UvA-DARE (Digital Academic Repository) ABC transporters in Arthropods: genomic comparison and role in insecticide transport and resistance Dermauw, W.; Van Leeuwen, T.B.S. Published in: Insect Biochemistry and Molecular Biology DOI: 10.1016/j.ibmb.2013.11.001 Link to publication Citation for published version (APA): Dermauw, W., & Van Leeuwen, T. (2014). ABC transporters in Arthropods: genomic comparison and role in insecticide transport and resistance. Insect Biochemistry and Molecular Biology, 45, 89-110. DOI: 10.1016/j.ibmb.2013.11.001 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). 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UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl) Download date: 16 Jun 2017 Insect Biochemistry and Molecular Biology 45 (2014) 89e110 Contents lists available at ScienceDirect Insect Biochemistry and Molecular Biology journal homepage: www.elsevier.com/locate/ibmb Review The ABC gene family in arthropods: Comparative genomics and role in insecticide transport and resistance Wannes Dermauw a, **, Thomas Van Leeuwen a, b, * a b Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands a r t i c l e i n f o a b s t r a c t Article history: Received 4 November 2013 Received in revised form 6 November 2013 Accepted 6 November 2013 About a 100 years ago, the Drosophila white mutant marked the birth of Drosophila genetics. The white gene turned out to encode the first well studied ABC transporter in arthropods. The ABC gene family is now recognized as one of the largest transporter families in all kingdoms of life. The majority of ABC proteins function as primary-active transporters that bind and hydrolyze ATP while transporting a large diversity of substrates across lipid membranes. Although extremely well studied in vertebrates for their role in drug resistance, less is known about the role of this family in the transport of endogenous and exogenous substances in arthropods. The ABC families of five insect species, a crustacean and a chelicerate have been annotated in some detail. We conducted a thorough phylogenetic analysis of the seven arthropod and human ABC protein subfamilies, to infer orthologous relationships that might suggest conserved function. Most orthologous relationships were found in the ABCB half transporter, ABCD, ABCE and ABCF subfamilies, but specific expansions within species and lineages are frequently observed and discussed. We next surveyed the role of ABC transporters in the transport of xenobiotics/plant allelochemicals and their involvement in insecticide resistance. The involvement of ABC transporters in xenobiotic resistance in arthropods is historically not well documented, but an increasing number of studies using unbiased differential gene expression analysis now points to their importance. We give an overview of methods that can be used to link ABC transporters to resistance. ABC proteins have also recently been implicated in the mode of action and resistance to Bt toxins in Lepidoptera. Given the enormous interest in Bt toxicology in transgenic crops, such findings will provide an impetus to further reveal the role of ABC transporters in arthropods. Ó 2014 The Authors. Published by Elsevier Ltd. Open access under CC BY-NC-ND license. Keywords: Traffic ATPases Primary carriers Allelochemicals Multidrug resistance Detoxification Phase III Arthropoda P-gp MDR MRP BCRP SUR Bt toxins 1. Introduction All cells and organelles are separated from the external milieu by lipid membranes and need transporters to traffic a wide diversity of compounds across these membranes (Higgins, 1992). The importance of membrane transport is illustrated by the fact that in Escherichia coli and humans about 10% and 4% of the total number of genes encode transport-related proteins (Blattner et al., 1997; * Corresponding author. Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B9000 Ghent, Belgium. Tel.: þ32 92646154. ** Corresponding author. Tel.: þ32 92646155. E-mail addresses: [email protected] (W. Dermauw), thomas. [email protected] (T. Van Leeuwen). Hediger et al., 2013). Among the latter, the ABC (ATP-binding cassette)1 protein family is one of the largest transporter families and is present in all kingdoms of life. The majority of these ABC proteins function as primary-active transporters, requiring the binding and hydrolysis of ATP to transport substrates across lipid membranes. A functional ABC transporter, previously also referred to as traffic ATPase, consists of two cytosolic nucleotide-binding domains (NBDs) that bind and hydrolyze ATP, and two integral transmembrane domains (TMDs) (Fig. 1A). The NBD domain contains several conserved sequences like a Walker A and Walker B motif, Qloop, H-motif and the ABC-signature motif (LSGGQ-motif). The transmembrane domains consist of 5e6 transmembrane helices and 1 ABC, ATP-binding cassette; NBD, nucleotide-binding domain; TMD, transmembrane domain; FT, full transporter; HT, half transporter; BBB, bloodebrain barrier; MRPs, multidrug-resistance associated proteins; MDR, multidrug-resistance protein, P-gp, P-glycoprotein; SUR, sulfonylurea receptor; TMR, tetramethylrosamine; Trp, Tryptophan; ML, macrocyclic lactone; OP, organophosphates; BPU, benzoylphenylureas. 0965-1748 Ó 2014 The Authors. Published by Elsevier Ltd. Open access under CC BY-NC-ND license. http://dx.doi.org/10.1016/j.ibmb.2013.11.001 90 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 A 2 TMD1 TMD2 2 OUT 2 IN 3 4 5 8 6 9 10 11 12 NBD NBD NH2 COOH B step I step II step III step IV N BD N BD NBD NBD ATP ATP NBD ATP ATP NBD NBD IN NBD OUT Fig. 1. ABC full transporter structure and the ATP-switch model for the transport cycle of an ABC transporter (exporter-type) A) Typical structure of an ABC full transporter containing two TMDs, TMD1 (blue) and TMD2 (yellow) each containing 6 transmembrane (TM) segments, and two NBDs, NBD1 (red) and NBD2 (green). In the case of “long” MRPs an additional TMD (TMD0) is present at the N-terminus (Deeley et al., 2006). ABC half transporters have only one TMD and one NBD and need to homo or heterodimerize to form a functional unit. B) The ATP-switch mechanism (Higgins and Linton, 2004; Linton and Higgins, 2007). The transport cycle is started by binding of a substrate (purple cross) to a highaffinity pocket formed by the TMDs (blue and yellow pentagon). Subsequently, a conformational change is transmitted to the NBDs (green and red), facilitating ATP (orange oval) binding and closed NBD-dimer formation. The closed NBD dimer induces on its turn a major conformational change in the TMDs, with TMDs rotating and opening toward the outside, initiating substrate translocation (step II). ATP hydrolysis initiates dissolution of the closed NBD dimer, resulting in further conformational changes in the TMDs (step III). Finally, phosphate and ADP release restores the transporter to the open NBD-dimer conformation (step IV). provide substrate specificity. The four domains of a functional transporter can be present in one protein (Full Transporter, FT) or spread over multiple proteins, for example one NBD and TMD per protein (half transporter, HT). In the case of the latter, ABC proteins need to homo or heterodimerize to form a functional ABC transporter (Higgins, 1992; Higgins and Linton, 2004; Rees et al., 2009). Based on the sequence similarity of the NBDs, the ABC protein family has been divided into eight subfamilies, denoted by the letters AeH (Fig. 2). Of particular note, the ABCH subfamily has at present only been identified in arthropod genomes and in zebrafish (Dean et al. 2001; Popovic et al., 2010). Eukaryotic ABC transporters mediate the efflux of compounds from the cytoplasm to the outside of the cell or into organelles, while bacterial ABC transporters can also facilitate import of substances. However, not all ABC proteins do play a role in transport. In the human ABC protein family, for example, ABC proteins acting as ion channel, receptor or with a role in translation, have been characterized (Dean et al., 2001; Rees et al., 2009). Currently, the ATP-switch mechanism is the favored model for the transport cycle of ABC transporters (George and Jones, 2012; Higgins and Linton, 2004; Linton and Higgins, 2007). In this model, the transport cycle is started by binding of substrates to the TMDs. Subsequently a conformational change is transmitted to the NBDs, facilitating ATP binding and closed NBD-dimer formation. The closed NBD dimer in turn induces a major conformational change in the TMDs, with TMDs rotating and opening toward the outside, initiating substrate translocation. In a final step, ATP is hydrolyzed to initiate transition of the closed NBD dimer to the open NBD dimer and to return the transporter to its basal state (Fig. 1B). ABCtransporters traffic an array of substrates covering amino-acids, sugars, lipids, inorganic ions, polysaccharides, metals, peptides, toxic metabolites and drugs. Because of their ability to transport drugs, many human ABC members are also important players in multidrug resistance of cancer cells against chemotherapeutics: the multidrugresistance proteins (MDRs) or P-glycoproteins (P-gps) belonging to the ABCB subfamily, the multidrug-resistance associated proteins (MRPs) from the ABCC subfamily and the breast cancer resistance protein (BCRP, ABCG subfamily member). The P-gp ABCB1 was in fact identified as the first ABC transporter to be overexpressed in multidrug resistant tumor cell lines (Kartner et al., 1985; Riordan et al., 1985). Compared to bacterial, nematode and human ABC transporters, the knowledge about arthropod ABC transporters is still limited. At present, the ABC families of seven arthropod species, spanning more than 400 arthropod ABC proteins, have been studied in detail (Broehan et al. 2013; Dean et al., 2001; Dermauw et al., 2013a; Liu et al., 2011; Roth et al., 2003; Sturm et al., 2009; Xie et al., 2012). Nevertheless, the precise function of only a few arthropod transporters has been unveiled. Drosophila melanogaster white and its insect orthologues are probably the most thoroughly characterized ABC transporters and are involved in the uptake of pigment precursors in the developing eye (Ewart and Howells, 1998). We performed a thorough phylogenetic analysis with a dataset of well-annotated arthropod and human ABC transporters to infer orthologous relationships, which in turn can suggest the role and function of arthropod proteins. We further focus on biochemical and molecular methods that can be deployed to study arthropod ABC transporters, and give an overview of their documented role in xenobiotic transport and resistance. 2. Comparison of ABC subfamilies in arthropods Despite the fact that more than 60 arthropod genomes have been sequenced, the ABC protein family was annotated and studied in detail in only seven species: the dipterans D. melanogaster and Anopheles gambiae, the honeybee Apis mellifera, the silk moth W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 91 Fig. 2. A schematic tree depicting the phylogenetic relationships between ABC subfamilies. NBDs of ABC proteins belonging to different subfamilies as defined by Dermauw et al. (2013a) were used in a ML analysis. Similar to previous studies (e.g. Liu et al., 2011) C-terminal NBDs of the ABCC subfamily clustered together with NBDs of the ABCB subfamily. Bombyx mori, the flour beetle Tribolium castaneum, the spider mite Tetranychus urticae and the waterflea Daphnia pulex (Broehan et al., 2013; Dean et al., 2001; Dermauw et al., 2013a; Liu et al., 2011; Roth et al., 2003; Sturm et al., 2009; Xie et al., 2012) (Table 1). Among these species, T. urticae has the largest number of ABC genes (103) followed by T. castaneum (73) and D. pulex (65), while A. mellifera has only 41 ABC genes (Table 1). The large number of ABC genes in T. urticae is mainly due to lineage-specific expansions of ABCC, ABCG and ABCH genes, while in T. castaneum and D. pulex lineagespecific expansions of ABCC and ABCH genes have been documented (Broehan et al., 2013; Dermauw et al., 2013a; Sturm et al., 2009) (Table 1). In order to infer orthologous relationships between arthropod ABC proteins, we performed a maximum likelihood analysis for each ABC subclass using complete ABC protein sequences from Homo sapiens and the before mentioned arthropod species (for details see Supplementary Text). 2.1. The ABCA family Phylogenetic analysis of the ABCA subfamily revealed a clear orthologous relationship between D. melanogaster CG31731, A. gambiae AGAP001523, T. castaneum TcABCA-7 and TcABCA-UA, A. mellifera AmABCA2 and B. mori BGIBMGA004187/ BGIBMGA004188 (Supplementary Fig. 1, Table 2). This group of insect ABCA FTs cluster together with high bootstrap support with 7 ABCA FTs of T. urticae. Except for CG31731, reported to be downregulated in the salivary glands of an E93 mutant of D. melanogaster (Dutta, 2008), no information is available on the function of these arthropod ABCA transporters. Other orthologous relationships were found between A. gambiae AGAP010416, A. mellifera AmABCA3, T. castaneum TcABCA-6A, B. mori BGIBMGA012789 and D. pulex Dappudraft_346971 and human ABCA5, 6, 8e10 and between A. gambiae AGAP010582, D. melanogaster CG34120, Table 1 Gene numbers in ABC subfamilies of H. sapiens and seven arthropod species.a ABC subfamily H. sapiens D. melanogaster A. gambiae T. castaneum A. melliferab B. moric D. pulex T. urticae A B FT B HT C D E F G H TOTAL 12 4 7 12 4 1 3 5 0 48 10 4 4 14 2 1 3 15 3 56 9 1 4 13 2 1 3 16 3 52 10 2 4 35 2 1 3 13 3 73 3 1 4 9 2 1 3 15 3 41 9 5 4 15 2 1 3 13 3 55 4 2 5 7 3 1 4 24 15 65 9 2 2 39 2 1 3 23 22 103 a Numbers were derived from Sturm et al. (2009), Liu et al. (2011), Xie et al. (2012), Broehan et al. (2013) and Dermauw et al. (2013a). AmABCB5 and AmABCB6 from Liu et al. (2011) were not taken into account as they were incomplete (less than 270 AA), their respective genes were located on unplaced scaffolds and had best BLASTp hits (E-value e100) with ABC transporters of bacteria. c The number of B. mori ABC genes for each ABC subfamily represents the highest number of B. mori genes found for each ABC subfamily in either Liu et al. (2011) or Xie et al. (2012), some B. mori ABC genes might be incomplete and might possibly be combined into one gene (e.g. BGIBMGA007792/BGIBMGA007793 (Atsumi et al., 2012), BGIBMGA007784/BGIBMGA007785 and BGIBMGA4187/BGIBMGA04188). b 92 Table 2 Orthologous relationships between ABC proteins of Arthropoda and H. sapiens.e Dma Ag Tcb Am Bm Dp Tu Hs Function? Reference ABCA e CG34120 AGAP010416 AGAP010582 TcABCA-6A e AmABCA3 AmABCA1 BGIBMGA012789 BGIBMGA009503 Dappudraft_346971 e e tetur27g01890 hABCA5/6/8-10 hABCA12/13 Wenzel et al., 2007, Liu and Lehmann 2008; Akiyama, 2013 CG31731 AGAP001523 TcABCA-7A TcABCA-UA AmABCA2 BGIBMGA004187 BGIBMGA004188 e (7)c e Lipid transportd? ABCA12 is a keratinocyte lipid transporterd; GAL4 changes CG34120 expression, independent of UAS CG31731 is downregulated in E93 mutants ABCB HT CG7955 CG4225 CG1824 CG3156 AGAP006364 AGAP002278 AGAP006273 AGAP002717 TcABCB-5A TcABCB-6A TcABCB-7A TcABCB-4A AmABCB1 AmABCB2 AmABCB7 AmABCB3 BGIBMGA012743 BGIBMGA005473 BGIBMGA004142 BGIBMGA008523 Dappudraft_347270 Dappudraft_347268 Dappudraft_347266 Dappudraft_347275 Dappudraft_347276 tetur32g01330 e tetur17g02000 e hABCB7 hABCB6 hABCB8 hABCB10 Mitochondrial ABC transporters with roles in biogenesis of cytosolic ironesulfur clusters, heme biosynthesis, iron homeostasis, protection against oxidative stressd; CG4255 is involved in cadmium tolerance; RNAi silencing of TcABCB-5A results in severe developmental defects during pupation and abortive pupaladult molting; role in pesticide resistance? Zutz et al., 2009; Sooksa-Nguan et al., 2009; Bariami et al., 2012; Broehan et al., 2013 ABCC sur AGAP009799 e AmABCC2 BGIBMGA006882 Dappudraft_442500 tetur11g05990 Subunit of the ATP-sensitive potassium channel Nasonkin et al., 1999 CG6214 (dMRP) CG7806 AGAP009835 AGAP008437 AGAP007917 TcABCC-9A AmABCC9 (3)c Dappudraft_347281 (23)c AmABCC5 BGIBMGA010636 Dappudraft_347323 tetur03g07840 Drosophila CG6214 is capable of transporting several substrates of its human orthologs Transport of taxanesd; CG7806 is upregulated 1.56-fold in D. melanogaster upon exposure to ecdysone; conserved function in metazoa? Tarnay et al., 2004; Szeri et al., 2009 TcABCC-4A hABBC8/9 (SUR1/2) hABCC1/2/3/6 (MRP1, 2, 3 and 6) hABCC10 (MRP7) AGAP002071 AGAP000440 TcABCD-6A TcABCD-9A AmABCD1 AmABCD2 BGIBMGA004616 BGIBMGA012688 Dappudraft_347330 Dappudraft_347326 tetur05g06640 tetur35g01360 hABCD1/2 hABCD3 Import of long branched chain acyl-coA into peroxisomed Morita and Imanaka, 2012 AGAP002182 TcABCE-3A AmABCE1 BGIBMGA010129 Dappudraft_189585 tetur30g0140 hABCE1 Essential role in ribosome biogenesis and translation regulation Andersen and Leevers, 2007 AGAP012249 TcABCF-2A AmABCF1 BGIBMGA007869 tetur29g00620 hABCF1 (ABC50) Essential role in translation regulationd Paytubi et al., 2009 CG9281 CG9330 ABCG CG3327 (E23) AGAP002693 AGAP012005 TcABCF-5A TcABCF-9A AmABCF3 AmABCF2 BGIBMGA002004 BGIBMGA006964 Dappudraft_347357 Dappudraft_347363 Dappudraft_304799 Dappudraft_347354 tetur20g02610 tetur32g00490 hABCF2 hABCF3 e TcABCG-8A AmABCG1 e Dappudraft_347416 tetur17g02510 e Hock et al., 2000; Broehan et al., 2013, White AGAP000553 TcABCG-9B AmABCG2 BGIBMGA002922 (9)c (9)c e Brown AGAP007655 e e e TcABCG-9A Dappudraft_347393 e e CG11069 CG31121 Atet AGAP000506 AGAP001333 AGAP002051 AGAP002050 AGAP001858 BGIBMGA002581 BGIBMGA002712 BGIBMGA002924 e Scarlet AmABCG11 AMABCG12 AmABCG10 TcABCG-9D TcABCG-9C TcABCG-4D AmABCG15 AmABCG13 AmABCG3 BGIBMGA000472 BGIBMGA000220 BGIBMGA005094 Dappudraft_300887 Dappudraft_258299 Dappudraft_347444 tetur01g16290 tetur01g16280 e hABCG5 hABCG8 hABCG1/4 CG3164 AGAP009850 TcABCG-4C AmABCG5 BGIBMGA005202 e e e 20E induced ABC transporter, injection of TcABCG-8A dsRNA results in molting defects and developmental arrest Best characterized ABC transporter: transport of eye pigment precursors, role in courtship behavior, uptake of uric acid, transport of cyclic GMP and transport of biogenic amines. Transport of eye pigment precursor; transport of biogenic amines Transport of eye pigment precursor;transport of biogenic amines Role in biliary excretiond Role in biliary excretiond ABC transporter expressed in trachea of D. melanogaster CG3164 knockdown line results in lethal phenotype in pupa; essential in D. melanogaster lipid metabolism; transport of lipids from epidermal cells to the cuticle in T. castaneum; injection of TcABCG-4C dsRNA in young females Beckstead et al., 2007; HopperBorge et al., 2009 Zhang and Odenwald, 1995; Ewart and Howells 1998; Borycz et al., 2008; Evans et al., 2008; Komoto et al., 2009; Broehan et al., 2013 Ewart and Howells 1998, Borycz et al., 2008 Ewart and Howells 1998, Borycz et al., 2008, Tatematsu et al., 2011 Graf et al., 2003 Graf et al., 2003 Kuwana et al., 1996 Ohmann 2012, Broehan et al., 2013, Liu et al., 2011 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 ABCD CG2316 CG12703 ABCE CG5651 (pixie) ABCF CG1703 Dutta, 2008 ? e e e BGIBMGA010825 AmABCH2 TcABCH-9A AGAP002060 CG11147 Species abbreviations: Dm, D. melanogaster, Ag, A. gambiae, Tc, T. castaneum, Am, A. mellifera, Bm, B. mori, Dp, D. pulex, Tu, T. urticae, Hs, H. sapiens. b Broehan et al. (2013)-naming. c Number of orthologues that has been found in this arthropod species, gene names of orthologues can be found in the phylogenetic analysis of the corresponding ABC family. d Function of human ortholog. e Orthologous genes should 1) at least be present in four out of five insect species or five out of seven arthropod species and 2) be clustered with a bootstrap value of at least 80%; one-to-one orthologues in arthropods and H. sapiens are underlined. e e e BGIBMGA010760 AmABCH1 TcABCH-9C AGAP003680 CG9990 TcABCH-9B AGAP002638 ABCH CG33970 a Mummery-Widmer et al., 2009, Zhang et al., 2009, Broehan et al., 2013 e Qin et al., 2005 Upregulated in adult fruit flies after cold hardening Similar to CG3164/TcABCG-4C e e e BGIBMGA010726 e e e e e e BGIBMGA005203 BGIBMGA010557 BGIBMGA010555 AmABCG9 AmABCG8 AmABCG14 TcABCG-4B e TcABCG-4A e (5)c AGAP009464 CG4822 CG9664 CG17646 AmABCH3 Liu et al., 2011 Liu et al., 2011 Buchmann et al., 2007, Liu et al., 2011 Pedra et al., 2004, Ellis and Carney 2010 e e e e TcABCG-4F AGAP008889 CG31689 AmABCG6 e AGAP009463 CG5853 TcABCG-4G AmABCG4 BGIBMGA005226 e e reduces number of eggs and eggs fail to hatch; 20E induced ABC transporter in B. mori Downregulation of CG5853 following neuronal AP1 overexpression; 20E induced ABC transporter in B. mori CG31689 is overtranscribed in a D. melanogaster DDT-resistant line; downregulated in D. melanogaster male heads after mating 20E induced ABC transporter in B. mori 20E induced ABC transporter in B. mori Insertion of a engineered transposable Pelement (EP) upstream of CG17646 altered the triglyceride content of D. melanogaster; 20E induced ABC transporter in B. mori Etter et al., 2005, Liu et al., 2011 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 93 A. mellifera AmABCA1, B. mori BGIBMGA009503, T. urticae tetur27g01890 and human ABCA12 and 13 (see Supplementary Fig. 1). Little is known about the function of human ABCA5, 6, 8e 10 but several studies have suggested roles of these transporters in lipid transport (Wenzel et al., 2007). Human ABCA12 on the other hand has been thoroughly characterized and is known as a keratinocyte lipid transporter (Akiyama, 2013). The role of the arthropod orthologues of these human ABCAs is unknown, but they might play a role in lipid transport. Finally, we also identified a well-supported group of insect-specific ABCA proteins, containing lineage-specific expansions in B. mori, T. castaneum, D. melanogaster and A. gambiae (see Supplementary Fig. 1). To date, only one study has investigated the function of ABC proteins in this insect-specific ABCA group. Injection of dsRNA targeting TcABCA-9A or TcABCA-9B of T. castaneum resulted in 30% mortality during the pupaeadult molt and pupae and pharate adults showed severe wing defects and elytra shortening (Broehan et al., 2013). Future studies might confirm that this group of insect-specific ABCAs is involved in (wing) development. 2.2. The ABCB family The ABCB subfamily consists of half and full transporters (HTs and FTs, respectively, see above). The phylogenetic analysis of ABCB FTs, also referred to as P-gps, assigned H. sapiens, D. pulex, T. urticae and insects into separate clades, confirming an earlier hypothesis by Sturm et al. (2009) that this subfamily diversified through lineage-specific duplications (Fig. 3A). Within the insect ABCB FT clade, 2 main groups can be observed. In the first Drosophila mdr50 clusters with TcABCB-3A, TcABCB-3B and BGIBMGA007494, while in the second Drosophila mdr65, CG10226 and mdr49 cluster with A. gambiae AGAP005639, A. mellifera AmABCB4 and B. mori BGIBMGA009452, BGIBMGA000724, BGIBMGA000725 and BGIBMGA011228 (Fig. 3A). The ABCB FTs in D. melanogaster have been extensively studied as mdr65 is required for chemical protection of the fruit fly brain by creating a bloodebrain barrier (BBB) (Mayer et al., 2009) and mdr49 plays an essential role in germ cell migration (Ricardo and Lehmann, 2009). Furthermore, it was demonstrated that exposure of D. melanogaster flies to polycyclic aromatic hydrocarbons led to an induced ABCB FT/P-gp expression (Vaché et al., 2006, 2007). Chahine and O’Donnell (2009) revealed that D. melanogaster adult flies raised on a diet containing 0.1 mM of the antifolate drug methotrexate, showed a significant increased expression of mdr49, mdr50 and to a lesser extent mdr65, in both the Malpighian tubules and the gut. A recent study reported the interaction between P-gps and polyglutamine mediated pathogenesis in D. melanogaster. Using a D. melanogaster transgenic strain expressing repeats of glutamine, it was demonstrated that increased ABCB FT/P-gp levels reduces eye degeneration, while reduction of ABCB FT/P-gp levels resulted in an increase of the disease (Yadav and Tapadia, 2013). Interestingly, D. melanogaster and other arthropod ABCB FTs have also frequently been linked to insecticide transport and/or resistance ((Buss and Callaghan, 2008), this study, see Section 4). Contrary to ABCB FTs, clear orthologous relationships were identified among arthropod ABCB HTs (Fig. 3B). Human ABCB6e8 each have one ortholog in insects and D. pulex (Fig. 3B, Table 2) while one ortholog and two coorthologues (Dappudraft_347275 and Dappudraft_347276) of human ABCB10 were found in insects and D. pulex, respectively. Of particular note, two previously annotated ABCB HTs of A. mellifera (AmABCB5 and AmABCB6 (Liu et al., 2011)) were not included in our analysis as they were incomplete (less than 270 AA), their respective genes were located on unplaced scaffolds and had best BLASTp hits (E-value e100) with ABC transporters of bacteria, 94 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 A B 7 Fig. 3. Phylogenetic analysis of ABCB full and half transporters of H. sapiens and seven arthropod species. A) ABCB full transporters, B) ABCB half transporters. For procedure and details of phylogenetic analysis see Supplementary Text. Color and shape codes are as follows: blue diamond, D. melanogaster, red diamond, A. gambiae, brown diamond, T. castaneum, green diamond, B. mori, yellow diamond, A. mellifera, purple square, D. pulex, gray triangle, T. urticae and black circle, H. sapiens. The scale bar represents in A) 0.2 and in B) 0.5 amino-acid substitutions per site. potentially indicating contamination (data not shown). Contrary to insects and D. pulex, only two orthologues of human ABCB HTs (ABCB7 and ABCB8) were identified in T. urticae. Finally, no arthropod orthologues of human ABCB2 and ABCB3, both involved in antigen processing (Trowsdale et al., 1990), and ABCB9 were identified in our evolutionary analysis (Fig. 3, Table 2). The group of evolutionary conserved ABCB HTs (orthologues of human ABCB6e 8 and 10) is known as mitochondrial ABC transporters with roles in the biogenesis of cytosolic ironesulfur clusters, heme biosynthesis, iron homeostasis and protection against oxidative stress (Zutz et al., 2009). It was suggested recently that human ABCB6 is located in other cellular compartments than the mitochondria, but the precise identity, substrate specificity and functionality has not yet been well determined (Chavan et al., 2013). Hardly any functional information is available on the function of arthropod orthologues of human ABCB HTs. Sooksa-Nguan et al. (2009) showed through heterologous expression in Schizosaccharomyces pombe that the D. melanogaster ortholog of human ABCB6, CG4225 also known as D. melanogaster heavy metal tolerance factor 1 (DmHMT-1), could confer resistance against cadmium. CG7955 was downregulated in D. melanogaster lines selected for increased resistance to chill coma stress (Telonis-Scott et al., 2009). On the other hand, Broehan et al. (2013) found that injection of TcABCB-5A dsRNA into pre-pupae of T. castaneum resulted in 1) severe developmental defects during pupaeadult molt causing lethality and 2) sterile females with ovaries failing to produce eggs. Nevertheless, based on the clear orthologous relationships between human and arthropod ABCB HTs and the fact that many of the arthropod ABCB HTs are predicted to be targeted to the mitochondria (predicted by TargetP 1.0 (Emanuelsson et al., 2007), data not shown), it is likely that arthropod ABCB HTs have similar roles as their counterparts in humans. 2.3. The ABCC family Human ABCC proteins are FTs with functionally diverse functions such as ion transport (e.g. human ABCC7, the cystic fibrosis transmembrane conductance regulator), cell-surface receptor activity (e.g. human ABCC8 and 9, sulfonylurea receptors) and translocation of a broad range of substrates like drugs, cyclic nucleotides, endogenous/exogenous compounds and their glutathione conjugates (Dean et al., 2001; Keppler, 2011; Leslie et al., 2005; Schinkel and Jonker, 2003). Because of their ability to extrude drugs with broad specificity, many ABCCs were historically named multidrug-resistance associated proteins (MRPs), with “long” MRPs (human ABCC1-3, 6 and 10/MRP1e3, 6 and 7) having an extra N-terminal transmembrane spanning domain (TMD0) compared to “short” MRPs (human ABCC4, 5, 11 and 12/MRP4, 5, 8 and 9) (Deeley et al., 2006). Human MRP1 was the first MRP to be cloned and was identified in a multidrug resistant lung cancer cell W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 95 Fig. 4. Phylogenetic analysis of ABCC proteins of H. sapiens and seven arthropod species. For procedure and details of phylogenetic analysis see Supplementary Text. For color and shape codes see Fig. 3. The scale bar represents 0.5 amino-acid substitutions per site. One-to-one ABCC orthologues found in H. sapiens and seven arthropod species are shaded in grey, while examples of species-specific ABCC expansions are indicated with an arch. line (Cole et al., 1992; Cole, 2013). The various MRPs differ from Pgps (ABCB FTs) by the ability to actively transport a broad range of glucuronate, sulfate and glutathione (GSH)-conjugated organic anions. It has also been shown that several MRPs act in synergy with several phase II conjugating enzymes like the GSH-Stransferases (GSTs) and UDP-glycosyltransferases (UGTs) to confer resistance to electrophilic drugs and carcinogens (Leslie, 2012; Liu et al., 2012; Sau et al., 2010). Intriguingly, the two arthropod species with the highest number of ABCCs, T. urticae and T. castaneum, also have a clear expansion of the GST repertoire (Grbi c et al., 2011; Shi et al., 2012). The T. urticae genome harbors an expansion of muclass GSTs that are not present in insects and were until recently believed to be vertebrate specific (Grbi c et al., 2011). Future studies should reveal if there is a coordinated action between the high number of GSTs and the many ABCCs in T. urticae and T. castaneum. Next to the transport of conjugated compounds, human MRPs can also transport unconjugated compounds, including the chemotherapeutics vinblastine, etoposide, daunorubicin, and doxorubicin, in co-transport with GSH (Ballatori et al., 2009; Leslie et al., 2005; Loe et al., 1998). In our phylogenetic analysis of the ABCC subfamily, 23 T. urticae ABCC transporters of which the majority has a TMD0, (Dermauw et al., 2013a) clustered with D. melanogaster CG6214, A. gambiae AGAP009835 and AGAP008437, A. mellifera AmABCC9, T. castaneum TcABCC-9A, B. mori BGIBMGA010330, BGIBMGA010331 and BGIBMGA010332 and a group of human “long” MRPs (MRP1e3 and 6) (Fig. 4). Using recombinant expression in Sf9 cells and vesicular assays, it was reported that D. melanogaster CG6214 (also named dMRP) shares the biochemical properties of its human orthologues, such as the transport of bestradiol 17-b-D-glucuronide, leukotriene C4 and calcein (Szeri et al., 2009; Tarnay et al., 2004). It has also been shown that alternative splicing results in multiple isoforms for D. melanogaster CG6214 and its orthologues in A. gambiae and Trichoplusia ni, which might generate functional diversity for this ABCC transporter (Grailles et al., 2003; Labbé et al., 2011; Roth et al., 2003). Furthermore, Chahine and O’Donnell (2009, 2011) found that dietary exposure to the chemotherapeutic agent methotrexate or the P450-monooxygenase inhibitor piperonylbutoxide resulted in an 96 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 upregulation of CG6214 in the Malpighian tubules of D. melanogaster. This group also discovered that reduction in the expression of CG6214 was correlated with reduced secretion of the chemotherapeutic daunorubicin (Chahine et al., 2012). Less is known about the other arthropod orthologues of human ABCC1e3 and 6. Recently, Yoon et al. (2011) reported that the ortholog of CG6214 in Pediculus humanus humanus (PhABCC4) was more highly expressed after exposure to the pesticide ivermectin and that injection of PhABCC4 dsRNA altered the sensitivity of P. humanus to ivermectin (see also Section 4.2.2). The evolutionary analysis also identified two clear orthologous relationships between arthropod ABCCs and human ABCCs. One ortholog of a human “long” MRP, human ABCC10/MRP7, was present in all arthropods included in our analysis (Fig. 4, Table 2). In contrast to human MRP1, not much is known about the function of human ABCC10. This MRP is distinct from other human ABCCs in that it does not transport typical human MRP substrates like glutathione and sulfate conjugates. Unlike other MRPs, human MRP7 is able to confer resistance to taxanes (Hopper-Borge et al., 2009). Nevertheless, the presence of one-to-one orthologues with arthropods, suggests a more conserved function of this ABCC protein in humans and arthropods. The human sulfonylurea receptors (human ABCC8/SUR1 and human ABCC9/SUR2) clustered with D. melanogaster Sur, A. gambiae AGAP009799, B. mori BGIBMGA006882, A. mellifera AmABCC2, D. pulex Dappudraft_442500 and T. urticae tetur11g05990 (Fig. 4, Table 2). Sulfonylurea receptors assemble with inwardly rectifying potassium (Kir) subunits, to form ATP-sensitive potassium channels (KATP). These channels are involved in multiple physiological processes, with roles in glucose homeostasis, ischemic protection and innate immunity (Akrouh et al., 2009; Eleftherianos et al., 2011). Surprisingly, a clear ortholog of human SUR could not be identified in the genome of T. castaneum (see also the OrthoDB group of arthropod SURs (EOG7HFCZ2) (Waterhouse et al., 2011)). In addition, we could not identify such orthologues in transcriptome data of other coleopterans (as determined by a tBLASTn search against coleopteran ESTs in NCBI and using human SUR1 and 2 as query), suggesting that SUR was lost in the coleopteran lineage. However, as orthologues of Kir are present in T. castaneum (as determined by a BLASTp search against the T. castaneum proteome using D. melanogaster Irk1-PB as query) other ABC transporters might assemble with Kir to form a functional ATP-sensitive potassium channel. Although some reports suggest that SURs are the direct target of insecticidal benzoylphenylureas, a group of commercially used chitin synthesis inhibitors, this theory is no longer favored (see Section 4.4.1). A number of ABCC proteins of D. pulex (Dappudraft_347292, Dappudraft_347295 and Dappudraft_347548) and A. mellifera (AmABCC4) clustered with a group of “short” human MRPs (human ABCC5, 11 and 12) that are characterized as transporters of (cyclic) nucleotides/nucleosides and their analogs (Guo et al., 2003; Reid et al., 2003) (Fig. 4). It has also been found that a SNP in the human ABCC11 gene is the determinant for the human earwax type (Yoshiura et al., 2006) and that human ABCC11 is essential for the secretion of odorants and their precursors from apocrine sweat glands (Martin et al., 2009). Finally, human ABCC4 and ABCC7/CFTR clustered with a large clade of arthropod ABCC proteins. Within this clade, 14 T. urticae ABCC transporters formed a sister-group of Dappudraft_347288 and a large insect-specific clade containing lineage-specific expansions of D. melanogaster and T. castaneum ABCC transporters. The function of members from this large arthropod ABCC transporter clade is mainly unknown. T. urticae ABCC proteins tetur14g02290, tetur14g02310, tetur14g02320, tetur14g02330 and tetur23g02452 were reported to be downregulated in diapausing T. urticae females. Diapausing spider mites do not feed and the reduction in plant allelochemicals uptake may be linked to the downregulation of these ABCC genes (Bryon et al., 2013). Next, it has been demonstrated that D. melanogaster CG10505 contributes to metal homeostasis while D. melanogaster CG14709 regulates responsiveness to O2 deprivation and development under hypoxia (Huang and Haddad, 2007; Yepiskoposyan et al., 2006). Recently, Shah et al. (2012) also showed that D. melanogaster CG4562 was upregulated in Cyp6g1 knockdown flies, suggestive of molecular interaction within a detoxification network. The most enigmatic member from this large arthropod ABCC-group clade is probably B. mori BGIBMGA007792e BGIBMGA007793 (these proteins were considered as separate transporters by Liu et al., 2011, but should be combined to form one full transporter (Atsumi et al., 2012)). An insertion in this B. mori transporter has been clearly linked to resistance against the Bacillus thuringiensis (Bt) Cry1A toxin but its precise role in Bt toxin mode of action is however unknown (see Section 4.2.2). Remarkably, no clear orthologues of this lepidopteran transporter were detected in the other arthropod species included in our analysis (Fig. 4) and this might help explain why Cry1A toxins are exclusively toxic against Lepidoptera (de Maagd et al., 2001). 2.4. The ABCD subfamily The ABCD subfamily consists of HTs that need to dimerize to form a functional transporter. In humans they are involved in the import of long and branched chain acyl-CoA molecules into the peroxisome (Morita and Imanaka, 2012). Both T. urticae and all insect species have two ABCD genes, while D. pulex and humans have three and four ABCD genes respectively (Table 2). The clear orthologous relationships between arthropod ABCDs and human ABCD1/2 and ABCD3 suggest that their function is conserved (Fig. 5A, Table 2). 2.5. The ABCE and ABCF family ABC proteins from the ABCE and ABCF family have 2 NBDs but lack TMDs and are involved in biological processes other than transport. The ABCE1 protein is essential in all eukaryotes examined to date and plays a fundamental role in ribosome biogenesis and translation regulation (Andersen and Leevers, 2007; Barthelme et al., 2011). Contrary to human ABCE1 (also called Rli1p or OABP), human ABCF1 (also called ABC50) is probably only involved in translation regulation (Paytubi et al., 2009), while the precise role of ABCF1 and ABCF2 is unclear. In our phylogenetic analysis, one ortholog of human ABCE1, ABCF1e3 was found for each arthropod species (Fig. 5B, Table 2). Based on these clear orthologous relationships, arthropod ABCE and ABCF proteins probably have an analogous function as their human orthologues. An essential role of ABCE and ABCF proteins was recently demonstrated for T. castaneum, where TcABCE-3A or TcABCF-2A dsRNA injection in penultimate larvae resulted in 100% mortality (Broehan et al., 2013). 2.6. The ABCG family The ABCG family is present in most metazoan species, plants and fungi but while in metazoans only ABCG HTs have been reported to date, several ABCG FTs (also termed pleiotropic drug resistance proteins (PDRs)) have been identified in plant and fungi (Kovalchuk and Driessen, 2010; Verrier et al., 2008). ABCG HTs have a typical reverse domain organization, with the NBD being localized to the N-terminal side of the TMD, and need to dimerize to form a functional transporter. The principal substrates of four out of five human ABCG proteins are endogenous and mostly dietary W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 A 97 B Fig. 5. Phylogenetic analysis of ABCD, E and F proteins of H. sapiens and seven arthropod species. A) ABCD proteins, B) ABCE and F proteins. For procedure and details of phylogenetic analysis see Supplementary Text. For color and shape codes see Fig. 3. The scale bar represents 0.5 amino-acid substitutions per site. lipids, while human ABCG2 (breast cancer resistance protein, BCRP) has a much broader substrate specificity and is known as a multidrug efflux pump (Kerr et al., 2011; Tarr et al., 2009). In our phylogenetic analysis we identified for each arthropod species an ortholog of human ABCG5 and 8. Similar to human ABCG5/ABCG8, the arthropod orthologues (Fig. 6, Table 2), are all found juxtaposed in a head-to-head orientation (Dermauw et al., 2013a). In humans, ABCG5 and 8 are glycoproteins that form obligate heterodimers. They limit the absorption of plant sterols and cholesterol from the diet and promote secretion of plant sterols and cholesterol from liver cells into the bile (Graf et al., 2003; Kerr et al., 2011; Tarr et al., 2009). Based on their head-to-head orientation and clear orthologous relationships with human ABCG5 and ABCG8, these arthropod ABCGs probably have a similar role as their human orthologues. Phylogenetic analysis reveals that D. melanogaster white clusters with T. castaneum TcABCG-9B, B. mori BGIBMGA002922, A. mellifera AmABCG2, A. gambiae AGAP000553, and nine ABCG proteins of both T. urticae and D. pulex. D. melanogaster scarlet has two orthologues in A. gambiae and one in T. castaneum, B. mori, A. mellifera and D. pulex while D. melanogaster brown clusters with A. gambiae AGAP007655, A. mellifera AmABCG11 and AmABCG12, and B. mori BGIBMGA002581 and BGIBMGA002712 (Fig. 6, Table 2). The D. melanogaster ABCG genes white, scarlet and brown are at present the best studied arthropod ABCG genes. The D. melanogaster white gene product heterodimerises with gene products of either D. melanogaster scarlet or brown to give functional transporters that are involved in the uptake of pigment precursors in cells of Malpighian tubules and developing compound eyes. Mutation in genes encoding these D. melanogaster ABCG proteins results in flies with eye-color phenotypes (white, scarlet and brown) distinct from the wild-type brownered-eyecolor phenotype (Ewart et al., 1994; Ewart and Howells, 1998; Mackenzie et al., 1999). D. melanogaster white mutants with a white-eye color, were the first genetic Drosophila mutants to be isolated and marked the beginning of the Drosophila genetics era (Green, 1996; Morgan, 1910), but the ABC-transporter function has been attributed to the D. melanogaster white protein only 25 years ago (Mount, 1987). The role of the T. castaneum and B. mori ortholog of D. melanogaster white in eye pigmentation has also been experimentally validated (Broehan et al., 2013; Komoto et al., 2009). In contrast to insects, both D. pulex and T. urticae have nine co-orthologues of D. melanogaster white. Dimerization between these co-orthologues in T. urticae might result in translocation of pigment precursors to the eyes, while in D. pulex dimerization between these co-orthologues or between these coorthologues and the D. pulex ortholog of scarlet, might result in transport of pigment precursors to the eyes respectively. However, as many other functions have been attributed to D. melanogaster white and its insect orthologues (Borycz et al., 2008; Zhang and Odenwald, 1995; Evans et al., 2008; Komoto et al., 2009), these 98 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 T. urticae expanded ABCG clade 1:1 D. pulex expanded ABCG clade Fig. 6. Phylogenetic analysis of ABCG proteins of H. sapiens and seven arthropod species. For procedure and details of phylogenetic analysis see Supplementary Text. For color and shape codes see Fig. 3. The scale bar represents 0.5 amino-acid substitutions per site. One-to-one ABCG orthologues found in H. sapiens and seven arthropod species are shaded in grey, while examples of species-specific ABCG expansions are indicated with an arch. proteins might also have alternative functions. Noteworthy, the T. castaneum ortholog of D. melanogaster brown, involved in transport of red pigment (pteridine) precursors, could not be identified in our phylogenetic analysis. The absence of a clear D. melanogaster brown ortholog in T. castaneum has also been indirectly demonstrated by Broehan et al. (2013), since injection of TcACBG-9A dsRNA (T. castaneum ortholog of D. melanogaster scarlet which is involved in transport of brown pigment (ommochrome) precursors) produces a white-eye instead of a red-eye phenotype. The latter phenotype is in line with Lorenzen et al. (2002) which suggested that the Tribolium larval eyespot and adult eye are only pigmented by ommochromes, whose precursors in D. melanogaster are normally transported by heterodimers of white and scarlet, and not pteridines, whose precursors in D. melanogaster are transported by heterodimers of white and brown. A clear ortholog of D. melanogaster CG3327, also named E23 (Early gene at 23), was identified in A. mellifera (AmABCG1), T. castaneum (TcABCG-8A), D. pulex (Dappudraft1_347416) and T. urticae (tetur17g02510) (Fig. 6, Table 2). In D. melanogaster E23 is a 20-OH ecdysone (20E) induced ABC transporter, probably capable of regulating the 20E response (Hock et al., 2000). Recently, a similar function has been attributed to the T. castaneum ortholog of D. melanogaster E23 (TcABCG-8A) by Broehan et al. (2013). Bryon et al. (2013) also reported that tetur17g02510 was upregulated in diapausing T. urticae females compared to non-diapausing females. As T. urticae most likely uses ponasterone A instead of 20E as a molting hormone (Grbic et al., 2011), future research should point out if the T. urticae ortholog of E23 has a similar function as its arthropod counterparts. Liu et al. (2011) suggested that BGIBMGA010557 is a B. mori ortholog of D. melanogaster E23. This orthologous relationship, however, could not be deduced from our phylogenetic analysis but instead B. mori BGIBMGA010557 clusters with a group of poorly characterized insect ABCG proteins. On the other hand, Liu et al. (2011) showed that B. mori BGIBMGA010557 (together with BGIBMGA005226, BGIBMGA005203, BGIBMGA005202 and BGIBMGA010555) is expressed in the midgut and is upregulated by 20E during molting and pupation. For these five B. mori ABCG proteins we could identify a clear ortholog for almost all insect species included in our analysis (Fig. 6, Table 2). This might suggest that in insects more than one ABCG protein can be induced by 20E and consequently that several ABCG proteins might mediate or act W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 downstream of 20E responses. The role of these insect ABCG proteins in insect development has also been shown by Broehan et al. (2013). Injection of TcABCG-4C (T. castaneum ortholog of B. mori BGIBMGA005202) dsRNA in T. castaneum larvae resulted in arrested development and rapid death. In addition to this phenotype, TcABCG-4C dsRNA injected females laid fewer eggs that failed to hatch. Cryosections of TcABCG-4C dsRNA injected larvae also showed that lipids were depleted in both the larval fat body as the larval epicuticle. Based on these findings, Broehan et al. (2013) suggested that TcABCG-4C is involved in transporting lipids to the cuticle and is essential for the formation of a waterproof barrier in the epicuticle. Except for T. urticae, we also identified a clear ortholog of human ABCG1 and ABCG4 in all arthropods included in our analysis (Fig. 6, Table 2). The function of human ABCG4 is not well-known while human ABCG1 has a critical role in controlling intracellular sterol homeostasis in a variety of cells (Kerr et al., 2011; Tarr et al., 2009). Arthropod orthologues of human ABCG1 have been poorly characterized, with D. melanogaster Atet reported to be expressed in the trachea (Kuwana et al., 1996). Finally, we also identified a lineagespecific expansion of ABCG proteins in both D. pulex and T. urticae, but found no arthropod orthologues of human ABCG2. No information is available on the function of these expanded groups in D. pulex and T. urticae, although in T. urticae some of these responded to xenobiotic exposure (Dermauw et al., 2013a). Human ABCG2 is known to transport a whole gamut of substrates, comprising anticancer drugs (Kerr et al., 2011; Tarr et al., 2009). Because of this feature of the human ABCG2 proteins, arthropod ABCGs have also been put forward as potential candidates in xenobiotic resistance (Buss and Callaghan, 2008; Labbé et al., 2011) (see Section 4.2). 2.7. The ABCH subfamily The ABCH subfamily was first identified in D. melanogaster and is not present in mammals, plants and fungi (Dean et al., 2001; Kovalchuk and Driessen, 2010; Verrier et al., 2008). Next to arthropods, the zebrafish Danio rerio has also been reported to contain an ABCH transporter (Popovic et al., 2010) while other teleost fish lack this type of ABC transporter (Liu et al., 2013). In our analysis clear orthologous relationships were detected between all insect ABCH transporters, with each insect species having three ABCH transporters (Table 2, see Supplementary Fig. 2). The diamond-back moth Plutella xylostella has been reported to contain twoefour copies (depending on the presence or absence of allelic variation in the dataset) of the D. melanogaster ABCH protein CG9990 (You et al., 2013). In contrast to insects, D. pulex and T. urticae have a relatively high number of ABCH proteins (15 and 22, respectively). Both D. pulex and T. urticae ABCHs clustered into separate clades (Table 2, see Supplementary Fig. 2), suggesting that the diversity of ABCH proteins in these species has been due to lineage-specific expansions ((Dermauw et al., 2013a), this study). Similar to ABCG proteins, ABCH proteins are HTs and have a reverse domain organization, with the NBD at the N-terminal side of the TMD. Their function, however, is poorly understood. D. melanogaster CG33970 is 2-fold upregulated after cold hardening of adult flies (Qin et al., 2005) while six ABCH genes were differentially expressed in diapausing T. urticae females compared to non-diapausing females (Bryon et al., 2013). D. melanogaster CG9990 null mutants and an RNAi line that silences D. melanogaster CG9990 are both lethal (Mummery-Widmer et al., 2009; Zhang et al., 2009) while TcABCH-9C dsRNA injection in T. castaneum larvae resulted in similar phenotypes as injection with TcABCG-4C (see Section 2.6). Of peculiar interest, a P. xylostella ortholog of D. melanogaster CG9990 ((You et al., 2013), this study) was the most 99 upregulated ABC transporter in two pesticide resistant strains (see Section 4.2). 3. Inferring the involvement of ABC transporters in xenobiotic transport: methods and assays Human ABC transporters such as ABCB1 (P-gp, MDR1), ABCC2 (MRP2) and ABCG2 (BCRP) are extremely well studied for their importance in the absorption, distribution and excretion of drugs and therapeutic agents, and consequently a number of tools has been devised and critically reviewed to study ABC transporters in vivo and in vitro (Glavinas et al., 2008; Lin and Yamazaki, 2003; Zhang et al., 2003). Many of the described assays and techniques are directly applicable in the study of arthropod ABC transporters, in particular the in vitro assays using cells and cellular membrane preparations. 3.1. Whole cell based assays Whole cell based assays essentially measure the efflux or accumulation of compounds in intact cells. Transporters can either be naturally present, for example when investigating drug resistance cell lines after selection, or can be functionally expressed to high levels in a variety of cells lines by transfection and transformation methods. The active transport of compounds (substrates) mediated by ABC transporters out of cells results in detectable lower rate of substrates accumulation, a lower concentration at the steady state equilibrium or a faster rate of substrate elimination in pre-loaded cells. Many variations in assay type and a multitude of methods to detect and quantify substrate depletion or accumulation have been described. Substrates are often labeled (by a fluorochrome or radiolabel), but direct and high throughput LC-MS methods have also been devised successfully. This type of assays is often used in an indirect set-up. For this purpose, well-known and validated fluorescent dye substrates (such as rhodamine 123, Calcein AM, Hoechst 33342, tetramethylrosamine (TMR)) are used in competition with candidate substrates (Lebedeva et al., 2011). Cells expressing ABC proteins are incubated or pre-loaded with these tractable substrates and eliminated these dyes faster compared to cells lacking ABC-transporter expression. Candidate substrates that are transported are identified by their potential to interfere with dye transport kinetics. In a similar set-up, inhibitors of ABC transporters can be identified. Cellular assays have also been devised using cell mono-layers, as this is of particular importance when in vivo pharmacological barriers such as intestinal epithelial cells are taken into account in drug transport. However, in such experiments cell lines forming a confluent monolayer with very tight junctions are needed, which complicates these experiments (Proctor et al., 2010). 3.2. Vesicular assays Vesicular transport assays are membrane based assays that are often used to detect and quantify the translocation of molecules by ABC transporters. The power of the assay is based on the revolutionizing work of Steck and Kant (1972), who describe the preparation of ‘inside out vesicles’, which can be separated from other membrane fragment such as open membrane lamellae and ‘right side out’ vesicles by density gradient centrifugation. In these vesicles, the ATP-binding site and substrate binding site of the ABC transporters are facing outwards (to the assay buffer solution). Consequently, the transport of substrates into vesicles can be studied, which is essentially more straightforward compared to quantifying substrate depletion or deviations from steady state equilibrium in whole cell based assays. After substrate incubation, vesicle preparations are isolated from the assay solution by rapid 100 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 filtration using glass fiber filters or nitrocellulose membranes and the amount of substrates inside vesicles can be quantified by similar methods as described above (Krumpochova et al., 2012). This assay has been successfully performed with a number of membrane preparations from different sources, including insect cells. Similar to whole cell based assays, vesicular membrane assays can also be used in an indirect set-up where test compounds interfere with the uptake of known and easy to track model substrate molecules (Glavinas et al., 2008; Krumpochova et al., 2012; Lin and Yamazaki, 2003; Zhang et al., 2003). 3.3. ATPase assays The ATPase assay is another type of in vitro assay that is used frequently. It is based on the link between ATP hydrolysis and substrate transport. In these assays, the hydrolysis of ATP during substrate transport is followed by quantification of the liberated inorganic pyrophosphate. Compounds that are transported (or interfere with transport, such as inhibitors) modulate this ATPase activity (Litman et al., 1997). The rather low sensitivity of the assay requires high levels of ABC proteins and thus inside out vesicle preparations, prepared from transfected or transformed cell lines, are most frequently used. In this set-up, also open lamellae in vesicular preparations contribute to the measured activity. ATPase activity is vanadate sensitive, and a fast transport of substrates results in a reproducible and strong increase of ATPase activity. Substrates that are transported slowly, do not generally cause a detectable increase in ATPase activity, but can be identified when used as competitive substrates in an assay with fast transported model substrates (Glavinas et al., 2008; Lin and Yamazaki, 2003; Zhang et al., 2003). These cell and membrane assays are conceptually simple and interpretation of results is usually straightforward. 3.4. Nucleotide trapping assay The nucleotide trapping assay is based on the occurrence of a transition state complex during transport that contains an occluded nucleotide in the nucleotide-binding site (Urbatsch et al., 1995). This state can be stabilized by the addition of vanadate. The amount of nucleotides trapped is proportional to the rate of transport, and can be quantified by incubations with 32 P labeled azido ATP. This method is especially useful for ABC transporters where ATPase activity is not stimulated by substrate addition and where vesicular assays cannot be used (for example for the so called ABC flippases, like human ABCB4) (Smith et al., 2000). 3.5. Fluorescence spectroscopic tools A number of fluorescence spectroscopic tools has also been described to study ABC transporters and to detect potential substrates. Transporters can be labeled with sulfhydryl-specific fluorescent probes on the two conserved Cys residues in the Walker A motif of the nucleotide-binding domain. The fluorescent groups are covalently linked and upon nucleotide binding (ATP, ADP and analogs) a saturable quenching of fluorescence can be detected, indicative of transport (Sharom et al., 2001; Sreeramulu et al., 2007). Another technique is based on the conservation of tryptophan (Trp) residues in proteins across the ABC family. Within purified ABC transporters, those Trp residues contribute to fluorescence which is quenched upon binding of trinitrophenyl nucleotides. Trp fluorescence is also very sensitive to binding of substrates, inhibitors and other modulators (Liu et al., 2000; Sharom et al., 2001). 3.6. In vivo assays Next to the in vitro assays described above, a number of in vivo tools has also been used to link ABC-transporter activity to a certain drug resistant phenotype, such as the generation of (double) knock-out and mutant mice and rat strains (reviewed in Lin and Yamazaki, 2003; Zhang et al., 2003). However, given the lack of orthologues relationships between most ABC proteins across species (and especially between vertebrates and invertebrates) (Table 2), such models are of limited use as a technique to assign function to arthropod ABC proteins. Unfortunately, this is also true for most ABC transporters between different insect species (Table 2) and limits the use of D. melanogaster as an arthropod genetic model, except for the rare cases where clear orthologues can be identified. Proof of principle that gene knockout by P-element insertion or by constructing RNAi lines can be used to study ABC-transporter function in Drosophila has been recently delivered (Chahine et al., 2012). More generally, reverse genetics by RNAi (either by injection or oral administration) can be a powerful tool in assessing ABC function in non-classical models, as was recently very elegantly demonstrated for T. castaneum (Broehan et al., 2013). Last, chemosensitizers that inhibit ABC transporters have been discovered a long time ago and have found clinical applications in overcoming multidrug resistance in humans (reviewed in Choi, 2005), but they are also potentially useful experimental tools in linking a resistant phenotype to the action of an ABC transporters. Chemosensitizers or synergists are administered together with a toxicant or drug, and restore the toxicity or efficacy both in vivo and in vitro. One of the first compounds discovered was verapamil, a phenylalkylamine Ca2þ and Kþ channel blocker with wide clinical use. Verapamil was first shown to reverse multidrug resistance in neoplastic cells and chloroquine resistant Plasmodium falciparum (Martin et al., 1987). It has since then been widely used in the study of mainly human P-gp where it acts as a competitive substrate inhibitor, but it is less potent in inhibiting human MRP1, although it stimulates MRP1 mediated glutathione transport (Loe et al., 2000). Although verapamil has been used as a synergist in insecticide resistance, the efficiency and specificity of verapamil as a competing substrate or inhibitor in distantly related arthropod ABC transporters is still largely unknown. 3.7. Genetic mapping The association between ABC transporters and xenobiotic resistance is often based on synergism of toxicity, combined with the observation of increased expression (see Table 3). However, single point mutations in a transmembrane domain can modulate transport and selectivity of ABC transporters. A SerePhe substitution for example drastically altered the overall degree of drug resistance and specificity conveyed by mdr1 and mdr3 in mice (Gros et al., 1991). If synergism points out the role of ABC transporters in resistance, such point mutations cannot be detected by expression analysis and unbiased approaches are needed. The availability of genetic mapping tools in Drosophila and some lepidopteran species including B. mori, have proven powerful in finding resistance loci associated with ABC transporters (Begun and Whitley, 2000; Heckel, 2012) (see also Section 4.4.2). Until recently, such approaches were limited to arthropods where classical genetic resources are available, such as genetic linkage maps. However, it was recently shown how classical bulk segregant analysis can be modified to allow ultra high resolution mapping in any arthropods species for which classical genetic resources are sparse, but a genome sequence is available ((Van Leeuwen et al., Table 3 An overview of reported associations between ABC transporters and insecticide/acaricide transport and resistance. E/syna Pesticide Species ABC subfamily Carbamates Pirimicarb M. persicae ABCG/ABCHb Thiodicarb H. virescens ABCB FT (P-gp) v v Abamectin Abamectin R. microplus D. melanogaster ? ABCB FT (P-gp) v v v v Avermectin D. melanogaster ABCB FT (P-gp) v v Emamectin benzoate Ivermectin L. salmonis ABCB FT (P-gp)/? v v P. humanus humanus ABCB_unknown/ ABCC/ABCG v v C. pipiens R. microplus ? ABCB HT v v v S. scabiei C. riparius ABCC ? v Moxidectin Acetamiprid R. microplus A. mellifera ? ? Imidacloprid A. mellifera Thiacloprid Macrocyclic lactones Neonicotinoids Organochlorines Evidence Reference Silva et al., 2012 v v Increased expression (microarray) in adult aphids upon exposure to pirimicarb Quinidine synergism (synergism ratio of 12.5 and 1.8 in resistant and susceptible strain, respectively); increased P-gp expression in thiodicarb resistant larvae (Western Blot) Cyclosporin A and MK571 synergism Increased P-gp expression (Western Blot) and increased P-gp related vanadate-sensitive ATPase activity in abamectin resistant strain; verapamil synergism; higher P-gp expression (Western Blot, C219 antibodies) in the humoral/CNS interface in abamectin resistant strain Induction of P-gP expression (Western Blot) and increased P-gp related ATPase activity upon exposure of S2 cells to avermectin; avermectin enhances cellular efflux of rhodamine 123 from S2 cells Verapamil synergism of emamectin benzoate (EMB); induction of P-gp expression (qPCR) upon exposure to EMB Increased expression (qPCR) of six ABC transporters in female lice 4 h post-ivermectin exposure by both immersion and contact applications; injection of PhABCC4 dsRNA (P. humanus ortholog of CG6214) resulted in increased sensitivity to ivermectin; verapamil synergism Verapamil synergism in 4th instar larvae Cyclosporin A and MK571 synergism, increased expression (qPCR) of RmABCB10 in ivermectin (IVM) resistant females and RmABCB10 transcription was upregulated in IVM-resistant females in response to IVM feeding Increased expression (qPCR) upon exposure to ivermectin Verapamil and cyclosporin synergism; ivermectin stimulates ATPase activity in homogenate fractions of C. riparius larvae Cyclosporin A and MK571 synergism Verapamil synergism ? v Verapamil synergism A. mellifera ? v Verapamil synergism Thiametoxam B. tabaci ABCG DDT A. arabiensis D. melanogaster ABCB FT (P-gp)/ABCG ABCB FT (P-gp)/ABCC D. melanogaster ABCG C. pipiens H armigera ? ABCB FT (P-gp) v R. microplus P. xylostella ? ABCA/ABCC/ABCG/ ABCH/ABCF ? v Endosulfan Organophosphates Chlorpyrifos Coumaphos A. mellifera E/exp E/oth v v v v v v v v v v v v v Increased expression (microarray) in thiamethoxam resistant strain Increased expression (qPCR) in a DDT-resistant strain Increased expression (qPCR) in a DDT-resistant strain (91-R), RNAi results in 91-R flies being more susceptible to DDT, verapamil synergism (synergism ratio of 10 and 1.1 in resistant and susceptible strain, respectively) Increased expression (microarray) in DDT-resistant strains (91R and Wisconsin) Verapamil synergism in 4th instar larvae Stimulation of ATPase activity; TMR transport declined with increasing concentrations of insecticide; Trp quenching Cyclosporin A and MK571 synergism Increased expression in chlorpyrifos resistant strain (RNA-seq) Verapamil and oxytetracycline synergism Lanning et al., 1996a,b Pohl et al., 2012 Luo et al., 2013a Luo et al., 2013b Igboeli et al., 2012; Tribble et al., 2007 Yoon et al., 2011 Buss et al., 2002 Pohl et al., 2011, 2012 Mounsey et al., 2007 Podsiadlowski et al., 1998 Pohl et al., 2012 Hawthorne and Dively 2011 Hawthorne and Dively 2011 Hawthorne and Dively 2011 Yang et al., 2013a,b Jones et al., 2012 Strycharz 2010, Strycharz et al., 2013 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 Pesticide class Pedra et al., 2004 Buss et al., 2002 Srinivas et al., 2005; Aurade et al., 2006, 2010b Pohl et al., 2012 You et al., 2013 Hawthorne and Dively 2011 (continued on next page) 101 Pesticide class Pesticide Species ABC subfamily Ethylparaoxon H. armigera Methylparathion E/oth Evidence Reference ABCB FT (P-gp) v Aurade et al., 2010b H. armigera ABCB FT (P-gp) v Monocrotophos H. armigera ABCB FT (P-gp) v Temephos A. caspius A. aegypti ? ABCB FT (P-gp) Triazophos N. lugens ABCC Cyfluthrin C. lectularius ? Cypermethrin C. pipiens H. armigera ? ABCB FT (P-gp) C. lectularius ? v A. gambiae T. ni ABCC ABCB FT (P-gp) v v C. lectularius ? v Fenvalerate H. armigera ? Stimulation of ATPase activity; TMR transport declined with increasing concentrations of insecticide; Trp quenching Stimulation of ATPase activity; TMR transport declined with increasing concentrations of insecticide; Trp quenching Stimulation of ATPase activity; TMR transport declined with increasing concentrations of insecticide; Trp quenching Verapamil synergism (by factor 3.5) Increased expression (qPCR) in larvae upon exposure to temephos; RNAi of P-gp resulted in a significant increase in temephos toxicity to larvae, verapamil synergism Increased expression (SSH and qPCR) in nymphs exposed to sublethal concentrations of triazophos RNAi resulted in reduced resistance to beta-cyfluthrin in a deltamethrin resistant strain Verapamil synergism in 4th instar larva Stimulation of ATPase activity; TMR transport declined with increasing concentrations of insecticide; Trp quenching Increased expression of eight ABC transporters (RNA-seq and qPCR) in a deltamethrin resistant strain; an ABCG transporter was the highest upregulated ABC-transporter Increased expression (RNA-seq) in deltamethrin resistant strain Limited increased expression (qPCR) in insects fed on a deltamethrin containing artificial diet Increased expression of four ABC transporters in a deltamethrin resistant strain (RNA-seq and qPCR) Stimulation of ATPase activity Fluvalinate A. mellifera ? Pyrethroids A. aegypti ABCB HT/ABCC/ABCG Diflubenzuron Cry1A toxin A. caspius Lepidoptera ? ABCA/ABCB/ABCC/ABCD/ABCGb Fipronil Multiresistant Multiresistant P. xylostella T. urticae H. armigera ABCA/ABCC/ABCG/ABCH ABCC/ABCH ABCB FT (P-gp) Deltamethrin Diverse a b E/syna v v E/exp v v v v v v v v Verapamil and oxytetracycline synergism v v v v v v v Increased expression (microarray and qPCR) in pyrethroid resistant strains; ABCB4 gene has a higher copy number in pyrethroid resistant strains Verapamil synergism (by factor 16.4) A deletion or insertion in the ABCC2 gene is correlated with both higher Bt resistance levels and loss Cry1A binding to midgut membranes; eight ABC genes were differentially expressed between Cry1Ac-resistant and -susceptible larvae of P. xylostella Increased expression (RNA-seq) in fipronil resistant strain Increased expression (microarray) in two multiresistant strains Increased P-gp expression (Western Blot) in multiresistant larvae Type of evidence was divided into three categories: E/syn, ABC inhibitor synergism; E/exp, increased expression of ABC genes; E/oth, other type of evidence. ABC subfamily was determined in this study and based on the top BLASTp hits in the NCBI non redundant protein database. Srinivas et al., 2005; Aurade et al., 2006, 2010b Srinivas et al., 2005; Aurade et al., 2006, 2010b Porretta et al., 2008 Figueira-Mansur et al., 2013 Bao et al., 2010 Zhu et al., 2013 Buss et al., 2002 Srinivas et al., 2005; Aurade et al., 2006, 2010b Mamidala et al., 2012 Bonizzoni et al., 2012 Simmons et al., 2013 Zhu et al., 2013 Srinivas et al., 2005, Aurade et al., 2006 Hawthorne and Dively 2011 Bariami et al., 2012 Porretta et al., 2008 Heckel 2012, Lei et al., 2013 You et al., 2013 Dermauw et al., 2013a,b Srinivas et al., 2004 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 Pyrethroids 102 Table 3 (continued ) W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 2012), see also Section 4.4.1). This technique relies on next generation re-sequencing of selected populations and seems especially timely with thousands of arthropods genomes being sequenced currently (i5K-Consortium, 2013). 4. Arthropod ABC transporters in xenobiotic transport and resistance 4.1. ABC transporters as players in detoxification pathways Arthropods have developed a variety of mechanisms to cope with toxic compounds. These mechanisms are generally classified in mechanisms of decreased response to toxic substances, often referred to as pharmacodynamic mechanisms (interaction of toxic substances with their target site) and mechanisms of decreased exposure also called pharmacokinetic mechanisms, which include altered penetration, distribution, metabolism and excretion of the toxic substances. In most cases, high levels of toxicant resistance in arthropods is due to alterations in the sensitivity of the target site caused by point mutations (pharmacodynamic mechanism), or the efficient metabolism or sequestration of the toxic compound (pharmacokinetic mechanism). The overall detoxification process can be divided into three phases, phase IeIII. In Phase I reactions, enzymes such as P450 monooxygenases and carboxylesterases activate the toxic molecules and make them more reactive and water soluble by introducing hydroxyl, carboxyl and amino groups, which often results in an increased conjugation with endogenous molecules by phase II enzymes such as GSTs or UPD-glycosyltransferases. Finally, in phase III the polar compounds or conjugates can be transported out of the cell by cellular transporters and it is in this phase that ABC transporters play an important role. In some cases cellular transporters such as ABCs directly and efficiently transport toxicants out of the cell without enzymatic modifications, thereby preventing the exertion of toxicity in the cell or organism (sometimes also referred to as “Phase 0”) (Despres et al., 2007; Kennedy and Tierney, 2013). ABC transporters have been implicated in resistant phenotypes in many animals, including both vertebrates and invertebrates, and are in the latter group probably best studied in nematodes (Ardelli, 2013; Lespine et al., 2012). Fewer cases have been reported in arthropod resistance, although the interest in this family is steadily growing, especially with the availability of more sequence data and the availability of genetic tools in organisms other than Drosophila. A survey of cases where the involvement of ABC transporters in arthropod resistance is suggested is presented in Table 3 and discussed below in the light of the strength of the evidence. 4.2. ABC transporters associated with insecticide transport and resistance ABC transporters have been associated with transport of and/or resistance to 27 different insecticides/acaricides, belonging to nine distinct chemical classes and several mode of action groups: carbamates, macrocyclic lactones, neonicotinoids, organophosphates, pyrethroids, cyclodienes, benzoylureas, phenylpyrazoles, and DDT (reviewed in (Buss and Callaghan, 2008) and updated in this study, Table 3). ABCB FTs/P-gps followed by ABCCs and ABCGs were the most reported ABC subfamilies to be involved in pesticide transport and/or resistance. The evidence pointing toward a role in transport or resistance is most often based on the quantification of transcript or protein levels, and by synergism studies using ABC inhibitors that are poorly characterized in arthropods. In some cases, ATPase assays revealed the simulation of ATP hydrolysis upon contact with insecticides, which is considered indicative of transport. Vesicular 103 transport assays that directly quantify insecticide transport have not been reported until present, although many of the methods using Sf9 cells to recombinantly express ABC transporters and prepare vesicles are directly relevant for arthropod studies (see Section 3). 4.2.1. Carbamates and organophosphates Lanning et al. (1996a) showed for the first time a link between an arthropod ABC transporter and resistance against an insecticide, the carbamate thiodicarb (Table 3). Using human monoclonal P-gp antibodies, it was demonstrated that ABCB FTs/P-gps were highly expressed in the cuticle of larvae of the tobacco budworm Heliothis virescens and that P-gps were overexpressed in thiodicarb resistant larvae of this species. Furthermore it was found that inhibition of ABCB FTs/P-gps with quinidine decreased the LD50 of thiodicarb for resistant H. virescens larvae by a factor of 12.5, while that of susceptible larvae only decreased by a factor of 1.8. In a follow-up paper, it was further shown that thiodicarb treatment in combination with quinidine increased C14 labeled thiodicarb accumulation 2-e3-fold as compared to thiodicarb treatment alone (Lanning et al., 1996b). Other reports have associated ABC transporters with carbamate resistance, but without further characterization. Genes encoding an ABCG and ABCH transporter were among the 183 upregulated genes in adults of the green peach aphid Myzus persicae exposed to pirimicarb. The upregulation of these ABC transporters was however not validated by qRT-PCR and no synergism tests were performed (Silva et al., 2012). Several studies have also reported on the ABCB FT/P-gpmediated efflux of organophosphates (OPs) (Aurade et al., 2006, 2010b; Srinivas et al., 2005). Aurade et al. (2006, 2010b) found that ethylparaoxon, monocrotophos and methylparathion at a concentration of 100, 100 and 50 mM stimulated purified P-gpmediated ATPase activity by 20%, 25% and 30% in the tobacco budworm Helicoverpa armigera, respectively, suggestive of P-gp meditated transfer of these compounds (see Section 3). In this study, it was also shown by Trp fluorescence quenching that ethylparaoxon and methylparathion interact with H. armigera Pgp with relatively high affinity (Kd values of 25 and 50 mM). Finally, the authors also succeeded in reconstituting H. armigera P-gp into proteoliposomes and showed that ethylparaoxon, monocrotophos and methylparathion inhibit P-gp-mediated transport of the fluorescent reporter dye tetramethylrosamine (TMR) in a concentration dependent manner. Whether OPs compete with TMR as substrates or act as non-competitive inhibitors was not demonstrated. Interestingly, in a follow-up study it was shown that cholesterol could increase the ethylparaoxon or methylparathion stimulated H. armigera P-gp ATPase activity in reconstituted proteoliposomes by 10e20% (Aurade et al., 2012). Another example of interaction between ABCB FTs/P-gps and OPs was recently documented for the mosquito Aedes aegypti (FigueiraMansur et al., 2013). An 8-fold increase of an A. aegypti ABCB FT/P-gp gene was observed in A. aegypti larvae 48 h after treatment with 0.0007 mg/L temephos. Furthermore, temephos treatment of A. aegypti larvae in combination with a sublethal dose of verapamil resulted in a decrease of the LC50 of temephos by a factor of 1.24 and temephos toxicity increased by 57% in P-gp silenced larvae. Similarly, Porretta et al. (2008) showed that P-gp inhibition by verapamil in the closely related Aedes caspius resulted in LD50 reduction by a factor of 3.5. These results suggest a role for P-gp in efflux of temephos in Aedes sp., but whether these P-gps are also involved in temephos resistance in these species remains to be determined. Finally, a link between ABC transporters in OP efflux has also been suggested for two other arthropod species. In a chlorpyrifos resistant strain of P. xylostella ABCA/C/G/H and F transporter(s) were more highly expressed 104 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 compared to a susceptible strain as determined by RNA-seq (You et al., 2013) while in the brown planthopper Nilaparvata lugens SSH and qRT-PCR revealed a significant increase of an ABCC transporter in nymphs exposed to sublethal concentrations of triazophos (Bao et al., 2010). However, whether increased expression is related to transport and resistance has not been demonstrated. 4.2.2. Macrocyclic lactones Resistance to macrocyclic lactones (MLs), such as abamectins, ivermectin and moxidectins, in arthropods and nematodes is in most cases linked to several genetic factors. Both mutations in target-site genes (e.g. in glutamate-gate chloride channels), as well as quantitative changes in the expression of detoxification enzymes and ABC transporters have been reported to be involved in ML resistance (Dermauw et al., 2012; Pu et al., 2010; Wolstenholme and Kaplan, 2012) (Table 3). In mammals, it has been clearly demonstrated that ivermectin is a substrate of P-gps as human MDR-cells accumulate less 3H ivermectin (Pouliot et al., 1997; Schinkel et al., 1994). The role of ABC transporters in ML transport and/or resistance in nematodes has been thoroughly characterized, with the majority of MLs stimulating ABCB FT/P-gp-mediated efflux of the reported substrate Rhodamine 123 (Kerboeuf and Guégnard, 2011). In contrast, the involvement of ABCB FT/P-gps in ML transport and/ or resistance in arthropods is not well documented. Podsiadlowski et al. (1998) reported for the first time the synergistic action of ABCB FT/P-gp-transporter inhibitors on the toxicity of a ML in an insect species. Sublethal concentrations of verapamil (30 mM) or cyclosporin A (3 mM) reduced the LC50 of ivermectin for the midge Chironomius riparius with a factor 2.7 and 2.8, respectively. Furthermore, it was shown that P-gps were located in the anal papillae of C. riparius larvae and that ivermectin at a concentration of 0.1e1 mM stimulated ABCB FT/P-gp-mediated ATPase activity in homogenate fractions of C. riparius larvae. Similar to C. riparius, 100 mM verapamil has also been shown to synergistically enhance the toxicity of ivermectin in the mosquito Culex pipiens. Comparison of synergism ratios between resistant and susceptible strains did not reveal any differences, indicating that ABC transporters did not contribute to resistance (Buss et al., 2002). In 2012, Igboeli et al. found that concurrent exposure of the sea lice Lepeophtheirus salmonis (Crustacea: Copepoda) to 10 mM verapamil and 300 mg/L emamectin benzoate (EMB) caused significantly higher mortality compared to exposure of L. salmonis to EMB alone. In addition, ABCB FT/P-gp expression was induced in adult sea lice exposed to 1 mg/L EMB. Induced expression of ABC transporters upon exposure to ivermectin was also observed in females of the body louse P. humanus and the scabies mite Sarcoptes scabiei (Mounsey et al., 2007, 2006; Yoon et al., 2011). For the body louse, it was also shown that injection of dsRNA of P. humanus ABCC4 (the most highly expressed ABC gene after exposure to ivermectin) into female lice increased their sensitivity to ivermectin with 20e30% compared to buffer injected lice (Yoon et al., 2011). However, the low number of lice injected (n ¼ 15) and the discrepancy between assessing toxicity (12 h post injection) and the reduction in transcript levels (48 h post injection) require further validation. The role of ABC transporters in ML resistance has at present only been thoroughly investigated in two arthropod species, the cattle tick Rhipicephalus microplus and the fruit fly D. melanogaster (Luo et al., 2013a; Pohl et al., 2011, 2012). Pretreatment with 5 mM of ABC-transporter inhibitors cyclosporin A and MK571 reduced the LC50 of ivermectin, abamectin and moxidectin in field collected resistant R. microplus larvae with a factor of 1.2e1.5, while toxicity was not affected in a susceptible laboratory strain. Resistant R. microplus females showed a higher constitutive expression of an ABCB HT gene (RmABCB10) compared to the susceptible strain. Furthermore, exposure of tick females to ivermectin resulted in an upregulation of RmABCC10 in the resistant strain while transcript levels did not significantly change in females of the susceptible strain (Pohl et al., 2011, 2012). ABCB HTs are located in the mitochondria and are believed to play a role in iron homeostasis and protection against oxidative stress. However, contrary to ABCB FTs they have rarely been linked with xenobiotic resistance (Elliott and Ai-Hajj, 2009; Zutz et al., 2009). The most convincing evidence for the involvement of ABC transporters in ML resistance has been published recently by Luo et al. (2013a,b). It was shown that avermectin stimulated P-gp ATPase activity and efflux of Rhodamine 123 in Drosophila derived S2 cells and that ABCB FTs/P-gp expression was induced by avermectin in a dose- and time-dependent manner. Next, it was shown that avermectin induced P-gp expression was caused by an elevation of intracellular calcium levels, both directly by activating calcium ion channels, and indirectly by activating chloride channels. Of particular interest, a well-known chloride channel agonist pentobarbital enhanced ivermectin induced P-gp expression in a concentration dependent manner. Induced expression by the closely related chemical structure phenobarbital of two ABCB FTs/ P-gps and an ABCC transporter (CG6214) in D. melanogaster flies was recently also demonstrated by Misra et al. (2011). In a followup study of Luo et al. (2013a,b), the role of ABCB FTs/P-gps in abamectin resistance in D. melanogaster was investigated using a 7-fold abamectin resistant strain that was selected from a susceptible laboratory strain (Canton-S). ABCB FT/P-gp expression and P-gp ATPase activity in the resistant strain was increased 2-e3-fold compared to the susceptible strain. Treatment with verapamil reduced P-gp ATPase activity in the adults of the resistant strain by 89% compared to 31% in the susceptible strain, while abamectin LD100 values for resistant and susceptible larvae were reduced by 84% and 33% in the same treatment. Through confocal microscopy and immunofluorescent staining with human anti-P-gp C219 antibodies, it was also observed that P-gp expression in the bloode brain barrier (BBB) in heads from adults of the resistant strain was higher than that of the susceptible strain. Finally, avermectin treatment resulted in an increased P-gp expression in the BBB of the resistant strain, compared to a decline in the susceptible strain. Taken all this data into account, it is likely that P-gps are involved in (low-levels) of abamectin resistance in D. melanogaster. 4.2.3. Organochlorines Associations between DDT resistance and ABC transporters are scarce. An ABCG transporter gene was significantly overtranscribed in resistant strains of D. melanogaster and Anopheles arabiensis (Jones et al., 2012; Pedra et al., 2004). Recently, Strycharz et al. (2013) determined that D. melanogaster flies from a highly resistant DDT strain (91-R) excreted w4-fold more DDT and its metabolites than flies from the susceptible strain. A topical pretreatment with verapamil reduced the LC50 value of the resistant flies by 10fold while no effect on the LC50 of susceptible flies was observed. In a preliminary report, Strycharz et al. also showed that two ABCB (mdr50 and mdr65) and one ABCC (dMRP/CG6214) transporter gene(s) were overexpressed (w1.3-fold) in the resistant D. melanogaster strain compared to the susceptible strain. RNAi knockdown of these genes in resistant flies also increased their susceptibility to DDT (Strycharz, 2010; Strycharz et al., 2010). Taken together, ABC transporters are most likely involved in the increased excretion of DDT in D. melanogaster (91-R) resistant flies, hereby lowering the concentration of DDT reaching the target. The role of ABC transporters in transport/resistance of other organochlorines has only been marginally studied. Verapamil increased toxicity to endosulfan in 4th instar larvae of the mosquito C. pipiens (Buss et al., 2002) while endosulfan stimulated ATPase activity and W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 105 Table 4 An overview of reported associations between ABC transporters and allelochemical transport. Allelochemical Species ABC subfamily Evidence Reference ? T. urticae ABCA/ABCC/ABCE/ABCG/ABCH ? ABCGa Grbi c et al., 2011, Dermauw et al., 2013a Robert et al., 2013 Cardenolide Dendroctonus ponderosae M. sexta Colchicine D. melanogaster ABCB FT(P-gp) Curcumin H. armigera ABCB FT(P-gp) Flavonoids H. armigera ABCB FT(P-gp) Nicotine M. sexta ? Vinblastine M. sexta ? Increased expression (RNA-seq) upon transfer from preferred host (bean) to a more challenging host (tomato) Increased expression (RNA-seq) in adults that were fed on lodgepole pine host tree tissues compared to adults that were starved Verapamil inhibits P-gp-mediated efflux of digoxin at the perineurium of nerve cords Expression of mdr49 in brain and gut of larvae is enhanced upon colchicine feeding (as determined by Northern blotting); Drosophila mdr49 deletion mutants showed increased sensitivity to colchicine Curcumin mixture inhibited the activity of H. armigera P-gp ATPase by 80e90% at 100 mM concentration, addition of the curcuminoid mixture collapsed the tetramethylrosamine concentration gradient generated by H. armigera P-gp ATPase Flavonoids (morin, quercetin and phloroglucinol) inhibited H. armigera P-gp ATPase activity and bind to H. armigera P-gp with high affinity Verapamil inhibits accumulation of nicotine in the lumen of Malpighian tubules; ABC transporters were downregulated (microarray) in M. sexta larvae fed on tobacco plants transformed to silence nicotine biosynthesis compared to larvae that fed on wild-type tobacco plants Verapamil inhibits accumulation of vinblastine in the lumen of Malpighian tubules a ? Petschenka et al., 2013 Tapadia and Lakhotia 2005; Wu et al., 1991 Aurade et al., 2010a Aurade et al., 2011 Murray et al., 1994, Gaertner et al., 1998, Govind et al., 2010 Gaertner et al., 1998 ABC subfamily was determined in this study and based on the top BLASTp hit in the NCBI non redundant protein database. inhibited transport of tetramethylrosamine in H. armigera (Aurade et al., 2006, 2010b; Srinivas et al., 2005). Sreeramulu et al. (2007) observed similar effects of endosulfan on ABCB FTs/P-gps of human multidrug resistant cells. 4.2.4. Pyrethroids For three different insect species, pyrethroid resistance has also been associated with the upregulation of ABC-transporter genes (Bariami et al., 2012; Bonizzoni et al., 2012; Mamidala et al., 2012; Zhu et al., 2013). Bariami et al. (2012) showed by microarray experiments that a P450 monooxygenase (Cyp9J26) and an ABCB transporter gene (ABCB4), were upregulated in a pyrethroid resistant strain of the dengue vector A. aegypti. Furthermore, quantitative PCR revealed that increased transcript levels of these A. aegypti genes were associated with a w7-fold increase in gene copy number. A. aegypti ABCB4 belongs to the ABCB half transporters, which have only very rarely been associated with xenobiotic resistance but are thought to be mitochondrial ABC transporters with roles in the biogenesis of cytosolic ironesulfur clusters, heme biosynthesis, iron homeostasis and protection against oxidative stress (Elliott and Ai-Hajj, 2009; Zutz et al., 2009). In another transcriptome study, RNA-seq analysis and qPCR revealed that four ABC transporters (ABC8e11) were upregulated in a deltamethrin resistant strain of Cimex lectularius when compared to a susceptible strain. In addition, RNAi mediated knockdown of two of these ABC genes (ABC8 and 9) resulted in an increased susceptibility to betacyfluthrin in deltamethrin resistant female bed bugs (Zhu et al., 2013). However, in some species there is little to no relationship between pyrethroid exposure and increased expression of ABCB FTs/P-gp as recently shown by Simmons et al. (2013) for larvae of T. ni. Besides alterations in ABCB FT/P-gp expression levels, pyrethroid stimulation of ATPase activity and verapamil synergism of pyrethroid toxicity has been reported for several insect species (Aurade et al., 2006, 2010b; Buss et al., 2002; Hawthorne and Dively, 2011; Srinivas et al., 2005). 4.2.5. Neonicotinoids, diflubenzuron and fipronil Only three studies have associated ABC transporters with neonicotinoid transport and/or resistance. Microarray gene expression studies revealed that an ABCG transporter gene was upregulated in adult Bemisia tabaci flies of a thiamethoxam recent strain (Yang et al., 2013a,b). Hawthorne and Dively (2011), on the other hand, showed that verapamil synergized honeybee mortality to three neonicotinoids: acetamiprid, imidacloprid and thiacloprid but necessary experiments to link this finding to neonicotinoid resistance were not performed. Verapamil has also been shown to enhance the toxicity of diflubenzuron, a chitin synthesis inhibitor, by a factor of 16.4 in 4th instar larvae of the mosquito A. caspius (Porretta et al., 2008). Finally, several ABC transporters (belonging to five different ABC subfamilies) were upregulated in a P. xylostella strain resistant against fipronil, an insecticide belonging to the chemical class of phenylpyrazoles (You et al., 2013). 4.3. ABC transporters involved in transport of plant secondary compounds (allelochemicals) For several plant pathogenic fungi, it has been shown that ABC transporters mediate cellular tolerance to natural toxic plant compounds and/or virulence (Coleman and Mylonakis, 2009; Gardiner et al., 2013). Compared to fungi however, transport of plant allelochemicals by arthropod ABC transporters has only been marginally studied (Sorensen and Dearing, 2006) (Table 4). About 15 years ago it was shown that verapamil inhibited transport of nicotine and vinblastine to the lumen of Malpighian tubules of the tobacco hornworm Manduca sexta, indicating the involvement of an ABCB FT/P-gp transporter in the excretion of alkaloids in this lepidopteran species. A similar ABC transporter for nicotine excretion was also suggested to regulate transport over the BBB of the same insect species (Gaertner et al., 1998; Murray et al., 1994). In line with the latter findings, Govind et al. (2010) reported that ABC transporters were downregulated in M. sexta larvae that fed on tobacco plants that were transformed to silence nicotine biosynthesis compared to larvae that fed on wild-type tobacco plants. Arthropod ABCB FT/P-gps have also been reported to be involved in colchicine transport, a secondary metabolite from plants of the genus Colchicum (autumn crocus) and a well-known human P-gp inhibitor (Seelig and Landwojtowicz, 2000). D. melanogaster mdr49 deletion mutants showed increased sensitivity to colchicine (Wu et al., 1991) while Tapadia and Lakhotia (2005) showed that colchicine induced mdr49 expression in D. melanogaster larvae. 106 W. Dermauw, T. Van Leeuwen / Insect Biochemistry and Molecular Biology 45 (2014) 89e110 More recently, the group of Aurade et al. (2010a, 2011) found that several secondary plant compounds are potent inhibitors of P-gp activity. A curcumin mixture, extracted from Turmeric (Curcuma longa) powder, inhibited H. armigera P-gp ATPase activity by 90% and inhibited TMR transport in proteoliposomes containing H. armigera P-gp. In addition, it was found that H. armigera P-gp also showed large tryptophan fluorescence quenching in the presence of 10 mM of this curcuminoid mixture, suggesting that curcuminoids may bind with ATP-binding sites and steroid acting regions. Similar effects were also reported for the flavonoids morin, quercetin, and phloroglucinol (Aurade et al., 2011). Interestingly, H. armigera resistant larvae fed with diet supplemented with ethylparaoxon or cypermethrin (100 mM g1 diet), insecticides known to stimulate H. armigera P-gp ATPase activity (see Sections 4.2.1 and 4.2.4), and 500 mM morin or quercetin, showed a significant reduction in weight gain and survival rate compared to H. armigera larvae that were fed with diet supplemented with either ethylparaoxon, cypermethrin, morin or quercetin alone (Aurade et al., 2011). Furthermore, Petschenka et al. (2013) showed by immunostaining that an ABCB FT/P-gp transporter is expressed in the perineurium of the oleander hawkmoth, Daphnis nerii, and that verapamil suppressed the efflux of the cardenolide digoxin from the perineurium in both D. nerii and M. sexta, suggesting that a ABCB FT/P-gp transporter mediates the efflux of digoxin. Finally, it was found for the mountain pine beetle Dendroctonus ponderosae that an ABCG transporter was upregulated in adults fed on lodgepole pine host tree tissue compared to adults that were starved (Robert et al., 2013). 4.4. ABC transporters as targets for insecticides 4.4.1. SUR and benzoylphenylureas Next to the transport of insecticides and allelochemicals, ABC transporters have also been studied as target sites for insecticides. Probably the most well-known ABC transporter in arthropod toxicology is the sulfonylurea receptor (SUR, ABCC family, see Section 2.3 for detailed description), a conserved protein with orthologues in many invertebrate and vertebrate species including humans. In arthropods, SUR has been put forward as the target site of benzoylphenylureas (BPUs), a class of selective insecticides that inhibit chitin synthesis in insects and mites. The interference of BPUs with chitin synthesis was uncovered soon after their development and commercialization, as the lead compound diflubenzuron was shown to inhibit in vivo the incorporation of UDP-N-acetylglucosamine (the building blocks of the chitin polymer) into chitin (Post and Vincent, 1973). However, all further attempts to document a direct biochemical effect on any of the enzymes in the chitin synthesis pathway failed in the mid 1980s (Matsumura, 2010). The group of Matsumura has pioneered BPU mode of action studies and put forward the hypothesis of an interaction between BPUs and SUR (reviewed in Matsumura, 2010). However, biochemical evidence of such interaction is still missing and counter arguments for SUR as the target site of BPUs have recently been accumulating. First, although Drosophila is very sensitive to diflubenzuron, the SUR mRNA is not detected in the epidermis where chitin synthesis takes place (Gangishetti et al., 2009). More convincingly, by taking advantage of genetic resources in Drosophila, Meyer et al. (2012) show that SUR is dispensable for chitin synthesis in Drosophila, as larvae with completely eliminated SUR function display a normal cuticular architecture. In addition, although the beetle T. castaneum is a model insect for studying the effects of chitin synthesis inhibitors such as diflubenzuron (Merzendorfer et al., 2012), a SUR homolog has not been detected in this species or any other coleopteran ((Broehan et al., 2013), see also Section 2.3). Furthermore, RNAi knockdown of ABC transporters in T. castaneum did also not result in any phenotype with cuticle defects (Broehan et al., 2013). Together, these studies would argue against SUR as the target site of BPU. In contrast, the processive glycosyltransferase chitin synthase 1 (CHS1) has been shown to be the target site of etoxazole in the mite T. urticae. Although etoxazole is a diphenyl oxazoline acaricide that belongs to a different chemical family, the symptoms of poisoning strongly resemble those of BPUs in insects. Van Leeuwen et al. (2012) developed a population-level bulk segregant mapping method to map a monogenic, recessive etoxazole resistance with high resolution to a single locus in the T. urticae genome. Additional genetic evidence further supported a mutation in a conserved Cterminal domain of CHS1, which is highly conserved and might serve a non-catalytic but essential function. The authors suggest that CHS1 may be a target site for BPUs in insects as well, although similar mutations as documented in T. urticae have not been reported yet for any insect species. 4.4.2. ABCC2 and Bt mode of action and resistance Very recently, an ABC transporter (ABCC2) has been shown to be involved in resistance to insecticidal protein toxins from the bacterium B. thuringiensis (Bt toxins) (Heckel, 2012). The mode of action of Bt toxins (and the resistance mechanisms to Bt in insects) are of huge commercial value, given that millions of hectares have been planted with transgenic Bt crops such as maize and cotton (Tabashnik et al., 2013). Independent studies in several insect species including H. virescens, T. ni, P. xylostella, have associated mutations in ABCC2 with Bt resistance (Atsumi et al., 2012; Baxter et al., 2011; Gahan et al., 2010), recently reviewed by Heckel (2012). The most convincing study by Atsumi et al. (2012) used germ line transformation of the silkworm B. mori to provide functional evidence that a single tyrosine insertion in the extracellular loop of a TMD was sufficient to confer Bt resistance. Recently it was also shown, through ectopical expression of B. mori ABCC2 in Sf9 cells, that B. mori ABCC2 functions as a receptor for Cry1A toxins (Tanaka et al., 2013). The mode of action of Bt toxins is a complex multi-step process, which involves activation of the pro-toxin by proteases after interaction with 12-cadherin domain proteins, formation of an oligomeric pre-pore structure and several binding steps that involve several midgut membrane proteins (see Bravo et al., 2011; Gahan et al., 2010). It has been proposed that ABCC2 plays a role in the insertion of the pre-pore structure into the midgut membrane. The transporter in the open state is exposed to the outside of the cell (see Section 1) and could interact with extended helices of the pre-pore Bt structure, followed by irreversible insertion into the membrane upon closure (Heckel, 2012). Given the interest in Bt resistance mechanisms, it can be expected that the precise mechanism of this interaction will be the subject of extended future research. Acknowledgments T.V.L. and W.D. are postdoctoral fellows of the Fund for Scientific Research Flanders (FWO). 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