Experiment 10 Molecular Geometry and Molecular Models molecular geomometry background.w pd INTENT The purpose of this experiment is to introduce to you some of the basic theories and techniques used by chemists to predict the electronic structure and geometries of molecules and complex ions. These include Lewis structures and Valence Shell Electron Pair Repulsion (VSEPR) Theories, as well as the concepts of hybridization, isomerism, and resonance. INTRODUCTION You have been studying the rules which help us to predict whether combinations of atoms produce ionic or covalent substances and what the formulas of those substances might be. Equally important to the chemical and physical properties of many substances is the arrangement of their atoms in space (their geometries). Biology courses have taught you that the shapes of DNA, proteins and other biological molecules determine their biological behavior. Earlier in CHM1025, you saw that a variation in the arrangement of carbon atoms produces the great difference in properties of transparent, colorless diamond and opaque, black graphite. Similarly, the arrangement of atoms in a simple molecule like carbon dioxide can determine its molecular polarity, and by this, its melting temperature (mp), boiling temperature (bp), heat of fusion, heat of vaporization, and solubility characteristics. DISCUSSION To start, you will be asked to draw Lewis diagrams for specific molecules and certain ions that contain covalent bonds. As you go through these exercises, some new concepts will be introduced. You will have to consider the existence of isomers and resonance forms in some of the examples. You will then predict the geometry of the ions and molecules in terms of Valence Shell Electron Pair Repulsion (VSEPR) theory (see Class Handout) and to describe the orbitals used for bonding by the central atom using atomic orbital hybridization theory (CHM2045 topic). You will also actually assemble 3-D models of all of the examples and from these draw conventional 2-D pictures of the 3-D structures. 97 Data / Report Experiment 10 Name: Partner: CHM 1025 Section: Date: Molecular Geometry and Molecular Models EXPERIMENTAL Part A: Lewis Diagrams and Geometry Follow the procedure outlined below, first by practicing with the lettered, worked-out examples, A!E, on page 101 and then with the numbered, unknown chemical formulas, 1-25, beginning on page 102. 1. To begin, count up the total number of valence electrons possessed by the atoms in your formula. Place the number in the column labeled "# of val. e& 's." 2. On a separate sheet of scrap paper, draw a correct Lewis of your formula. Use a dash for each shared pair of valence electrons and a pair of dots for each non-bonding pair of valence electrons. Check for the correct number of atoms and the number of valence electrons. Draw only those structures which have minimum energies, as determined by formal charge considerations, possible obeyance of the noble gas configuration, and the tendency to avoid small ring strain. Transpose this diagram to the third column, labeled "Structure of one isomer or resonance form." When the formula you are working on shows the existence of isomers or resonance forms, draw each of these in a column labeled " Additional isomer or resonance form." 3. For each isomer construct a molecular model with your kit, including the non-bonding electrons (one plastic connector for each pair of electrons). Use a short connector for a single bond and two long connectors if a double bond exists. Using conventional atomic symbols--dashes, dotted lines, wedges and dots (see the examples on page 101)--carefully sketch the model of one of your isomers or resonance forms in the column labeled "3-D Structure of one isomer or resonance form." 4. For each of your 3-D structures, observe the number of electron "zones" (sigma bonds and lone pairs only) around the central atom and use the principles of the VSEPR theory to determine the spatial geometry of the electron zones. Enter the name of this geometry in the column labeled "Name of molec. geometry." 5. Now, for each of your 3-D structures, determine the hybridization of the central atom(s) (e.g., sp3, sp3d2, etc.) and place this information in the column labeled "Central atom(s) hybridization." 6. Finally, to determine the overall polarity of each MOLECULE, begin by determining each bond dipole moment by comparing the electronegativities of the two atoms in the bond. Then, using your 3-D VSEPR geometry, determine whether the overall molecule is polar or non-polar. If the molecule is polar, label that structure with a "P," and if it is non-polar, label it with an "NP." The concept of molecular polarity applies only to molecules and, therefore, if the species is an ion it should be labeled as "DNA" for "does not apply." 100 Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP Name of molec geometry Central & atom(s) hybridization Tetrahedral A. CH4 8 sp3 Nonpolar Tetrahedral on C B. C2 H4 Cl2 26 sp3 Polar Trigonal Planar on C C. C2 H2 Cl2 24 sp2 Polar Trigonal Planar on C D. [CO3 ]–2 24 sp2 Octahedral on S 48 E. SF6 Nonpolar sp3d2 102 Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 1. CH3 Cl 2. CH2 Cl2 3. NH3 4. [H3 O]+ 5. H2 O 103 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP Name of molec geometry Central & atom(s) hybridization Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 6. C2 H6 7. C4 H10 8. C3 H8 O 9. C2 H2 10. N2 104 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP Name of molec geometry Central & atom(s) hybridization Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 11. BeCl2 B e is central atom 12. CO2 C is central atom 13. [NO3 ]– N is central atom 14. N2 O N is central atom 15. O3 105 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP Name of molec geometry Central & atom(s) hybridization Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP 16. SO2 S is central atom W ithout m aking a m odel 17. CH3 CO2 & T his ion is called the A cetate ion 18. BrF3 B r is central atom 19. [XeF5 ]+ Xe is central atom 20. [BrF4 ]– B r is central atom 106 Name of molec geometry Central & atom(s) hybridization Formula # of val. e& 's Lewis structure of one isomer or resonance form Lewis structure of an additional isomer or resonance form Lewis structure of an additional isomer or resonance form (IF NECESSARY) (IF NECESSARY) 21. 22. 23. 24. 25. 107 3-D Structure of one isomer or resonance form If molecular, indicate polarity with P or NP Name of molec geometry Central & atom(s) hybridization Data / Report Experiment 10 CHM 1025 Name: Partner: Section: Date: Molecular Geometry and Molecular Models 1) As the bonding between two atoms changes from single to double, then to triple, what happens to the strength holding the two atoms together? #1 2) Given the VSEPR notation for the following compounds state if each is polar or nonpolar. Explain why for each. a) SF2 , AX2E2 b) PF41! , AX4E c) SCl2F4 , AX6 108 Part B: Modeling of Chemical Reactions For each of the following examples, begin by filling in the blanks to balance the chemical equation. Then construct the reactants (all of them) with your model kit and sketch them beneath their respective formulas. Now tear them apart and, using the same balls and connectors, construct the products (all of them) and sketch them. (You may wish to substitute a small connector for a long connector but do not use any additional connectors or balls.) You have now visualized the conservation of mass. You may also now see the necessity in a balanced equation for the correct formulas and coefficients which provide the same number and type of atoms on both side of the reaction. 1. Combustion of hydrogen: (unbalanced) ____ H2 ____ O2 + ) xxv ____ H2O 2. Combustion of methane: (unbalanced) ____ CH4 + ____ O2 ) xxv ____ H2O + ____ CO2 In the following examples it will be necessary to use a different-colored ball for the phosphorus atom whenever the number of bonds to phosphorus changes. Use a blue-colored ball for phosphorus in PF3, and then substitute a brown-colored ball for phosphorus in PF5. Finally, substitute a silver-colored ball for phosphorus in PF6& . 3. Reaction of fluorine and phosphorus trifluoride: (unbalanced) ____ PF3 + ____ F2 xxv ____ PF5 4. Reaction of fluoride ion and phosphorus pentafluoride: (unbalanced) ____ PF5 98 + ____ F& xxv ____ PF6& Finally, remember that you have been working with models (models that emphasize molecular geometry only). Atoms are not hard, plastic spheres and electron pairs are not plastic connectors. With this mind, describe below what your models do not reveal about, or how they give the wrong impression of, real molecules and polyatomic ions. OK: 99
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