and Peripheral Blood Dendritic Cells Lysosomes from Human

Differential Processing of Autoantigens in
Lysosomes from Human Monocyte-Derived
and Peripheral Blood Dendritic Cells
This information is current as
of June 15, 2017.
Timo Burster, Alexander Beck, Eva Tolosa, Petra Schnorrer,
Robert Weissert, Michael Reich, Marianne Kraus, Hubert
Kalbacher, Hans-Ulrich Häring, Ekkehard Weber, Herman
Overkleeft and Christoph Driessen
References
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The Journal of Immunology is published twice each month by
The American Association of Immunologists, Inc.,
1451 Rockville Pike, Suite 650, Rockville, MD 20852
Copyright © 2005 by The American Association of
Immunologists All rights reserved.
Print ISSN: 0022-1767 Online ISSN: 1550-6606.
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J Immunol 2005; 175:5940-5949; ;
doi: 10.4049/jimmunol.175.9.5940
http://www.jimmunol.org/content/175/9/5940
The Journal of Immunology
Differential Processing of Autoantigens in Lysosomes from
Human Monocyte-Derived and Peripheral Blood
Dendritic Cells1
Timo Burster,2*§ Alexander Beck,† Eva Tolosa,‡ Petra Schnorrer,‡ Robert Weissert,‡
Michael Reich,*§ Marianne Kraus,*§ Hubert Kalbacher,§ Hans-Ulrich Häring,†
Ekkehard Weber,¶ Herman Overkleeft,储 and Christoph Driessen3*§
D
endritic cells (DC)4 are a highly specialized APC. They
activate naive T cells and are crucial for initiating an
immune response and maintaining tolerance (1, 2). In
vitro-generated DC, such as DC generated from peripheral blood
monocytes (monocyte-derived DC, MO-DC) or bone marrow precursors, both serve as tools for immunotherapy and a model to
understand the basic cell biology and biochemistry of DC (3, 4).
The CD1c (BDCA-1) Ag is specifically expressed on the major
subset of myeloid DC in the blood (5, 6), which induce a Th1polarized Th response. Days 5–7 MO-DC as well as CD1c-DC
show a phenotype of “immature” or “quiescent” DC, i.e., they
express relatively low levels of MHC class II and costimulatory
molecules on the plasma membrane and are converted into fully
mature, activated DC with high expression of MHC class II and
*Department of Medicine II and †Department of Medicine IV, ‡Hertie Institute for
Clinical Brain Research and §Natural Sciences Research Centre, University of Tübingen, Tübingen, Germany; ¶Institute of Physiological Chemistry, University of
Halle, Halle, Germany; and 储Leiden Institute of Chemistry, University of Leiden,
Leiden, The Netherlands
Received for publication January 18, 2005. Accepted for publication July 18, 2005.
The costs of publication of this article were defrayed in part by the payment of page
charges. This article must therefore be hereby marked advertisement in accordance
with 18 U.S.C. Section 1734 solely to indicate this fact.
1
This work was supported by grants from the Deutsche Forschungsgemeinschaft
(DR378.2-1, DR378.2-3, SFB 685, BU 1822/1-1), the Federal Ministry of Education
and Research (Fö.01KS9602), and the Interdisciplinary Centre of Clinical Research
Tübingen (Interdisziplinäres Zentrum für Klinische Forschung).
2
Current address: Department of Pediatrics and Immunology, Stanford University,
Stanford CA 94305.
3
Address correspondence and reprint requests to Dr. Christoph Driessen, Department
of Hematology, Oncology and Immunology, University of Tübingen, Otfried Müller
Strasse 10, D-72076 Tübingen, Germany. E-mail address: christoph.driessen@
med.uni-tuebingen.de
4
Abbreviations used in this paper: DC, dendritic cell; BLC, B lymphoblastoid cell;
Cat: cathepsin; AEP, asparagine-specific endopeptidase; MBP, myelin basic protein;
MOG, myelin oligodendrocyte glycoprotein; MS, multiple sclerosis; DAP, diphenyl
1-(N-peptidylamino)alkanephosphonate ester; IAA, iodoacetamide.
Copyright © 2005 by The American Association of Immunologists, Inc.
costimulatory molecules by exogenous danger signals like damaged tissues or microbial products (2). Although fully activated
DC induce immunity, immature DC are believed to induce tolerance by killing or paralyzing autoreactive T cells or by induction
of regulatory T cells (7–10).
The way DC handle exogenous Ag is key to their function.
Antigenic material is internalized into the endocytic compartment,
where it undergoes proteolytic processing after exposure to reducing and hydrolyzing enzymes, before the proteolytic products form
a complex with MHC class II molecules and are routed to the cell
surface for the triggering of T cells. Understanding this mechanism
of Ag processing can be useful both for vaccine design and toward
a selective manipulation of Ag presentation during an autoimmune
response. The major endocytic proteases likely to mediate Ag
breakdown in APC are the cathepsins (Cat) S, L, V, D, and B,
along with the asparagine-specific endopeptidase (AEP) (11). Different types of APC (like DC, B lymphoblastoid cells (BLC), thymic epithelial cells, monocytes) express individual patterns of active endocytic proteases and little is known about the rules that
govern proteolysis of Ag in human DC. Studies with BLC have
chiefly substantiated the model that one protease or a limited set of
proteolytic enzymes dominate Ag processing by initiating the proteolytic cascade (“unlocking protease(s)”), controlling Ag breakdown, the generation or destruction of a given epitope, and thus the
triggering of a T cell response (12–14). Depending on the substrate
specificity of this unlocking protease and the relationship of its
dominant cleavage site to the major immunogenic epitope of the
antigenic protein, the unlocking protease can either increase T cell
activation by facilitating the processing of the intact Ag or decrease the T cell response by direct destruction of the immunodominant epitope. In BLC, processing of MBP, an autoantigen
implicated in the pathogenesis of multiple sclerosis (MS) (15), is
initiated by AEP (16), which consequently controls the MBP-specific T cell response (13). AEP, however, is absent from primary
0022-1767/05/$02.00
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Dendritic cells (DC) initiate immunity and maintain tolerance. Although in vitro-generated DC, usually derived from peripheral
blood monocytes (MO-DC), serve as prototype DC to analyze the biology and biochemistry of DC, phenotypically distinct primary
types of DC, including CD1c-DC, are present in peripheral blood (PB-DC). The composition of lysosomal proteases in PB-DC and
the way their MHC class II-associated Ag-processing machinery handles a clinically relevant Ag are unknown. We show that
CD1c-DC lack significant amounts of active cathepsins (Cat) S, L, and B as well as the asparagine-specific endopeptidase, the
major enzymes believed to mediate MHC class II-associated Ag processing. However, at a functional level, lysosomal extracts from
CD1c-DC processed the multiple sclerosis-associated autoantigens myelin basic protein and myelin oligodendrocyte glycoprotein
in vitro more effectively than MO-DC. Although processing was dominated by CatS, CatD, and asparagine-specific endopeptidase
in MO-DC, it was dominated by CatG in CD1c-DC. Thus, human MO-DC and PB-DC significantly differ with respect to their
repertoire of active endocytic proteases, so that both proteolytic machineries process a given autoantigen via different proteolytic
pathways The Journal of Immunology, 2005, 175: 5940 –5949.
The Journal of Immunology
human B lymphocytes, where CatG controls MBP turnover, resulting in an entirely different proteolytic pattern (17). Potential
processing pathways for myelin oligodendrocyte glycoprotein
(MOG), another autoantigen implicated in the pathogenesis of MS,
have not yet been established (18).
In DC generated in vitro, AEP as well as CatS, L, B, H, C, Z,
and G are present (3, 19, 20), and exogenous Ag is selectively
routed to an endocytic compartment enriched with CatS in vivo
(21). However, it is unknown which of these proteases dominates
turnover of an intact protein in the endocytic compartment of DC
and to what extent expression, activity, and the pathway of MBP
or MOG degradation differ between DC generated in vitro and
primary peripheral blood DC. We have here compared human
MO-DC and primary CD1c-DC with respect to the expression and
activity of endocytic proteases and have followed the destruction
of MBP and MOG by the lysosomal protease pool isolated from
both types of cells.
Determination of Cat activity
Hydrolysis of Suc-AAPF-AMC (Bachem) that serves as an established
substrate to determine CatG activity (26) was quantified fluorometrically
exactly as described elsewhere (17). The fraction of the emitted fluorescence that could be inhibited by addition of chymostatin was considered
CatG activity. Combined CatB, CatL, and CatS activities were determined
using the fluorogenic substrate Z-FR-AMC (0.1 M citrate (pH 5.0), 4 mM
DTT, and 4 mM EDTA, as published in Ref. 25).
Affinity labeling of active proteases
For labeling of active cysteine proteases, cell lysates (5 ␮g) were incubated
with reaction buffer (50 mM citrate/phosphate (pH 5.0), 1 mM EDTA, and
50 mM DTT) in the presence of DCG-0N, a derivative of DCG-04 that
shows identical labeling characteristics (27, 28), for 1 h at room temperature. Reactions were terminated by addition of SDS reducing sample
buffer and immediate boiling. Samples were resolved by 12.5% SDSPAGE gel, then blotted on a polyvinylidene difluoride membrane and visualized using streptavidin-HRP and the ECL detection kit (29). Active
CatG was visualized using the serine protease-restricted biotinylated affinity probe diphenyl 1-(N-peptidylamino)alkanephosphonate ester (DAP)
(30) under identical conditions (probe provided by M. Bogyo, Stanford
University, Stanford, CA).
Generation and characterization of DC
Abs and Western blot
Human PBMC were isolated from buffy coats of donor blood by density
gradient centrifugation. Subpopulations of CD1c-DC and CD14-positive
monocytes were positively selected using the MACS technique (Miltenyi
Biotec) according to the manufacturer’s protocol with CD1c and CD14
Abs, respectively. MO-DC were generated from CD14-selected monocytes
by incubation with GM-CSF and IL-4 for 6 days as described
previously (19).
Anti-Cat antisera were generated against recombinant CatS and affinitypurified human CatL, B, H, and D. The anti-AEP Ab was a gift from C.
Watts (University of Dundee, U.K.), and anti-cystatin antisera were purchased from Upstate Biotechnology. A polyclonal goat anti-human CatG
antiserum was obtained commercially (Santa Cruz Biotechnology). Cells
lysed in Nonidet P-40/pH 7.0 lysis buffer (50 mM sodium acetate, 5 mM
MgCl2, and 0.5% Nonidet P-40) were adjusted for equal total protein,
resolved by SDS-PAGE, and blotted using published conditions (17).
Expression and purification of MBP and MOG
RT-PCR for lysosomal proteases
Human recombinant MBP (18.5 kDa; Swiss-Prot: P02686-5, lacking methionine in pos. 1) was produced in Escherichia coli and purified by ion
exchange chromatography as described elsewhere (16). The purified protein was controlled by MALDI-mass spectrometry for both purity (⬎98%)
and correct mass.
Human recombinant MOG was expressed as previously described (22).
Briefly, the DNA sequence encoding the extracellular domain of mature
human MOG (including four N-terminal amino acids of the transmembrane
domain) was PCR amplified and subcloned into pQ60 (Qiagen). The Histagged fusion protein (recombinant human MOG) was expressed in E. coli
and purified under denaturing conditions by metal chelate affinity chromatography on Ni-NTA agarose columns (Qiagen) according to the manufacturer’s guidelines. MOG was solubilized and reduced using 3-bromopropyltrimethyl-ammonium bromide, a method that had been
demonstrated not to influence the pattern of proteolytic degradation of a
given protein (23, 24).
Cells were lysed in TRIzol (Invitrogen Life Technologies), and the RNA
was extracted following the manufacturer’s protocol. First-strand cDNA
was prepared by reverse transcription using the Superscript RNase H- Reverse Transcriptase (Invitrogen Life Technologies) and random hexamers.
For real-time PCR, gene expression was measured in the ABI Prism 7000
Sequence Detection System (Applied Biosystems). Primer pairs were selected with the Husar Genius software (DKFZ) to span exon-intron junctions and to result in amplicons ⬍150 bp. Amplification of specimens and
serial dilutions of the amplicon standards was conducted with 2⫻ SYBR
Green Master Mix (Applied Biosystems). Standard curves were generated
for each gene with amplification efficiency ⬎90%. Relative quantification
of gene expression was determined mathematically as suggested by the
manufacturers. Results are normalized with respect to the internal control
18S rRNA and are expressed relative to the levels found in one of the
samples. The following oligonucleotide primers (MWG) were used: 18S
rRNA forward primer, 5⬘- CGGCTACCACATCCAAGGAA-3⬘ and reverse primer, 5⬘-GCTGGAATTACCGCGGCT-3⬘; human AEP GAAGC
CTGTGAGTCTGGGTC, CAGTCCCCCAGGTACGTG; CatB, CTGTG
TAT TCGGACTTCCTGC, CCAGGAGTTGGCAACCAG; CatD, AACT
GCTGGACATCGCTTG, AGGTACCCGGAGAGGCTG; CatF, ATAT
GAGTCAAAGGAAGAAGCCC, GATCAC TGAACTTGGTGACTCC;
CatG, CCCCTACATGGCGTATCTTCA, TTGCTTCCC CAGCAATGAG;
CatH, ACTGGCTGTTGGGTATGGAG, AGGCCACACATGTTCTTTCC;
CatL, ACCAAGTGGAAGGCGATG, TTCCCTTCCCTGTATTCCTG;
CatS, ACTCA GAATGTGAATCATGGTG, TTCTTGCCATC CGAATA
TATCC; and CatZ, GGGAGGGAGA AGATGATGG, ATGTGGTGTC
CTGGTATTCG.
Generation of lysosomal extracts and in vitro processing
Lysosomal extracts were generated by differential centrifugation and
characterized as published before (17, 25). In brief, crude endocytic
compartments were enriched by differential centrifugation from postnuclear supernatants, followed by a short exposure of the membrane
pellet to water, which preferentially disrupts the membrane integrity of
lysosomes due to their low osmotic resistance. This process yielded
highly enriched lysosomal extracts as judged by the distribution of
CatD, transferrin receptor, and N-acetyl-glucosaminidase. For in vitro
processing, substrate solution (0.04 ␮g/␮l MBP or MOG, 0.1 M citrate
(pH 5.0), and 2.5 mM DTT) was incubated with lysosomal fractions at
37°C (0.5 ␮g of total protein).
Identification of processing products from MBP and MOG
Processed MBP and MOG were analyzed by liquid chromatography-electrospray-mass spectrometry as published previously (17). Expected masses
were calculated as average mass with statistical isotope distribution. The
mass accuracy of the detected molecular ions was in the range of ⫾200
ppm. Where proteolytic products were not analyzed by mass spectrometry
(see Fig. 3), they were separated by microbore HPLC as published elsewhere (16). CatG inhibitor I was purchased from Calbiochem and used at
100 nM and CatG from human leukocytes was purchased from
Sigma-Aldrich.
Results
Endocytic proteases from CD1c-DC result in a characteristic
processing pattern of MBP in vitro
Human peripheral blood DC and CD14-positive human peripheral
blood monocytes were directly purified from peripheral blood by
the MACS technique using CD1c- or CD14-specific Abs coupled
to magnetic beads. MO-DC were generated from MACS-selected
CD14⫹ monocytes in vitro using GM-CSF and IL-4 for 6 days.
This yielded a ⬎80% pure population of MO-DC (MHC II⫹,
CD1a⫹, CD14⫺, and CD 22⫺) and ⬎90% pure populations of
CD1c-DC (MHC II⫹, CD1c ⫹, CD22⫺; Fig. 1).
Downloaded from http://www.jimmunol.org/ by guest on June 15, 2017
Materials and Methods
5941
5942
FIGURE 1. DC phenotype. The phenotype of monocyte-derived DC
and peripheral blood-derived CD1c-DC, as analyzed by FACS.
proteolytic intermediates was observed after incubation of MBP
with lysosomal proteases from CD1c-DC: proteolytic breakdown
was dominated by two chymotrypsin-like cleavages at 90FK91
and 114FS115 in addition to the CatD-sensitive 44FF45-site. Interestingly, 90FK91 is located in the core region of the major immunogenic MBP epitope MBP85–99. Of note, proteolytic intermediates indicative of AEP- or CatS-mediated processing were not
observed. A significant portion of MBP processing products from
CD1c-DC, but not from MO-DC, differed at the N terminus while
showing identical C termini, suggesting relatively high aminopeptidase activity in CD1c-DC lysosomes. Taken together, these data
demonstrate that lysosomal extracts from MO-DC and CD1c-DC
yield different processing patterns of MBP. They further suggest
that the major proteases implicated in lysosomal Ag processing,
CatS and AEP, are functionally dominant proteolytic enzymes in
lysosomes from MO-DC, while they appeared to be of little, if any,
functional relevance for MBP breakdown in CD1c-DC-derived lysosomes. Strikingly, two of three major MBP processing sites generated with CD1c-DC-derived lysosomes (90FK91 and 114FS115)
were identical to cleavage sites reported after treatment of MBP
with isolated CatG (17).
To further corroborate the different proteolytic processing
pathways between lysosomes from either type of DC, recombinant human MOG carrying a C-terminal His-tag was digested
with lysosomal extracts and analyzed by mass spectrometry in
a similar fashion (Fig. 2c and Table II). Incubation of MOG
with lysosomes derived from MO-DC for 5 h resulted in poor
substrate turnover with an endoproteolytic cleavage site at
100FF101. LPS treatment of MO-DC led to more efficient proteolytic turnover along a similar proteolytic pathway. The MOG
positions 15AL16, 73LK74, and 109AA110 were identified as
additional cleavage sites. When CD1c-DC were used as a
source of lysosomal enzymes, efficient degradation of MOG
was observed after 1 h, and the positions MOG 47VV48 and
FIGURE 2. Processing of MBP and MOG by DC-derived lysosomal proteases. a, Intact MBP was incubated with lysosomal extracts from resting or
LPS-stimulated (upper panel) MO-DC or CD1c-DC (lower panel) normalized for total protein. Proteolytic fragments obtained are resolved by HPLC and
visualized by absorption at 280 nm. b, Proteolytic MBP fragments are displayed along with full-length MBP and the location of the two major immunogenic
epitopes (MBP85–99 and MBP116 –123). Major cleavage sites are marked by arrows and the respective flanking amino acids are indicated. c, Proteolytic
fragments similarly obtained after digesting MOG with either type of lysosomal fractions or with purified CatG (1 ␮g/ml) are displayed alongside with the
full-length MOG product and the respective immunodominant T cell epitope (MOG99 –107).
Downloaded from http://www.jimmunol.org/ by guest on June 15, 2017
To compare the function of the proteolytic machineries between
both types of DC (MO-DC generated in vitro vs primary CD1c-DC
from peripheral blood), we generated lysosomal extracts from both
cell types (17, 25). Equal amounts of total lysosomal protein derived from MO-DC and CD1c-DC were incubated with recombinant MBP in vitro at pH 5, followed by analysis of the respective
proteolytic MBP intermediates by HPLC and mass spectrometry
(Fig. 2, a and b). Lysosomal proteases derived from CD1c-DC
were more effective in degrading intact MBP than the proteolytic
apparatus in MO-DC. Although intact MBP was no longer detectable (elution time, 79 min) after a 4-h incubation with CD1c-DCderived lysosomal fractions, it was still present in significant
amounts when equivalent amounts of MO-DC-derived lysosomal
extracts were used. Turnover of MBP with MO-DC-derived lysosomal proteases yielded major proteolytic cleavage sites at the
CatD-sensitive positions 44FF45 and 89FF90 (Fig. 2, a and b and
Table I) and at the AEP-sensitive site 92NI93. LPS treatment did
not significantly change this pattern, although fragments indicative
of CatS-mediated cleavage at 88HF89 and 110SL111 were now
also detectable, in agreement with the increase in active CatS observed under these conditions (19). An entirely different pattern of
Ag PROCESSING BY BLOOD DC
The Journal of Immunology
5943
Table I. MBP fragments after processing with DC-derived lysosomes, as assessed by mass spectrometrya
Retention Time
56.1–56.9
68.1– 69.4
74.1–75.2
75.0 –76.1
77.8 –78.3
78.4 –79.9
Retention Time
77.8 –78.3
78.4 –79.9
Retention Time
54.5–56.1
59.1– 60.6
68.1– 68.8
68.9 – 69.3
69.9 –70.4
71.3–72.6
74.6 –75.3
77.6 –78.6
a
⌬ Da
MBP Fragment
5,268.7
4,962.6
9,822.8
8,267.3
8,656.7
10,212.3
13,517.0
18,460.5
0.8
0.0
0.2
0.4
0.4
2.0
0.3
1.4
45–92
1– 44
1– 89
93–170
90 –170
1–92
45–170
1–170
[M ⫹ H]⫹
MO-DC ⫹ LPS
Expected Mass
[M ⫹ H]⫹
⌬ Da
MBP Fragment
5,267.9
3,378.6
4,962.6
9,674.3
9,821.7
8,267.7
8,656.3
10,210.3
13,517.3
18,459.1
5,268.7
3,378.7
4,962.6
9,675.6
9,822.8
8,267.3
8,656.7
10,212.3
13,517.0
18,460.5
0.8
0.1
0.0
1.3
1.1
0.4
0.4
2.0
0.3
1.4
45–92
111–141
1– 44
1– 88
1– 89
93–170
90 –170
1–92
45–170
1–170
[M ⫹ H]⫹
CD1c-DC
Expected Mass
[M ⫹ H]⫹
⌬ Da
MBP Fragment
2,595.0
5,026.2
4,962.7
5,702.4
3,065.4
3,237.1
2,993.8
5,933.5
3,350.7
4,934.3
8,358.9
2,595.0
5,026.5
4,962.6
5,702.4
3,065.4
3,237.6
2,993.8
5,933.6
3,350.8
4,934.4
8,358.2
0.0
0.3
0.1
0.0
0.0
0.5
0.0
0.1
0.1
0.1
0.7
91–114
45–90
1– 44
39 –90
18 – 44
16 – 44
19 – 44
115–170
15– 44
115–161
15–90
[M ⫹ H]
5,267.9
4,962.6
9,822.6
8,267.7
8,656.3
10,210.3
13,517.3
18,459.1
See footnote to Table II.
91FS92 were the sites of initial proteolytic attack. The latter
corresponded with processing of MBP at 114FS115 in lysosomes from the same type of DC. Further processing of MOG
for 5 h revealed 16LV17, 47VV48, 73LK74, 91FS92, and
101FR102 as major proteolytic sites, in contrast to lysosomes
from MO-DC or MO-DC stimulated with LPS. Because the
dominant 91FS92 cleavage suggested CatG-mediated processing of MOG, we tested purified CatG with respect to MOG
processing in vitro. Strikingly, purified CatG reproduced the
16LV17, 73LK74, 91FS92, and 101FR102 processing sites observed with CD1c-DC-derived lysosomes, suggesting a major
functional role of CatG in lysosomes from CD1c-DC.
Different classes of proteases initiate MBP processing in
MO-DC and CD1c-DC
To functionally confirm that the initial proteolytic step in processing of intact MBP was indeed performed by different types
of unlocking proteases in MO-DC vs CD1c-DC, MBP was digested in the presence or absence of protease inhibitors. Iodoacetamide (IAA) inhibits cysteine proteases including CatS, L, B,
C, Z, H, as well as AEP, pepstatin A blocks aspartate proteases
like CatD, whereas PMSF inhibits serine proteases like CatG.
Resolution of the emerging MBP fragments after 4 h of digest
with MO-DC-derived lysosomal extracts in the absence of protease inhibitors revealed intact MBP eluting at 24 min (Fig. 3),
along with a number of processing intermediates at shorter retention times.
Addition of IAA and pepstatin A virtually blocked MBP turnover, entirely consistent with the dominant role of AEP and CatD
for MBP processing in MO-DC-derived lysosomes observed before. A completely different picture emerged with lysosomes from
CD1c-DC: Addition of IAA and pepstatin influenced neither the
kinetics of MBP turnover nor the fragmentation pattern observed,
excluding that papain-like Cat, CatD, or AEP played a dominant
role in controlling the initial steps of MBP destruction by lysosomal proteases from CD1c-DC. Inhibition of serine proteases by
PMSF, by contrast, markedly delayed the turnover of intact MBP
and resulted in a different pattern of proteolytic fragments. Of note,
addition of a selective CatG inhibitor preserved the integrity of the
major fraction of MBP. This indicated that a serine protease activity, likely CatG, was the dominant and rate-limiting proteolytic
activity for turnover of MBP with CD1c-DC-derived lysosomes, in
contrast to MO-DC, where this was controlled by cysteine and
aspartate proteases. Thus, different processing pathways are initiated when MBP is degraded by lysosomes from either MO-DC or
CD1c-DC.
Downloaded from http://www.jimmunol.org/ by guest on June 15, 2017
55.0 –56.5
63.0 – 63.7
68.1– 69.4
69.0 –70.7
74.1–75.2
75.0 –76.1
MO-DC
Expected Mass
[M ⫹ H]⫹
⫹
5944
Ag PROCESSING BY BLOOD DC
Table II. MOG fragments after processing with DC-derived lysosomes, as assessed by mass spectrometrya
Retention Time
70.4 –72.4
Retention Time
41.5– 42.3
43.2– 44.7
50.5–51.5
52.9 –53.9
54.3–55.7
64.3– 67.0
Retention Time
Retention Time
47.6 – 48.9
49.2–50.4
50.2–51.6
54.3–55.1
55.6 –56.6
59.9 – 61.1
63.0 – 63.7
67.5– 68.6
68.6 –70.3
70.7–71.7
⌬ Da
MOG Fragment
4285.61
0.12
101–135
MO-DC ⫹ LPS,
5-h Expected
Mass [M ⫹ H]⫹
⌬ Da
MOG Fragment
1347.80
1418.84
1925.13
2153.84
1725.75
2576.20
4285.61
0.08
0.07
0.10
0.19
0.02
0.26
0.51
4 –14
4 –15
74 –90
92–109
101–114
115–135
101–135
CD1c-DC, 1-h
Expected Mass
[M ⫹ H]⫹
⌬ Da
MOG Fragment
5085.73
5229.60
0.08
1.02
48 –91
92–135
CD1c-DC, 5-h
Expected Mass
[M ⫹ H]⫹
⌬ Da
MOG Fragment
2930.44
1578.68
1769.03
3031.31
1788.04
2576.20
2072.20
2287.27
4782.37
4138.44
4887.47
0.0
0.12
0.15
0.31
0.15
0.31
0.13
0.10
0.68
0.36
0.75
49 –73
102–114
74 – 89
48 –73
1–16
115–135
74 –91
1–21
48 – 89
102–135
50 –91
[M ⫹ H]
4285.73
⫹
[M ⫹ H]
1347.72
1418.91
1925.03
2154.03
1725.77
2575.94
4285.10
⫹
[M ⫹ H]
5085.81
5228.58
⫹
[M ⫹ H]
2930.44
1578.80
1769.18
3031.62
1788.19
2576.51
2072.33
2287.37
4781.69
4138.08
4886.72
a
Tables I and II: proteolytic processing of MBP and MOG by DC-derived lysosomes in vitro.
Equal amounts of protein from lysosomal extracts generated from MO-DC (resting and stimulated with LPS for 24 h) and
CD1c-DC, respectively, were incubated with recombinant MBP (Table I) or MOG (Table II) in vitro. The emerging proteolytic
MBP products were resolved and identified by liquid chromatography-ES-mass spectrometry as described. HPLC retention times
of the respective fragments, their actual and theoretical masses ([M ⫹ H]⫹, expected mass [M ⫹ H]⫹, respectively), the
calculated difference between both (⌬ Da), and the respective proteolytic fragment deferred from this are presented.
Differential expression of lysosomal proteases in different types
of human DC
To assess the panel of proteases and endogenous protease inhibitors of the MHC class II Ag-processing compartment in both types
of DC, cell lysates were prepared from each type of DC and equal
amounts of protein were probed for CatD, B, H, L, S, C, and Z and
AEP along with cystatin C and B by immunoblot (Fig. 4). Where
indicated, maturation/activation was induced by addition of LPS,
TNF-␣, or IFN-␥ for the last 24 h of culture. Considerable differences were observed between resting MO-DC and primary CD1cDC: in MO-DC, CatB was abundantly present as the mature 25kDa polypeptide, which was absent from CD1c-DC. In CD1c-DC,
the 30-kDa CatB polypeptide was present in larger amounts as
compared with the 25-kDa isoform, also in contrast to MO-DC.
Treatment with either LPS, TNF-␣, or IFN-␥ did not affect the
expression or maturation pattern on CatB in MO-DC. CatC, CatZ,
and CatL that were expressed by MO-DC in significant amounts
were absent or at the limit of detection in CD1c-DC. The expression of AEP also differed at least by one order of magnitude between MO-DC and CD1c-DC. In agreement with published data,
induction of maturation by LPS or TNF-␣ led to increased conversion of pro-AEP into its mature form (3) in MO-DC. CatH was
also markedly reduced in CD1c-DC, as compared with MO-DC.
The protease inhibitor cystatin B showed a high expression in
CD1c-DC and considerably lower quantities in MO-DC. CatS,
CatD, and cystatin C were present in similar amounts at the
polypeptide level in all cell types and conditions tested.
Expression levels of mRNA for endocytic proteases in DC
We next compared the transcriptional activity for endocytic proteases and cystatins between MO-DC and CD1c-DC using quantitative RT-PCR (Fig. 5). Primary monocytes and PBMC served as
controls, and the amounts of the respective mRNA detected were
expressed relative to its quantities in PBMC. For CatB, CatZ,
CatH, and AEP, the quantitative differences in mRNA expression
between MO-DC and CD1c-DC1 reflected the differences observed in the protein level, i.e., CD1c-DC1 contained lower levels
of mRNA for these proteases. CatL, by contrast, showed significant transcriptional activity in CD1c-DC, although the respective
protein was not detected. CD14 monocytes contained sizable
amounts of CatL mRNA, as expected. Only moderate differences
in the amounts of mRNA between MO-DC and CD1c-DC were
observed for CatS and CatD, also roughly in agreement with the
results obtained by immunoblot. Cystatins B and C transcribed at
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67.3– 68.6
68.6 –70.5
MO-DC, 5-h
Expected Mass
[M ⫹ H]⫹
⫹
The Journal of Immunology
higher levels in MO-DC, in contrast to the data from the protein
level. Interestingly, LPS stimulation of MO-DC selectively induced robust transcription of cystatin F. Thus, the fundamental
differences between MO-DC and primary human peripheral blood
CD1c-DC in the amounts of endocytic proteases were roughly reflected by similar differences in the transcriptional activities of the
respective genes.
Peripheral blood DC lack significant activity of the major
cysteine Cat
To assess the major cysteine Cat involved in MHC class II-associated Ag processing on a functional level, we measured the turnover of the fluorogenic substrate Z-FR-AMC, which detects the
combined activity of CatS, CatL, and CatB in cell lysates (25).
Substrate turnover per microgram of total protein was ⬃20-fold
higher in MO-derived DC compared with human peripheral blood
DC (Fig. 6a), where it was close to the detection limit. Activitybased affinity labeling using the active site-directed chemical probe
DCG-0N was used to differentiate between the individual Cat in
this respect. Because this biotinylated probe binds irreversibly to
the active site of papain-like cysteine proteases, it allowed us to
visualize active CatS, CatL, CatB, CatC, and CatZ polypeptides in
an activity-dependent, semiquantitative fashion after SDS-PAGE
and HRP blot. Detection of ␤-actin by immunoblot was performed
to control for similar amounts of total cellular protein (Fig. 6b). In
MO-DC, the active polypeptides visualized with the probe were
CatZ (37 kDa), CatB (33 kDa), CatS (28 kDa), and CatL/CatC
(both migrating as a single band at 25 kDa) as expected (19, 21, 29,
31). Treatment with LPS, TNF-␣, or IFN-␥ increased the amounts
of active CatS detected in MO-DC, but did not significantly change
the gross pattern of active polypeptides as reported earlier (19, 20).
In contrast to MO-DC, only trace amounts of active CatS were
FIGURE 4. Protease expression in DC assessed by Western blot. Expression of Cat, the asparagine-specific endoprotease as well as its precursor (AEP and proAEP, respectively) and cystatins B and C (Cyst) were
assessed in whole lysates from MO-DC, CD1c-DC, and isolated monocytes (CD14). MO-DC were either lysed without activation or were challenged by TNF-␣, IFN-␥ (100 U/ml each), or LPS (1 ␮g/ml) for the last
24 h of culture. Equal amounts of total cellular protein were analyzed by
SDS-PAGE and Western blot.
detectable in CD1c-DC. Of note, this did not reflect the situation
observed on the polypeptide or mRNA level, where the amounts of
CatS were in the same order of magnitude. In agreement with our
results from the protein and mRNA levels, active CatB and CatZ
were also strongly reduced in peripheral blood DC, as compared
with MO-DC generated in vitro. In addition, we failed to detect
CatL and/or CatC in CD1c-DC using the affinity-labeling technique, in contrast to MO-DC, where the respective signal was
strongly present, also in agreement with our results from the protein level. Taken together, these data indicated that the major endoproteases implicated in Ag processing in the MHC class II compartment (AEP, CatS, CatL) were lacking significant activity in
peripheral blood-derived primary DC, in contrast to MO-DC. This
suggested that primary human peripheral blood-derived DC might
contain as yet unidentified proteolytic enzymes that dominate proteolytic breakdown, resulting in an alternative pathway of Ag
processing.
CD1c-DC contain dominant CatG activity
Because CatG degraded intact MBP at 90FK91 and 114FS115 in
primary human B cells (17) and also reproduced the major MOG
cleavage sites, we assumed that CatG was the dominant proteolytic
enzyme in CD1c-DC-derived lysosomes. We therefore measured
turnover of the fluorogenic substrate Suc-AAPF-AMC by equal
amounts of protein from cell lysates. This substrate is hydrolyzed
by chymotrypsin-like endoprotease activity, including CatG, and
therefore represents an established substrate to measure CatG activity (26). As expected, robust substrate turnover was observed
with purified CatG and cell lysates from monocytes, while BLCderived lysates served as a negative control (17) (Fig. 7a). Little
substrate turnover was observed with lysates from MO-DC, while
CD1c-DC contained considerable CatG-like activity. To directly
assess the respective cell types with regard to active CatG, the
affinity-labeling type of experiments with the CatG-reactive affinity probe DAP (30) were performed (Fig. 7b). A strong positive
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FIGURE 3. Effect of protease inhibitors on MBP processing by DC.
Equal amounts of protein from lysosomal extracts generated from MO-DC
or CD1c-DC were incubated with MBP for 4 h, either in the absence of
protease inhibitors or in the presence of IAA (30 mM), Pepstatin A (Pep,
1 ␮M), PMSF (30 mM), or CatG inhibitor (100 nM), respectively. Proteolytic fragments were resolved by HPLC.
5945
5946
Ag PROCESSING BY BLOOD DC
FIGURE 5. mRNA expression of proteases in DC.
The relative amounts of RNA for the Cat S, L, H, Z, B,
and D along with AEP and the cystatins B, C, and F
were analyzed by quantitative RT-PCR and compared
between CD1c-DC (CD1c), PBMC, monocytes
(CD14), MO-DC, and MO-DC exposed to LPS for 24 h.
FIGURE 6. Cat activity in DC. a, The combined activity of the Cat
CatB, CatL, and CatS was compared between MO-DC, MO-DC stimulated
with LPS, TNF-␣, or IFN-␥ and CD1c-DC, respectively, by measuring the
turnover of the fluorogenic substrate Z-FR-AMC in cell lysates normalized
for total protein. Results are expressed in arbitrary units, mean values of
triplicate samples are presented. b, Cell lysates from MO-DC, MO-DC
stimulated with LPS, TNF-␣, or IFN-␥, and CD1c-DC and monocytes
(CD14) were normalized for total protein content, labeled with the activitybased biotinylated probe DCG-0N, and resolved by SDS-PAGE, followed
by semiquantitative visualization of the active papain-like cysteine proteases by streptavidin-HRP blot. A blot against ␤-actin served as control
for comparable amounts of total protein analyzed.
tional activity of CatG was higher in MO-DC and CD14 monocytes than in CD1c-DC (Fig. 7, c and d).
Discussion
MO-DC generated in vitro serve as a model type of DC to unravel
the complex interactions among DC maturation, MHC class II peptide loading, and endocytic transport (3, 33, 34). The emerging
picture suggests that endocytic protease activity is regulated by
differential activity of the lysosomal ATPase during DC maturation (3). By analyzing lysosomal MBP processing at pH 5.0 in
vitro, we have here mimicked the conditions present in the lysosomal compartment of DC in the activated state in vivo.
The MHC class II-associated proteolytic machinery is characterized by a hierarchical proteolytic cascade, where the initial step
controls the efficiency of Ag processing, peptide presentation, and
T cell activation (14). Different types of APC as well as primary
cells and immortalized cell lines contain distinct activity patterns
of endocytic proteases (11, 17, 31, 35–37) which might result in
different processing pathways for a given Ag and hence in different
selections of peptides presented. We here demonstrate that the expression of proteolytic enzymes differs significantly between
MO-DC and CD1c-DC. As expected, mature polypeptides for
CatS, B, L, D, H, and Z as well as AEP were detected in MO-DC
(19 –21, 29, 31), and proAEP was converted into its fully mature
form upon DC maturation (3). However, CD1c-DC lacked mature
CatL, CatB, CatH, CatC, and CatZ, while containing roughly comparable amounts of mature CatS and CatD as well as cystatin C.
When assessed on the activity level, MO-DC contained robust
amounts of CatB, S, L, C, and Z, while these signals were reduced
by at least one order of magnitude in CD1c-DC isolated from
peripheral blood. Especially the poor activity signal for CatS was
surprising, since peripheral blood DC and MO-DC had shown similar CatS expression on the protein level. This suggests that CatS
is tightly controlled at the activity level, e.g., by endogenous inhibitors such as cystatins. Indeed, we found increased expression
of the pan-papain protease inhibitor cystatin B (38) in CD1c-DC.
The relatively high number of N-terminally truncated MBP-processing intermediates detected in lysosomes from CD1c-DC which
might imply a prominent aminopeptidase activity was not observed to a similar degree when MOG processing was analyzed,
suggesting that this finding was not a general phenomenon of lysosomal proteolysis in this cell type. Quantitative analysis of the
mRNA expression of endocytic cysteine proteases was roughly
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activity signal comigrating with purified CatG was obtained from
granulocytes as expected. Active CatG was present in CD1c-DC,
but not detectable in MO-DC or LPS-stimulated MO-DC, in agreement with what had been observed for hydrolysis of the fluorogenic substrate Suc-AAPF-AMC.
The relationship of CatG activity to the amounts of CatG protein
and mRNA present in the different types of cells was assessed by
Western blot. CD1c-DC contained only relatively low amounts of
mature CatG polypeptide compared with MO-DC. Activation of
MO-DC with LPS, IFN-␥, or TNF-␣ led to different degrees
of down-modulation of CatG, in agreement with recently published data from a monocyte cell line (32). Similarly, the transcrip-
The Journal of Immunology
5947
consistent with the data from the protein level, indicating that transcriptional control is also a major regulator for Cat activity in DC.
In vitro generation of MO-DC in the presence of IL-4 and GMCSF might, to some extent, explain the differences in the amount
of cysteine Cat observed between MO-DC and CD1c-DC, because
the proteolytic contents in CD14 control cells closely matched
those in primary CD1c-DC. Also, CatG activity has been demonstrated to decrease during DC differentiation in IL-4 and GM-CSF
(39). Irrespective of the underlying mechanism that modulates protease activity, MO-DC generated in vitro by this method are frequently being used for immunotherapy approaches and also serve
as a model type of DC to assess ways of modifying Ag presentation by applying protease inhibitors. For both types of application,
possible differences in the proteolytic machinery between DC generated ex vivo and primary human DC are implicated by our study.
In previous work, we have characterized the turnover of MBP
by isolated Cat as well as in lysosomal extracts from B cells (16,
17). Using the same experimental system, we here follow the turnover of MBP in lysosomes derived from human DC, including
primary peripheral blood-derived DC. As such, this analysis not
only allows us to compare MBP processing in vitro between different types of human DC, but in addition between lysosomal extracts from different types of human, freshly isolated peripheral
blood APC (CD1c-DC and B lymphocytes). Consistent with the
analysis on the protein and activity levels, AEP, CatS, and CatD
dominated MBP turnover in MO-DC-derived lysosomes, cleaving
at the predicted sites. The cleavage pattern largely resembled that
observed with human BLC, where also AEP dominated turnover of
the autoantigen and thus controlled immunity by selective destruction of its dominant epitope (13, 16). CD1c-DC, however, contained significantly less CatS activity and AEP was virtually absent
from this cell type, while only CatD reached amounts comparable
to MO-DC. The molecular pattern of proteolytic degradation of
MBP by CD1c-DC-derived lysosomes was entirely consistent with
these observations: CatD-mediated cleavage was still observed,
whereas cleavage products indicative of CatS or AEP were absent.
CD1c-DC-derived lysosomal extracts resulted in a significantly
more efficient MBP breakdown than MO-DC-derived lysosomes
and showed the same proteolytic pattern (cleavage at 90FK91 and
114FS115) as primary human B lymphocytes. In human B cells,
which also lack AEP activity, this cleavage is dominated by CatG
present in amounts comparable to primary monocytes (17). We
demonstrate here that CD1c-DC also contain sizable amounts of
active CatG, which controls MBP processing in vitro. This is supported not only by blocking MBP turnover with a specific CatG
inhibitor, but also by affinity labeling of active CatG and by determining the turnover of an established fluorogenic CatG substrate, although the latter it is not specific for CatG (26). As an
additional line of evidence, turnover of MOG by CD1c-DC-derived lysosomal extracts resulted in a proteolytic pattern whose
major processing sites were strikingly similar to those obtained
when MOG was digested with purified CatG in vitro, also supporting the dominant activity of CatG in this type of DC. There is
still a theoretical possibility, however, that not CatG itself, but an
as yet unidentified CatG-like protease in CD1c-DC is responsible
for the effects observed. This hypothetical protease must then very
closely resemble CatG, i.e., have a very similar substrate specificity and molecular mass. If true, this would be not unlike the situation observed with CatS, CatL, and CatV: all three proteases
show a very similar substrate specificity, yet are distinct in their
structure, tissue distribution, regulation, and function (11, 35–37).
However, the bulk of evidence and especially the lack of possible
known candidates for such a novel CatG-like protease makes it far
more likely that CatG is the responsible enzyme.
Given the very low content of papain-like cysteine Cat along
with the absence of AEP, in lysosomes from CD1c-DC, any single
additional endoprotease, like CatG, might reach functional importance even if expressed at low amounts, because its effects are less
likely to be overridden by the activity of the other established
processing enzymes. The relatively large amount of CatG protein
in the absence of active CatG or CatG-related processing products
derived from MBP or MOG suggest the presence of CatG inhibitors in MO-DC. OVA-related serpins comprise a growing class of,
to date, 13 known efficient inhibitors of serine proteases including
CatG, whose members are present also in monocytes (40). The
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FIGURE 7. CatG activity, CatG protein, and mRNA
in DC. A, Total amounts of CatG activity were compared between equal amounts of protein from unstimulated MO-DC, MO-DC exposed to TNF-␣/IFN-␥/LPS,
respectively, CD1c-DC1, or monocytes (CD14). Purified CatG served as a positive, BLC as a negative control. CatG activity was determined by turnover of the
fluorogenic substrate Suc-AAPF-AMC and expressed in
arbitrary units. Mean values and SD of three independent experiments are presented. B, Equal amounts of
total lysosomal protein from CD1c-DC and MO-DC
were probed for active serine proteases using the biotinylated affinity probe DAP alongside purified CatG
and enriched granulocytes. C, Total cell lysates from the
same cell types as in A were assessed for CatG protein
by Western blot. A blot against ␤-actin served as control for equal amounts of total protein analyzed. D, The
relative amounts of RNA for CatG were analyzed by
quantitative RT-PCR and compared among CD1c-DC
(CD1c), PBMC, monocytes (CD14), MO-DC, and
MO-DC exposed to LPS for 24 h.
5948
MO-DC generated in vitro represent a limited model to analyze
Ag processing and the cell biology of human DC in general. Studies in well-defined types of primary human DC are warranted to
understand the role of different types of DC in the induction of
immunity or tolerance.
Acknowledgments
We greatly acknowledge C. Watts (University of Dundee, Scotland, U.K.)
for providing anti-AEP reagents and Matt Bogyo (Stanford University) for
the DAP affinity probe. Steven Verhelst was of significant help for the
DAP-labeling procedure and Simone Poeschel for performing the RT-PCR
experiments.
Disclosures
The authors have no financial conflict of interest.
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