-306 With 2 figures The origins of plastids T. CAVALIER-SMITH, F.L.S. Department of Biophysics, King’s College, London University, 2&29 Drury Lane, London WC2B 5RL Accepttd for publication S$&tnber 1981 A new theory of plastid origins is presented in which only two symbiotic events are needed to explain the origin of the six fundamentally different types ofplastid, which all probably originated in anteriorly biciliated phagotrophic cells. Four of them can be derived directly from a single endosymbiotic cyanophyte by the independent loss of different cyanophyte characters and the evolution of new characters in the immediate descendants of this primary endosymbiosis. Retention of the phagosomal membrane as well as the prokaryotic plasma and outer membrane could produce the dinozoan and euglenid plastids with three envelope membranes, whereas the loss of the phagosomal membrane could produce the two-membraned envelopes characteristic of the Biliphyta and Verdiplantae*. The phycobilins were retained essentially unaltered in the Biliphyta, but are modified or lost in the other lines. In the ancestor of the Euglenozoa and Verdiplantae they were replaced by chlorophyll b. I n the ancestor of algae possessing chlorophyll c they were modified to the cryptophyte type, concomitantly with the evolution of chlorophyll cz : one line of descent from this ancestor produced the dinozoan plastid by the complete loss of phycobilins, while the other was incorporated by endosymbiosis into another phagotrophic bibiliate to produce the cryptophyte plastid. The latter evolved into the chromophyte plastid by the loss of phycobilins and the evolution of chlorophyll c,. The conversion of the endosymbiont into a plastid depended on the evolution of a system to transport proteins into it. I argue that this occurred by the modification of the pre-existing mitochondrial transport system, and that the major modifications needed to adjust this to plastids with more than two envelope membranes led to evolution of a new tubular o r disc-like morphology for the mitochondrial cristae of these groups. This new cristal morphology is maintained by stabilizing selection even in species that have secondarily lost plastids. KEY WORDS :-Plastids - mitochondria - coevolution - protein translocation Euglena - dinoflagellates - Cyanophora plastid envelope - phylogeny. - endosymbiont - ~ CONTENTS Introduction . . . . . . . . . . . . . . . . . . . Defects of existing theories for the origin of plastids with three envelope membranes . . A prokaryotic origin for dinozoan and euglenozoan plastids . . . . . . . . Origin of the cryptophyte and chromophyte plastids . . . . . . . . . . The relationship between cv(Inophora, other Glaucophyceae, and the Rhodophyceae . . The Origin of the Euglenozoa and Verdiplantae. . . . . . . . . . . Nature of the ancestral biciliate ‘hosts’ and the origin of mitochondrial diversity . . . The relationship between plastids containing phycobilins and those containing chlorophyll b or cz Testing the theory. . . . . . . . . . . . . . . . . . References. . . . . . . . . . . . . . . . . . . . 289 290 29 I 292 294 296 297 30 1 304 304 INTRODUCTION Only a few biologists (e.g. Uzzell & Spolsky, 1981) now dispute the theory of Schimper ( 1883) and Mereschkowsky ( 1905, 1910) that plastids originated endosymbiotically. A major reason for the growing acceptance of the theory since *Author’s Note: Vcrdiplantae should read Viridiplantae throughout. + 0024-lC66/82/030289 I8$03.00/0 I5 289 0 1982 The Linnean Society of London 290 T. CAVALIER-SMITH it was revived by Ris (1961) is the apparently simple way it explains plastid diversity in eukaryotes in terms of separate symbiotic events involving different hosts and symbionts (Mereschkowsky, 1910; Sagan, 1967; Raven, 1970). Six fundamentally different plastid types are known (Cavalier-Smith, 1981a), and each is present in a cell with other distinctive features sufficient to justify their classification into separate kingdoms or subkingdoms (Cavalier-Smith, 1981b). It is widely agreed that two of these plastid types arose endosymbiotically: red algal plastids from the prokaryotic cyanophytes (Mereschkowsky, 1905; Ris, 1961 ; Echlin, 1966; Sagan, 1967; Margulis, 1970; Taylor, 1970; Stanier, 1974), cryptophyte plastids by uptake of a eukaryote endosymbiont (Greenwood, Griffiths & Santore, 1977; Whatley, John & Whatley, 1979; Gibbs & Gillott, 1980; Gibbs, 1981). So also is the idea that chromophyte plastids evolved from cryptophyte ones autogenously by the loss of phycobilins (Cavalier-Smith, 1977, 1978; Gibbs, 1981). Thus the two groups with a double-membraned plastid endoplasmic reticulum (plastid ER) surrounding the plastid probably did not evolve their plastids directly from prokaryote endosymbionts. Although few authors now go to the extreme of postulating 20 independent endosymbioses (Sagan, 1967) to form plastids from prokaryotes, many accept the hypothesis that chlorophyte plastids evolved from prokaryotic symbionts like Prochloron (Lewin, 1981) independently of the origin of red algal plastids from cyanophytes. The idea that dinozoan and euglenoid plastids had separate origins as eukaryote endosymbionts is also widely discussed (Whatley, 1981;Gibbs, 1981). However, too little attention has yet been given to the nature of the possible hosts for those postulated endosymbioses for the idea of independent symbiotic origins of these plastids to be substantiated. At first sight it would appear that the differences in non-plastid characters between the six photosynthetic eukaryotic kingdoms supports the idea of several independent symbioses. However, an alternative explanation for these basic differences is that they arose after the initial endosymbiosis that led to the formation of plastids and that all eukaryote plastids are descended by divergent evolution from a single endosymbiotic cyanophyte. This paper discusses aspects of the process of conversion of a cyanophyte into a plastid, which makes such divergence highly probable, and provides a unified phylogeny for eukaryote plastids and their hosts. As this phylogeny requires only one symbiotic event (that producing the Cryptophyta for which the nucleomorph (Greenwood et al., 1977) provides evidence) in addition to the primary symbiotic uptake of a cyanophyte, for which Cjranophora provides firm evidence (Herdman & Stanier, 1977), the attempt to ‘relate the various classes of algae directly to each other’ is not as ‘futile’ as it once appeared (Sagan, 1967). Consideration of the mechanism of conversion of an endosymbiont into a plastid also leads to a new theory of the origin of mitochondria1 diversity. DEFECTS OF EXISTING THEORIES FOR THE ORIGIN OF PLASTIDS WITH THREE ENVELOPE MEMBRANES The direct derivation of Dinozoa* and Euglenozoa* from a eukaryote ancestor with two plastid envelope membranes, as in the Biliphyta* and Chromophyta*, would involve the arbitrary acquisition of a third envelope membrane for no *These and other names of major taxa are those explained in Cavalier-Smith (1981b). THE ORIGINS OF PLASTIDS 29 I obvious reason and from no obvious source. Therefore, autogenous theories must assume that they were derived from species with a plastid ER by the loss of one of the four membranes around the plastid. It was initially proposed that this occurred by the lateral fusion of two of the membranes (Gibbs, 1970), but such a process is entirely without precedent, and would pose severe and perhaps insuperable biophysical problems. A much more plausible way of reducing the number of membranes is by the loss of the outer, ribosome-bearing, membrane of the plastid ER, leaving three smooth envelope membranes and no remaining connection to the nuclear envelope (Lee, 1977; Cavalier-Smith, 1978). The Dinozoa could be directly derived in this way from the Chromophyta, but no suitable chlorophyll-bcontaining ancestor is available for this mode of origin for the Euglenozoa. Two non-autogenous theories have therefore been proposed. One is that the euglenozoan and dinozoan plastids originated by the endosymbiotic uptake of whole eukaryote cells (Gibbs, 1978, 1981), and that the third membrane corresponds with the plasma membrane of the preserved symbiont. This theory is reasonably plausible for the Euglenozoa, where the Chlorophyta provide possible ancestors for the symbiont, even though it involves the loss not only of the phagosome membrane, but of every trace of the symbiont except its plastid and plasma membrane-this degree of reduction is much greater than in other known cases involving eukaryote endosymbiosis. For the Dinozoa, however, the theory is much less plausible, because no eukaryotes exist with plastids of the required type (chlorophyll c,, no phycobilins, two envelope membranes and no plastid ER). Moreover, the existence of a few dinoflagellates with only two envelope membranes (Gibbs, 1981) makes a prokaryotic origin of their plastids more likely, as discussed below. The second symbiotic theory (Whatley et ul., 1979; Whatley, 1981) proposes that euglenozoan and dinozoan plastids evolved from eukaryote plastids taken up symbiotically from other eukaryotes (the possibility of a similar origin for glaucophyte plastids has also been mentioned, Cavalier-Smith, 1978).This theory also lacks a suitable plastid ancestor for the dinozoan ancestor. It has the serious additional defect, also emphasized by Gibbs (1981), that eukaryote plastids lack many of the genes coding for their own synthesis. Because of this incomplete autonomy, endosymbiosis of isolated eukaryote plastids can only be a temporary phenomenon, as occurs for the chloroplasts of Codium frugile in the seaslug ECysia (Trench, 1981). Even though such plastids may be able to replicate their DNA and divide once (or even more), their indefinitely continued propagation would not be possible in the absence of their necessary nuclear genes. A PROKARYOTIC ORIGIN FOR DINOZOAN AND EUGLENOZOAN PLASTIDS It is usually assumed that uptake ofa prokaryote endosymbiont into a phagosome could only produce a plastid with two envelope membranes: an inner one deriving from the symbiont’s plasma membrane, and an outer one deriving from the phagosome membrane. But this assumption neglects the fact that gram-negative bacteria all have a second ‘outer’ lipoprotein membrane in the cell wall outside the peptidoglycan layer (Braun, 1978). Since all prokaryotes with oxygenic photosynthesis are gram-negative and have an outer membrane, it is perfectly possible that this outer membrane could be retained following an endosymbiotic 292 T. CAVALIER-SMITH event to form a third membrane in the plastid envelope in between the former plasma and phagosome membranes. I propose that this is how the triple envelope membrane of the Dinozoa and Euglenozoa evolved. In the case of the Euglenozoa, the endosymbiont could have been a prochlorophyte possessing chlorophyll b like Prochloron (Leedale, 1978); whereas in the case of the Dinozoa it could have been a chlorophyll-c,-containing prokaryote like that hypothesized by Raven ( 1970). Even though such a prokaryote is not known, it might have become extinct as a result of competition with its photosynthetic eukaryote descendants. If the chlorophyll-c,-containing prokaryote was a planktonic relative of the Cyanophyta, having gas vacuoles but no flagella, and the adaptive zone it occupied is now filled by the chlorophyll-c-containingphytoplankton, notably the Dinozoa, Haptophyta, Bacillariophyceaeand Chrysophyceae, then these latter groups might just possibly have supplanted it because of the advantages of having cilia, mitochondria, phagotrophy and/or efficient saprotrophy. A more economical hypothesis, however, is that the symbiont was a cyanophyte, and that chlorophyll c, evolved during its conversion into the dinozoan plastid. The few Dinozoa with only two envelope membranes could have evolved by the loss of the prokaryotic outer membrane (i.e. the middle membrane in other Dinozoa), as is usually assumed to be the case for the chlorophyte and biliphyte plastids. However, if, as I argue, the outer membrane of the endosymbiont can be retained doing the conversion to a plastid, then one must consider the possibility that it is the phagosome membrane that was lost, not only in these exceptional dinoflagellates but also in other cases and that the outer envelope membrane in the Chlorophyta and Biliphyta may be homologous with the prokaryote outer membrane rather than the phagosome membrane. The origin of its special permeability properties might be easiest to explain by this idea. It is well known that the phagosome membrane has been lost in several cellular endosymbionts which are free in the cytoplasm (Whatley et al., 1979; Gibbs, 1981; Trench, 1981), but there is not a single proven case of the loss of the outer membrane ofa gram-negative endosymbiont. Therefore, I suggest that in all plastids, both the plasma and outer wall membrane of the prokaryotic endosymbiont are retained. If the phagosome membrane also is retained, one has a triple, if not a double envelope (Fig. 1 A-D). One advantage of postulating a direct origin of the dinozoan plastid from a prokaryote endosymbiont is that the great diversity of eyespots in the phylum can be readily understood as the result of independent origin in different species. O n the more conventional theory of a chromophyte origin for the dinoflagellate plastid, one might have expected then to have simply inherited one of the chromophyte eyespot types. ORIGIN OF THE CRYPTOPHYTE AND CHROMOPHYTE PLASTIDS An essential corollary of the above hypothesis is that the cryptophyte and chromophyte plastids which also contain chlorophyll-c, evolved from dinozoan plastids. This can only be the case if the cryptophyte phycobilins are derived not directly from those of the Biliphyta as often supposed (Gibbs, 1981; Whatley et al., 1979), but arose either de mu0 or from the Dinozoa. Since the Dinozoa have no phycobilins, and since the cryptophyte phycobilins are very different from the biliphyte ones, a de mu0 origin is superficially plausible. Recent studies of T H E ORIGINS OF PLASTIDS 293 Figure I . The origin of the characteristic topology of plastid envelopes in eukaryotes. A phagotrophic biciliate (A) with a single nucleus (n) engulfed a gram-negative photosynthetic prokaryote (B) with a plasma membrane and an outer membrane to yield a photosynthetic biciliate (C) with three membranes surrounding its plastid (p) as in the Euglenozoa and most Dinozoa. The third outermost membrane is the phagosome membrane. Lou of the phagosome membrane can produce a plastid with two bounding membranes (D) as in the Biliphyta, Verdiplantae, and a very few Dinozoa. Symbiotic uptake of such a eukaryote (E) by a non-photosynthetic phagotroph (A) followed by fusion of the phagosome membrane with the nuclear envelope produces a cryptophyte arrangement (F) with a plastid endoplasrnic reticulum (per) surrounding the eukaryote endosymbiont’s vestigial cytoplasm and nucleus (now represented by the nucleomorph, labelled arrow). The outer membrane of the plastid ER is derived by fusion of phagosome and outer nuclear envelope membranes and has ribosomes on it like the nuclear envelope: the three-membraned envelope of the Euglenozoa and Dinozoa (C) never fused with the nuclear envelope so never acquired ribosome binding sites. Theinner membrane of the PER is the former plasma membrane of the eukaryote endosymbiont (D). Loss of the contents of the nucleomorph-containing compartment gave the arrangement of four concentric membranes seen in the Chromophyta (G). The outer membrane of the prokaryote was retained in all plastids, but the thin peptidoglycan layer (not shown here) lying between it and the prokaryotic plasma membrane was lost in all except Cyanophora. A minimum of two endosymbioses are therefore needed to explain the origins of plastids. cryptophyte sequences, however, show strong sequence homology between one cryptophyte and one biliphyte phycobiliprotein (MacColl & Berns, 1979), which firmly rules out de novo origin. However, a second biliprotein shows almost no sequence homology between the two groups, which also make improbable a direct derivation of the cryptophyte plastid from those of red algae as has often been proposed (Dodge, 1979; Gibbs, 1981). Therefore, two other possibilities must be considered. One is that there once existed a free-living prokaryote, which had thylakoids fundamentally the same as in the cryptophyte, i.e. arranged in pairs with biliproteins inside the thylakoids rather than on their surface as in cyanophytes and 294 T. CAVALIER-SMITH biliphytes, and with chlorophyll c, (but not c , ) . I call this hypothetical prokaryote a procryptophyte. If the organism that ultimately became the difiozoan plastid was a procryptophyte with cryptophytic phycobilins, rather than a prokaryote possessing only chlorophyll c,, then its endosymbiotic uptake by a dinozoan host could lead, by the differential loss of different symbiont properties, to three separate evolutionary lines. (1) A line that lost the phycobilins to yield the majority of the modern Dinozoa; (2) a line that also lost the phagosome membrane leading to the Dinozoa with double-membraned envelopes; and (3)a line that retained the phycobilins but lost the phagosome membrane to yield an organism with cryptophyte phycobilins and chlorophyll c, but no plastid ER. This third organism is now extinct in its free living form but ‘survives’as a much reduced endosymbiont in the lumen of the plastid ER of the Cryptophyta (Fig. 1F). The presence of starch in the compartment containing the cryptophyte cryptonucleus indicates that the symbiont that gave rise to the cryptophyte plastid and cryptonucleus must have stored starch in its cytoplasm; this is usually seen as support for the idea that it was a red alga-but as dinozoa also store starch in the cytoplasm and unlike red algae process chlorophyll c,, and red algal phycobilins differ from those of cryptophytes, a dinoflagellate that had not yet lost the phycobilins from its procryptophyte endosymbiont is a far more suitable candidate. As in previous theories, the chromophyte plastid can readily be derived from the cryptophyte one by the loss of phycobilins and the nucleomorph compartment (Fig. lF, G) and the origin of chlorophyll c,, which significantly is absent in both the Dinozoa and the Cryptophyta. The unique occurrence of the carotenoid peridinin in the Dinozoa is readily explained if it was present in the procryptophyte but was lost during or prior to the formation of the cryptophyte plastid. I therefore predict that if a procryptophyte is ever found in some remote part of the world it will have the following characters: (1 gram negative wall; (2) paired thylakoids containing phycobilins homologous wit those of cryptophytes ; (3) chlorophyll c, but not c , ; (4)peridinin; and (5) gas vacuoles. Such an organism could, like Prochloron, be a specialized offshoot of the Cyanophyta. The second possibility, which I prefer, is that a free-living procryptophyte never existed but only evolved from a cyanophyte ancestor after it became an endosymbiont and was well on its way towards becoming a plastid (see later section). i THE RELATIONSHIP BETWEEN CYANOPHORA, OTHER GLAUCOPHYCEAE, AND THE RHODOPHYCEAE If, as argued above, elements of the cell wall of prokaryotic endosymbionts may be retained in highly evolved plastids, and a single endosymbiosis may give rise to several different lines by the loss of different prokaryotic components, it becomes necessary to re-evaluate the position of Cyanophora and the Glaucophyceae. These organisms are usually dismissed as mere analogies showing how the endosymbiosis of a cyanophyte could in principle lead to the origin of a red algal plastid, and treated as a mere ragbag of independent and rather recent endosymbioses of no phylogenetic import. I propose that on the contrary they are all derivatives of the very same endosymbiotic event that gave rise to the red algal plastid, and have THE ORIGINS OF PLASTIDS 295 profound implications for eukaryote phylogeny. Apart from Paulinella, which is clearly a thecamoeba and which may well be a recent and poorly established symbiosis, the painstaking work of Kies (Kies, 1979; 1980) and his colleagues (Kremer, Kies & Rostami-Rabet, 1979; Kremer, Feige & Schneider, 1978) has clearly established that there is an evolutionary relationship between the ‘host’ cell of four ‘cyanelk’-bearing organisms Cyanophora, Glaucocystis, Gloeochaete and Glaucosphaera, and that these cannot be assigned to any existing non-phycobilincontaining eukaryote taxon. Therefore, the establishment of a separate taxon for them (Skuja, 1954) is entirely justified. Kies (1979, 1980) follows Skuja in giving them phylum status as the Glaucophyta. I prefer to emphasize their relationship to the red algae by treating them as a class, the Glaucophyceae, grouped with the class Rhodophyceae (red algae) in a new phylum (and kingdom) Biliphyta (Cavalier-Smith, 1981b) . The plastids of Glaucocystis, Gloeochaete and Glaucosphaera are indistinguishable from those of the red algae. That of Cyanophora differs only by having retained the peptidoglycan layer of the cell wall as well as the outer membrane (Herdman & Stanier, 1977; Aitken & Stanier, 1979). I do not accept that this means that the Cyanophora endosymbiosis is of recent origin. If the outer wall membrane can be retained for hundreds of millions of years, as I have argued for the Euglenozoa and Dinozoa, why not also the peptidoglycan? The conversion of a prokaryote into a plastid must involve a succession of steps that probably took many cell generations. It is usually assumed that all the steps were completed prior to any subsequent speciation. However, if, as seems a priori more reasonable, some diversification occurred during the process, it would not be surprising to find a number of different types of plastid arising as a result of differences in the conversion process in different lines. All the evidence supports the idea that the Glaucophyceae (the four genera referred to above) and the Rhodophyceae all derive from a single symbiotic event. The Glaucophyceae and Rhodophyceae both have starch in their cytoplasm. No existing definition of the Rhodophyceae would exclude the non-ciliate Glaucospharea. The spectrum running from Glaucosphaera, through Cyanidium to unicellular red algae, such as Porphyridium aerugineum and purpureum is continuous. When it was thought that red algal plastids had an autogenous origin but that glaucophyte plastids were endosymbionts, there was a justification for making a sharp distinction between them. But now that it is established that the genome of the Cyanophora cyanelle is the same size as that of true plastids (Herdman & Stanier, 1977), there is no longer any justification for not regarding it as a true plastid, or for giving it a systematic name like a cyanophyte, even though it still retains its peptidoglycan. The assimilate pattern in the Glaucophyceae and Cyanidium are similar. The only way the Glaucophyceae and Rhodophyceae can be unequivocally distinguished is by the presence of membranous alveoli in the cortex of the Glaucophyceae similar to those in several Protozoa. Since three of them are anteriorly biciliated with non-tubular mastigonemes, and two (Glaucocystis and Gloeochaete) have four microtubular roots with a characteristic multilayered structure (MLS), and an anterior ciliary depression, there can now be little doubt that the ancestor of the Biliphyta was a colourless phagotrophic cell with a pellicle with underlying cortical alveoli and two anterior flagella bearing non-tubular mastigonemes. The next section will review evidence suggesting that the chlorophyll-b-containing algae also derive from a single endosymbiotic event involving an anteriorly biciliated phagotroph with a pellicle, gullet and non- tubular mastigonemes. 296 T . CAVALIER-SMITH THE ORIGIN OF THE EUGLENOZOA AND VERDIPLANTAE If, as argued above, the Euglenozoan plastid originated by the uptake of a prokaryotic endosymbiont, as is generally accepted for the verdiplant plastid (Gibbs, 1981 ; Whatley 1981), the simplest hypothesis is that only one such event occurred and that the two kingdoms diverged early on from each other during the establishment of the green plastid from a common ancestral symbiont. The resemblances in thylakoid stacking and organization between the two groups and the differences from Prochloron emphasized by Gibbs (1981) support the idea of a common origin of both plastids. Since plastid origin by endosymbiosis necessarily involves the loss of some endosymbiont genes, the absence of starch in Euglenu can easily be explained by the loss of the genes for the starch-making machinery. The presence of the p- 1-3-linked paramylon in Euglena cytoplasm outside the plastids is readily explained if the phagotrophic host used it instead of a-1-4 linked starch as storage material, and if these host genes were lost instead in the chlorophyte line. The phylogenetic importance of such differential loss of different characters in different lines has been emphasized before (Cavalier-Smith, 1978) and is a particularly likely event following endosymbiotic events that create redundancy by placing two functionally equivalent processes in the same cell (Whatley et al., 1979).Differential loss of the lysine synthetic pathways must also have occurred; I proposed (Cavalier-Smith, 1980) that the host had the amino-adipic acid (AAA) pathway and the prokaryotic symbiont the diaminopimelic acid (DAP) pathway, and that the host pathway was lost in the chlorophyte line. In the Euglenophyceae, the host A M pathway is retained instead. In the non-photosynthetic Kinetoplastida, which I treat as a class of the Euglenozoa, the DAP pathway is retained, strongly indicating that they are derived from a photosynthetic derivative of the prochloryphyte endosymbiosis and diverged very early from the Euglenophyceae. In the Chromophyta and Rhodophyceae, the symbiont DAP pathway appears to be retained; it would be valuable to know the situation in the Glaucophyceae, Cryptophyta and Dinozoa (and other Protozoa). If the Euglenozoa and Chlorophyta diverged early on, and eyespots evolved subsequently and entirely independently, their location inside the chlorophyte plastid, but free in the euglenophyte cytoplasm is readily explained. Clearly therefore, many of the fundamental differences between Euglenids and Verdiplantae, which have appeared to contradict the evidence of their pigment similarities, can be readily explained by the common origin for their plastids from an ancestral chlorophyll-b-containing endosymbiont. It has long been recognized that the ciliary rootlets of the Chlorophyta differ from those of the Euglenozoa, but the recent discovery of an MLS in some of the most primitive Euglenids (Moestrup, 1978) that closely resembles the similar structures in the Verdiplantae, supports the idea that the divergences are secondary and do not conflict with a common origin for the two kingdoms. With increasing knowledge of the Prasinophyceae, now widely recognized as the most primitive class of the Verdiplantae (Moestrup, 1978; Stewart & Mattox, 1978), a common origin becomes highly plausible. This is because, unlike the higher Verdiplantae, the Prasinophyceae like the Euglenophyceae are naked and have an apical gullet-like pit, and sometimes even trichocysts (though admittedly of a very different form). Although the nuclear division of most Verdiplantae differs from that of the Euglenophyceae, one or two species (Heath, 1980) show no significant differences : THE ORIGINS OF PLASTIDS 29 1 the differences can therefore be attributed to subsequent divergence. The absence of the nine-pointed star in Euglenophyceae is also compatible with a common origin, since this is the ancestral condition found in all eukaryotes except the Verdiplantae: the star must have evolved in the Verdiplantae after their divergence from the Euglenozoa. Although the narrow-necked disc shape of euglenozoan mitochondria1cristae is unique, it would not be hard to derive it from the ancestral plate-like condition after the divergence from the chlorophyte. We may therefore conclude that the Euglenozoa and the Verdiplantae both arose from a common ancestral naked phagotroph with plate-like cristae, an anterior gullet, and two anterior cilia lacking tubular mastigonemes and a ninefold star, shortly after it began to convert a chlorophyll-b-containing endosymbiont into a plastid. The Euglenozoa remained mainly biciliates, though many lost phagocytosis, whereas the Prasinophyceae lost phagotrophy and gave rise to three lines of walled algae, each of which evolved non-motile descendants (Stewart & Mattox, 1975, 1978). NATURE OF THE ANCESTRAL BICILIATE ‘HOSTS’ AND THE ORIGIN OF MITOCHONDRIAL DIVERSITY Stewart & Mattox (1980) have cogently argued that all phytoflagellates evolved from asymmetrical non-photosynthetic phagotrophs with a gullet, pellicle and anterior cilia, and which phagocytosed photosynthetic prokaryotes and converted them into plastids. My detailed analysis of plastid origins in the preceding sections, and the new seven-kingdom classification (Cavalier-Smith, 1981b), strongly supports their argument. There now seems little doubt that all six of the eukaryote kingdoms with photosynthetic members (i.e. Verdiplantae, Euglenozoa, Protozoa, Biliphyta, Cryptophyta and Chromophyta) evolved from non-photosynthetic phagotrophs with two anterior cilia. The nature and origin of these phagotrophs therefore becomes of great importance, and here my interpretations differ profoundly from Stewart & Mattox (1980).They propose that the most primitive ciliates are the Dinozoa but do not explain how they, or cilia evolved. Their suggestion is based primarily on the view that dinozoan mitosis is primitive. In my view, detailed elsewhere (Cavalier-Smith, in prep.), dinozoan mitosis is advanced and derived, and the most primitive mitoses resemble those of the hemiascomyete yeasts. I have also argued that no biciliate organism is really primitive (CavalierSmith, 1982), and that the biciliate condition evolved only after the origin of phagocytosis, before which only eukaryotes with a single posterior cilium existed, i.e. the Ciliofungi. According to this interpretation, the first biciliates had platelike cristae like the Glaucophyceae and Verdiplantae and not tubular ones as found in the Dinozoa. The evidence discussed above suggests that the biciliate ancestor of the Biliphyta, Chlorophyta and Euglenozoa all had plate-like cristae and MLS rootlets. However, the Dinozoa have tubular cristae and no MLS. This might suggest that two very different groups acted as hosts for the endosymbiotic origin of plastids. However, the presence of an alveolate pellicle in the Glaucophyceae and Euglenozoa as well as the Dinozoa suggests that they may have been quite closely related. In support of this is the occurrence of MLS rootlets in the proteromonad Karatonympha which, like Dinozoa and other Protozoa, has tubular cristae (Brugerolle & Joyon, 1975). The widespread presence of the distinctive MLS in 298 T. CAVALIER-SMITH such different groups marks it strongly as a primitive character that was present in their common ancestor but has been lost independently in different lines, e.g. in the Dinozoa and most Euglenozoa. The presence of a dense rod beside the ciliary axoneme of Dinozoa and Euglenozoa also indicates a close relationship, despite the differences in cristal morphology. The varied mitotic mechanisms of the present day descendants’ different biciliate hosts can as, argued elsewhere (Cavalier-Smith, in prep.), reasonably be supposed to have arisen after the establishment of plastids. The only major aspect of cell structure that argues against a very close relationship between the different biciliate hosts, are the differences in cristal morphology. Each plastid type is associated with a characteristic and distinct cristal morphology. The differences in cristal morphology go beyond the simple tubular/plate-like dichotomy (Taylor, 1976, 1978). Typical plate-like cristae are found only in the two kingdoms (Biliphyta and Verdiplantae) with two membranes in the plastid envelopes and no plastid ER. The Euglenozoa have discshaped cristae with narrow necks (Taylor, 1976), the Cryptophyta have flattened tubular cristae (Santore and Greenwood, 1977), the Chromophyta have unflattened tubular cristae of relatively large diameter, the Dinozoa (and most non-photosynthetic Protozoa) have narrower more highly curved tubular cristae (Taylor 1976, 1978). Did these differences arise before, during or after the acquisition of plastids? The simplest explanation of this remarkable association of the five cristal types with different plastid morphologies, is that the differences originated during the establishment of plastids and have conservatively been maintained ever since by stabilizing selection. On this hypothesis all the different non-photosynthetic hosts had the same cristal morphology, which I suggest was the conventional plate-like kind because this is the morphology found in the Ciliofungi which I have argued were the first organisms to evolve cilia (Cavalier-Smith, 1982). On this hypothesis, mitochondrial and plastid morphology are fundamentally coadapted and unable to evolve independently of each other. I propose that the mechanistic basis for this coadaptation is the possession of related mechanisms for the transport of cytoplasmically synthesized proteins across their envelope into the mitochondrial and plastid matrices. Mitochondria and chlorophyte plastids have similar methods of post-translational transport of proteins across their envelopes (Blobel et al., 1979; Neupert & Shatz, 1981). In both cases, transport is mediated by receptor proteins embedded in the.envelope, perhaps in regions where the inner and outer membranes are in contact (Blobel et al., 1979), and is accompanied by the cleavage of a signal peptide from the precursor protein. I have pointed out (Cavalier-Smith, 1980) that the establishment of transenvelope protein transport would have been a key step in the conversion of an endosymbiont into a plastid, and proposed that the mechanism evolved first in mitochondria and was then simply adapted for plastids (CavalierSmith, 1980). If the proteins that mediated protein transport across the mitochondrial envelope in the non-photosynthetic hosts were coded by nonrepeated nuclear genes, as is highly probable, it follows that the process could not be modified to suit it to an endosymbiont undergoing conversion to a plastid without at the same time affecting mitochondrial transport. Mutations in the nuclear genes would have a pleiotropic effect on both plastid and mitochondrial transport : changes selected because they allowed the transport mediating proteins to interact better with plastid envelopes could affect their interactions with the mitochondrial envelope. Other envelope components that interact with this THE ORIGINS OF PLASTIDS 299 transport machinery will therefore also coevolve in plastids and mitochondria. Changes would also be selected to give the mitochondrial and plastid systems distinct specificities, so as to prevent transport of mitochondrial proteins into plastids or vice versa. During the establishment of plastids there would, therefore, necessarily have been marked changes in some aspects of mitochondrial envelope structure until the optimal coadaptation of plastid and mitochondrial protein transport was achieved. Thereafter, any changes in either would be highly disadvantageous and selected against ever after ; mitochondrial and plastid structure would be evolutionarily frozen. Therefore, this hypothesis for the first time gives a rational explanation not only for the origin. of the different mitochondrial morphologies, but also for their characteristic association with particular plastid types, and for the great evolutionary stability, and therefore phylogenetic value, of both mitochondrial and plastid envelope morphology. I shall not be surprised if comparative study of the molecular basis of transenvelope protein transport in the different kingdoms eventually proves its correctness. Even now one can give additional arguments for it. It is highly significant that the only biciliate photosynthetic kingdoms with the ancestral type of plate-like cristae found in Eufungi, Ciliofungi and animals, namely the Verdiplantae and Biliphyta, are also the only photosynthetic kingdoms which have plastids with only two surrounding membranes. Since mitochondria also have two envelope membranes, it can be argued that the adaptation of the mitochondrial protein-transport system to this kind of plastid would not require alterations large enough to alter significantly the mitochondrial inner membrane morphology. For plastids with three or four surrounding membranes much larger modification of the mitochondrial transport system would be needed to adapt it to plastids, which would have correspondingly larger repercussions on cristal structure. Since this process must have occurred independently in each of the four kingdoms lacking standard plate-like cristae, it is not surprising that the detailed changes and resulting cristal morphology are different in each case. The nature of the changes would depend in part on the nature of the plastid envelope membranes into which the transport system had to become embedded. The exact nature of the molecular changes must await future study, but it is reasonable to argue that changes in inner mitochondrial membrane structure, dictated by changes in the transenvelope protein transport system, would have led to concomitant coadaptive changes in respiratory chain proteins embedded in it, or bound to its surface like cytochrome c. Indeed, the cytochrome phenetic tree (Dayhoff & Schwartz, 1981) strongly supports the present interpretation. The verdiplant, animal, and eufungal cytochromes are most similar to each other, but the euglenozoan cytochromes are considerably removed from this cluster. The cytochromes of the Infusoria (=Ciliophora) are even more different, which is expected if they evolved from dinozoan ancestry. A useful test of the present interpretation would be to obtain mitochondrial cytochrome c sequences from the four kingdoms for which they are not available (Chromophyta, Cryptophyta, Biliphyta and Ciliofungi) and for the seven protozoan phyla not yet studied. I predict that the biliphyte and ciliofungal cytochromes will be close to the verdiplant, animal and Eufungi cluster (but form distinct lines within it), whereas the chromophyte and cryptophyte cytochromes should form distinct lines in a cluster 300 T.CAVALIER-SMITH near the protozoan ones, The other protozoan phyla should be close to the Infusoria. A corollary of my interpretation of cristal diversity is that all the nonphotosynthetic members of the kingdom Protozoa, as well as the kingdoms Chromophyta, Cryptophyta and Euglenozoa, are derived from the single photosynthetic ancestor for each of these kingdoms that first evolved their characteristic plastid and mitochondrial morphology. The most prominent colourless groups in the Chromophyta and Euglenozoa are the Phycomycotina (Cavalier-Smith, 1981b) and Kinetoplastida, respectively, both of which have the DAP lysine pathway which gives independent support for a photosynthetic ancestry (Cavalier-Smith, 1980, 1981a). In the Protozoa, such independent evidence is so far lacking, but the explanatory power of the coadaptational hypothesis for the origin of mitochondrial diversity is so strong that it seems reasonable to suppose that all Protozoa with tubular cristae-the vast majoritymust have photosynthetic ancestors with plastids like those of the Dinozoa, which places the Dinozoa in a pivotal position for interpretation of protozoan phylogeny. The fact that the Phycomycotina, Kinetoplastida, colourless Chrysophyceae, and large numbers of Protozoa have retained the cristal morphology of their photosynthetic ancestors despite the loss of plastids, probably hundreds of millions of years ago, demonstrates that plastid/mitochondrion coadaptation is not the fundamental explanation of the stability of cristal morphology, even though it may be essential to explain its origins. The origin of the vesicular cristae of some amoebae and gregarines is not explained by the present theory. However, stabilizing selection acting on mitochondrial envelopes alone may be a less potent stabilizing force than if it is acting simultaneously on mitochondria and plastids ; maybe in a group like the Sarcodina, that may have split off from the photosynthetic biciliate ancestor at a very early stage, later changes in cristal morphology were possible. However, the possibility should also be considered that the Protozoa with vesicular cristae are derived from an extinct photosynthetic ancestor that had evolved a different type of plastid from any now extant, and that the origin of vesicular cristae was therefore by the same mechanism as for the other five non-plate-like types. The present coadaptational theory of the origin of mitochondrial diversity has much more explanatory power than the theory of several separate endosymbiotic origins for mitochondria (Dayhoff & Schwartz, 1980, 1981 ; Stewart & Mattox, 1980). On the multiple symbiosis theory, the association between the five cristal and plastid types must either be dismissed as a coincidence or ‘explained’ by postulating an unknown factor determining which mitochondrial symbionts could become established in which hosts. Moreover, although there are purple-nonsulphur bacteria with vesicular respiratory membranes and ones with plate-like ones, there are none with disc-shaped euglenozoan-like, or flattened tubular cryptophyte types; nor does the morphology of the few species with limited tubular membranes closely resemble the protozoan or chromophyte tubules. Thus, the required diversity of morphology does not exist in the most likely group of potential symbionts. Moreover, the purple-non-sulphur bacteria with cytochrome c, most closely resembling mitochondrial cytochrome c (including that of species with tubular cristae) are all budding species with plate-like membranes. A symbiotic theory of mitochondrial origin is entirely unnecessary now that one can explain in great detail the origin of the whole eukaryote cell by the conversion of a colourless THE ORIGINS OF PLASTIDS 30 1 derivative of a budding purple-non-sulphur bacterium with plate-like respiratory cisternae into a budding yeast with plate-like mitochondrial cristae (CavalierSmith, in prep.). The above discussion of the origin of mitochondrial diversity has been entirely in terms of the needs for protein transport into plastids. There are, however, also many translocators of small molecules in the plastid envelope (Wellburn & Hampp, 1980) some of which may have been derived from mitochondrial translocators and which may therefore have been important for the coevolution of mitochondria and plastids. A further possibility is that some t RNA transport into mitochondria occurs in organisms such as Tetrahymena (Chiu, Chiu & Suyama, 1975) having tubular cristae, but not in those such as yeast and animals with platelike cristae, and that tubular cristae are essential for this RNA transport. If the reality of RNA transport into 'Tetrahymena is confirmed, it will be important to seek it also in other Protozoa and in the Chromista. THE RELATIONSHIP BETWEEN PLASTIDS CONTAINING PHYCOBILIN AND THOSE CONTAINING CHLOROPHYLL B OR C , No one doubts that Cyunophora evolved its plastid by modification of an endosymbiotic cyanophyte (Herdman & Stanier, 1977) : the evidence discussed above quite strongly suggests that not only the plastids but also the host cells of the other Glaucophyceae are related to Cyanophora and are all derived from the same symbiotic event ; the Rhodophyceae clearly seem to have been derived from nonciliated Glaucophytes like Glaucosphaera by the loss of the pellicle and formation of a cell wall to produce an intermediate like Cyunidium. Therefore, all the Biliphyta probably have a single common ancestor: the phagotrophic biciliate that first began to convert a symbiotic cyanophyte into a plastid. I have also provided evidence that the chlorophyll-b-containing plastids of the Euglenozoa and Verdiplantae originated in a biciliate phagotroph by the conversion along divergent lines of a single photosynthetic prokaryote endosymbiont into two distinct types of plastid. The arguments presented here indicate that this host had essentially the same structure as the ancestral host of the Biliphyta : both probably had a pellicle, anterior gullet, MLS, non-tubular mastigonemes and plate-like cristae. This means that one should consider very seriously the possibility that the biliphyte, euglenophyte and chlorophyte plastids all originated endosymbiotically from a single cyanophyte, and that the origin of chlorophyll b occurred during the process of conversion of it into a plastid in a line that lost phycobilins. The problematic glaucophytes Cyanidium and Gluucocystis share several features with the Rhodophyceae and Verdiplantae. Cyanidium has the sterol ergosterol, like Verdiplantae and unlike the Rhodophyceae, and the sterol camposterol like the Rhodophyceae and unlike the Verdiplantae; like the Verdiplantae it lacks phycoerythrin but like the Rhodophyceae it lacks chlorophyll b (Seckbach, Hammerman & Hanania, 1981): moreover, its starch is like that of cyanophytes, and not Rhodophyceae or Verdiplantae. Gluucocystis on the other hand has starch indistinguishable from that of the Verdiplantae and unlike that of all other Biliphyta or cyanophytes. The puzzling and varied distribution of characters in the Glaucophyceae suggests that they may be evolutionary relics of alternative pathways of plastid formation that never underwent extensive adaptive radiation. They may give us 302 T. CAVALIER-SMITH powerful clues as to the nature of the host biciliate as well as the process of plastid formation. Detailed study of the location and sequence of the genes coding for the storage polyglucans (Frederick, 1981) in various Biliphyta should help clarify the relationships between the Glaucophyceae and Rhodophyceae, and to decide whether the anomalous green thermophile Cyunidiurn is not a rhodophyte but really a glaucophyte as several lines of evidence indicate (Kies, 1980; Seckbach, Hammerman & Hananig, 1981) . Prochloron may simply be a red-r rather green-herring. Its possession of chlorophyll b is not enough to establish it as the ancestor of chloroplasts. chlorophyll b differs from chlorophyll a only by the replacement of two hydrogen atoms by a n oxygen atom-a slender thread on which to hang a weighty argument. The absence of phycobilins in both chloroplasts and Prochloron is no evidence of affinity. Nor is thylakoid stacking, which is found in every kind of plastid in which phycobilisomes are absent, and so is likely to be an inevitable evolutionary consequence of the loss of phycobilins. Gibbs (1981) has pointed out significant differences in the thylakoid arrangement in Prochloron and eukaryote chloroplasts. This is in marked contrast to the thylakoids of cyanophytes and biliphyte plastids, which in many cases are completely indistinguishable. Another objection to the prochlorophyte theory of chloroplast origin is that Prochloron is not free-living but is itself a symbiont inhabiting a multicellular animal. I suggest that free-living prochlorophytes never existed, and that Prochloron itself is derived from a symbiotic cyanophyte by the loss of phycobilins and the concomitant evolution of chlorophyll b and thylakoid stacking. It may be a case of convergent evolution in response to a similar niche. If the case of Prochloron is dubious, that of the completely hypothetical procryptophyte is even worse. As emphasized earlier, major changes must necessarily occur during the formation of plastids from a symbiont. This means that the major changes that led to the origin of chlorophyll c, and the cryptomonad phycobilins are more easily understood as occurring during the conversion of a symbiotic cyanophyte into a cryptophyte type of plastid than in free-living cyanophytes, which appear to be evolutionarily very conservative. Therefore, since there is no evidence for the existence of a procryptophyte, the most economical hypothesis would be that this is what happened, and that the dinozoan plastid also is derived by divergent evolution prior to the full establishment of the plastids from the very same cyanophyte symbiont that formed the biliphyte plastid. In support of this, one may quote the close similarity of plastid cytochrome cs of the brown chromophyte alga Aluriu with that of red algae and cyanophytes (Schwartz & Dayhoff, 1981). Therefore, I postulate that chlorophyll-b-, c,- and phycobilin-containing plastids are all descended from the same endosymbiont and that the basic differences between them originated because the conversion of the symbiont into plastids took a different course in different early descendants of the initial host, as argued above in the discussion of the origin of mitochondria1 diversity, and summarized in Fig. 2. The resemblances between the cilia and the pellicle of the Euglenozoa and Dinozoa support the idea that they diverged from a common ancestor similar to that of Gluucocystis, Cyunophoru and Gloeochaete. The origin of the Cryptophyta probably also involved a related biciliate as a host, which probably differed mainly in having tubular rather than non-tubular T H E ORIGINS OF PLASTIDS 303 Figure 2. A phylogeny for photosynthetic eukaryotes assuming only two endosymbioses. A nonphotosynthetic phdgotrophic eukaryote (A) with a single nucleus (n), two anterior cilia bearing nontubular mastigonemes, a gullet and a pellicle engulfed a cyanophyte to produce an endosymbiotic cyanelle with three bounding membranes (B). The cyanelle became rapidly established in the host and stably passed on to its offspring at cell division. The conversion of the cyanelle into a plastid took many cell generations and therefore took a different course in different descendants of the initial symbiotic complex (B). Three main lines evolved ( I ) , (2), and (3). In that leading to the Biliphyta, the phagosome membrane was lost (-p) but the thylakoids and pigments remained essentially unaltered; the cyanophyte starch-making machinery was lost but that ofthe host was retained. In the second line, phycobilins (pb) were replaced by chlorophyll b and the thylakoids consequently became stacked; this line diverged early by the loss of the phagosome membrane (-p) to produce the Verdiplantae on the one hand, and the loss of the starch-making machinery of both host and symbiont, on the other, to produce the Euglenozoa; retention of the phagosome membrane in the euglenozoan line led to the modification of the mitochondrial protein transport system and the origin of disc-shaped cristae (dc). In the third line, the phycobilins were moved inside the thylakoids (pbi), which thus became able to stack, chlorophyll c2 evolved and the cyanophyte starchmaking machinery was lost (C) but that of the host was retained, and the mitochondrial cristae became tubular (tc). This line also forked: one branch lost phycobilins ( - pb) to yield the Dinozoa (a very few of which also lost the phagosome membrane (-PI)), while the other lost the phagosome membrane before or during its incorporation by a nonphotosynthetic phagotroph (D) to form the Cryptophyta. The cryptophyte host (D), like the host (A) that engulfed the cyanophyte had a pellicle, trichocysts, and a gullet, but differed in having tubular rather than non-tubular mastigonemes on its two anterior cilia. These major events probably occurred very rapidly-perhaps even within ten years of the primary endosymbiotic uptake of a cyanophyte by the first biciliated host ( A ) . mastigonemes: it would have had a gullet near its two anterior cilia, a pellicle, and trichocysts like those of the Prasinophyceae (Morrall & Greenwood, 1980). The carotenoid and xanthophyll composition of the red algae, whose plastids are accepted as being derived from endosymbiotic cyanophytes, has at least as many features in common with those of the other eukaryote algae as with those of cyanophytes (Dougherty & Allen, 1960) which supports a common origin for all eukaryote plastids. 904 T. CAVALIER-SMITH The phylogeny shown in Fig. 2 is much more economical than other recent ones that postulate five to seven separate endosymbioses (Dodge, 1979; Cavalier-Smith, 1981a; Whatley, 1981), or earlier ones that postulated as many as 20 (Sagan, 1967). It assumes that only one prokaryote was ever converted into a plastid. However, it differs radically from earlier schemes that derive all plastids from a common ancestor, in that it argues that the transitions between the major types occurred not between well-developed plastids with a long evolutionary history, but during the actual process of conversion of a cyanophyte into, not one, but several different plastid types. In the present view, the modification of an endosymbiont is seen as the creator of plastid diversity: whereas, in the earlier idea of multiple symbiosis of different procaryotes it simply incorporates pre-existing prokaryote diversity (whose origin remains entirely unexplained) into the eukaryote cell (Sagan, 1967; Raven, 1970). This rapid origin of plastids from a single symbiont, and the concomitant changes in mitochondria, is one of the most important examples of rapid quantum evolution (Simpson, 1953; Stanley, 1979),since the origin of eukaryotes themselves (Cavalier-Smith, 1975, 1981a),and the origin of cilia and phagotrophy (CavalierSmith, 1982). TESTING THE THEORY The best test will be to compare the detailed organization of plastid DNA in the six kingdoms. There is already evidence of this kind bearing on the relationship between the euglenoid and verdiplant plastids. Euglenoid plastid DNA has three rRNA genes arranged in a tandem array as in bacteria. Verdiplant plastid DNA has only two rRNA genes, usually arranged as inverted repeats as in Chlamydomonas (Gillham & Boynton, 1981). Since the inverted arrangement must be derived and the tandem arrangement in Euglena the ancestral one, this conflicts with the theory that Euglena plastids are derived by symbiosis from chlorophyte algae (Gibbs, 1978, 1981) or plastids (Whatley, 1981), but is entirely consistent with my proposal that they are both derived from a single endosymbiotic cyanophyte by the loss of phycobilins and the evolution of chlorophyll b and thylakoid stacking. Comparisons with biliphyte (both glaucophyte and rhodophyte), chromophyte, cryptophyte, and dinozoan plastid DNA should eventually decide unambiguously whether the hypothesis of a single, primary endoxymbiotic event involving a cyanophyte is correct. Studies of plastid DNA in these groups is badly needed; it has been isolated only from two such species, the glaucophyte Cyanophora (Loffelhardt, Mucke & Bohnert, 1980) and the chromophyte (diatom) Olisthodiscus (Aldrich & Cattolico, 1979), both of which have circular DNA in the same general size range as the green algal plastid DNA; but there is not yet data to support or refute the idea of an independent origin. My theory of the origin of dinozoan and cryptophyte plastids predicts that a dinozoan with phycobilins and chlorophyll c, once existed. Perhaps some still do: electron microscopy and pigment analysis are needed of the few Dinozoa with blue pigments (Taylor, 1980, 1981) to see if any have plastids like cryptophytes. REFERENCES AITKEN, A. & STANIER, R. Y., 1979. Characterisation of peptidoglycan from the cyanelles of Cyanophora paradoxa. Journal of General Murobiology, 112: 219-223. T H E ORIGINS OF PLASTIDS 305 ALDRICH, J. & CATTOLICO, R., 1979. Characterisation of the chloroplast genome of the marine alga, Olislhodiscus luteus. journal of Supramolecular Structure (Suppl. 3), p. 142. BLOBEL, G., WALTER, P., CHANG, C. N., GOLDMAN, B. M., ERICKSON, A. H. & LINGAPPA, V. R., 1979. Translocation of proteins across membranes: the signal hypothesis and beyond. Sjmposiafor thc Socicp of Experimental Biology, 33: %36. BRAUN, V. 1978. Structure-function relationships of the gram-negative bacterial cell envelope. Sjmposiwn ofthc Sociep for General Microbiology, 28: 11 1-138. BRUGEROLLE, G. & JOYON, L., 1975. etude cytologique ultrastructurale des genres P r o t C m m o ~et~ Karatomorpha (Zoomastigiphora Proteromonadinida Grass6 1952). Protutologica, I I : 5 3 - 5 6 . CAVALIER-SMITH, T., 1975. The origin of nuclei and of eukaryotic cells. Nature, 256: 463-468. CAVALIER-SMITH, T., 1977. Mitocondri e cloroplasti: un problema evolutivo. Scimra e Tcchnica, 77. Milan. Mondadori. CAVALIER-SMITH, T., 1978. The evolutionary origin and phylogeny of rnicrotubules, mitotic spindles and eukaryote flagella. Biosystems, 10: 93-1 14. CAVALIER-SMITH, T., 1980. Cell compartmentation and the origin of eukaryote membranous organelles. In W. Schwemmler & H. E. A. Schenk (Eds), Endocytobiology: Endosymbiosis and Cell Biology, a Synthesis of Recent Research: 893-916. Berlin: de Gruyter. CAVALIER-SMITH, T., 1981a, The origin and early evolution of the eukaryotic cell. Symposium ofthe Suciepf o r General Microbiology 32: 33 84. CAVALIER-SMITH, T., 1981b. Eukaryote kingdoms: seven or nine? BioSystems, II: 109-130. CAVALIER-SMITH, T., 1982. The evolutionary origin and phylogeny of eukaryote flagella. Symposia for the Societv of Experimental Biology,35: 467-495. CHIU, N., CHIU, A. & SUYAMA, Y., 1975. Native and imported transfer RNA in mitochondria. Journul of Molecular Biology, 99: 37-50. DAYHOFF, M. 0. & SCHWARTZ, R. M., 1980. Prokaryote evolution and the symbiotic origin of eukaryotes. In W. Schwemmler & H. E. A. Schenk (Eds), Endocytobiology: Endosymbiosisand Cell Biology: 53-83. Berlin: de Gru yter. DAYHOFF, M. 0. & SCHWARTZ, R. M., 1981. Evidence on the origin of eukaryotic mitochondria from protein and nucleic acid sequences. Annuls oJthe New York A c a h y of Sciences, 361: 92-103. DODGE, J. D., 1979. The phytoflagellates: fine structure and phylogeny. In M. Levandowsky & S . H. Hutner (Eds), Biochmisty and Physiology ofProtozoa, 2nd ed., Vol. I : 7-57. New York: Academic Press. DOUGHERTY, E. C. & ALLEN, M. B., 1960. Is pigmentation a clue to protistan phylogeny? I n M . B. Allen (Ed.) Comparative Biochemistry of Photorcactiuc Systems: 127-144. New York: Academic Press. ECHLIN, P., 1966. The cyanophytic origin of higher plant chloroplasts. Brit. Pbcofoguaf Bulletin, 3: 15&151. FREDERICK, J. F., 1981. The biosynthesis of storage glycan in prokaryotic and eukaryotic algae. A ~ M of~ thc s .New York Academy of Science, 361: 426-434. GIBBS, S. P., 1970. The comparative ultrastructure of the algal chloroplast. Annals ofthe Ncw York Acadmy of Science, 175: 453473. GIBBS, S. P., 1978. The chloroplasts of Euglena may have evolved from symbiotic green algae. Canadian 30uml o j Botany, 56: 2883-2889. GIBBS, S. P., 1981. Chloroplasts ofsome groups may have evolved from endosymbiotic eukaryotic algae. Annals of the Neul York Acadmy of Science, 36: 193-207. GIBBS, S. P. & GILLOTT, M. A,, 1980. Has the chloroplast of cryptomonads evolved from an eukaryotic symbiont? In W. Schwemmler & H. E. A. Schenk (Eds), Endocytobiology: Endosymbiosis and Ccll Biology: 737-743. Berlin: de Gruyter. GILLHAM, N. W. & BOYNTON, J. E., 1981. Evolution oforganelle genomes and protein-synthesising systems. Annals of the .Vew York Academy of Science, 361: 20-40. GREENWOOD, A. D., GRIFFITHS, H. B. & SANTORE, U. J., 1977. Chloroplasts and cell compartments in cryptophyceae. British Phycologicol Journal, 12: 1 19. HEATH, I. B., 1980. Variant mitoses in lower eukaryotes: indicators of the evolution of mitosis. Inkrnatwnaf Review of Cytolou, 64: 1-80. HERDMAN, M. & STANIER, R . Y., 1977. The cyanelle: chloroplast or endosymbiotic prokaryote? F E M S Letters, I: 7-12. KIES, L., 1979. Zur systematischen Einordnung von Cvanophora paradoxa, Gloeochaek wittruckiuna und Glauco<vstis nostochinearum. Rerichte Deutschtn Botanischcn Gesellschaf?, 92: 445454. KIES, L. 1980. Morphology and systematic position of some endocyanomes. I n W. Schwemmler & H. E. A. Schenk (Eds), Endocvtobiology: Endoymbiosis and Cell Biology: 7-19. Berlin: de Gruyter. KREMER, B. P., FEIGE, G. B. & SCHNEIDER, H. A. W., 1978. A new proposal for the systematic position of Cyanidiwn caldariwn. .Natunoissenschafh, 65: 157. KREMER, B. P., KIES L. & ROSTAMI-RABET, A,, 1979. Photosynthetic performance of cyanelles in the endocyanomes Cyanophora. Glaucosphaera, G'loeochuete. and Glauco&. zeitschriji fur PJanzenphvsiologie, 92: 303 317. LEE, R. E., 1977. Evolution of algal flagellates with chloroplast endoplasmic reticulum from the cilates. South African Journal of Science, 73: 179-182. 16 306 '1, CAVALIER-SMITH I.EED,AI.E, G. 1978. Phylogenetic criteria i n euglenoid flagellates, HioJ:vstems. 10: 183 187. LEWIN, R. A,, 1981. Prochloron and the theory of symbiogenesis. Annals o f f h e N e w York Academy ofScience, X I : 325-328. LOFFELHARDT, L. W., MUCKE, H. & BOHNERT, H. J., 1980. Cyanelle DNA from cvanophora Paradoxa: analogies to chloroplast DNA. In W. Schwemmler & H . E. A. Schenk (Eds). Endoqhhiolugy: Gdo.ymhiosis and ctll Biology: 523-530. Berlin: de Gruyter. MACCOLL, R. & BERNS, D. S., 1979. Evolution of the biliproteins. Trends in Biochemical Science, 4 : 44 47. MARGULIS, L., 1970. Origin ofeukaryofic cells. New Haven: Yale University Press. MERESCHKOWSKY, C., 1905. u h e r Natur und Unprung der Chromatophoren im Pflanzenreiche Biologisches h t r a l h l a f f , 2.5: 593404. MERESCHKOWSKY, C., 1910. Theorie der zwei Plasmaarten als Grundlage der Symbiogenesis, einer neuen Lehre von der Entstehung der Organismen. Rio/o.~ischesGntralblaff,30: 278 303, 32 1-347, '353 367. MOESTRUP, O., 1978. On the phylogenetic validity of the flagellar apparatus in green algae and other chlorophyll a and b containing plants. RioSysfems, 10; 117-144. MORRALL, S. & GREENWOOD, A. D., 1980.A comparison ofthc periodic substructure of the trichocystsof the Ckyptophyceae and Prasinophyceae. BioSysfems, 12: 7 1 83. NEUPERT, W. & SCHATZ, G., 1981. How proteins are transported into mitochondria. Trends in Biochemical Scierue. 6: 1 4. RAVEN, P. H., 1970. A multiple origin for plastids and mitochondria. Science, 169: 641 -646. RIS, H., 1961. Ultrastructure and molecular organisation of genetic systems. Canadian Journal of Cytology, 3: 95 120. SAGAN, L., 1967. On the origin of mitosing cells. Journal of Theorefical Biology, 14: 225~~274. SANTORE, U. J. & GREENWOOD, A. D., 1977. The mitochondria1 complex in Cryptophyceae. Archivfuer Mikrobiologie, 112: 207 218. W H I M P E R , A. F. W., 1883. u h e r die Entwicklung der Chlorophyll Korner und Farb-Korner. Hofanisrht <dung, 4 / : 105 114. SCHWARTZ, R. M. & DAYHOFF, M. D., 1981. Chloroplast origins: inferences from protein and nucleic acid sequences. Annals of fhe New York Academy of Science, .%I: 260-272. SECKBACH, J., HAMMERMAN, I. S. & HANANIA, J., 1981. Ultrastructural Studies of Cyanidium caldarium: contribution to phylogenesis. Annals if fhu Nuw Tord- Aradem-v of Science, 361: 409 424. SKUJA, H., 1954. Glaucophyta. In H. Melchoir & E. Wrdrrmm (Eds) '4. En@, Lyyl/nbuJ der P'fnzrr~arnilien,21, Aufl., Bd.1.: 56 -57. Berlin: Borntraeger. SIMPSON, G . G., 1953. The Major Feafures of Euolufion. New York: Columbia University Press. STANIER, R. Y., 1974. The origins of photosynthesis in eukaryotes. Symposium of fhe Society Jor General Microbiology, 24: 219-240. STANLEY, S. M., 1979. hlarrocvolufion: Pattern and P r o m s . San Francisco: Freeman. STEWART, K. D. & MA'T'TOX, K. R., 1975. Comparative cytology, evolution, and classification of the green algae with some consideration of the origin ofother organisms with chlorophylls a and b. Rofanual Rerjiew, 41: 104- 145. STEWART, K. D. & MATTOX, K. R., 1978. Structural evolution in the flagellated cells of green algae and land plants. RioSysfems, lo: 145-152. STEWART, K . D.& M A I T O X , K. R., 1980. Phylogeny ofphytoflagellates. In E. R. Cox (Ed.) Phyfojlagrllates: 433 462. New York: Elsevier. TAYLOR, D. L., 1970. Chloroplasts a s symbiotic organelles. Interaafional Reuiew of Crtology. 27: 29 64. TAYLOR, F. J . R., 1976. Flagellate phylogeny: i~ study in conflirts. Journal ofPru/u;ou/ogv. 2.7: 28 40. TAYLOR, F. J . R., 1978. Problems i n the development of ;in explicit hypothrtiral phylogeny of the lowcr eukaryotes. BioSysfems, 10: 67-89. TAYLOR, F. J. R., 1980. O n dinoflagellate evolution. BiosySfems, 13: 65-108. 'IAYI,OR, F. J . R., 1981. Annals o f f h t ,Veu~Y'ork Arndnr9~oJScitnce. 361: 165. TRENCH, R . K., 1981. Chloroplasts: presumptive iind de farfo organelles. Annols uf the .4'ew Jbrd .Iradnflv ? / Science, 361: 341-355. LJZZELL, T. & SPOLSKY, C., 1981. Two data sets: alternative explanations and interpretations. .4nnals o f f h e .Vew York Academy of Science, X I : 481499. WELLBURN, A. R. & HAMPP, R., 1980. The interrelationship between mitochondria and plastids during ~ z ~Crll /liidogy, Vol. 1 : greening. In W. Schwemmler & H. E. A. Schrnk (Eds),Etidocytobiology: ~ n d o j m b i i i ond 825 838. Berlin: de Gruyter. WHATLEY, J. M., 1981. Chloroplast evolution-ancient and modern. Annals o f f h e New York Academy ofSczence, 361: 154 164. WHATLEY, J. M., JOHN, P. P. & WHATLEY, F. R., 1979. From extrarellular to intracellular: the establishment of mitochondria and chloroplasts. Proceedings of the Royal Society of I.ondon 8.204: 165 187. , Vufu added in / J ~ w /Several : o f the tiixa here callcd kingdoms iirr probably better trcatcd as subkingdoms, ;IS in my simplified 6-kingdom cl;issilic;ition (C;rvalier-Smir.h, 1981b). 'Ihis docs not alter any of thr arguiiic'iits prescntcd i n this paper.
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