JOBNAME: jnen 64#1 2005 PAGE: 1 OUTPUT: Tue January 18 18:20:30 2005 lww/jnen/90813/NEN18628 J Neuropathol Exp Neurol Copyright Ó 2005 by the American Association of Neuropathologists, Inc. Vol. 64, No. 1 January 2005 pp. 74–81 ORIGINAL ARTICLE Expression Patterns of Cell Cycle Components in Sporadic and Neurofibromatosis Type 1-Related Malignant Peripheral Nerve Sheath Tumors Trude Holmeide Ågesen, MSc, Vivi Ann Flørenes, MSc, PhD, Willemina M. Molenaar, MD, PhD, Guro E. Lind, MSc, Jeanne-Marie Berner, MSc, PhD, Boudewijn E. C. Plaat, MD, PhD, Rudy Komdeur, MD, PhD, Ola Myklebost, MSc, PhD, Eva van den Berg, MSc, PhD, and Ragnhild A. Lothe, MSc, PhD Abstract The molecular biology underlying the development of highly malignant peripheral nerve sheath tumors (MPNSTs) remains mostly unknown. In the present study, the expression pattern of 10 selected cell cycle components is investigated in a series of 15 MPNSTs from patients with (n = 9) or without (n = 5) neurofibromatosis type 1 (NF1). Thirteen tumors did not express the cyclin-dependent kinase inhibitor, p16INK4A, an observation that was related to homozygote gene deletions in three tumors, heterozygote deletions in five, and gross gene rearrangements in five. The absence of protein expression in the tumors with one seemingly intact allele was not caused by promoter hypermethylation of p16INK4A or p14ARF. All tumor samples expressed normal sized RB1, cyclin D3, CDK2, CDK4, p21CIP1, and p27KIP1 proteins, and only a single tumor showed an aberrant protein band for one of these proteins, p21CIP1. Cyclin D1 was absent in four tumors; all except one tumor showed expression of TP53 protein, and three of nine MPNSTs had expression of normal-sized MDM2. In conclusion, this study shows that the vast majority of MPNSTs had gross rearrangements of the p16INK4A gene, explaining the absence of the encoded protein in the same tumors. The level of expression was equally distributed between the familial (NF1) and sporadic cases, although it should be noted that the 2 cases with p16INK4A expression were sporadic. The data imply that the complete absence of p16INK4A is sufficient for activation of the cell cycle in most MPNSTs; thus, it is not From the Departments of Genetics (THA, GEL, RAL) and Tumor Biology (J-MB, OM), Institute for Cancer Research, and Department of Pathology (VAF), Norwegian Radium Hospital, Montebello, Oslo, Norway; Departments of Pathology (WMM, BECP), Surgical Oncology (RK), and Clinical Genetics (EvdB), University Hospital of Groningen, the Netherlands; and Department of Molecular Biosciences (RAL), University of Oslo, Oslo, Norway. Send correspondence and reprint requests to: Professor Ragnhild A. Lothe, PhD, Department of Genetics, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway. E-mail: [email protected] Supported by grants from the Norwegian Cancer Society (RAL: A95068, OM, VAF). 74 necessary for tumor proliferation to further stimulate the cycle through alteration of other central components. Key Words: Cell cycle, Malignant peripheral nerve sheath tumors, Neurofibromatosis, NF1, p16INK4A, Western blot. INTRODUCTION Malignant peripheral nerve sheath tumors (MPNSTs) are highly aggressive and arise sporadically or in patients with the common autosomal dominant hereditary disorder, neurofibromatosis 1 (NF1) (1). The NF1 tumor suppressor gene maps to chromosome band 17q11.2 and encodes the neurofibromin protein that functions as a suppressor of RASmediated signaling. Individuals with NF1 carry a germline mutation in this gene. Several studies have shown loss of heterozygosity of chromosome arm 17q sequences, including the NF1 locus in MPNSTs (2–5). Thus, a complete inactivation of NF1 is assumed to contribute to development of MPNSTs. However, somatic mutations in NF1 are also reported in benign neurofibromas, indicating that additional genetic events besides inactivation of NF1 are necessary for malignant transformation (6, 7). In contrast to several other soft tissue sarcomas, no pathognomonic structural aberration has been found in MPNST that often display complex karyotypes (8, 9). With comparative genomic hybridization (CGH), recurrent chromosomal copy number changes have been identified in MPNSTs, including losses from 9p and 13q (10–12). Based on the CGH data and other studies reporting loss of heterozygosity of 17p sequences, the tumor suppressor genes p16INK4A (map position 9p21), RB1 (13q14), and TP53 (17p13) have been suggested to be target genes for these deletions. Studies on the p16INK4A gene have revealed gene alterations in 50% to 75% of the MPNSTs analyzed (13–15). Alterations in p16INK4A are not reported in neurofibromas, and this emphasizes the importance of disrupted p16INK4A in the progression of the disease. The cyclin-dependent kinase inhibitor locus CDKN2A encodes p16INK4A (a-transcript) and p14ARF (b-transcript), which are both important in the negative J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 JOBNAME: jnen 64#1 2005 PAGE: 2 OUTPUT: Tue January 18 18:20:31 2005 lww/jnen/90813/NEN18628 J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 regulation of the cell cycle through their interaction with the RB1 and TP53 pathways, respectively (16). TP53 is frequently mutated in a number of cancer types, whereas biallelic inactivation seems to be a rare event in MPNSTs (17), even though a few point mutations in TP53 have been reported (18–20). Nevertheless, mouse models show that the TP53 pathway is important for the development of MPNSTs (21, 22). In the present study, we used Western blot analysis to further examine the protein levels of p16INK4, RB1, and TP53, as well as seven additional cell cycle components in a series of MPNSTs. Subsequently, molecular genetic and epigenetic analyses were performed on candidate genes, revealing interesting results based on the protein expression study. MATERIALS AND METHODS Patients and Tumors Samples from 18 MPNSTs were obtained from 16 patients admitted to the University Hospital of Groningen, The Netherlands. All frozen tumor samples were sectioned, hematoxylin and eosin-stained, and examined by an expert pathologist. All diagnoses were confirmed by routine histology. Three samples were excluded from the present study due to large amounts of necrotic tissue, and hence poor protein and DNA quality. The remaining samples all contained 80% to 100% tumor cells. Clinical data from the 14 patients (15 MPNSTs) included in the present study are summarized in Table 1. Ten tumors were taken from 9 patients with NF1 diagnosis, 3 females and 6 males, whereas the other 5 tumors were collected from 1 female and 4 males, without a family history of NF1. From 1 patient, 3 tumor samples (M1, M2, and M3) were Cell Cycle Proteins in MPNST analyzed, including 2 from different sites within the primary tumor (PT) and 1 from a metastasis. Western Blot Analyses of 10 Cell Cycle Proteins Frozen tissue samples were crushed into fine powder using a pestle and a mortar filled with nitrogen (N2) prior to lysis in cold lysis buffer (20 mmol/L Tris-HCl at pH 7.5, 137 mmol/L NaCl, 100 mmol/L NaF, 1 mmol/L Na2VO2, 10% glycerol, 1% icopal (NP-40), 1 mmol/L phenylmethylsulfonyl fluoride (PMSF), and 0.01 mg/mL each of aprotinin, leupeptin, and pepstatin (all chemicals from Sigma, St. Louis, MO). Lysates were sonicated and clarified by centrifugation. Protein quantization was done by Bradford analysis and 50 to 80 mg protein/lane was resolved by SDS polyacrylamide gel electrophoresis (SDS page). Following gel electrophoresis, proteins were blotted onto Immobilin-P membranes (Millipore, Bedford, MA). Hybridization was performed as described by St. Croix et al (23). Primary and secondary antibodies used in the present study are listed in Table 2. As positive controls, different cell lines were prepared as the tumor samples. The human melanoma cell line, WM35, was used as a positive control for detection of RB1, cyclin D1, cyclin D3, CDK2, CDK4, p21CIP1, p27KIP1, and TP53 (24, 25). MFH1X, a malignant fibrous histiocytoma, and NCS2x, a nonclassified sarcoma, both established as xenograft cell lines, were used for its expression of mutated TP53 and MDM2 proteins, respectively (26). A p16INK4A control was obtained commercially (Santa Cruz Biotechnology, Inc., Santa Cruz, CA). The signals of the protein bands were visually scored and graded as follows: 2 = no expression; + = weak expression; ++ = moderate expression; and +++ = strong expression. a-Tubulin was used as a loading control. The intensity of the protein TABLE 1. Clinicopathologic Data Tumor Sample Gender Age (year) at Diagnosis NF1 Status Diagnosis Tumor Type Tumor Site Tumor Grade B1 C* D E F G H J K M1‡ M2‡ M3‡ N O P Q M M M F M F M M F M M M M M M F 28 27 74 25 22 52 41 61 32 26 26 26 41 53 29 42 Yes Yes No Yes Yes Yes No No No Yes Yes Yes No Yes Yes Yes MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST MPNST New PT? Meta PT PT† PT after TNF, presumably R PT R PT after TNF PT PT biopsy PT resection R PT PT PT Synchronous meta or multiple PT Proximal jejunal Lung Mediastinum Neck Thigh Mediastinum Axilla Knee Tigh Thoracic wall Thoracic wall Thoracic wall left Tigh Shoulder Sacral area Neck NK NK III III III III I III II III III II III III III III PT, primary tumor; Meta, metastasis; R, recurrence; NK, not known. *, Published by Molenaar et al (64). †, Triton tumor. ‡, M1, M2, M3; 3 tumor samples from 1 patient. M1 and M2 are from the same tumor (biopsy and resection). q 2005 American Association of Neuropathologists, Inc. 75 JOBNAME: jnen 64#1 2005 PAGE: 3 OUTPUT: Tue January 18 18:20:32 2005 lww/jnen/90813/NEN18628 J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 Ågesen et al TABLE 2. Antibodies Used in the Western Blot Experiments Antibody Antibody Specification Manufacturer Concentration Used in Western Blot a-tubulin RBI p16INK4A cyclin D1 cyclin D1 cyclin D3 CDK2 CDK4 p21CIP1 p27KIP1 TP53 MDM2 W401B W402B Monoclonal Mouse Anti-Human a-tubulin (clone 57) Monoclonal Mouse Anti-Human Retinoblastoma (RBI) Polyclonal Rabbit Anti-Human p16 (C-20) Monoclonal Mouse Anti-Human Cyclin D1 (clone DCS-6) Monoclonal Mouse Anti-Human Cyclin D1 (clone DCS-6) Monoclonal Mouse Anti-Human Cyclin D3 (clone DCS-22) Polyclonal Rabbit Anti-Human CDK2 (M2) Polyclonal Rabbit Anti-Human CDK4 (C-22) Polyclonal Rabbit Anti-Human p21 (C-19) Monoclonal Mouse Anti-Human p27 (clone 57) Monoclonal Mouse Anti-Human p53 (DQ-1) Monoclonal Mouse Anti-Human MDM2 (AB1) Anti-Rabbit IgG HRP Anti-Mouse IgG HRP Oncogene Research Products, Boston, MA Pharmingen, San Diego, CA Santa Cruz Biotechnology, Inc., Santa Cruz, CA Oncogene Research Products Neomarkers, Fremont, CA DAKO A/S, Glostrup, Denmark Santa Cruz Biotechnology, Inc. Santa Cruz Biotechnology, Inc. Santa Cruz Biotechnology, Inc. BD Biosciences, San Jose, CA Santa Cruz Biotechnology, Inc. Oncogene Research Products Promega, Madison, WI Promega, Madison, WI 0.5–1.0 mg/mL 2–2.5 mg/mL 2–3 mg/mL 2 mg/mL 1–2 mg/mL 3.4 mg/mL 1 mg/mL 1 mg/mL 1–2 mg/mL 1 mg/mL 5 mg/mL 0.6 mg/mL 1:5,000 1:5,000 bands in each sample was visually compared with the expression of a-tubulin. The relative intensity among all samples was finally decided based on joint evaluation of the different runs and different exposures. The visual scorings were done by two of the authors (THÅ and VAF). Gene Rearrangements of CDKN2A by Southern Blot Analysis One previously analyzed MPNST (1: 650) and 2 normal blood samples were included as positive and negative controls for p16INK4A pattern in the Southern blot experiments (13). Tissue samples were digested with proteinase K, and genomic DNA extracted semi-automatically by phenol/chloroform followed by ethanol precipitation as described by the manufacturer (Nucleic Acid Extractor, Applied Biosystems, Foster City, CA). DNA (3.5 mg) from each sample was digested to completion by BamHI (Amersham Biosciences Europe GmbH, Oslo, Norway), and then separated by electrophoresis through a 0.8% agarose gel. The separated fragments were transferred onto a Hybond-N+ membrane (Amersham Biosciences) and DNA was fixed to the membrane by baking at 80°C for 2 hours. A cDNA fragment containing the human p16INK4A sequence was used as probe (provided by Dr. D. Beach) (27), and radioactively labeled with 32P by ‘‘random priming’’ (28). The hybridization was carried out in 0.5 mol/L sodium phosphate (pH 7.2), 7% SDS, and 1 mmol/L sodium EDTA overnight at 65°C. After hybridization, excess probe was removed in several washing steps with 40 mmol/L NaP (pH 7.2) and 1% SDS. To correct for an unequal loading of DNA, the membranes were rehybridized with a control probe, APOB, localized to chromosome 2. Quantization of signal intensities was achieved by two-dimensional densitometry using a Molecular Dynamics (Sunnyvale, CA) laser densitometer. The net signals (integrated optical density) of CDKN2A bands were calculated relative to the signal obtained with the APOB control probe, i.e. CDKN2A/APOB of the sample divided by the average CDKN2A/APOB for the samples scored as normal. Signals weaker than 25% or 75% were scored as a homozygote or heterozygote deletion, 76 respectively. This conservative cutoff was chosen since some contribution of signal is expected from the presence of normal cells in the tumor and the fact that the nature of Southern blotting does not provide exact quantitative results. Rehybridization of the Southern blot with the p16INK4A probe was performed and the signal intensities measured again, confirming the initial results. Epigenetic Analysis of CDKN2A Locus DNA samples submitted to methylation analyses were modified according to the protocol of the CpGenome DNA modification kit (InterGen, Boston, MA) as previously described (29). Briefly, 1 mg DNA was used as starting amount and each treated sample was resuspended in 50 mL 0.5 3 TE, pH 7.5. DNA methylation status of CDKN2A (a- and b-transcript) promoters were determined by subsequent methylation specific PCR (MSP) (30), using different primer sets specific for methylated and unmethylated CpG sites. Previously described primer sets were used for amplification of p14ARF and p16INK4A (30). All fragments were amplified with 25 pmol of each primer. The reactions contained from 1.2 to 1.5 mmol/L MgCl2, and 0.25 to 2 mL bisulphite modified DNA solution as template. The enzyme used for the MSP reactions was 0.625 unit HotStart (Qiagen Inc., Valencia, CA). The annealing temperatures were 64°C (unmethylated a-transcript), 63°C (methylated a-transcript), and 59°C for both b-transcript. In vitro SssI (New England BioLabs, Beverly, MA) methylated Placenta DNA (Sigma) was used as the positive control for the methylated reactions, whereas DNA from normal lymphocytes was used as the positive control for the unmethylated reactions. Water replacing template in the MSP was the negative control for both reactions. The PCR products were analyzed by running 7.5% polyacrylamide gel and stained with ethidium bromide before photographing using an UV transilluminator. RESULTS The Western blot results for the 10 selected cell cycle proteins are summarized in Table 3. q 2005 American Association of Neuropathologists, Inc. JOBNAME: jnen 64#1 2005 PAGE: 4 OUTPUT: Tue January 18 18:20:34 2005 lww/jnen/90813/NEN18628 J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 Cell Cycle Proteins in MPNST TABLE 3. Protein Expression of Cell Cycle Components in MPNSTs Expression Levels of Cell Cycle Regulators Observed by Western Blot Analyses Tumor Sample RBI (13q14.2) P16INK4A (9p21) cyclin D1 (11q13.3) Cyclin D3 (6p21) CDK2 (12q13) CDK4 (12q14) p21CIP1 (6p21.2) p27KIP1 (12p13) TP53 (17p13.1) MDM2 (12q14.3-q15) B1 C D E F G H J K M1 M2 M3 N O P Q Positively stained MPNST number analyzed ++ ++ + ++ + ++ ++ ++ ++ + ++ +++ ++ +++ ++ +++ 15/15 (100%) 2 2 +++ 2 2 2 + 2 2 2 2 2 2 2 2 2 2/15 (13%) + + 2 + 2 ++ ++ + + + + 2 + + 2 + 11/15 (73%) +++ +++ + ++ ++ ++ +++ ++ ++ ++ ++ ++ + ++ ++ ++ 15/15 (100%) ++ ++ ++ ++ + + + + ++ ++ ++ ++ ++ ++ ++ ++ 15/15 (100%) ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ + ++ ++ ++ ++ 15/15 (100% ++ ++ + + + ++ +++* ++ ++ ++ +++ + + + +++ + 15/15 (100%) ++ ++ +++ ++ ++ ++ ++ ++ +++ ++ ++ ++ + ++ ++ + 15/15 (100%) ++ ++ ++ ++ + + ++ ++ ++ ++ ++ ++ + 2 ++ ++ 14/15 (93%) na na na na +++ na na 2 2 2 + 2 2 2 +++ 2 3/9 (30%) Note: Proteins are indicated on the top of each column with the chromosome localization in parentheses. *, In addition to the expected protein band of 21 kDa, a single band with a lower molecular weight was seen. Protein expression level is indicated as follows: 2, no expression; +, weak; ++, moderate; +++, strong; na, not analyzed. p16INK4A was only detected in 2 of 15 (13%) MPNSTs. One tumor showed weak protein expression, whereas a strong expression of p16INK4A was detected in the second (Fig. 1A). Thirteen of 15 (87%) MPNSTs showed gene alterations in p16INK4A by Southern blot (Fig. 1B). Of the two MPNSTs with p16INK4A protein expression, only tumor D with a strong expression showed a normal gene pattern in the Southern blot experiment. In five samples, the signal intensity was evaluated to be weaker than between 25% and 75% compared with normal samples, indicating a heterozygote deletion of p16INK4A. Three MPNSTs had an intensity that corresponds to a homozygote deletion of the gene. Five tumors had gene rearrangements, seen as restriction fragments of abnormal mobility. In two of these tumors, the normal band was detectable in addition to the abnormal restriction fragment (Fig. 1B). The CDKN2A locus encoding both p16INK4A and ARF p14 revealed no hypermethylation in either of the two promoters. For p16INK4A, 13 of 15 tumors were successfully analyzed, whereas the success rate for p14ARF was 11 of 15. All tumor samples expressed RB1, cyclin D3, CDK2, CDK4, p21CIP1, and p27KIP1 proteins. Examples related to the level of a-tubulin are illustrated in Figure 2. The antibody used to detect RB1 hybridizes to both phosphorylated and unphosphorylated proteins, and seemingly most of the RB1 protein was hypophosphorylated. RB1, cyclin D3, CDK2, CDK4, and the protein CDK inhibitor p27KIP1 typically showed a moderate or strong expression level, whereas p21CIP1 ranged from a low to strong protein level. One tumor (H) revealed a protein with reduced size in addition to the wildtype fragment for p21CIP1 (Fig. 2). q 2005 American Association of Neuropathologists, Inc. TP53 expression was seen in all but one tumor, typically at a moderate level. Eleven of 15 tumors (73%) expressed cyclin D1, although in most cases only weakly. Three of nine MPNSTs expressed MDM2 protein and two of these at a strong level. The expression levels of the cell cycle proteins analyzed were similarly distributed between sporadic MPNSTs and NF1-associated MPNSTs. However, for p16INK4A, both cases with expression (D and H) were sporadic MPNSTs, whereas both MDM2-positive tumors were from NF1 cases. DISCUSSION The molecular mechanisms underlying the development of MPNSTs are only partly understood. Several lines of evidence indicate that cell cycle regulators are involved in the progression of this disease. Previous reports concerned with expression of cell cycle components in MPNSTs have most commonly used immunohistochemistry for in situ analyses of tissue sections, with no information on the protein size. In the present study of MPNSTs, we used Western blot analysis to obtain information about possible alterations in the protein sizes caused by gene alterations or regulation at the expression level such as phosphorylations and dephosphorylations of proteins. From the expression pattern of 10 cell cycle regulators used in this study, the most striking observation was made for p16INK4A. Only 2 of 15 (13%) MPNSTs revealed expression of p16INK4A, which is in agreement with previous in situ expression studies (15, 31, 32). These results and the fact that most of the precursor lesions, neurofibromas, and plexiform neurofibromas 77 JOBNAME: jnen 64#1 2005 PAGE: 5 OUTPUT: Tue January 18 18:20:36 2005 lww/jnen/90813/NEN18628 Ågesen et al J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 FIGURE 1. Protein expression and DNA rearrangement of p16INK4A in MPNSTs. (A) p16INK4A was detected in 2 samples (D and H). In sample H, weak protein expression was seen, whereas sample D revealed high level of p16INK4A. a-Tubulin was used as a protein loading control. (B) The Southern blot picture shows the results of all tumor samples run in the present study. N, normal; D, homozygote deletion; r, restriction fragments with abnormal mobility as well as the normal fragment; R, restriction fragments with abnormal mobility and only residual amounts of the normal restriction fragments; d, heterozygote deletion. 650 and 651 are a previously analyzed MPNST and the corresponding blood sample, respectively, and used as controls in our experiments (13). M1 and M2 are 2 samples from the same tumor. ni, sample not included in the study. express p16INK4A, suggest that lack of functional p16INK4A is associated with malignant progression (15, 31, 32). The p16INK4A gene, located at chromosome band 9p21, is found inactivated by deletions, mutations, and methylation over a wide range of malignancies (33). The main mechanism for lack of p16INK4A protein in MPNST has been shown to be gross alterations of the gene, including homozygote deletions (13–15). This was later confirmed by interphase FISH and PCR analyses (34, 35). In this study, we found, as expected, gene alterations in p16INK4A in most tumor samples. Six of the 15 tumors with gene rearrangement showed a complete inactivation of p16INK4A, confirming that lack of protein expression is caused by genomic alterations. Three MPNSTs showed a restriction fragment of abnormal mobility where only residual amounts of the normal band were seen, whereas homozygote deletions were observed in three tumors. In our initial study, we found homozygote deletion in one of 12 MPNSTs (13). In total, this suggests that 15% of MPNST are homozygously deleted for p16INK4A, which is approximately twice the 78 frequency of sarcomas, generally reported to be 7% (36). Only one (sample H) of the MPNSTs with heterozygote deletions of the gene had p16INK4A protein expression. The absence of protein seen in most tumors might be due to complete inactivation of the gene, and the remaining second allele could be inactivated by mechanisms not detectable by Southern blot analysis. The p16INK4A and p14ARF, both encoded by the CDKN2A locus and known to be inactivated by promoter hypermethylation in a wide range of tumors (33, 37), were, however, not methylated. This observation is in keeping with our initial findings in which none of 12 MPNSTs was methylated at the CDKN2A locus (13). On the other hand, methylation of these genes has recently been reported in a few MPNSTs (35). Taking all of the data together, we conclude that promoter methylation does not seem to be a major mechanism explaining the absence of CDKN2A protein. Only one of the two MPNSTs with observed p16INK4A protein expression had normal gene restriction fragments when hybridized with a p16INK4A probe, indicating that although alteration of this gene and its encoded protein is q 2005 American Association of Neuropathologists, Inc. JOBNAME: jnen 64#1 2005 PAGE: 6 OUTPUT: Tue January 18 18:20:50 2005 lww/jnen/90813/NEN18628 J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 Cell Cycle Proteins in MPNST FIGURE 2. CDK4 protein expression for selected MPNSTs observed by Western blot analysis is shown top left in the figure. Expression of p21CIP1 from two different runs is shown top right. In one MPNST (sample H), we observed a fragment with a lower molecular weight (17–18 kDa) in addition to the expected protein band at 21 kDa. a-Tubulin was used as a protein loading control and is shown below of its respective membrane. Weak protein staining was seen on this membrane for tumor p, and the sample was reanalyzed and interpreted on a second film as ++ (moderate expression). ni, sample not included in the study. frequent and most likely important for the progression of the majority of MPNST, it is not a necessity for MPNST development. Loss of RB1 function is frequently found in a number of cancers such as retinoblastoma, osteosarcoma, breast cancer, and small cell lung and bladder carcinomas (16, 38). Previous studies have investigated the protein level of RB1 in MPNSTs, as well as in other sarcomas using immunohistochemistry (31, 39–41). RB1 was expressed in all MPNSTs, and by CGH the same tumors showed a loss of 13q chromosome material in seven of the samples also expressing RB1 (unpublished data). These findings might indicate a heterozygote deletion of RB1 in these MPNSTs, but in order to identify possible gene mutations or other gene rearrangements in the remaining allele the samples should be submitted to more detailed gene analysis. However, tumor cells showing loss of functional p16INK4A tend to retain wild-type RB1, whereas cells with no RB1 expression generally express wild-type p16INK4A (42). The D-type cyclins play a critical role in regulating the G1 restriction point through binding to CDK4 or CDK6, leading to a subsequent phosphorylation and inactivation of RB1. Cyclin D1 was, in most cases, weakly expressed in our tumor samples, which may be explained by the labile nature of the D-type cyclins. A relatively low frequency of cyclin D1-immunoreactive MPNSTs has also been reported by other investigators using immunohistochemistry analysis (39, 40). Amplifications of the cyclin D1 gene have been detected in different types of sarcoma (36), but in a previous study we found amplification of cyclin D2 in only one of 12 MPNSTs (13). No amplification was detected of cyclin D1 and cyclin D3 in any of the 12 q 2005 American Association of Neuropathologists, Inc. MPNSTs, showing that amplifications of the D-type cyclins are not frequent in these tumors (13). In the present study, cyclin D3 was found to be more intensely expressed compared with cyclin D1. It is assumed that cyclin D3 is the most widely expressed D-type cyclin and that it may have other cellular roles distinct from, but associated with cell cycle regulation, such as promoting differentiation (43). However, we cannot exclude that this difference was caused by technical variations in, for instance, antibody specificity and sensitivity. CDK4 and CDK2 protein expression was observed in all MPNSTs. In agreement with our results, Yoo et al reported expression of CDK4 in 93% of the MPNSTs analyzed as well as similar findings in other soft tissue sarcomas included in the study (40). In sharp contrast to these data, Birindelli et al detected CDK4 expression in only one of 26 MPNSTs analyzed (31). Expression of CDK4 and CDK2 has been described in other sarcomas as well as in carcinomas (44–47). To our knowledge, the present study describes, for the first time, CDK2 expression in MPNSTs. An overexpression of CDK2 and CDK4 could be an indication of accelerated cell cycle. However, the kinases need, in addition to association with corresponding cyclins, the proper phosphorylations and dephosphorylations at conserved threonine residues to accelerate the cell cycle (48). Overexpression could be due to amplification of the gene, but we have shown previously that CDK4 amplification is rare in MPNST (13). One may also argue that CDK4/2 amplification and overexpression of CDK4 or CDK2 would not be a matter of necessity for the tumor development when p16INK4A is nonfunctional. 79 JOBNAME: jnen 64#1 2005 PAGE: 7 OUTPUT: Tue January 18 18:20:59 2005 lww/jnen/90813/NEN18628 Ågesen et al The CDK inhibitors, p21CIP1 and p27KIP1, are members of the same Cip/Kip family with inhibition of cyclin (D, E, and A)/CDK (4, 6, and 2) complexes as their major function. p27KIP1 is suggested to be involved in the malignant transformation of neurofibromas based on the observation of decreased immunostaining of nuclear p27KIP1 in high-grade MPNSTs versus neurofibromas, and a strong cytoplasmic p27KIP1 staining in the MPNSTs (32, 39). In our study, p27KIP1 was seen in all tumors, in most cases at a moderate to high level, but the difference between nuclear and cytoplasmic staining could not be determined due to the nature of Western blot analysis. It has been suggested that an increased expression of p27KIP1 may also function to protect the cells from the toxic effect of any high levels of cyclin E and cyclin D1 (49). Supporting these findings, Kourea et al found a significant relationship between the high levels of nuclear cyclin E and cytoplasmic p27KIP1 in MPNST (39). Because p27KIP1 was sequestered to the cytoplasm, the protein would be prevented from inhibiting the cyclin E/CDK2 complexes and the cancer cells would be protected from the inhibitory effects of p27KIP1 (49). It is well documented that TP53 activates p21CIP1 transcription in response to DNA damage and cellular stress (16). Kourea et al have reported positive p21CIP1 immunoreactivity in 16 of 35 (46%) MPNSTs (39). We observed p21CIP1 protein expression in all tumors; however, in 8 of 15 (53%) MPNSTs, a moderate to high level was seen. It has been demonstrated that a certain amount of p21CIP1 is actually necessary to promote association of CDK4 and the D-type cyclins and target the complex to the nucleus, but at high concentration p21CIP1 inhibits the CDK4/cyclin D activity and arrests the cell cycle (50). In one sample (H), two protein bands, one normal sized and one with a lower molecular weight, were seen on the Western blot. Recent studies have shown that both caspase 3 and proteinase 3 can mediate p21CIP1 cleavage during early stage of apoptosis (51, 52). Our band has, however, a slightly larger molecular size than the protein band observed in the former studies (17 to 18 kDa vs 14 kDa and 10 kDa, respectively), suggesting that other mechanisms might have caused truncation of p21CIP1 in this tumor. Even though somatic mutations are not a common mechanism to inactivate p21 CIP1 (53, 54), a nonsense mutation that generates a truncated protein cannot be excluded. The TP53 protein level is normally low due to its short half-life, and a rise in TP53 is seen as a response to different types of DNA damages. Accumulation of TP53 is commonly seen in tumor samples, usually as a consequence of gene mutations, which have been shown to be the major cause of stabilization and inactivation of the protein (55). Expression of TP53, detected by immunohistochemistry, has been observed in sarcomas including MPNSTs ranging from 29% to 100% in MPNSTs (31, 32, 39, 40, 56–58). We observed TP53 expression in all but one MPNST. Supporting the importance of TP53 in MPNST tumor progression is the finding of low or no levels of TP53 in neurofibromas (31, 39, 58). A few mutations have been reported in MPNSTs (18–20, 31), but biallelic inactivation seems to be rare (17); thus other mechanisms (e.g. binding to viral or cellular oncoproteins) may cause stabilization of the protein (59). The transcription of MDM2 is activated by a functional TP53, and is one of the central components in the negative 80 J Neuropathol Exp Neurol Volume 64, Number 1, January 2005 regulation of the TP53 protein level in cells. MDM2 interacts with and prevents TP53 from further stimulating transcription of downstream genes, and targets TP53 for degradation (60). MDM2 activity itself is inhibited by p14ARF, one of the two transcripts derived from the CDKN2A locus (61–63). An alteration of the CDKN2A locus, as observed in the majority of the MPNSTs in this study, most likely also alters the expression of p14ARF, and the absence of p14ARF would therefore predict high levels of MDM2. However, we found MDM2 expressed in only three of nine (33%) MPNSTs analyzed, and one of the three had a seemingly normal CDKN2A gene locus. Taken together, it is likely that p14ARF expression is not completely absent in most MPNSTs, and other regulation mechanisms not studied here further control the expression of these proteins. Previous studies have also demonstrated MDM2 protein expression in MPNST in agreement with our data (31, 40). The present study describes the protein expression level of a set of cell cycle components in the same MPNSTs. Strikingly, absence of the cyclin-dependent kinase inhibitor p16 INK4A was seen in most cases and found associated with gross gene alterations of the CDKN2A locus. In contrast to in situ immunohistochemistry, we could evaluate the protein sizes of the 10 cell cycle components analyzed. With the exception of p16INK4, only one antibody showed an abnormally sized protein in a single tumor. The expression levels of the proteins were overall not skewed among the tumors and were equally distributed between NF1-associated cases and sporadic ones. 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