J Antimicrob Chemother 2013; 68 Suppl 1: i57 – i65 doi:10.1093/jac/dkt027 Molecular epidemiology of extended-spectrum b-lactamase-, AmpC b-lactamase- and carbapenemase-producing Escherichia coli and Klebsiella pneumoniae isolated from Canadian hospitals over a 5 year period: CANWARD 2007–11 Andrew J. Denisuik1*, Philippe R. S. Lagacé-Wiens1,2, Johann D. Pitout3,4, Michael R. Mulvey1,5, Patricia J. Simner6, Franil Tailor1, James A. Karlowsky1,7, Daryl J. Hoban1,7, Heather J. Adam1,7 and George G. Zhanel1 on behalf of the Canadian Antimicrobial Resistance Alliance (CARA)† 1 Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada R3E 0J9; Department of Microbiology, St Boniface General Hospital/Diagnostic Services of Manitoba, Winnipeg, Manitoba, Canada R2H 2A6; 3 Division of Microbiology, Calgary Laboratory Services, Calgary, Alberta, Canada T2L 2K8; 4Department of Pathology and Laboratory Medicine, Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada T2N 4N1; 5National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada R3E 3R2; 6Department of Clinical Microbiology, Mayo Clinic, Rochester, Minnesota, USA 55905; 7Department of Clinical Microbiology, Health Sciences Centre/Diagnostic Services of Manitoba, Winnipeg, Manitoba, Canada R3A 1R9 2 *Corresponding author. Department of Clinical Microbiology, Health Sciences Centre, MS673-820 Sherbrook Street, Winnipeg, Manitoba, Canada R3A 1R9. Tel: +1-204-787-4684; Fax: +1-204-787-4699; E-mail: [email protected] †Members are listed in the Acknowledgements section. Objectives: To assess the proportion of Escherichia coli and Klebsiella pneumoniae from Canadian hospitals that produce extended-spectrum b-lactamases (ESBLs), AmpC b-lactamases and carbapenemases, as well as to describe the patterns of antibiotic resistance and molecular characteristics of these organisms. Methods: Some 5451 E. coli and 1659 K. pneumoniae were collected from 2007 to 2011 inclusive as part of the ongoing CANWARD national surveillance study. Antimicrobial susceptibility testing was performed to detect putative ESBL, AmpC and carbapenemase producers, which were then further characterized by PCR and sequencing to detect resistance genes. In addition, isolates were characterized by PFGE and an allelespecific PCR to detect isolates of sequence type (ST) 131. Results: The proportion of ESBL-producing E. coli (2007, 3.4%; 2011, 7.1%), AmpC-producing E. coli (2007, 0.7%; 2011, 2.9%) and ESBL-producing K. pneumoniae (2007, 1.5%; 2011, 4.0%) among the isolates collected increased during the study period. The majority of ESBL-producing E. coli (.95%), AmpC-producing E. coli (.97%) and ESBL-producing K. pneumoniae (.89%) remained susceptible to colistin, amikacin, ertapenem and meropenem. Isolates were generally unrelated by PFGE (,80% similarity); however, ST131 was identified among 55.8% and 28.7% (P,0.001) of ESBL- and AmpC-producing E. coli, respectively. CTX-M-15 was the dominant genotype in both ESBL-producing E. coli (66.2%) and ESBL-producing K. pneumoniae (50.0%), while the dominant genotype in AmpC-producing E. coli was CMY-2 (55.7%). Carbapenemase production was identified in 0.04% (n¼ 2) of E. coli and 0.06% (n¼ 1) of K. pneumoniae, all of which produced KPC-3. Conclusions: The proportion of ESBL- and AmpC-producing E. coli and K. pneumoniae increased significantly during the study period, while the number of carbapenemase producers remained low (,1%). Compared with AmpCproducing E. coli, ESBL-producing E. coli were significantly associated with multidrug resistance and the ST131 clone. Keywords: ESBLs, Escherichia coli, Klebsiella pneumoniae, surveillance Introduction The b-lactams are a critically important class of antimicrobials utilized worldwide for the treatment of serious hospital- and community-acquired infections.1 Among Gram-negative organisms, b-lactamase production represents the single greatest contributor to b-lactam resistance, including resistance to the oxyimino-cephalosporins and carbapenems.2 Within the # The Author 2013. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: [email protected] i57 Denisuik et al. Enterobacteriaceae, oxyimino-cephalosporin resistance is largely due to the production of extended-spectrum b-lactamases (ESBLs) or AmpC b-lactamases (AmpC) and, in the last decade, Enterobacteriaceae producing CTX-M-type ESBLs have increasingly become a significant cause of multidrug-resistant urinary tract and bloodstream infections.3 The emergence of such organisms is in large part due to the spread of a single pandemic clone, Escherichia coli O25b:H4 sequence type (ST) 131.4 The production and transfer of ESBL enzymes in Enterobacteriaceae is largely mediated by mobile elements, specifically conjugative plasmids, allowing further dissemination.4 In E. coli, AmpC-mediated resistance can be the result of plasmid-encoded AmpC b-lactamases or constitutive overexpression of the chromosomal ampC gene due to mutations within the promoter/attenuator region.5 While acquired AmpC b-lactamases are generally less prevalent than ESBLs, they remain clinically important due to their ability to cause treatment failure and their difficulty in laboratory detection.6,7 In addition, the presence of inducible chromosomal AmpC b-lactamases in many members of the Enterobacteriaceae presents the possibility of resistance developing during treatment due to mutant selection. Historically, the carbapenems have been reserved as last-line agents in the treatment of serious or highly resistant infections.8 While both ESBL and AmpC enzymes generally lack the ability to hydrolyse the carbapenems, reduced susceptibility or resistance can arise when such enzymes are accompanied by decreased outer membrane permeability. More importantly, b-lactamase enzymes with carbapenemase activity have spread worldwide and are beginning to compromise the use of these agents.9 Infections caused by b-lactamase-producing Enterobacteriaceae have serious implications for both public health and infection control practices. These infections are often associated with delays in the administration of effective therapy, as b-lactam resistance often undermines empirical treatment regimens. In patients with life-threatening infections, such as sepsis, delayed therapy can greatly increase the risk of infection-related mortality up to 5-fold.10 Furthermore, b-lactamase-producing Enterobacteriaceae have demonstrated an overwhelming ability to both disseminate and persist within the hospital and community settings, and their frequent association with multidrug resistance (MDR) can severely limit the therapeutic options available to clinicians. Materials and methods colistin (susceptible, ≤2 mg/L; resistant, ≥4 mg/L) and tigecycline (susceptible, ≤2 mg/L; intermediate, 4 mg/L; resistant, ≥8 mg/L). MDR is defined as resistance to at least three different antimicrobial classes and extreme drug resistance (XDR) is defined as resistance to at least five different antimicrobial classes, as described by Magiorakos et al.14 Putative ESBL producers were identified as any E. coli or Klebsiella pneumoniae isolate with a ceftriaxone and/or ceftazidime MIC of ≥1 mg/L.13 All putative ESBL producers were confirmed using the CLSI phenotypic confirmatory disc test.13 An AmpC phenotype in this study was defined as any E. coli with a ceftriaxone and/or ceftazidime MIC of ≥1 mg/L and a cefoxitin MIC ≥32 mg/L that is ESBL negative by the CLSI confirmatory disc test. In total, cefoxitin was tested against 4449 of 5451 E. coli isolates collected, as only 558 of 1560 E. coli in 2007 were tested against this agent. Putative carbapenemase producers were identified as any E. coli or K. pneumoniae with an ertapenem MIC ≥0.5 mg/L. Molecular characterization of ESBL-producing E. coli and K. pneumoniae All phenotypically confirmed ESBL-producing E. coli and K. pneumoniae were screened by PCR and sequencing to detect the presence of blaSHV, blaTEM, blaCTX-M and blaOXA variants, as previously described.15 The genotypic designation ‘unknown’ was applied to any ESBL-producing isolate that was PCR negative for the enzyme families listed above. Molecular characterization of AmpC-producing E. coli Putative AmpC-producing E. coli were screened by PCR and sequencing for the presence of blaENT, blaDHA, blaFOX and blaCIT acquired AmpC b-lactamase enzymes, as previously described.16 Sequencing for the detection of promoter/attenuator mutations within the chromosomal ampC gene was carried out on any isolate that was PCR negative for all acquired AmpC b-lactamases listed above, as previously described.17 Molecular characterization of carbapenemase-producing E. coli and K. pneumoniae All putative carbapenemase-producing E. coli and K. pneumoniae were screened for the presence of blaKPC, blaIMP, blaVIM, blaIMI, blaNDM, blaGES and blaOXA-48 by multiplex PCR, as described by Mataseje et al.18 Isolates that were PCR positive for blaKPC were reamplified using the primers KPC-F (5′ -TGTCACTGTATCGCCGTC-3′ ) and KPC-R (5′ -CTCAGTGCTCTACAGAAAA CC-3′ ) to yield a 1000 bp product, as described by Yigit et al.19 Sequencing was carried out using the primers KPC-F, KPC-R, KPC1 (5′ -ATGTCACTG TATCGCCGTC-3′ ) and KPC2 (5′ -AATCCCTCGAGCGCGAGT-3′ ). Bacterial isolates Bacterial isolates were collected as part of the national, ongoing CANWARD study from 2007 to 2011, as previously outlined by Zhanel et al.11 The CANWARD study receives annual approval by the University of Manitoba Research Ethics Board (H2009:059). PFGE and ST131 detection To determine whether clonal spread influences the dissemination of ESBL- and AmpC-producing E. coli and K. pneumoniae in Canadian hospitals, PFGE was carried out as described by Mulvey et al.15 E. coli isolates of ST131 were identified using an allele-specific PCR for the pabB gene.20 Antimicrobial susceptibility testing Antimicrobial susceptibility testing was performed using the broth microdilution method in accordance with CLSI guidelines.12 Following two subcultures from frozen stock, the MICs of the antibiotics tested were determined using in-house, custom-designed 96-well microtitre panels, as previously described.11 MIC interpretive standards were defined by CLSI (2012) breakpoints.13 FDA interpretative criteria were used for i58 Statistical analysis Statistical significance was calculated by the x2 test, binary logistic regression or Fisher’s exact test in the case of small sample sizes using the SPSS statistics (Version 20) program (IBM Corporation). Statistical significance in this study is defined as a P value ≤0.05; any P value .0.05 has been denoted not statistically significant (NS) throughout this article. JAC CANWARD ESBL/AmpC/KPC 2007 – 11 GenBank accession number One novel SHV b-lactamase was discovered as part of the study and is designated SHV-168 (www.lahey.org/studies). The compete nucleotide sequence of SHV-168 has been deposited in GenBank under the accession number JX870080. Results Proportion of ESBL-, AmpC- and carbapenemase-producing E. coli and K. pneumoniae among isolates collected The national and regional proportions of the E. coli and K. pneumoniae isolates collected that produced ESBLs, AmpC b-lactamases and carbapenemases from 2007 to 2011 are summarized in Table 1. Between 2007 and 2011, 27 123 bacterial isolates were collected as part of the ongoing CANWARD national surveillance study, including a total of 5451 E. coli (2007, 1560; 2008, 1131; 2009, 1097; 2010, 1017; and 2011, 646) and 1659 K. pneumoniae (2007, 455; 2008, 314; 2009, 356; 2010, 307; and 2011, 227), of which 8.5% (462/5451) of E. coli and 9.9% (165/1659) of K. pneumoniae collected had ceftriaxone and/or ceftazidime MICs of ≥1 mg/L (P¼ NS). In total, 4.2% (231/5451) and 2.9% (48/1659) of E. coli and K. pneumoniae, respectively, were phenotypically confirmed as ESBL producers by the CLSI confirmatory disc test, while 2.6% (115/4449) of E. coli demonstrated an AmpC phenotype. The proportion of E. coli isolates that produced ESBLs was variable throughout the study period, with a significant national increase being observed from 2007 to 2011 (2007, 3.4%; 2008, 4.9%; 2009, 4.3%; 2010, 2.9%; and 2011, 7.1%) (P,0.001). This overall trend was generated by increases occurring from 2007 to 2008 (P ¼ NS) and, most notably, from 2010 to 2011 (P,0.001). Increases in ESBL-producing E. coli were observed in all regions (2007 compared with 2011); however, only those observed in the British Columbia/Alberta, Ontario and Quebec regions were statistically significant (P ¼ 0.040, P¼ 0.009 and P ¼ 0.018, respectively). Similarly, the overall proportion of K. pneumoniae isolates that produced ESBLs increased significantly throughout the study period (2007, 1.5%; 2008, 3.2%; 2009, 3.4%; 2010, 3.3%; and 2011, 4.0%) (P¼ 0.047), though on a regional scale, only the increase observed in Ontario was found to be statistically significant (P ¼ 0.01). AmpC-producing E. coli also demonstrated a statistically significant increase between the first (2007) and second (2008) year of this study (2007, 0.7%; 2008, 3.1%; 2009, 2.7%; 2010, 2.7%; and 2011, 2.9%) (P ¼ 0.004), and significant increases were observed in the British Columbia/Alberta (2007 compared with 2009/2010) and Ontario (2007 compared with 2008) regions (P ¼ 0.005 and P ¼ 0.047, respectively). Table 1. The national and regional proportion of E. coli and K. pneumoniae isolates collected from Canadian hospitals that produce ESBLs, AmpC b-lactamases and carbapenemases CANWARD study year: % (no. in cohort/total no. of species collected) Cohort (n) region 2007 2008 2009 2010 2011 7.1 (46/646) 7.1 (7/99) 3.8 (3/79) 11.0 (23/210) 4.8 (8/167) 5.5 (5/91) ESBL E. coli (231) national 3.4 (53/1560) BC/AB 4.4 (12/271) SK/MB 1.8 (5/285) ON 6.6 (29/442) QC 1.3 (6/456) MAR 0.9 (1/106) 4.9 7.6 4.7 5.8 2.2 3.1 (55/1131) (18/237) (11/235) (17/292) (6/270) (3/97) 4.3 (47/1097) 9.4 (14/149) 1.4 (2/143) 6.1 (20/328) 1.5 (5/335) 4.2 (6/142) 2.9 (30/1017) 1.9 (3/157) 2.8 (4/141) 4.6 (12/259) 1.6 (5/320) 4.3 (6/140) AmpC E. coli (115) national 0.7 (4/558b) BC/AB 0.8 (1/126) SK/MB 1.3 (1/80) ON 0.0 (0/92) QC 0.6 (1/154) MAR 0.9 (1/106) 3.1 3.8 2.6 3.8 3.0 1.0 (35/1131) (9/237) (6/235) (11/292) (8/270) (1/97) 2.7 (30/1097) 5.4 (8/149) 1.4 (2/143) 1.8 (6/328) 2.7 (9/335) 3.5 (5/142) 2.7 (27/1017) 7.6 (12/157) 2.8 (4/141) 1.9 (5/259) 0.3 (1/320) 3.6 (5/140) 2.9 1.0 5.1 2.4 3.6 3.3 ESBL K. pneumoniae (48) national 1.5 (7/455) BC/AB 1.3 (1/76) SK/MB 0.0 (0/67) ON 1.4 (2/142) QC 3.2 (4/126) MAR 0.0 (0/44) 3.2 3.9 0.0 5.2 2.7 0.0 (10/314) (3/77) (0/40) (5/96) (2/73) (0/28) 3.4 (12/356) 1.9 (1/54) 0.0 (0/46) 7.9 (10/126) 0.0 (0/96) 2.9 (1/34) 3.3 (10/307) 2.9 (1/34) 4.4 (2/45) 6.3 (6/96) 1.2 (1/81) 0.0 (0/51) 4.0 3.0 0.0 6.8 4.4 0.0 2007– 11 P valuea 4.2 5.9 2.8 6.6 1.9 3.7 (231/5451) (54/913) (25/883) (101/1531) (30/1548) (21/576) ,0.001 0.040 NS 0.009 0.018 NS (19/646) (1/99) (4/79) (5/210) (6/167) (3/91) 2.6 4.0 2.5 2.3 2.0 2.6 (115/4449) (31/768) (17/678) (27/1181) (25/1246) (15/576) 0.004 0.005 NS 0.047 NS NS (9/227) (1/33) (0/24) (5/73) (3/68) (0/29) 2.9 2.6 0.9 5.3 2.3 0.5 (48/1659) (7/274) (2/222) (28/533) (10/444) (1/186) 0.047 NS NS 0.010 NS NS BC, British Columbia; AB, Alberta; SK, Saskatchewan; MB, Manitoba; ON, Ontario; QC, Quebec; MAR, Maritimes (New Brunswick/Nova Scotia); NS, not statistically significant (P.0.05). a P value comparing the rates of ESBL-producing E. coli, ESBL-producing K. pneumoniae and AmpC-producing E. coli from 2007 to 2011. b Cefoxitin was tested against 558 E. coli during CANWARD 2007. i59 Denisuik et al. Nationally, 0.04% (2/5451) of E. coli and 0.06% (1/1659) of K. pneumoniae were found to produce a carbapenemase (all harbouring blaKPC). Both KPC-producing E. coli isolates were collected from Quebec in temporally independent cases (2010 and 2011, respectively). The one KPC-producing K. pneumoniae identified was isolated in 2009 from a patient in Ontario. Patient demographics Patient demographics associated with ESBL- and AmpCproducing E. coli and K. pneumoniae are summarized in Table 2. Overall, both ESBL- and non-ESBL-producing E. coli infections occurred more frequently in females [55.0% (127/231) and 61.4% (3203/5220), respectively]; however, no significant difference was observed between genders. ESBL-producing E. coli were significantly more likely to be isolated from the ≥65 years old age group [55.8% (129/231) versus 47.9% (2501/5220)] (P ¼ 0.018) and significantly less likely to be isolated from individuals ≤17 years of age [2.6% (6/231) versus 10.9% (570/5220)] (P ≤ 0.001) as compared with non-ESBL-producing E. coli. The incidence of ESBL-producing E. coli was highest among inpatients, with the majority [38.5% (89/231)] being isolated from patients on medical wards. ESBL-producing E. coli were distributed across all specimen sources, with the majority being isolated from blood [50.2% (116/231)] and urine [35.1% (81/231)]. Furthermore, the frequency of ESBL-producing E. coli isolated from respiratory Table 2. Patient demographics associated with ESBL-producing E. coli, AmpC-producing E. coli and ESBL-producing K. pneumoniae isolated from Canadian hospitals Cohort: % (no. in cohort/total no. collected) Parameter value ESBL E. coli (n¼231) AmpC E. coli (n ¼115) ESBL K. pneumoniae (n¼48) Gender male female 4.9 (104/2120) 3.8 (127/3331) 2.6 (46/1737) 2.5 (69/2712) 3.3 (30/906) 2.4 (18/753) Age (years) ≤17 18– 64 ≥65 1.0 (6/576) 4.3 (96/2244) 4.9 (129/2631) 2.2 (10/446) 2.6 (48/1821) 2.6 (57/2182) 3.9 (6/155) 4.0 (27/677) 1.8 (15/827) 1.9 (14/755) 2.0 (35/1716) 2.1 (4/191) 1.2 (5/433) 3.8 (16/420) 3.2 (40/1269) 4.1 (13/318) 4.0 (22/547) 3.5 (10/289) 2.4 (4/170) 2.4 (59/2413) 2.5 (40/1579) 3.7 (6/163) 3.4 (10/294) 2.7 (24/890) 3.5 (13/372) 3.8 (3/80) 2.5 (8/317) Hospital location clinic/office 3.3 (31/943) emergency 3.0 (62/2081) room ICU 6.1 (31/506) medical 5.8 (89/1544) ward surgical 4.8 (18/377) ward Specimen source blood 4.2 (116/2733) urine 3.8 (81/2141) wound 4.0 (8/198) respiratory 6.9 (26/379) i60 specimens was found to be significantly greater when compared with non-ESBL-producing E. coli [11.3% (26/231) versus 6.8% (353/5220)] (P ¼0.009). ESBL-producing K. pneumoniae were isolated more frequently from males [62.5% (30/48)], which significantly differed from ESBL-producing E. coli (P ¼ 0.020), but not from non-ESBLproducing K. pneumoniae [54.4% (876/1611)] (P ¼ NS). The majority of ESBL-producing K. pneumoniae were isolated from patients 18 –64 years of age [56.3% (27/48)] as compared with ESBLproducing E. coli [41.6% (96/231)] (P ¼ 0.044) and non-ESBLproducing K. pneumoniae [40.3% (650/1611)] (P ¼ 0.027), where the majority of isolates were collected from patients ≥65 years of age (55.8% and 50.4%, respectively). ESBL-producing K. pneumoniae were isolated most frequently from patients on medical wards [45.8% (22/48)] and occurred at a significantly reduced rate in the intensive care unit (ICU) [27.1% (13/48)] (P ¼ 0.020) and emergency room [10.4% (5/48)] (P ¼ 0.009) as compared with ESBL-producing E. coli. As with ESBL-producing E. coli, ESBL-producing K. pneumoniae were distributed across all specimen sources, with the majority [50.0% (24/48)] isolated from blood. No significant differences were observed with regard to specimen source when compared with ESBL-producing E. coli and non-ESBL-producing K. pneumoniae. AmpC-producing isolates were isolated more frequently from females [60.0% (69/115)], with no significant differences observed compared with ESBL- and non-ESBL-non-AmpC-producing E. coli. AmpC-producing E. coli were isolated most frequently from patients ≥65 years of age on medical wards with bloodstream infections. No significant demographic differences were observed comparing AmpC-producing E. coli with non-ESBL-non-AmpCproducing E. coli. However, the frequency of AmpC-producing E. coli infections was significantly higher in the ≤17 years old age group compared with ESBL-producing E. coli [8.7% (10/115) versus 2.6% (6/231)] (P¼ 0.014). Two KPC-producing E. coli were isolated from respiratory specimens collected from male patients aged 77 and 74 years, respectively, located in the ICU. One KPC-producing K. pneumoniae isolate was obtained from the blood culture of a 67-year-old female patient located on a medical ward. Antimicrobial susceptibility The activities of the antimicrobials tested against ESBL- and AmpC-producing E. coli and K. pneumoniae are summarized in Table 3. The antibiotics with the greatest activity against the isolates in this study were amikacin, meropenem, ertapenem and colistin. Both ESBL- and AmpC-producing E. coli also demonstrated high susceptibility (.93%) to piperacillin/tazobactam; however, in the case of ESBL-producing K. pneumoniae, susceptibility decreased to 66.7%, with a large number (18.8%) of isolates falling in the intermediate range. Similarly, while tigecycline demonstrated excellent activity against ESBL- and AmpCproducing E. coli (99.6% and 100% susceptibility, respectively), ESBL-producing K. pneumoniae were significantly less likely to be susceptible to this agent (83.3% susceptibility, P,0.001). A multidrug-resistant phenotype was observed in 78.8% (182/231) and 68.8% (33/48) of ESBL-producing E. coli and K. pneumoniae, respectively (P ¼ NS), while AmpC-producing E. coli were significantly less likely to be multidrug resistant when compared with ESBL-producing E. coli (33.9%, P,0.001). The frequency of MDR JAC CANWARD ESBL/AmpC/KPC 2007 – 11 Table 3. Antimicrobial activity against ESBL-producing E. coli, AmpC-producing E. coli and ESBL-producing K. pneumoniae MIC (mg/L) MIC interpretation Cohort (n) antibiotic MIC50 MIC90 Min. Max. %S %I %R ESBL E. coli (231) AMC cefazolin cefoxitin ceftriaxone ceftazidime cefepime TZP ertapenem meropenem ciprofloxacin amikacin gentamicin tigecycline SXT colistin 8 .128 8 .64 16 8 4 ≤0.06 ≤0.12 .16 4 4 0.5 .8 0.5 16 .128 16 .64 .32 .32 16 0.25 ≤0.12 .16 16 .32 1 .8 1 1 16 0.5 ≤0.25 ≤0.5 ≤1 ≤1 ≤0.06 ≤0.12 ≤0.06 ≤2 ≤0.5 0.12 ≤0.12 ≤0.06 .32 .128 .32 .64 .32 .32 512 4 1 .16 .64 .32 4 .8 4 62.3 33.8 81.8 1.3 36.5 53.2 93.1 97.4 100.0 10.8 95.7 51.1 99.6 29.9 99.6 10.0 1.7 7.3 24.9 4.8 1.3 3.9 100.0 8.2 97.0 56.2 21.9 2.2 1.3 ESBL K. pneumoniae (48) AMC cefazolin cefoxitin ceftriaxone ceftazidime cefepime TZP ertapenem meropenem ciprofloxacin amikacin gentamicin tigecycline SXT colistin 16 .128 8 .64 .32 8 16 0.06 ≤0.12 8 ≤2 2 1 .8 0.5 32 .128 .32 .64 .32 .32 256 0.5 ≤0.12 .16 32 .32 4 .8 1 2 16 2 ≤0.25 1 ≤1 2 ≤0.06 ≤0.12 ≤0.06 ≤2 ≤0.5 0.5 ≤0.12 0.25 .32 .128 .32 .64 .32 .32 .512 1 0.12 .16 .64 .32 16 .8 .16 47.7 34.1 77.3 14.6 29.3 57.9 66.7 97.7 100.0 27.1 89.6 52.1 83.3 31.3 97.7 11.4 8.3 2.4 7.9 18.8 2.3 AmpC E. coli (115) AMC cefazolin cefoxitin ceftriaxone ceftazidime cefepime TZP ertapenem meropenem ciprofloxacin amikacin gentamicin tigecycline SXT colistin 16 .128 .32 8 16 ≤0.25 4 ≤0.06 ≤0.06 ≤0.06 2 ≤0.5 0.5 0.25 0.25 .32 .128 .32 32 .32 1 16 0.25 ≤0.06 .16 4 32 1 .8 0.5 1 0.5 32 ≤0.25 1 ≤0.25 ≤1 ≤0.06 ≤0.06 ≤0.06 ≤2 ≤0.5 0.12 ≤0.12 0.12 .32 .128 .32 .64 .32 .32 256 1 0.12 .16 .64 .32 2 .8 1 0.9 3.9 0.4 0.4 88.3 0.4 48.5 70.1 0.4 10.4 2.1 8.3 27.8 0.9 22.6 3.5 40.0 43.2 96.6 91.3 97.4 100.0 61.7 98.3 83.5 100.0 66.1 100.0 2.6 5.4 1.1 7.0 2.6 0.9 18.2 100.0 11.4 77.1 68.3 34.2 14.6 62.5 8.3 47.9 8.3 68.8 2.3 49.6 95.7 100.0 57.4 51.4 2.3 1.7 37.4 1.7 16.5 33.9 % S, % susceptible; % I, % intermediate; % R, % resistant; AMC, amoxicillin/clavulanic acid; TZP, piperacillin/tazobactam; SXT, trimethoprim/ sulfamethoxazole. i61 Denisuik et al. among ESBL-producing E. coli increased throughout the study period, from 77.4% in 2007 to 82.6% in 2011 (P ¼ NS). Some 2.6% (6/231) of ESBL-producing E. coli and 10.4% (5/48) of ESBL-producing K. pneumoniae demonstrated XDR, while no AmpC-producing E. coli were extremely drug resistant. All KPC-producing isolates demonstrated in vitro resistance to amoxicillin/clavulanate, cefazolin, ceftriaxone, ceftazidime, piperacillin/tazobactam, ertapenem, ciprofloxacin and trimethoprim/sulfamethoxazole, while all remained susceptible to colistin and tigecycline. Only the one KPC-producing K. pneumoniae isolate demonstrated in vitro resistance to meropenem according to current CLSI breakpoints (MIC 4 mg/L), with both E. coli isolates having meropenem MICs of 1 mg/L. Molecular characterization The genotypic characterization of ESBL-producing E. coli and K. pneumoniae is summarized in Tables 4 and 5. Among ESBLTable 4. The genotypic characterization of ESBL-producing E. coli Family: % of total (n) variant: % of total (n) CTX-M: 94.4 (218) CTX-M-15: 66.2 (153) CTX-M-15 + TEM-1 + OXA-1 + TEM-1, OXA-1 CTX-M-14: 19.5 (45) CTX-M-14 + TEM-1 + OXA-1 CTX-M-27: 6.5 (15) CTX-M-27 + TEM-1 CTX-M-24: 0.9 (2) CTX-M-24 + TEM-1 CTX-M-3: 0.9 (2) + TEM-1 + TEM-1, OXA-1 CTX-M-65: 0.4 (1) CTX-M-65 SHV: 3.0 (7) SHV-12: 1.7 (4) SHV-12 + TEM-1 SHV-2a: 1.3 (3) SHV-2a % of ESBL E. coli (n) 9.1 (21) 7.8 (18) 36.4 (84) 13.0 (30) 6.5 (15) 12.1 (28) 0.9 (2) 5.6 (13) 0.9 (2) 0.4 (1) 0.4 (1) 0.4 (1) 0.4 (1) 0.4 (1) 0.4 (1) 1.3 (3) 1.3 (3) TEM: 0.4 (1) TEM-12: 0.4 (1) TEM-12 0.4 (1) Unknown: 2.2 (5) unknown + TEM-1 0.9 (2) 1.3 (3) i62 Table 5. The genotypic characterization of ESBL-producing K. pneumoniae Genotype CTX-M-2, SHV-11 CTX-M-3, SHV-108, TEM-1 CTX-M-14, SHV-1 CTX-M-14, SHV-11 CTX-M-14, SHV-11, TEM-1 CTX-M-15, OXA-1 CTX-M-15, SHV-1 CTX-M-15, SHV-1, OXA-1 CTX-M-15, SHV-1, TEM-1 CTX-M-15, SHV-1, TEM-1, OXA-1 CTX-M-15, SHV-5, TEM-1, OXA-1 CTX-M-15, SHV-11 CTX-M-15, SHV-11, TEM-1 CTX-M-15, SHV-11, TEM-1, OXA-1 CTX-M-15, SHV-12, TEM-1 CTX-M-15, SHV-28, OXA-1 CTX-M-15, SHV-168 CTX-M-27, SHV-11 SHV-2 SHV-2a SHV-2a, OXA-1 SHV-12 SHV-12, TEM-1 SHV-31, TEM-1 Unknown, SHV-1 Unknown, TEM-1 % of ESBL K. pneumoniae (n) 2.1 (1) 2.1 (1) 2.1 (1) 6.3 (3) 2.1 (1) 2.1 (1) 6.3 (3) 10.4 (5) 4.2 (2) 4.2 (2) 2.1 (1) 2.1 (1) 2.1 (1) 10.4 (5) 2.1 (1) 2.1 (1) 2.1 (1) 2.1 (1) 2.1 (1) 6.3 (3) 2.1 (1) 4.2 (2) 8.3 (4) 2.1 (1) 6.3 (3) 2.1 (1) producing E. coli and K. pneumoniae, CTX-M represented the dominant family of enzyme identified (94.4% and 66.7%, respectively), with CTX-M-15 being the dominant variant expressed (70.2% and 75.0%, respectively). Some 73.6% (170/231) of ESBL-producing E. coli and 83.3% (40/48) of ESBL-producing K. pneumoniae in this study produced multiple b-lactamases. The narrow-spectrum b-lactamases TEM-1 and OXA-1 occurred frequently in both ESBL-producing E. coli (37.7% and 50.6%, respectively) and ESBL-producing K. pneumoniae (41.7% and 33.3%, respectively). In addition, 35.4% of ESBL-producing K. pneumoniae produced SHV-1. The most common genotype among ESBL-producing E. coli was CTX-M-15, OXA-1 [36.4% (84/231)], while CTX-M-15, SHV-11, TEM-1, OXA-1 [10.4% (5/48)] was the most common among ESBL-producing K. pneumoniae. Genotypic diversity was greater among ESBL-producing K. pneumoniae, with 26 different genotypes in 48 K. pneumoniae isolates, as compared with 20 different genotypes in 231 E. coli isolates. Of the 115 AmpC-producing E. coli, 65 (56.5%) contained acquired AmpC b-lactamase genes, of which 64 (98.5%) produced CMY-2 and 1 (1.5%) produced FOX-5. The remaining 50 (43.5%) isolates were PCR negative for the acquired AmpC b-lactamase genes detected in this study and were found to contain promoter/attenuator mutations within the chromosomal ampC gene of E. coli. PFGE was carried out in order to assess the genetic relatedness of ESBL- and AmpC-producing strains isolated from CANWARD ESBL/AmpC/KPC 2007 – 11 Canadian hospitals. Overall, ESBL- and AmpC-producing E. coli were generally not related by PFGE; however, in both cases, small clusters of genetically related isolates were identified. One clonal outbreak of AmpC-producing E. coli was identified from an Ontario hospital in 2008. This outbreak consisted of three isolates, all containing a 214/213 GT insertion [GTCGTT to GTCGTGTT] within the promoter region of the chromosomal ampC gene, as previously reported by Simner et al.21 Similarly, one clonal outbreak of ESBL-producing E. coli was also identified from the Ontario region in 2011, again consisting of three isolates, all of which contained a CTX-M-15, TEM-1, OXA-1 genotype. ST131 was identified among 55.8% (129/231) of ESBL-producing E. coli as compared with 28.7% (33/115) of AmpC-producing E. coli (P,0.001). The rate of ST131 among ESBL-producing E. coli showed a steady, significant increase across the study period, from a rate of 49.1% in 2007 to 71.7% in 2011 (2007, 26/53; 2008, 27/55; 2009, 25/47; 2010, 18/30; and 2011, 33/46) (P ¼ 0.020). ESBL-producing K. pneumoniae were also generally not related by PFGE. Analysis did, however, reveal two clusters of interest, again from the Ontario region, suggesting possible intrahospital spread. The first cluster of isolates contained two SHV-12 producers, both isolated from the same Ontario hospital in 2008 and 2009; the second cluster contained four CTX-M-15 producers, all from the same Ontario hospital isolated in 2009. All KPC-producing E. coli (n¼ 2) and K. pneumoniae (n¼ 1) produced KPC-3. The two KPC-producing E. coli isolates coexpressed TEM-1 and were found to be genetically related (80% similarity) by PFGE. Discussion E. coli was the top-ranked organism collected during the CANWARD study, comprising 20.1% of all isolates, while K. pneumoniae ranked fifth overall and third among Gram-negative organisms, comprising 6.1% of all isolates collected. The national rates of ESBL-producing E. coli and K. pneumoniae from 2007 to 2011 were found to be 4.2% and 2.9%, respectively. These rates remain lower that those reported by the SMART (2009 –10) study, where 8.5% and 8.8% of North American E. coli and K. pneumoniae isolates were found to produce an ESBL.22 With respect to Canadian data, the rate of ESBL-producing E. coli is comparable to that published by Peirano et al. 23 in a study of E. coli blood culture isolates from the Calgary Health Region isolated between 2000 and 2010. In a similar study by the same group,24 the rate of ESBL-producing K. pneumoniae was found to be much lower [0.6% (89/15371)] than what is reported here. Nationally, the proportion of E. coli and K. pneumoniae isolates collected that produced an ESBL increased significantly during the study period, and in the case of E. coli, all regions demonstrated significant increases with the exception of Saskatchewan/Manitoba and the Maritimes (Nova Scotia and New Brunswick). Although the proportion of ESBL-producing K. pneumoniae demonstrated variability, at least in part due to the decreased overall number of K. pneumoniae collected in comparison with E. coli, a significant regional increase was observed in Ontario. We speculate that the observed increase in ESBL-producing E. coli was largely driven by the continued success of the JAC O25b:H4 ST131 clone, reflected in the growing proportion of ST131 isolates among our cohort. Similarly, Peirano et al. 23 reported a clear association between ST131 and a significant increase in the rate of ESBL+ E. coli bloodstream infections since 2007 in the Calgary Health Region. In addition, this clone represents the major factor influencing the spread of CTX-M-15 in Canadian hospitals, with 102 of 153 CTX-M-15 producers belonging to ST131. These data are consistent with reports from the USA by Johnson et al.,25 where ST131 comprised 56% of CTX-M-15-producing isolates. Factors driving the observed increase in ESBL-producing K. pneumoniae were less clear, due in part to genotypic diversity and a lack of ST data. A recent report from Canada does, however, indicate the absence of any one dominant ST promoting the spread of ESBL-producing K. pneumoniae, where the major STs ST17, ST20, ST573 and ST575 comprised only 32% of isolates.24 While a large number of ESBL-producing K. pneumoniae (50%) were found to produce CTX-M-15, it is difficult to justify that any one successful plasmid or mobile element is currently influencing this spread, as 12 different genotypes were identified among 24 isolates. Although indicative of a largely polyclonal cohort, this does not rule out the possibility that one or more dominant ST is responsible for the observed trends. For example, in a study by Ko et al.,26 70% of ESBL-producing K. pneumoniae from Korea belonged to ST11, while multiple genotypes were identified within this ST, indicating several acquisition events by this clone. In order to further delineate the molecular basis underlying the spread of ESBL-producing K. pneumoniae in Canadian hospitals, additional investigations are required. Recently, there has been considerable debate regarding whether it is necessary to utilize ESBL detection methods in the case of isolates with elevated MICs to extended-spectrum cephalosporins and the clinical relevance of such testing.27 We feel that it is important to highlight that 1.3%, 36.5% and 53.2% of ESBL-producing E. coli and 14.6%, 29.3% and 57.9% of ESBL-producing K. pneumoniae in this study demonstrated in vitro susceptibility to ceftriaxone, ceftazidime and cefepime, respectively, based on current cephalosporin breakpoints. These data are relevant to the recent CLSI and EUCAST recommendations that lowered cephalosporin breakpoints are sufficient for the detection of resistance genes and clinical decision making with regard to antibiotic selection.13,28 Although the combination of MIC-based screening criteria and phenotypic methods for the detection of ESBL production does not represent a perfect system, the use of such tests in a clinical setting would provide further clarity when administering antimicrobial therapy and is important to the implementation of proper infection control. AmpC-producing E. coli demonstrated a significant national increase, including regional increases in British Columbia/ Alberta and Ontario. With an overall rate of 2.6% among all E. coli collected, AmpC-producing isolates remain a relevant cause of antimicrobial-resistant infections in Canadian hospitals. The molecular basis of AmpC-mediated resistance in this study resulted from approximately equal proportions of isolates harbouring mutations within the chromosomal ampC gene and those producing plasmid-mediated CMY-2, consistent with previous reports.21,29,30 The observed increase in the proportion of AmpC producers among E. coli isolates collected in this study is probably multifactorial, resulting from the clonal spread of i63 Denisuik et al. virulent strains and the dissemination of conjugative plasmids, as previously described by Baudry et al.,29 as well as increased selection pressure for chromosomal ampC hyperproducers. The identification of carbapenemase-producing isolates was minimal in this study and is limited by the low overall prevalence of such organisms in Canadian hospitals combined with the overall number of isolates collected. The first carbapenemase producer in our cohort was received in January 2009, shortly after KPC-producing Enterobacteriaceae first appeared in Canadian hospitals.31 Globally, the prevalence of carbapenemaseproducing E. coli and K. pneumoniae is largely dependent on region. From 2007 to 2009, the rate of carbapenemaseproducing E. coli and K. pneumoniae was estimated to range between 1.8% and 2.4%, based on US, European and Latin American data as reported by the SENTRY study.32 The national prevalence of carbapenemase resistance among clinical Enterobacteriaceae isolates in Canada is estimated by the Canadian Nosocomial Infection Surveillance Program (CNISP) to be significantly lower at 0.1% (59/52078), with only 10 isolates confirmed to produce a carbapenemase enzyme from 2009 to 2010.18 If we consider the years 2009 –11 of this study, corresponding with the emergence of carbapenemase producers in Canadian hospitals, the CNISP data are in agreement with findings reported here [0.1% (3/3294)]. The detection of blaKPC-3 in all carbapenemase producers in this study is consistent with the report by Mataseje et al.,18 where 7 of 10 carbapenemase-producing Enterobacteriaceae isolated from Canadian hospitals produced this variant. In summary, we provide an update on the national prevalence and molecular epidemiology of ESBL-, AmpC- and carbapenemase-producing E. coli and K. pneumoniae isolated from Canadian hospitals from 2007 to 2011. Over this 5 year period, the proportion of ESBL- and AmpC-producing E. coli and K. pneumoniae demonstrated significant national increases, with ESBL-producing E. coli representing the dominant group in Canada. While the number of carbapenemase-producing Enterobacteriaceae is currently low, individual cases began to appear at the beginning of 2009. Furthermore, through increased selection pressure due to the rising incidence of ESBL-producing isolates and the influence of foreign travel, it is highly likely that the rate of carbapenemase producers in Canadian hospitals will continue to increase.33 Funding Funding for CANWARD was provided in part by the University of Manitoba, Health Sciences Centre (Winnipeg, Manitoba, Canada), Abbott Laboratories Ltd, Achaogen Inc., Affinium Pharmaceuticals Inc., Astellas Pharma Canada Inc., AstraZeneca, Bayer Canada, Cerexa Inc./Forest Laboratories Inc., Cubist Pharmaceuticals, Merck Frosst, Pfizer Canada Inc., Sunovion Pharmaceuticals Canada Inc. and The Medicines Company. Transparency declarations D. J. H. and G. G. Z. have received research funding from Abbott Laboratories Ltd, Achaogen Inc., Affinium Pharmaceuticals Inc., Astellas Pharma Canada Inc., AstraZeneca, Bayer Canada, Cerexa Inc./Forest Laboratories Inc., Cubist Pharmaceuticals, Merck Frosst, Pfizer Canada Inc., Sunovion Pharmaceuticals Canada Inc. and The Medicines Company. All other authors: none to declare. This article forms part of a Supplement sponsored by the University of Manitoba and Diagnostic Services of Manitoba, Winnipeg, Canada. References 1 Essack SY. The development of b-lactam antibiotics in response to the evolution of b-lactamases. Pharm Res 2001; 18: 1391– 9. 2 Livermore DM. b-Lactamases—the threat renews. Curr Protein Pept Sci 2009; 10: 397–400. 3 Pitout JDD. Infections with extended-spectrum b-lactamase-producing Enterobacteriaceae: changing epidemiology and drug treatment choices. Drugs 2010; 70: 313– 33. 4 Rogers BA, Sidjabat HE, Paterson DL. 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